A multidisciplinary study to assess the ecology of the Cape sea urchin, Parechinus angulosus, and its emerging use as a bioindicator to monitor coastal resiliency
- Authors: Redelinghuys, Suzanne
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435691 , vital:73179 , DOI 10.21504/10962/435692
- Description: The resilience of marine species in the face of unpredictable climate change stands as a paramount concern for the maintenance of ecological stability. Under such fluctuating conditions, it is critical to understand how organisms mitigate these effects in physiological, genetic, and morphological terms. To that end, this thesis focused on the Cape sea urchin, Parechinus angulosus, employing a multidisciplinary approach encompassing morphology, genomics, and gut microbial diversity to assess its potential as a bioindicator species and elucidate its adaptive strategies in response to varying environmental conditions along the South African coastline. This was achieved through studying their anatomy in order to link observed variation to prevailing local environmental conditions, aided by the species’ wide distribution range which allows insight into adaptations across broad geographic regions and ecological settings. The first empirical chapter, Chapter 3, focusing on eight key morphometric traits of test, Aristotle’s lantern and spines, revealed distinct variation in the Cape sea urchin's morphology between the east and west coasts of South Africa, suggesting the presence of some level of local adaptation to the prevailing environmental factors found on the east and west coasts of South Africa. This points to potential bioindicator capabilities of the species, reflecting adaptive divergence amidst contrasting environmental conditions. Further analysis is however necessary in order to isolate specific physiological trends that may be associated with these morphometric differences, thereby enhancing and tightening their ecological implications. The second experimental chapter, Chapter 4, delved into the genetic structure of the Cape urchin by investigating genome-wide diversity, the presence of cryptic population structure, and spatial patterns of genomic diversity. Moderate genomic differentiation was detected among populations along the eastern and western coasts of South Africa by outlier loci that may undergo natural selection, which could indicate local adaptation to environmental conditions. This pattern hints at adaptive differentiation and cryptic genetic structures within the Cape sea urchin populations and emphasises the species' potential adaptive responses to localised (in this case regional) environmental pressures. Assigning functional significance to these genetic variations will require a comprehensive annotated reference genome, a limitation acknowledged in the current study. Chapter 5 explored the gut microbial diversity and revealed significant compositional variations between the east and west coast populations of South Africa, confirming regional and inter-regional variation. This chapter also highlighted the essential biochemical pathways critical to the survival of the host which is crucial for assessing the health of the urchin host. Together, the functional content of the gut bacteria and microbial diversity showcases its potential as a bioindicator for coastal ecosystem health. Logistical challenges and confounding factors like host physiology will need to be fully considered for its effective application. Overall, the findings of this doctoral research suggest that the Cape sea urchin displays promising characteristics as a bioindicator species due to its morphological, genetic, and gut microbial variations in response to environmental differences, providing a diverse array of means in which urchins could be used as bioindicators, from their uses to assess water quality and detect pollution, to ecosystem health monitoring and biodiversity studies in which sea urchin abundance, distribution, and presence are monitored. Further research, integrating these multidisciplinary approaches is recommended to validate and refine its bioindicator potential. Additionally, the development of a comprehensive annotated reference genome is imperative to harness the species' genetic information effectively. This study underscores the significance of integrating multiple disciplines in understanding how species respond to environmental change and their potentials contributions to monitor ecological resilience. The original multidisciplinary approach, combined with high computational outputs presents a promising framework for a comprehensive ecological monitoring in marine ecosystems. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Redelinghuys, Suzanne
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435691 , vital:73179 , DOI 10.21504/10962/435692
- Description: The resilience of marine species in the face of unpredictable climate change stands as a paramount concern for the maintenance of ecological stability. Under such fluctuating conditions, it is critical to understand how organisms mitigate these effects in physiological, genetic, and morphological terms. To that end, this thesis focused on the Cape sea urchin, Parechinus angulosus, employing a multidisciplinary approach encompassing morphology, genomics, and gut microbial diversity to assess its potential as a bioindicator species and elucidate its adaptive strategies in response to varying environmental conditions along the South African coastline. This was achieved through studying their anatomy in order to link observed variation to prevailing local environmental conditions, aided by the species’ wide distribution range which allows insight into adaptations across broad geographic regions and ecological settings. The first empirical chapter, Chapter 3, focusing on eight key morphometric traits of test, Aristotle’s lantern and spines, revealed distinct variation in the Cape sea urchin's morphology between the east and west coasts of South Africa, suggesting the presence of some level of local adaptation to the prevailing environmental factors found on the east and west coasts of South Africa. This points to potential bioindicator capabilities of the species, reflecting adaptive divergence amidst contrasting environmental conditions. Further analysis is however necessary in order to isolate specific physiological trends that may be associated with these morphometric differences, thereby enhancing and tightening their ecological implications. The second experimental chapter, Chapter 4, delved into the genetic structure of the Cape urchin by investigating genome-wide diversity, the presence of cryptic population structure, and spatial patterns of genomic diversity. Moderate genomic differentiation was detected among populations along the eastern and western coasts of South Africa by outlier loci that may undergo natural selection, which could indicate local adaptation to environmental conditions. This pattern hints at adaptive differentiation and cryptic genetic structures within the Cape sea urchin populations and emphasises the species' potential adaptive responses to localised (in this case regional) environmental pressures. Assigning functional significance to these genetic variations will require a comprehensive annotated reference genome, a limitation acknowledged in the current study. Chapter 5 explored the gut microbial diversity and revealed significant compositional variations between the east and west coast populations of South Africa, confirming regional and inter-regional variation. This chapter also highlighted the essential biochemical pathways critical to the survival of the host which is crucial for assessing the health of the urchin host. Together, the functional content of the gut bacteria and microbial diversity showcases its potential as a bioindicator for coastal ecosystem health. Logistical challenges and confounding factors like host physiology will need to be fully considered for its effective application. Overall, the findings of this doctoral research suggest that the Cape sea urchin displays promising characteristics as a bioindicator species due to its morphological, genetic, and gut microbial variations in response to environmental differences, providing a diverse array of means in which urchins could be used as bioindicators, from their uses to assess water quality and detect pollution, to ecosystem health monitoring and biodiversity studies in which sea urchin abundance, distribution, and presence are monitored. Further research, integrating these multidisciplinary approaches is recommended to validate and refine its bioindicator potential. Additionally, the development of a comprehensive annotated reference genome is imperative to harness the species' genetic information effectively. This study underscores the significance of integrating multiple disciplines in understanding how species respond to environmental change and their potentials contributions to monitor ecological resilience. The original multidisciplinary approach, combined with high computational outputs presents a promising framework for a comprehensive ecological monitoring in marine ecosystems. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
Augmentation of Aphytis melinus DeBach (Hymenoptera: Aphelinidae) for the control of California red scale Aonidiella aurantii Maskell (Hemiptera: Diaspididae) on citrus
- De Beer, Ernst Friedrich Ludwig
- Authors: De Beer, Ernst Friedrich Ludwig
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435638 , vital:73175 , DOI 10.21504/10962/435638
- Description: Aphytis lingnanensis was reared and tested in South Africa in the early 2000s for augmentation against red scale on citrus and was found to be ineffective. Aphytis melinus is now commercially available and it is important that the efficacy of augmentation thereof on red scale is determined locally. Field trials, fitness assessments and molecular identification on A. melinus from two insectaries were done. Field trials was done in seven, five and six pairs of comparable release and control orchards across the Eastern and Western Cape during the seasons of 2019/2020, 2020/2021 and 2021/2022 respectively. Red scale infestation was monitored and a sample of 20 infested fruit from each orchard was randomly collected every four weeks. Aphytis spp. responsible for parasitism were identified and the percentage parasitism recorded. Results of this study of field trials suggest that the augmentation of A. melinus did not significantly increase the level of parasitism above that of the untreated control. Five repetitions with six replicates of flight and longevity tests were performed with wasps from each insectary. Wasps in the longevity test from two insectaries were kept at 23 °C and 65% RH with honey. Flight tests were performed in tubes of 16 by 30 cm, with a light above a clear, sticky ceiling at 23 °C and 65% RH. On average in five replicates, 65%, 33% and 17% A. melinus wasps were alive on day one, five and 10 respectively. The overall sex ratio was 1.58 for females to males, but 1.05, 2.19 and 2.66 for non-flyers, non-crawlers, crawlers, and flyers respectively. In flight tests for both insectaries combined, only 36.97% of wasps could initiate flight in 24 h while 56.96% remained on the tube floor, and 6.05% attempted to crawl upwards. No significant differences in flight performance were recorded between the two insectaries. Wasps from the local insectary lived significantly longer during the longevity tests but were shorter in transit than wasps from the overseas insectary. COI genes were sequenced and compared against Genbank sequences using BLAST. Molecular identifications did not confirm morphological identifications for all species, indicating unexpected genetic complexity. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: De Beer, Ernst Friedrich Ludwig
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435638 , vital:73175 , DOI 10.21504/10962/435638
- Description: Aphytis lingnanensis was reared and tested in South Africa in the early 2000s for augmentation against red scale on citrus and was found to be ineffective. Aphytis melinus is now commercially available and it is important that the efficacy of augmentation thereof on red scale is determined locally. Field trials, fitness assessments and molecular identification on A. melinus from two insectaries were done. Field trials was done in seven, five and six pairs of comparable release and control orchards across the Eastern and Western Cape during the seasons of 2019/2020, 2020/2021 and 2021/2022 respectively. Red scale infestation was monitored and a sample of 20 infested fruit from each orchard was randomly collected every four weeks. Aphytis spp. responsible for parasitism were identified and the percentage parasitism recorded. Results of this study of field trials suggest that the augmentation of A. melinus did not significantly increase the level of parasitism above that of the untreated control. Five repetitions with six replicates of flight and longevity tests were performed with wasps from each insectary. Wasps in the longevity test from two insectaries were kept at 23 °C and 65% RH with honey. Flight tests were performed in tubes of 16 by 30 cm, with a light above a clear, sticky ceiling at 23 °C and 65% RH. On average in five replicates, 65%, 33% and 17% A. melinus wasps were alive on day one, five and 10 respectively. The overall sex ratio was 1.58 for females to males, but 1.05, 2.19 and 2.66 for non-flyers, non-crawlers, crawlers, and flyers respectively. In flight tests for both insectaries combined, only 36.97% of wasps could initiate flight in 24 h while 56.96% remained on the tube floor, and 6.05% attempted to crawl upwards. No significant differences in flight performance were recorded between the two insectaries. Wasps from the local insectary lived significantly longer during the longevity tests but were shorter in transit than wasps from the overseas insectary. COI genes were sequenced and compared against Genbank sequences using BLAST. Molecular identifications did not confirm morphological identifications for all species, indicating unexpected genetic complexity. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
Developing biological control agents for the management of the invasive tree Robinia pseudoacacia
- Authors: Wolmarans, Abigail
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435716 , vital:73181
- Description: Robinia pseudoacacia (Fabaceae) is a deciduous tree native to the Appalachian Mountains of North America but has become naturalised and invasive in other countries such as temperate North America, Europe, Australia, and Southern Africa. In South Africa the tree is classified as a category 1B invasive alien under the National Environmental Management Act (NEMBA), which stipulates the species requires some form of control as it has already caused extensive negative ecological and economic impacts. In the invaded range the tree creates monocultures that displace native species and spreads rapidly from suckering roots, making it a proficient invader. The South Africa plant prioritisation system suggests R. pseudoacacia is in the top three species which should be considered for classical weed biological control in South Africa. This thesis investigates which insects known to be associated with tree should be prioritised as candidate agents, as well as offering interesting insights into prioritising insects for weed biological control and using plant phylogenies and available literature to predict insect specificity. To ensure that no candidate biological control agents were already present in South Africa as well as to prioritise which guilds of the tree to prioritise for potential biological control, pre-release surveys were conducted across nine sites where the tree has invaded South Africa. It was found that no insects from the native range of R. pseudoacacia were present in South Africa. Seed surveys revealed that generalist insects attack a sizable proportion (68 %) of the seeds on the trees. In combination with a low seed soil bank (15.8 %) this suggests that seed- feeding agents may be helpful, however, candidate agents which damage leaves should be prioritised due to R. pseudoacacia relying heavily upon vegetative reproduction and much less on sexual reproduction. Leaves may therefor reduce the spread of these invasive trees. The insect assemblages in the native range of R. pseudoacacia are well understood. In addition, several associated insects have unintentionally followed the tree on its global spread, where they are often regarded as pests. The third chapter is therefore aimed at prioritising the known insects associated with the tree in both the native and invaded range. Literature surveys and Harris (1973) prioritisation systems were used to prioritise close to 64 candidate biological control agents down to three foliage- feeding agents, namely Odontota dorsalis (Coleoptera, Chrysomelidae), Macrosaccus robiniella (Lepidoptera, Gracillariidae) and Obolodiplosis robiniae (Diptera, Cecidomyiidae). To further prioritise the six selected agents in Chapter 4, species distribution were modelled with known climatic variables. This was done by using the species known occurrence localities, from both the native and where applicable invaded ranges, to identify which species that would best match with South Africa’s climate. The study showed that O. dorsalis is best suited to survive in South Africa, followed by O. robiniae and then M. robiniella. Collected data aided in the introduction of the prioritised O. robiniae into South African quarantine facilities. Unfortunately, despite several attempts, cultures could not be established, making conventional host specificity testing impossible. Thus, in Chapter 5 we aimed to determine the potential host range of the midge using information from experts in the field of galling insects, literature surveys, agricultural pest lists, and social science platforms coupled with native and invaded range surveys. The list of non-target species to consider as potential hosts was refined by developing phylogenetic trees of closely related Fabaceae that share the same distribution (native and invaded) as R. pseudoacacia. Through the available information gathered, and field surveys of these species, O. robiniae has not been shown to utilise any species, other than those from the Robinoid clade. In addition, the midge has also never been recorded on a number of closely related leguminous fodder and horticultural species growing in close proximity at high densities to R. pseudoacacia - suggesting negligible risk to South African growers of the same species. Host-specificity assessments through field surveys can be regarded as one of the best indicators of the ecological host range, however, this information is difficult to quantify and infrequently available, thus seldom used when determining the safety of a candidate biocontrol agent. In this unique study, using the extensive data collected we are able to show that O. robiniae would be potentially safe for release in South Africa. However, open field tests exposing closely related non-target plant species under natural and semi-natural conditions are planned in Switzerland over the next two years aiming to confirm these conclusions. By identifying and prioritizing potential biological control agents, this research contributes to the development of a targeted and sustainable solution for managing R. pseudoacacia in South Africa. The economic implications of successful biological control include reduced costs associated with invasive species management and ecosystem restoration. Additionally, by mitigating the negative ecological impacts, the agricultural systems in affected regions stand to benefit from enhanced resilience and productivity. Furthermore, the study's approach of using plant phylogenies and available literature to predict insect specificity offers a valuable methodological contribution to the broader field of weed biological control. This methodology can be adapted and applied to other invasive species, providing a framework for efficient and informed decision-making in weed management strategies. In essence, this research not only addresses the specific challenges posed by R. pseudoacacia in South Africa but also provides a template for tackling similar issues in different geographical contexts, thereby contributing to global efforts in sustainable agriculture and environmental conservation. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Wolmarans, Abigail
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435716 , vital:73181
- Description: Robinia pseudoacacia (Fabaceae) is a deciduous tree native to the Appalachian Mountains of North America but has become naturalised and invasive in other countries such as temperate North America, Europe, Australia, and Southern Africa. In South Africa the tree is classified as a category 1B invasive alien under the National Environmental Management Act (NEMBA), which stipulates the species requires some form of control as it has already caused extensive negative ecological and economic impacts. In the invaded range the tree creates monocultures that displace native species and spreads rapidly from suckering roots, making it a proficient invader. The South Africa plant prioritisation system suggests R. pseudoacacia is in the top three species which should be considered for classical weed biological control in South Africa. This thesis investigates which insects known to be associated with tree should be prioritised as candidate agents, as well as offering interesting insights into prioritising insects for weed biological control and using plant phylogenies and available literature to predict insect specificity. To ensure that no candidate biological control agents were already present in South Africa as well as to prioritise which guilds of the tree to prioritise for potential biological control, pre-release surveys were conducted across nine sites where the tree has invaded South Africa. It was found that no insects from the native range of R. pseudoacacia were present in South Africa. Seed surveys revealed that generalist insects attack a sizable proportion (68 %) of the seeds on the trees. In combination with a low seed soil bank (15.8 %) this suggests that seed- feeding agents may be helpful, however, candidate agents which damage leaves should be prioritised due to R. pseudoacacia relying heavily upon vegetative reproduction and much less on sexual reproduction. Leaves may therefor reduce the spread of these invasive trees. The insect assemblages in the native range of R. pseudoacacia are well understood. In addition, several associated insects have unintentionally followed the tree on its global spread, where they are often regarded as pests. The third chapter is therefore aimed at prioritising the known insects associated with the tree in both the native and invaded range. Literature surveys and Harris (1973) prioritisation systems were used to prioritise close to 64 candidate biological control agents down to three foliage- feeding agents, namely Odontota dorsalis (Coleoptera, Chrysomelidae), Macrosaccus robiniella (Lepidoptera, Gracillariidae) and Obolodiplosis robiniae (Diptera, Cecidomyiidae). To further prioritise the six selected agents in Chapter 4, species distribution were modelled with known climatic variables. This was done by using the species known occurrence localities, from both the native and where applicable invaded ranges, to identify which species that would best match with South Africa’s climate. The study showed that O. dorsalis is best suited to survive in South Africa, followed by O. robiniae and then M. robiniella. Collected data aided in the introduction of the prioritised O. robiniae into South African quarantine facilities. Unfortunately, despite several attempts, cultures could not be established, making conventional host specificity testing impossible. Thus, in Chapter 5 we aimed to determine the potential host range of the midge using information from experts in the field of galling insects, literature surveys, agricultural pest lists, and social science platforms coupled with native and invaded range surveys. The list of non-target species to consider as potential hosts was refined by developing phylogenetic trees of closely related Fabaceae that share the same distribution (native and invaded) as R. pseudoacacia. Through the available information gathered, and field surveys of these species, O. robiniae has not been shown to utilise any species, other than those from the Robinoid clade. In addition, the midge has also never been recorded on a number of closely related leguminous fodder and horticultural species growing in close proximity at high densities to R. pseudoacacia - suggesting negligible risk to South African growers of the same species. Host-specificity assessments through field surveys can be regarded as one of the best indicators of the ecological host range, however, this information is difficult to quantify and infrequently available, thus seldom used when determining the safety of a candidate biocontrol agent. In this unique study, using the extensive data collected we are able to show that O. robiniae would be potentially safe for release in South Africa. However, open field tests exposing closely related non-target plant species under natural and semi-natural conditions are planned in Switzerland over the next two years aiming to confirm these conclusions. By identifying and prioritizing potential biological control agents, this research contributes to the development of a targeted and sustainable solution for managing R. pseudoacacia in South Africa. The economic implications of successful biological control include reduced costs associated with invasive species management and ecosystem restoration. Additionally, by mitigating the negative ecological impacts, the agricultural systems in affected regions stand to benefit from enhanced resilience and productivity. Furthermore, the study's approach of using plant phylogenies and available literature to predict insect specificity offers a valuable methodological contribution to the broader field of weed biological control. This methodology can be adapted and applied to other invasive species, providing a framework for efficient and informed decision-making in weed management strategies. In essence, this research not only addresses the specific challenges posed by R. pseudoacacia in South Africa but also provides a template for tackling similar issues in different geographical contexts, thereby contributing to global efforts in sustainable agriculture and environmental conservation. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
Ecological impacts of photoautotrophic Euendoliths on South African mussel beds
- Dievart, Alexia Madeleine Angèle
- Authors: Dievart, Alexia Madeleine Angèle
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435650 , vital:73176 , DOI 10.21504/10962/435650
- Description: Aphytis lingnanensis was reared and tested in South Africa in the early 2000s for augmentation against red scale on citrus and was found to be ineffective. Aphytis melinus is now commercially available and it is important that the efficacy of augmentation thereof on red scale is determined locally. Field trials, fitness assessments and molecular identification on A. melinus from two insectaries were done. Field trials was done in seven, five and six pairs of comparable release and control orchards across the Eastern and Western Cape during the seasons of 2019/2020, 2020/2021 and 2021/2022 respectively. Red scale infestation was monitored and a sample of 20 infested fruit from each orchard was randomly collected every four weeks. Aphytis spp. responsible for parasitism were identified and the percentage parasitism recorded. Results of this study of field trials suggest that the augmentation of A. melinus did not significantly increase the level of parasitism above that of the untreated control. Five repetitions with six replicates of flight and longevity tests were performed with wasps from each insectary. Wasps in the longevity test from two insectaries were kept at 23 °C and 65% RH with honey. Flight tests were performed in tubes of 16 by 30 cm, with a light above a clear, sticky ceiling at 23 °C and 65% RH. On average in five replicates, 65%, 33% and 17% A. melinus wasps were alive on day one, five and 10 respectively. The overall sex ratio was 1.58 for females to males, but 1.05, 2.19 and 2.66 for non-flyers, non-crawlers, crawlers, and flyers respectively. In flight tests for both insectaries combined, only 36.97% of wasps could initiate flight in 24 h while 56.96% remained on the tube floor, and 6.05% attempted to crawl upwards. No significant differences in flight performance were recorded between the two insectaries. Wasps from the local insectary lived significantly longer during the longevity tests but were shorter in transit than wasps from the overseas insectary. COI genes were sequenced and compared against Genbank sequences using BLAST. Molecular identifications did not confirm morphological identifications for all species, indicating unexpected genetic complexity. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Dievart, Alexia Madeleine Angèle
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435650 , vital:73176 , DOI 10.21504/10962/435650
- Description: Aphytis lingnanensis was reared and tested in South Africa in the early 2000s for augmentation against red scale on citrus and was found to be ineffective. Aphytis melinus is now commercially available and it is important that the efficacy of augmentation thereof on red scale is determined locally. Field trials, fitness assessments and molecular identification on A. melinus from two insectaries were done. Field trials was done in seven, five and six pairs of comparable release and control orchards across the Eastern and Western Cape during the seasons of 2019/2020, 2020/2021 and 2021/2022 respectively. Red scale infestation was monitored and a sample of 20 infested fruit from each orchard was randomly collected every four weeks. Aphytis spp. responsible for parasitism were identified and the percentage parasitism recorded. Results of this study of field trials suggest that the augmentation of A. melinus did not significantly increase the level of parasitism above that of the untreated control. Five repetitions with six replicates of flight and longevity tests were performed with wasps from each insectary. Wasps in the longevity test from two insectaries were kept at 23 °C and 65% RH with honey. Flight tests were performed in tubes of 16 by 30 cm, with a light above a clear, sticky ceiling at 23 °C and 65% RH. On average in five replicates, 65%, 33% and 17% A. melinus wasps were alive on day one, five and 10 respectively. The overall sex ratio was 1.58 for females to males, but 1.05, 2.19 and 2.66 for non-flyers, non-crawlers, crawlers, and flyers respectively. In flight tests for both insectaries combined, only 36.97% of wasps could initiate flight in 24 h while 56.96% remained on the tube floor, and 6.05% attempted to crawl upwards. No significant differences in flight performance were recorded between the two insectaries. Wasps from the local insectary lived significantly longer during the longevity tests but were shorter in transit than wasps from the overseas insectary. COI genes were sequenced and compared against Genbank sequences using BLAST. Molecular identifications did not confirm morphological identifications for all species, indicating unexpected genetic complexity. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
Plankton and macroinvertebrate dynamics in the Khakhea–Bray transboundary aquifer region
- Mungenge, Chipo Perseverance
- Authors: Mungenge, Chipo Perseverance
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435674 , vital:73178 , DOI 10.21504/10962/435674
- Description: Temporary wetlands are prevalent in semi–arid and arid climates across the globe and harbour unique faunal assemblages that significantly contribute to regional aquatic biodiversity. This study aims to enhance our understanding of the ecological dynamics of temporary wetland ecosystems, focusing on plankton dynamics, large branchiopod diversity, trophic dynamics, water quality and the impacts of freshwater salinisation in temporary pans in the Khakhea Bray Transboundary aquifer region in the North west Province, South Africa. This body of work represents field, laboratory and writing components which span the period May 2021 to December 2023. The results from this study revealed seasonal patterns in plankton diversity with a winter peak in phytoplankton diversity dominated by Zygnematophyceae species, while Chlorophyceae were dominant in summer. Zooplankton diversity was high in summer as compared to winter, with both Rotifera and Copepoda dominant in both seasons. Six large branchiopod species were found in the region, and three of these were new distribution records for the North west Province, including the first record of Phallocryptus spinosa in the salt pan that was sampled in summer. Large branchiopod diversity was mainly influenced by water temperature and phosphorous in summer, while sediment sodium influenced the diversity in winter. The stable isotope analyses used to determine trophic dynamics in these temporary pans revealed that the food web had four trophic levels, with the top predators being the notonectids Anisops sp. The dominant consumers were predatory insects such as Sigara sp., Anisops sp., Lestes sp., Rhantus sp. and Cybister sp. adults and larvae, as well as detritivorous Tomopterna sp. tadpoles. High trophic niche overlaps were found between the notonectids and the dytiscids. These temporary pans are susceptible to anthropogenic impacts, and disturbed pans were found to have elevated pH, ammonium, phosphates and dissolved oxygen compared to the undisturbed pans. A strong positive relationship was observed between chl–a and temperature, pH, dissolved oxygen, phosphates and ammonium. Chlorophyll–a concentration increased as surface area and the distance from kraals, buildings and latrines decreased. Freshwater salinisation was found to cause notable shifts in abiotic factors and benthic phytoplankton communities, favouring the proliferation of saline–tolerant diatom species at the cost of more sensitive taxa. The study also revealed that in interaction with salinisation, time also exerted a notable influence on shaping the benthic phytoplankton community. Salinity levels of 2.5 ppt and above led to significant decreases in emergent taxa richness and abundance, with Spinicaudata and Ostracoda being the most sensitive taxa to high salinities. There was a limited effect on community hatching phenology dynamics from salinity. This suggests that the main impact of salinisation in these systems will be reductions in hatching success and, hence, reduced recruitment. The study highlights the vulnerability of temporary pan ecosystems to anthropogenic influences and the complexities of interactions of organisms and the environmental conditions in these systems. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Mungenge, Chipo Perseverance
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435674 , vital:73178 , DOI 10.21504/10962/435674
- Description: Temporary wetlands are prevalent in semi–arid and arid climates across the globe and harbour unique faunal assemblages that significantly contribute to regional aquatic biodiversity. This study aims to enhance our understanding of the ecological dynamics of temporary wetland ecosystems, focusing on plankton dynamics, large branchiopod diversity, trophic dynamics, water quality and the impacts of freshwater salinisation in temporary pans in the Khakhea Bray Transboundary aquifer region in the North west Province, South Africa. This body of work represents field, laboratory and writing components which span the period May 2021 to December 2023. The results from this study revealed seasonal patterns in plankton diversity with a winter peak in phytoplankton diversity dominated by Zygnematophyceae species, while Chlorophyceae were dominant in summer. Zooplankton diversity was high in summer as compared to winter, with both Rotifera and Copepoda dominant in both seasons. Six large branchiopod species were found in the region, and three of these were new distribution records for the North west Province, including the first record of Phallocryptus spinosa in the salt pan that was sampled in summer. Large branchiopod diversity was mainly influenced by water temperature and phosphorous in summer, while sediment sodium influenced the diversity in winter. The stable isotope analyses used to determine trophic dynamics in these temporary pans revealed that the food web had four trophic levels, with the top predators being the notonectids Anisops sp. The dominant consumers were predatory insects such as Sigara sp., Anisops sp., Lestes sp., Rhantus sp. and Cybister sp. adults and larvae, as well as detritivorous Tomopterna sp. tadpoles. High trophic niche overlaps were found between the notonectids and the dytiscids. These temporary pans are susceptible to anthropogenic impacts, and disturbed pans were found to have elevated pH, ammonium, phosphates and dissolved oxygen compared to the undisturbed pans. A strong positive relationship was observed between chl–a and temperature, pH, dissolved oxygen, phosphates and ammonium. Chlorophyll–a concentration increased as surface area and the distance from kraals, buildings and latrines decreased. Freshwater salinisation was found to cause notable shifts in abiotic factors and benthic phytoplankton communities, favouring the proliferation of saline–tolerant diatom species at the cost of more sensitive taxa. The study also revealed that in interaction with salinisation, time also exerted a notable influence on shaping the benthic phytoplankton community. Salinity levels of 2.5 ppt and above led to significant decreases in emergent taxa richness and abundance, with Spinicaudata and Ostracoda being the most sensitive taxa to high salinities. There was a limited effect on community hatching phenology dynamics from salinity. This suggests that the main impact of salinisation in these systems will be reductions in hatching success and, hence, reduced recruitment. The study highlights the vulnerability of temporary pan ecosystems to anthropogenic influences and the complexities of interactions of organisms and the environmental conditions in these systems. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
The enemy release hypothesis and beyond: Lagarosiphon major invasion dynamics and management options for New Zealand using native natural enemies from South Africa
- Authors: Baso, Nompumelelo Catherine
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435627 , vital:73174 , DOI 10.21504/10962/435627
- Description: Numerous scientific investigations have demonstrated the destructive impact that exotic species can have on ecosystem services beyond a specific threshold. There are many explanations for why introduced plants are likely to be more successful outside their native range. One such explanation is offered by the Enemy Release Hypothesis (ERH), which states that plants automatically become superior competitors outside of their natural range due to release from top-down stressors (herbivory, parasites, and diseases) that is evident in the absence of their natural enemies. The underlying assumption of the ERH is that natural enemies are important regulators of plant species populations, and that the pressures from these natural enemies are felt more readily by native species compared to alien plants. Consequently, in the absence of such pressures, the ERH assumes that exotic plants can allocate more resources towards growth and reproduction, while effectively maintaining accumulated biomass. Classical biological control has previously been cited as evidence for the enemy release hypothesis. Therefore, the overarching aim and theme of this thesis was to investigate the role of ERH on the invasiveness of Lagarosiphon major (Ridl.) Moss ex Wager (Hydrocharitaceae) in New Zealand. Firstly, a literature search and a meta-analysis was used to synthesize existing studies in order to test for general applicability of this hypothesis to aquatic plant invasions. Furthermore, an empirical investigation was conducted in order to directly quantify enemy release in L. major populations invaded areas of New Zealand. To achieve this, various plant parameters of this plant, overall macrophyte and invertebrate diversity were measured and compared between sites in the native range in South Africa and the invaded areas in New Zealand. Although the meta-analysis showed variable evidence for this hypothesis depending on various modulating factors such as study type, plant growth form and measured parameters, for L. major, there was strong evidence of enemy release. The biogeographical comparisons showed that L. major exhibited increased fitness in most of the invaded sites, marked by elevated biomass accumulation, significantly higher shoot production, and the displacement of native plant species. The observed fitness advantages were directly correlated to a decrease in herbivory diversity and pressure upon the plant's introduction to New Zealand. Unlike the native populations, which contend with the presence of at least four co-occurring herbivores, including specialist herbivores, the invaded range had a substantially lower herbivore diversity, with only Hygraula nitens Butler (Lepidoptera: Crambidae) syn. Nymphula nitens, significantly damaging L. major. These findings emphasize the importance of understanding invasion ecology and theories such as ERH in order to advance aquatic plant management and also present valuable insights for developing effective strategies to mitigate the impact of invasive alien species on aquatic ecosystems. Specifically, results from the empirical investigation provide evidence in support of the ERH and highlight the suitability of implementing biological control strategies to manage the L. major invasion in New Zealand. Previous studies have shown the suitability of two specialist herbivores, Hydrellia lagarosiphon Deeming (Diptera: Ephydridae), and Polypedilum tuburcinatum Andersen (Diptera: Chironomidae), as potential biological control agents. This control strategy presents a sustainable and ecologically responsible approach, promoting coexistence between exotic plants and native species rather than displacement through competitive exclusion. With the apparent dominance of L. major at various New Zealand localities, the subsequent objective of this thesis was to investigate the competitive interactions between L. major and another invasive Hydrocharitaceae, Egeria densa Planchon, as driven by herbivory. Combinations of two host specific Ephydrid flies, H. lagarosiphon and H. egeriae, were used at eight different factorial combination of planting densities. The analysis of plant parameters and the application of inverse linear models revealed that L. major often exhibits relatively higher fitness, especially in low monoculture treatments when the two insects were isolated. However, multiple inverse linear models revealed that actual competitive outcomes are dependent on factors such as initial plant density and herbivory regime, with competitive interactions generally being mild. Nevertheless, the presence of H. lagarosiphon resulted in facilitation of E. densa growth. Thus, even at lower densities, these insects still had an impact on the observed interactions, further emphasizing suitability as damaging biological control agents. Lastly, focusing on the abiotic component of L. major invasion, Species Distribution Models (SDMs) were employed to map potential suitable habitat for this species, as well as predict the consequences of climate change on this. Correlative and mechanistic modelling was also used to simulate suitable habitat for potential biological control agents, thus addressing the potential for mismatches between host plant distribution and insect suitable range. The Maximum Entropy Species Distribution Modelling (MaxEnt) algorithm revealed that more than 90% of all freshwater ecosystems in New Zealand are susceptible to L. major invasion, with suitability projected to expand further under future climate scenarios. Moreover, correlative modelling using this method suggests limited suitable habitat for both herbivores. However, degree-day modelling, which also takes into account the physiological requirements, showed that H. lagarosiphon has the potential to produce viable populations in several parts of New Zealand. Overall, this thesis explored the intricate web of biotic and abiotic factors influencing the success of L. major outside its native range. The results emphasize the potential impacts of climate change on the invasion potential and management strategies for L. major. The findings also advocate for the implementation of sustainable and ecologically sound management solutions, such as biological control, to manage this species. , Thesis (PhD) -- Faculty of Science, Botany, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Baso, Nompumelelo Catherine
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435627 , vital:73174 , DOI 10.21504/10962/435627
- Description: Numerous scientific investigations have demonstrated the destructive impact that exotic species can have on ecosystem services beyond a specific threshold. There are many explanations for why introduced plants are likely to be more successful outside their native range. One such explanation is offered by the Enemy Release Hypothesis (ERH), which states that plants automatically become superior competitors outside of their natural range due to release from top-down stressors (herbivory, parasites, and diseases) that is evident in the absence of their natural enemies. The underlying assumption of the ERH is that natural enemies are important regulators of plant species populations, and that the pressures from these natural enemies are felt more readily by native species compared to alien plants. Consequently, in the absence of such pressures, the ERH assumes that exotic plants can allocate more resources towards growth and reproduction, while effectively maintaining accumulated biomass. Classical biological control has previously been cited as evidence for the enemy release hypothesis. Therefore, the overarching aim and theme of this thesis was to investigate the role of ERH on the invasiveness of Lagarosiphon major (Ridl.) Moss ex Wager (Hydrocharitaceae) in New Zealand. Firstly, a literature search and a meta-analysis was used to synthesize existing studies in order to test for general applicability of this hypothesis to aquatic plant invasions. Furthermore, an empirical investigation was conducted in order to directly quantify enemy release in L. major populations invaded areas of New Zealand. To achieve this, various plant parameters of this plant, overall macrophyte and invertebrate diversity were measured and compared between sites in the native range in South Africa and the invaded areas in New Zealand. Although the meta-analysis showed variable evidence for this hypothesis depending on various modulating factors such as study type, plant growth form and measured parameters, for L. major, there was strong evidence of enemy release. The biogeographical comparisons showed that L. major exhibited increased fitness in most of the invaded sites, marked by elevated biomass accumulation, significantly higher shoot production, and the displacement of native plant species. The observed fitness advantages were directly correlated to a decrease in herbivory diversity and pressure upon the plant's introduction to New Zealand. Unlike the native populations, which contend with the presence of at least four co-occurring herbivores, including specialist herbivores, the invaded range had a substantially lower herbivore diversity, with only Hygraula nitens Butler (Lepidoptera: Crambidae) syn. Nymphula nitens, significantly damaging L. major. These findings emphasize the importance of understanding invasion ecology and theories such as ERH in order to advance aquatic plant management and also present valuable insights for developing effective strategies to mitigate the impact of invasive alien species on aquatic ecosystems. Specifically, results from the empirical investigation provide evidence in support of the ERH and highlight the suitability of implementing biological control strategies to manage the L. major invasion in New Zealand. Previous studies have shown the suitability of two specialist herbivores, Hydrellia lagarosiphon Deeming (Diptera: Ephydridae), and Polypedilum tuburcinatum Andersen (Diptera: Chironomidae), as potential biological control agents. This control strategy presents a sustainable and ecologically responsible approach, promoting coexistence between exotic plants and native species rather than displacement through competitive exclusion. With the apparent dominance of L. major at various New Zealand localities, the subsequent objective of this thesis was to investigate the competitive interactions between L. major and another invasive Hydrocharitaceae, Egeria densa Planchon, as driven by herbivory. Combinations of two host specific Ephydrid flies, H. lagarosiphon and H. egeriae, were used at eight different factorial combination of planting densities. The analysis of plant parameters and the application of inverse linear models revealed that L. major often exhibits relatively higher fitness, especially in low monoculture treatments when the two insects were isolated. However, multiple inverse linear models revealed that actual competitive outcomes are dependent on factors such as initial plant density and herbivory regime, with competitive interactions generally being mild. Nevertheless, the presence of H. lagarosiphon resulted in facilitation of E. densa growth. Thus, even at lower densities, these insects still had an impact on the observed interactions, further emphasizing suitability as damaging biological control agents. Lastly, focusing on the abiotic component of L. major invasion, Species Distribution Models (SDMs) were employed to map potential suitable habitat for this species, as well as predict the consequences of climate change on this. Correlative and mechanistic modelling was also used to simulate suitable habitat for potential biological control agents, thus addressing the potential for mismatches between host plant distribution and insect suitable range. The Maximum Entropy Species Distribution Modelling (MaxEnt) algorithm revealed that more than 90% of all freshwater ecosystems in New Zealand are susceptible to L. major invasion, with suitability projected to expand further under future climate scenarios. Moreover, correlative modelling using this method suggests limited suitable habitat for both herbivores. However, degree-day modelling, which also takes into account the physiological requirements, showed that H. lagarosiphon has the potential to produce viable populations in several parts of New Zealand. Overall, this thesis explored the intricate web of biotic and abiotic factors influencing the success of L. major outside its native range. The results emphasize the potential impacts of climate change on the invasion potential and management strategies for L. major. The findings also advocate for the implementation of sustainable and ecologically sound management solutions, such as biological control, to manage this species. , Thesis (PhD) -- Faculty of Science, Botany, 2024
- Full Text:
- Date Issued: 2024-04-05
The impacts of bottom-up and top-down drivers in shaping the herbivore community in Pafuri, Kruger National Park, South Africa
- Authors: Walker, Gareth Alexander
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435703 , vital:73180 , DOI 10.21504/10962/435703
- Description: Globally, terrestrial mammal populations are facing critical population declines and range contractions owing to habitat fragmentation and destruction, wildlife overexploitation, and climate change driven by expansion of the human population. Mammalian herbivores are integral for maintaining ecosystem structure and functionality. They do this this through herbivory, by acting as prey and cycling soil nutrients. The impacts of herbivores on ecosystems, however, vary with their spatial occupancy which is influenced by interacting bottom-up and top-down factors. Modelling the drivers of herbivore communities is no trivial task given the myriad of potential bottom-up and top-down factors, and the interactions between the two, as well as the species-specific variations in intrinsic functional traits (e.g., foraging strategy, body size, metabolic rate, etc.) influencing herbivore responses (e.g., social structure, space-use, activity patterns, etc.) to these drivers. Consequently, few studies have attempted to model both bottom-up and top-down drivers in structuring herbivore communities, particularly in an African context where predator-prey guilds include multiple species, exposed to high levels of human activity. Therefore, the overarching aim of my research was to quantify the relative effects of both bottom-up and top-down factors driving the herbivore community in the northern Pafuri region of Kruger National Park, South Africa. I utilized a combination of field (i.e., camera trap and vegetation surveys) and analytical (i.e., stable carbon isotopes from faeces and plants) techniques in conjunction with geospatial data to evaluate the impacts of bottom-up (i.e., forage quantity, quality, and water availability) and top-down (i.e., predation and anthropogenic risks) factors on herbivore spatial occupancy and activity patterns. Herbivore responses to bottom-up and top-down factors were species-specific, even among members of the same feeding guild. Specifically, I found that herbivores (varying in body size and foraging strategy) displayed temporal, spatial and in some instances, dietary shifts that reflect species-specific, ecological trade-offs between resource acquisition, and predator and human avoidance. For example, kudu (Tragelaphus strepsiceros) displayed temporal and spatial avoidance of predators and humans, and exhibited previously undocumented levels of seasonal dietary shifts which suggests that the species traded forage acquisition for reduced predation and anthropogenic risks. Further, high levels of human activity appeared to eclipse the risks associated with natural predators resulting in human induced landscapes of fear. For example, warthogs (Phacochoerus africanus) and zebra (Equus quagga) occupied habitats with higher predation risks, but displayed spatial avoidance of nature reserve boundaries which were synonymous with high levels of bushmeat poaching. Most studies focussing on the impacts of bottom-up and top-down drivers neglect to consider the roles that humans play in structuring ecological communities. The results of my thesis, however, emphasize the importance of including anthropogenic drivers when investigating the roles that various bottom-up and top-down factors play in shaping ecological communities. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Walker, Gareth Alexander
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435703 , vital:73180 , DOI 10.21504/10962/435703
- Description: Globally, terrestrial mammal populations are facing critical population declines and range contractions owing to habitat fragmentation and destruction, wildlife overexploitation, and climate change driven by expansion of the human population. Mammalian herbivores are integral for maintaining ecosystem structure and functionality. They do this this through herbivory, by acting as prey and cycling soil nutrients. The impacts of herbivores on ecosystems, however, vary with their spatial occupancy which is influenced by interacting bottom-up and top-down factors. Modelling the drivers of herbivore communities is no trivial task given the myriad of potential bottom-up and top-down factors, and the interactions between the two, as well as the species-specific variations in intrinsic functional traits (e.g., foraging strategy, body size, metabolic rate, etc.) influencing herbivore responses (e.g., social structure, space-use, activity patterns, etc.) to these drivers. Consequently, few studies have attempted to model both bottom-up and top-down drivers in structuring herbivore communities, particularly in an African context where predator-prey guilds include multiple species, exposed to high levels of human activity. Therefore, the overarching aim of my research was to quantify the relative effects of both bottom-up and top-down factors driving the herbivore community in the northern Pafuri region of Kruger National Park, South Africa. I utilized a combination of field (i.e., camera trap and vegetation surveys) and analytical (i.e., stable carbon isotopes from faeces and plants) techniques in conjunction with geospatial data to evaluate the impacts of bottom-up (i.e., forage quantity, quality, and water availability) and top-down (i.e., predation and anthropogenic risks) factors on herbivore spatial occupancy and activity patterns. Herbivore responses to bottom-up and top-down factors were species-specific, even among members of the same feeding guild. Specifically, I found that herbivores (varying in body size and foraging strategy) displayed temporal, spatial and in some instances, dietary shifts that reflect species-specific, ecological trade-offs between resource acquisition, and predator and human avoidance. For example, kudu (Tragelaphus strepsiceros) displayed temporal and spatial avoidance of predators and humans, and exhibited previously undocumented levels of seasonal dietary shifts which suggests that the species traded forage acquisition for reduced predation and anthropogenic risks. Further, high levels of human activity appeared to eclipse the risks associated with natural predators resulting in human induced landscapes of fear. For example, warthogs (Phacochoerus africanus) and zebra (Equus quagga) occupied habitats with higher predation risks, but displayed spatial avoidance of nature reserve boundaries which were synonymous with high levels of bushmeat poaching. Most studies focussing on the impacts of bottom-up and top-down drivers neglect to consider the roles that humans play in structuring ecological communities. The results of my thesis, however, emphasize the importance of including anthropogenic drivers when investigating the roles that various bottom-up and top-down factors play in shaping ecological communities. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
The influence of the physical environment on invertebrate larval transport, settlement and recruitment with insights on early-stage physiological performance
- Authors: Duna, Oliver Olwethu
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435663 , vital:73177 , DOI 10.21504/10962/435663
- Description: Most marine benthic organisms have a biphasic life cycle whereby the larvae are pelagic, and their distribution, transport and settlement are largely controlled by environmental factors. Among these factors, hydrodynamics have key direct effects. Nearshore water hydrodynamics are strongly influenced by wind. This study investigated whether wind indirectly affects the distribution, settlement and recruitment of invertebrate marine larvae. Additionally, larvae are exposed to a more constant, benign environment than they will experience after settlement, and therefore the possible effects of larval thermal history on the physiological plasticity of settled organisms was also estimated for possible long-term insights into population dynamics. Four sites, two on the western and two on the eastern side of Algoa Bay in Gqeberha (formerly known as Port Elizabeth), South Africa, were chosen for larval collection. Sites at opposite ends of the bay were selected as they were towards either side of the dominant wind directions in this region. At each site, two sampling stations were identified at 300 and 900 metres offshore, with station replicates 300 metres apart. Sampling of marine invertebrate larvae was conducted after two days of westerly or easterly winds at either of the two western or eastern sites. The number of hours of unidirectional wind determined the prevalent wind on the two days prior to sampling. Samples were collected with a plankton pump at three depths; surface, mid-depth and bottom. Simultaneously with plankton sampling, water properties (fluorescence, temperature, zonal and meridional flow, salinity and oxygen) were measured. Settlement/recruitment samples of mussels and barnacles were collected at six sites, two at either edge of the bay and two within the center of the bay. Plastic scouring pads and PVC plastic plates covered with safety-walk, placed at least 30 cm from each other, were used to collect settlers/recruits of mussels and barnacles, respectively. The pads and plates were replaced on a monthly basis for 14 months to quantify monthly settlement/recruitment. At four of the six sites used for quantifying settlement/recruitment, settlers and recruits were collected to measure the physiological responses of these two ontogenetic stages (settlers and recruits) to acute temperature variations which they might experience in the intertidal zone. Three temperature loggers were used to record real time temperature variation at each site over the period (one month) in which the artificial collectors were in position. Factorial ANOVA was used to investigate the effects of wind, depth, site, and distance from the shore on the abundance of larvae in the water column, as well as the effects of month and site on settlement/recruitment. Additionally, multiple regression analyses were used to investigate the effects of physical parameters, including upwelling and dissipation of turbulent kinetic energy, on the abundance of both larvae, settlers and recruits. Distance-based linear models and redundancy analyses were also carried out on the abundances of invertebrate larvae. Correlation analyses were performed to investigate the effect of the number of hours of directional wind on settlement. Lastly, correlation analyses between wind and currents were carried out. The results revealed a link between winds and currents, with wind speed directly proportional to surface current speed, which, as expected, decreased with depth. Current direction was, however, not perfectly aligned with wind direction. Larval distribution, settlement and recruitment were largely associated with the nearshore dissipation of turbulent kinetic energy and upwelling. Thus, overall larval, settler and recruit abundances were indirectly affected by wind. Physiologically, there was no significant difference in oxygen consumption between the juvenile ontogenetic stages (settlers and recruits) of mussels. Recruits exposed to average and maximum temperatures, however, consumed more oxygen than those exposed to low temperatures. Wind and wind-mediated currents as well as temperature have been shown to shape the distribution and shore supply of larvae, and this study contributes to the broad knowledge of population dynamics and replenishment, and the tight relation of abiotic factors affecting biological processes on the shore. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
- Authors: Duna, Oliver Olwethu
- Date: 2024-04-05
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435663 , vital:73177 , DOI 10.21504/10962/435663
- Description: Most marine benthic organisms have a biphasic life cycle whereby the larvae are pelagic, and their distribution, transport and settlement are largely controlled by environmental factors. Among these factors, hydrodynamics have key direct effects. Nearshore water hydrodynamics are strongly influenced by wind. This study investigated whether wind indirectly affects the distribution, settlement and recruitment of invertebrate marine larvae. Additionally, larvae are exposed to a more constant, benign environment than they will experience after settlement, and therefore the possible effects of larval thermal history on the physiological plasticity of settled organisms was also estimated for possible long-term insights into population dynamics. Four sites, two on the western and two on the eastern side of Algoa Bay in Gqeberha (formerly known as Port Elizabeth), South Africa, were chosen for larval collection. Sites at opposite ends of the bay were selected as they were towards either side of the dominant wind directions in this region. At each site, two sampling stations were identified at 300 and 900 metres offshore, with station replicates 300 metres apart. Sampling of marine invertebrate larvae was conducted after two days of westerly or easterly winds at either of the two western or eastern sites. The number of hours of unidirectional wind determined the prevalent wind on the two days prior to sampling. Samples were collected with a plankton pump at three depths; surface, mid-depth and bottom. Simultaneously with plankton sampling, water properties (fluorescence, temperature, zonal and meridional flow, salinity and oxygen) were measured. Settlement/recruitment samples of mussels and barnacles were collected at six sites, two at either edge of the bay and two within the center of the bay. Plastic scouring pads and PVC plastic plates covered with safety-walk, placed at least 30 cm from each other, were used to collect settlers/recruits of mussels and barnacles, respectively. The pads and plates were replaced on a monthly basis for 14 months to quantify monthly settlement/recruitment. At four of the six sites used for quantifying settlement/recruitment, settlers and recruits were collected to measure the physiological responses of these two ontogenetic stages (settlers and recruits) to acute temperature variations which they might experience in the intertidal zone. Three temperature loggers were used to record real time temperature variation at each site over the period (one month) in which the artificial collectors were in position. Factorial ANOVA was used to investigate the effects of wind, depth, site, and distance from the shore on the abundance of larvae in the water column, as well as the effects of month and site on settlement/recruitment. Additionally, multiple regression analyses were used to investigate the effects of physical parameters, including upwelling and dissipation of turbulent kinetic energy, on the abundance of both larvae, settlers and recruits. Distance-based linear models and redundancy analyses were also carried out on the abundances of invertebrate larvae. Correlation analyses were performed to investigate the effect of the number of hours of directional wind on settlement. Lastly, correlation analyses between wind and currents were carried out. The results revealed a link between winds and currents, with wind speed directly proportional to surface current speed, which, as expected, decreased with depth. Current direction was, however, not perfectly aligned with wind direction. Larval distribution, settlement and recruitment were largely associated with the nearshore dissipation of turbulent kinetic energy and upwelling. Thus, overall larval, settler and recruit abundances were indirectly affected by wind. Physiologically, there was no significant difference in oxygen consumption between the juvenile ontogenetic stages (settlers and recruits) of mussels. Recruits exposed to average and maximum temperatures, however, consumed more oxygen than those exposed to low temperatures. Wind and wind-mediated currents as well as temperature have been shown to shape the distribution and shore supply of larvae, and this study contributes to the broad knowledge of population dynamics and replenishment, and the tight relation of abiotic factors affecting biological processes on the shore. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-05
A battle of values: analysing the changing attitudes towards African refugees in Europe
- Authors: Mannion, Megan Kate
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435525 , vital:73165
- Description: Cosmopolitanism is a moral perspective that stresses the importance that every human being is an equal and ultimate unit of moral concern. These principles make cosmopolitanism more concerned for and accommodative towards outsiders to a political community. Against the abstraction and universalism of cosmopolitanism, communitarianism emphasizes the role communities play in shaping our individual identities and sees it as justified that the interests and well-being of community members receive priority over those of outsiders. Both these value systems are present in Europe. The question is about which direction the trend has moved in recent decades. This dissertation examines the changing values that inform attitudes toward African refugees in Europe to get at this issue. Have attitudes towards African refugees shifted in a cosmopolitan or a communitarian direction in recent decades? This dissertation examines newspaper articles from The Guardian between 1990 and 2022 to track changes in value. The analysis of these articles uncovered that communitarian values were the most prevalent and stayed the most prevalent from 1990 to 2022. These findings indicate that communitarian values are higher than cosmopolitan values regarding African refugees within the general European context. These findings add to the growing body of knowledge regarding attitude shifts, and they provide a timeline for value changes that can help predict future values and be used in future comparative studies. , Thesis (MA) -- Faculty of Humanities, Political and International Studies, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Mannion, Megan Kate
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435525 , vital:73165
- Description: Cosmopolitanism is a moral perspective that stresses the importance that every human being is an equal and ultimate unit of moral concern. These principles make cosmopolitanism more concerned for and accommodative towards outsiders to a political community. Against the abstraction and universalism of cosmopolitanism, communitarianism emphasizes the role communities play in shaping our individual identities and sees it as justified that the interests and well-being of community members receive priority over those of outsiders. Both these value systems are present in Europe. The question is about which direction the trend has moved in recent decades. This dissertation examines the changing values that inform attitudes toward African refugees in Europe to get at this issue. Have attitudes towards African refugees shifted in a cosmopolitan or a communitarian direction in recent decades? This dissertation examines newspaper articles from The Guardian between 1990 and 2022 to track changes in value. The analysis of these articles uncovered that communitarian values were the most prevalent and stayed the most prevalent from 1990 to 2022. These findings indicate that communitarian values are higher than cosmopolitan values regarding African refugees within the general European context. These findings add to the growing body of knowledge regarding attitude shifts, and they provide a timeline for value changes that can help predict future values and be used in future comparative studies. , Thesis (MA) -- Faculty of Humanities, Political and International Studies, 2024
- Full Text:
- Date Issued: 2024-04-04
A MIGHTEE Investigation of radio quiet AGN
- Authors: Namane, Neo
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435367 , vital:73151
- Description: This study is aimed at being an overview and investigation of the behaviour and morphology of radio quiet (RQ) active galactic nuclei (AGN) in the radio and optical/near-infrared (NIR) bands. It is hoped that a concise description of the relation that exists between accretion activity and star formation (SF) will be achieved through utilization of multiwavelength astronomy analysis. This analysis includes the processing of data acquired from the MeerKAT International GHz Tiered Extragalactic Exploration survey (MIGHTEE), the Southern African Large Telescope (SALT), the Hyper Suprime Camera (HSC) mounted on the Subaru telescope and the VISTA telescope. In this thesis, several targets were observed using SALT spectroscopy, but a redshift of only one of them was obtained. Lastly, it was established that for the sample of RQ AGN studied, the AGN contribute a large fraction of the radio emission observed. , Thesis (MSc) -- Faculty of Science, Physics and Electronics, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Namane, Neo
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435367 , vital:73151
- Description: This study is aimed at being an overview and investigation of the behaviour and morphology of radio quiet (RQ) active galactic nuclei (AGN) in the radio and optical/near-infrared (NIR) bands. It is hoped that a concise description of the relation that exists between accretion activity and star formation (SF) will be achieved through utilization of multiwavelength astronomy analysis. This analysis includes the processing of data acquired from the MeerKAT International GHz Tiered Extragalactic Exploration survey (MIGHTEE), the Southern African Large Telescope (SALT), the Hyper Suprime Camera (HSC) mounted on the Subaru telescope and the VISTA telescope. In this thesis, several targets were observed using SALT spectroscopy, but a redshift of only one of them was obtained. Lastly, it was established that for the sample of RQ AGN studied, the AGN contribute a large fraction of the radio emission observed. , Thesis (MSc) -- Faculty of Science, Physics and Electronics, 2024
- Full Text:
- Date Issued: 2024-04-04
A systematic literature review of the current approaches to dream work: global and local trends
- Authors: Feris, Eric-John Ricardo
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435440 , vital:73157
- Description: Dreaming is an inherent and universal aspect of human existence that offers a profound window into the realms of consciousness and cognition. It has captivated the human imagination for centuries, prompting various methods and theories to decipher its significance. Global research underscores the enduring importance of dreams in psychotherapy, expressed through diverse methodologies, techniques, and theoretical models. Curiously, within the South African context, a cultural landscape rich in traditional healing, there exists a noticeable lack of research concerning the utilisation of dreams in therapy. This systematic literature dove into 30 articles which remained after applying the systematic literature review strict inclusion and exclusion criteria of the literature searches. From these articles, the review delved into the multifaceted world of dream work, investigated prevailing approaches and themes both on a global scale and within the South African context, and addressed three key research questions: (1) What themes can be identified from a review of current approaches to dream work globally? (2) What themes can be identified from a review of current approaches to dream work locally? (3) What are the practical implications for working with dreams according to global and local themes? A thematic analysis of the literature identified three overarching themes: (1) Psychological approaches to dream work, (2) Psychiatric and medical approaches to dream work, and (3) Socio-cultural approaches to dreams. These findings highlight the necessity of recognising cultural nuances and, underscores the importance of developing a flexible, culturally sensitive framework for dream work, and advocates for the adaptation of global dream work methodologies into culturally specific approaches, fostering psychotherapeutic benefits tailored to the South African context. The research serves as a stepping stone to further investigation into the techniques and approaches of dream work in South Africa, ultimately contributing to the broader field of dream analysis. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Feris, Eric-John Ricardo
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435440 , vital:73157
- Description: Dreaming is an inherent and universal aspect of human existence that offers a profound window into the realms of consciousness and cognition. It has captivated the human imagination for centuries, prompting various methods and theories to decipher its significance. Global research underscores the enduring importance of dreams in psychotherapy, expressed through diverse methodologies, techniques, and theoretical models. Curiously, within the South African context, a cultural landscape rich in traditional healing, there exists a noticeable lack of research concerning the utilisation of dreams in therapy. This systematic literature dove into 30 articles which remained after applying the systematic literature review strict inclusion and exclusion criteria of the literature searches. From these articles, the review delved into the multifaceted world of dream work, investigated prevailing approaches and themes both on a global scale and within the South African context, and addressed three key research questions: (1) What themes can be identified from a review of current approaches to dream work globally? (2) What themes can be identified from a review of current approaches to dream work locally? (3) What are the practical implications for working with dreams according to global and local themes? A thematic analysis of the literature identified three overarching themes: (1) Psychological approaches to dream work, (2) Psychiatric and medical approaches to dream work, and (3) Socio-cultural approaches to dreams. These findings highlight the necessity of recognising cultural nuances and, underscores the importance of developing a flexible, culturally sensitive framework for dream work, and advocates for the adaptation of global dream work methodologies into culturally specific approaches, fostering psychotherapeutic benefits tailored to the South African context. The research serves as a stepping stone to further investigation into the techniques and approaches of dream work in South Africa, ultimately contributing to the broader field of dream analysis. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-04-04
Acacia dealbata invasion and clearing in Upper Tsitsana communal areas of South Africa: human perceptions and ecological impacts
- Authors: Coka, Nwabisa
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434876 , vital:73113
- Description: The number of invasive alien plants in South Africa and globally continue to increase mostly due to increased human movement and climate change. It is estimated that approximately 10 000 hectares of South Africa’s terrestrial land is invaded by invasive alien species. Recent studies have reported that invasion by invasive alien plants cost South Africa billions of Rands every year through loss of water and ecosystem services. Although much has been done to understanding invasion trends, patterns, and processes in South Africa, little is knowns regarding human benefits linked to alien plant invasion as well as human perceptions regarding management interventions, particularly clearing by the national Working for Water programme. This thesis took a socio-ecological approach to assess (i) local people perceptions and knowledge of Acacia dealbata invasion and clearing, and (ii) extent of grazing grass diversity and composition recovery following A. dealbata clearing. To answer the above-mentioned objectives, both qualitative (face-to-face interviews) and quantitative (vegetation surveys) methods were used in grasslands located in upper Tsitsana catchment, South Africa. Results from the 165 interviews conducted in six villages show that most villagers are aware of A. dealbata in the area, but do not know that it is an invasive alien plant. Respondents accrue several benefits from the plant that include firewood (98% across all villages), construction pools (34% across all villages), and shade (3% across all villages). Respondents identified several costs associated with A. dealbata invasion, such as roots damage to houses (37% across all villages), hindering growth of crops (15% across all villages), and takes up yard space (29% across all villages). Most of the villages ranked the effects of A. dealbata on grazing as highly severe. Villages indicated that the Working for Water clearing programme presents them with socio-economic benefits such as employment and money. Some villagers noted that the clearing of A. dealbata in the area restores grazing grass (62% across all villages) and water (32% across all villages). Based on these interview survey results, the study concludes that A. dealbata has both costs and benefits that support local people’s livelihoods; therefore, its management should consider views for local users. Grass surveys conducted in 1 m2 quadrats that were replicated 15 times across four paired A. dealbata cleared and grassland sites showed that the removal of A. dealbata facilitates the recovery of native grasses. Of the 14 different grazable grass species that were identified across all quadrats only one (Bulbostylis sp.) is not palatable to livestock. Although grass cover was significantly (p < 0.05) higher in the grasslands than the cleared patches, grass richness was significantly (p < 0.05) higher in the cleared patches an indication that recovery of different grasses is taking place. Based on these vegetation survey results; the study concludes that recovery of grazing grasses after A. dealbata clearing four years ago is following a positive trajectory as the cleared sites are looking like the grassland sites. Overall, the study recommends that management of A. dealbata in Tsitsana landscape requires a socio-ecological approach to understand user benefits whilst at the same time developing measure to control the plant. The study has provided evidence that A. dealbata clearing facilitates passive restoration of grazing grass and local villages are aware of these restoration benefits. , Thesis (MSc) -- Faculty of Science, Environmental Science, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Coka, Nwabisa
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434876 , vital:73113
- Description: The number of invasive alien plants in South Africa and globally continue to increase mostly due to increased human movement and climate change. It is estimated that approximately 10 000 hectares of South Africa’s terrestrial land is invaded by invasive alien species. Recent studies have reported that invasion by invasive alien plants cost South Africa billions of Rands every year through loss of water and ecosystem services. Although much has been done to understanding invasion trends, patterns, and processes in South Africa, little is knowns regarding human benefits linked to alien plant invasion as well as human perceptions regarding management interventions, particularly clearing by the national Working for Water programme. This thesis took a socio-ecological approach to assess (i) local people perceptions and knowledge of Acacia dealbata invasion and clearing, and (ii) extent of grazing grass diversity and composition recovery following A. dealbata clearing. To answer the above-mentioned objectives, both qualitative (face-to-face interviews) and quantitative (vegetation surveys) methods were used in grasslands located in upper Tsitsana catchment, South Africa. Results from the 165 interviews conducted in six villages show that most villagers are aware of A. dealbata in the area, but do not know that it is an invasive alien plant. Respondents accrue several benefits from the plant that include firewood (98% across all villages), construction pools (34% across all villages), and shade (3% across all villages). Respondents identified several costs associated with A. dealbata invasion, such as roots damage to houses (37% across all villages), hindering growth of crops (15% across all villages), and takes up yard space (29% across all villages). Most of the villages ranked the effects of A. dealbata on grazing as highly severe. Villages indicated that the Working for Water clearing programme presents them with socio-economic benefits such as employment and money. Some villagers noted that the clearing of A. dealbata in the area restores grazing grass (62% across all villages) and water (32% across all villages). Based on these interview survey results, the study concludes that A. dealbata has both costs and benefits that support local people’s livelihoods; therefore, its management should consider views for local users. Grass surveys conducted in 1 m2 quadrats that were replicated 15 times across four paired A. dealbata cleared and grassland sites showed that the removal of A. dealbata facilitates the recovery of native grasses. Of the 14 different grazable grass species that were identified across all quadrats only one (Bulbostylis sp.) is not palatable to livestock. Although grass cover was significantly (p < 0.05) higher in the grasslands than the cleared patches, grass richness was significantly (p < 0.05) higher in the cleared patches an indication that recovery of different grasses is taking place. Based on these vegetation survey results; the study concludes that recovery of grazing grasses after A. dealbata clearing four years ago is following a positive trajectory as the cleared sites are looking like the grassland sites. Overall, the study recommends that management of A. dealbata in Tsitsana landscape requires a socio-ecological approach to understand user benefits whilst at the same time developing measure to control the plant. The study has provided evidence that A. dealbata clearing facilitates passive restoration of grazing grass and local villages are aware of these restoration benefits. , Thesis (MSc) -- Faculty of Science, Environmental Science, 2024
- Full Text:
- Date Issued: 2024-04-04
Application of the modified pitman and swat models for groundwater recharge estimation in the upstream area of the Uitenhage artesian basin, South Africa
- Authors: Wasswa, Peter
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435400 , vital:73154
- Description: The world's most plentiful source of freshwater is thought to be groundwater. During extended dry times, it serves as an essential storage component and guards against environmental catastrophes. Despite its critical functions in the aforementioned scenarios, it is often insufficiently understood and inadequately managed. As a result, it calls for the adoption of integrated methods to comprehend the dynamics of groundwater recharge. Thus, the current study evaluated the applicability and suitability of the Modified Pitman and SWAT models for groundwater recharge estimation in the upstream area of UAB for the period that spanned from 1993 to 2021. It was achieved by using a qualitative conceptual-perceptual model to inform the two hydrological models, Modified Pitman, and SWAT. The developed qualitative conceptual-perceptual model depicted the dominancy of irregularly folded and fractured TMG rock outcrops coupled with fault systems in the upstream area. In the downward section, TMG is overlaid by the aquiclude from the Uitenhage Group which is responsible for the artesian conditions. Groundwater potential zones were classified as Poor, Fair, Good, and Excellent, with 65.4% and 8.7% of the upstream area attributed to Good and Excellent zones respectively. Both Modified Pitman and SWAT predicted decreasing rates of groundwater recharge in the upstream area over time, though Mann-Kendal trend tests done at 5% signifance level depicted significant decreasing rates in SWAT predicted recharge compared to Modified Pitman predicted recharge. The two models did also predict recharge and other water balance components with differing peaks, lows and timings. Modified Pitman predicted mean annual recharge of 63.3-92.8 mm where as SWAT predicted mean annual recharge of 14.4-182.8 mm. In reference to earlier findings within TMG areas, estimated percentages of groundwater recharge were close to those simulated by both Pitman and SWAT models. Modified Pitman and SWAT models appear to both be reasonable tools to estimate recharge in TMG setting, producing relatively similar results to one another and to other regional estimates. Since the current study estimated low recharge rates (Modified Pitman; ~9.3-13.6% MAP), (SWAT; ~2.1-26.7% MAP) which are close to those predicted in other TMG areas, the study recommends exercising caution when developing a water supply strategy in the current study area. The recharge rates within the pertinent recharging areas should be considered when designing and sitting abstraction points such as boreholes and a sustainable abstraction rate in any one borehole for improved sustainable management of groundwater resources. , Thesis (MSc) -- Faculty of Science, Institute for Water Research, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Wasswa, Peter
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435400 , vital:73154
- Description: The world's most plentiful source of freshwater is thought to be groundwater. During extended dry times, it serves as an essential storage component and guards against environmental catastrophes. Despite its critical functions in the aforementioned scenarios, it is often insufficiently understood and inadequately managed. As a result, it calls for the adoption of integrated methods to comprehend the dynamics of groundwater recharge. Thus, the current study evaluated the applicability and suitability of the Modified Pitman and SWAT models for groundwater recharge estimation in the upstream area of UAB for the period that spanned from 1993 to 2021. It was achieved by using a qualitative conceptual-perceptual model to inform the two hydrological models, Modified Pitman, and SWAT. The developed qualitative conceptual-perceptual model depicted the dominancy of irregularly folded and fractured TMG rock outcrops coupled with fault systems in the upstream area. In the downward section, TMG is overlaid by the aquiclude from the Uitenhage Group which is responsible for the artesian conditions. Groundwater potential zones were classified as Poor, Fair, Good, and Excellent, with 65.4% and 8.7% of the upstream area attributed to Good and Excellent zones respectively. Both Modified Pitman and SWAT predicted decreasing rates of groundwater recharge in the upstream area over time, though Mann-Kendal trend tests done at 5% signifance level depicted significant decreasing rates in SWAT predicted recharge compared to Modified Pitman predicted recharge. The two models did also predict recharge and other water balance components with differing peaks, lows and timings. Modified Pitman predicted mean annual recharge of 63.3-92.8 mm where as SWAT predicted mean annual recharge of 14.4-182.8 mm. In reference to earlier findings within TMG areas, estimated percentages of groundwater recharge were close to those simulated by both Pitman and SWAT models. Modified Pitman and SWAT models appear to both be reasonable tools to estimate recharge in TMG setting, producing relatively similar results to one another and to other regional estimates. Since the current study estimated low recharge rates (Modified Pitman; ~9.3-13.6% MAP), (SWAT; ~2.1-26.7% MAP) which are close to those predicted in other TMG areas, the study recommends exercising caution when developing a water supply strategy in the current study area. The recharge rates within the pertinent recharging areas should be considered when designing and sitting abstraction points such as boreholes and a sustainable abstraction rate in any one borehole for improved sustainable management of groundwater resources. , Thesis (MSc) -- Faculty of Science, Institute for Water Research, 2024
- Full Text:
- Date Issued: 2024-04-04
Aptamer-based biosensor for prostate specific antigen detection using cobalt phthalocyanine-exfoliated graphite composites
- Authors: Benise, Emihle
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434850 , vital:73110
- Description: The work focuses on the development of biosensors and their use for the detection of prostate specific antigen (PSA). Four cobalt phthalocyanines (CoPcs) complexes: (1) cobalt tetra pyridyloxy phthalocyanine, (2) cobalt tetra acetamidophenoxy phthalocyanine, (3) cobalt tris(acetamidophenoxy) mono benzoic acid phthalocyanine, and (4) cobalt tris(acetamidophenoxy) mono propionic acid phthalocyanine, an exfoliated graphite (EG), and aptamer are used to make probes for PSA detection. Each complex is π-π stacked onto the EG to form EG-CoPc(π-π) hybrid which was used to modify a glassy carbon electrode (GCE). EG and CoPc were also used to modify the GCE sequential (seq) with CoPc on top to give GCE-EG-CoPc(seq). For the detection PSA, PSA specific aptamer was either sequential added or covalently linked to complexes 3 and 4 on the modified electrodes and was only sequentially added onto complexes 1 and 2 modified electrodes. Electrochemical impedance spectroscopy (EIS) and differential pulse voltammetry (DPV) were the techniques used for the detection of PSA. The electrodes were found to be selective in bovine serum albumin, glucose and cysteine and stable when 50 DPV scans were run. Electrodes gave good % recovery when human serum was spiked with different PSA concentrations. , Thesis (MSc) -- Faculty of Science, Chemistry, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Benise, Emihle
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434850 , vital:73110
- Description: The work focuses on the development of biosensors and their use for the detection of prostate specific antigen (PSA). Four cobalt phthalocyanines (CoPcs) complexes: (1) cobalt tetra pyridyloxy phthalocyanine, (2) cobalt tetra acetamidophenoxy phthalocyanine, (3) cobalt tris(acetamidophenoxy) mono benzoic acid phthalocyanine, and (4) cobalt tris(acetamidophenoxy) mono propionic acid phthalocyanine, an exfoliated graphite (EG), and aptamer are used to make probes for PSA detection. Each complex is π-π stacked onto the EG to form EG-CoPc(π-π) hybrid which was used to modify a glassy carbon electrode (GCE). EG and CoPc were also used to modify the GCE sequential (seq) with CoPc on top to give GCE-EG-CoPc(seq). For the detection PSA, PSA specific aptamer was either sequential added or covalently linked to complexes 3 and 4 on the modified electrodes and was only sequentially added onto complexes 1 and 2 modified electrodes. Electrochemical impedance spectroscopy (EIS) and differential pulse voltammetry (DPV) were the techniques used for the detection of PSA. The electrodes were found to be selective in bovine serum albumin, glucose and cysteine and stable when 50 DPV scans were run. Electrodes gave good % recovery when human serum was spiked with different PSA concentrations. , Thesis (MSc) -- Faculty of Science, Chemistry, 2024
- Full Text:
- Date Issued: 2024-04-04
Attitudes and achievement in statistics: a meta-analytic and functional near-infrared spectroscopy approach
- Authors: Wagenaar, Emma Kate
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435490 , vital:73162
- Description: Statistics anxiety describes the extensive worry and apprehension that students may experience when faced with statistics content as part of their university curriculums. Student’s perfunctory disposition towards statistics has been indicated to negatively affect performance outcomes in statistics courses. Two meta-analyses were conducted to investigate the relationship between statistics anxiety and achievement in statistics. The first meta-analysis was inclusive of 22 studies investigating the relationship attitudes towards statistics and achievement, whilst the second meta-analysis focused on the relationship, primary amongst Psychology students. Student’s attitudes towards statistics were measured using the Survey of Attitudes Towards Statistics (SATS), whilst achievement in statistics courses was quantified using different outcome measures. Finding from the meta-analysis were supplemented by cortical mapping of the neural correlates of statistical reasoning using functional near-infrared spectroscopy (fNIRS). Results from the meta-analysis indicated a small significant relationship between university students’ Affect, r = 0.28, Value, r = 0.22 and Difficulty, r = 0.18, and subsequent achievement in statistics courses. A medium significant relationship between Cognitive Competence, r = 0.31, and achievement was also noted. Findings from the second meta-analysis, indicated a medium, significant relationship between Affect, r = 0.32, and Cognitive Competence, r = 0.35, and achievement. Moreover, a small significant relationship was found between Value, r = 0.24, and Difficulty, r = 0.23, in relation to achievement in statistics courses. Case study analysis of the neural correlates of statistics reasoning revealed varied signal quality findings of cortical mapping of the neural correlates of statistics in the dorsolateral prefrontal cortex (DLPFC). Moreover, seed-based correlation analysis indicated cortical activation of the dorsolateral prefrontal cortex paired with diverse prefrontal regions. Recommendations from the study include improvements to the fNIRS research design and the inclusion of larger samples to investigate the cortical mapping of the DLPFC in relation to statistics reasoning and statistics anxiety. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Wagenaar, Emma Kate
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435490 , vital:73162
- Description: Statistics anxiety describes the extensive worry and apprehension that students may experience when faced with statistics content as part of their university curriculums. Student’s perfunctory disposition towards statistics has been indicated to negatively affect performance outcomes in statistics courses. Two meta-analyses were conducted to investigate the relationship between statistics anxiety and achievement in statistics. The first meta-analysis was inclusive of 22 studies investigating the relationship attitudes towards statistics and achievement, whilst the second meta-analysis focused on the relationship, primary amongst Psychology students. Student’s attitudes towards statistics were measured using the Survey of Attitudes Towards Statistics (SATS), whilst achievement in statistics courses was quantified using different outcome measures. Finding from the meta-analysis were supplemented by cortical mapping of the neural correlates of statistical reasoning using functional near-infrared spectroscopy (fNIRS). Results from the meta-analysis indicated a small significant relationship between university students’ Affect, r = 0.28, Value, r = 0.22 and Difficulty, r = 0.18, and subsequent achievement in statistics courses. A medium significant relationship between Cognitive Competence, r = 0.31, and achievement was also noted. Findings from the second meta-analysis, indicated a medium, significant relationship between Affect, r = 0.32, and Cognitive Competence, r = 0.35, and achievement. Moreover, a small significant relationship was found between Value, r = 0.24, and Difficulty, r = 0.23, in relation to achievement in statistics courses. Case study analysis of the neural correlates of statistics reasoning revealed varied signal quality findings of cortical mapping of the neural correlates of statistics in the dorsolateral prefrontal cortex (DLPFC). Moreover, seed-based correlation analysis indicated cortical activation of the dorsolateral prefrontal cortex paired with diverse prefrontal regions. Recommendations from the study include improvements to the fNIRS research design and the inclusion of larger samples to investigate the cortical mapping of the DLPFC in relation to statistics reasoning and statistics anxiety. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-04-04
Case in modern standard Arabic
- Ghammaz, Hamzah Saleh Theyab
- Authors: Ghammaz, Hamzah Saleh Theyab
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435593 , vital:73171 , DOI 10.21504/10962/435593
- Description: This thesis provides a novel account of case checking in Modern Standard Arabic (henceforth MSA). It argues against the concept that nominative case in topic and comment structures is default. Default or inherent case is not related to case filter, nor is it assigned by any syntactic method. Some linguists claim that the default case in Arabic language is employed only when no case assigner is available. I argue, in light of the minimalist program (henceforth MP), that default (inherent) case is always a problem for syntactic theory and that the nominative case which the topic and comment sentences bear is valued by a functional head. The topic and comment constructions contain a predicational head (Pred)- a functional head, that is equivalent to vP which occurs in verbal constructions. The head of PredP is accountable for nominative case value on the topic and comment structures. This thesis also provides a novel paradigm regarding the clitics that appear at the end of verbs in MSA. This paradigm proves that these clitics are not agreement, tense, nor mood markers but rather Verbal Case markers and it provides a minimalist program account to explain case checking on verbs in MSA. Regarding sentence initial DP, and contra to the proposal that in SVO sentence initial DP is a subject, I have scrutinised the nature of this DP and provided enough evidence that it is a topic. Additionally, I have investigated the relationship between agreement asymmetry and the position of the subject in MSA from the minimalist feature inheritance account viewpoint. Mainly, I reviewed null pro hypothesis which proved to be redundant to account for the derivation of VSO or SVO word orders. I have also proved what were considered agreement markers are not agreement markers but resumptive pronouns. Finally, I proved that there is not agreement asymmetry in MSA. Agreement pattern in MSA results from the agree operation and it is achieved under Probe-Goal alignment; regardless of whether the Goal is raised up to Spec-TP or remains in situ (Spec-VP), the agreement is not supposed to change. This conclusion is in harmony with the principles of MP Agree Theory. , Thesis (PhD) -- Humanities, Linguistics and Applied Language Studies, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Ghammaz, Hamzah Saleh Theyab
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435593 , vital:73171 , DOI 10.21504/10962/435593
- Description: This thesis provides a novel account of case checking in Modern Standard Arabic (henceforth MSA). It argues against the concept that nominative case in topic and comment structures is default. Default or inherent case is not related to case filter, nor is it assigned by any syntactic method. Some linguists claim that the default case in Arabic language is employed only when no case assigner is available. I argue, in light of the minimalist program (henceforth MP), that default (inherent) case is always a problem for syntactic theory and that the nominative case which the topic and comment sentences bear is valued by a functional head. The topic and comment constructions contain a predicational head (Pred)- a functional head, that is equivalent to vP which occurs in verbal constructions. The head of PredP is accountable for nominative case value on the topic and comment structures. This thesis also provides a novel paradigm regarding the clitics that appear at the end of verbs in MSA. This paradigm proves that these clitics are not agreement, tense, nor mood markers but rather Verbal Case markers and it provides a minimalist program account to explain case checking on verbs in MSA. Regarding sentence initial DP, and contra to the proposal that in SVO sentence initial DP is a subject, I have scrutinised the nature of this DP and provided enough evidence that it is a topic. Additionally, I have investigated the relationship between agreement asymmetry and the position of the subject in MSA from the minimalist feature inheritance account viewpoint. Mainly, I reviewed null pro hypothesis which proved to be redundant to account for the derivation of VSO or SVO word orders. I have also proved what were considered agreement markers are not agreement markers but resumptive pronouns. Finally, I proved that there is not agreement asymmetry in MSA. Agreement pattern in MSA results from the agree operation and it is achieved under Probe-Goal alignment; regardless of whether the Goal is raised up to Spec-TP or remains in situ (Spec-VP), the agreement is not supposed to change. This conclusion is in harmony with the principles of MP Agree Theory. , Thesis (PhD) -- Humanities, Linguistics and Applied Language Studies, 2024
- Full Text:
- Date Issued: 2024-04-04
Computational design for genome reduction of Lactococcus lactis towards microbial chassis development
- Authors: Hamese, Saltiel
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435321 , vital:73147
- Description: Access restricted. Expected release date 2026. , Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Hamese, Saltiel
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435321 , vital:73147
- Description: Access restricted. Expected release date 2026. , Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2024
- Full Text:
- Date Issued: 2024-04-04
Developing a community of practice to promote the use of biological control in the integrated management of Prosopis in South Africa
- Authors: Van Staden, Gretha
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434998 , vital:73122
- Description: Prosopis spp. are non-native species present in the arid parts of southern Africa. These trees originated in the Americas and were first introduced as a source of fodder, shade, and wood, but have become invasive, negatively impacting local biodiversity, and disrupting the delivery of ecosystem services. Some species of Prosopis hybridise freely, complicating identification and subsequent control. The control of Prosopis in the Northern Cape Province of South Africa is still contentious, because of the perceived benefits to some landowners. The effectiveness of biological control agents to control the spread of Prosopis has been quantified, more damaging agents have been considered in recent years because of the continued increase in Prosopis density. Research into the establishment of a Community of Practice (CoP) to address the differences in perceptions regarding the control of Prosopis in the Northern Cape Province is considered an appropriate starting point to conceptualise the challenges to the successful integrated management of Prosopis. As farmers are the main stakeholders involved with Prosopis control, understanding the role of farmers and the functioning of farming enterprises in the Northern Cape is imperative for the development of both a CoP as well as the appropriate management of Prosopis. To foster engagement with as many stakeholders as possible, workshops dealing with biological control as part on an integrated approach to the control of Prosopis were held in towns in the Northern Cape Province: Groblershoop, Brandvlei, Kenhardt, Upington, Prieska and Williston. Some of the main concerns of the landusers include the host specificity of the released biocontrol agents, as well as increased transparency and communication. This is especially in regards to the research on present and future biological control agents that will possibly improve the perceptions of stakeholders. The mechanical harvesting and use of biomass as a control method was supported, especially where farmers were removing Prosopis from their properties, leaving large amounts of biomass in the veld. Continued research into Prosopis in the Northern Cape needs to consider the possibility of secondary invasions, especially in areas where native bush encroachment is already a concern. The impact of clearing in terms of natural grazing and animal improvement needs to be quantified, to conceptualise the importance of maintaining better veld quality versus using Prosopis for fodder. Biological control targeting not only the reproductive output of the trees, but also the standing biomass has support from the majority of the land users in the Northern Cape Province following these workshops and this study shows the importance of a socio-ecological approach to the control of landscape scale invasion. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Van Staden, Gretha
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434998 , vital:73122
- Description: Prosopis spp. are non-native species present in the arid parts of southern Africa. These trees originated in the Americas and were first introduced as a source of fodder, shade, and wood, but have become invasive, negatively impacting local biodiversity, and disrupting the delivery of ecosystem services. Some species of Prosopis hybridise freely, complicating identification and subsequent control. The control of Prosopis in the Northern Cape Province of South Africa is still contentious, because of the perceived benefits to some landowners. The effectiveness of biological control agents to control the spread of Prosopis has been quantified, more damaging agents have been considered in recent years because of the continued increase in Prosopis density. Research into the establishment of a Community of Practice (CoP) to address the differences in perceptions regarding the control of Prosopis in the Northern Cape Province is considered an appropriate starting point to conceptualise the challenges to the successful integrated management of Prosopis. As farmers are the main stakeholders involved with Prosopis control, understanding the role of farmers and the functioning of farming enterprises in the Northern Cape is imperative for the development of both a CoP as well as the appropriate management of Prosopis. To foster engagement with as many stakeholders as possible, workshops dealing with biological control as part on an integrated approach to the control of Prosopis were held in towns in the Northern Cape Province: Groblershoop, Brandvlei, Kenhardt, Upington, Prieska and Williston. Some of the main concerns of the landusers include the host specificity of the released biocontrol agents, as well as increased transparency and communication. This is especially in regards to the research on present and future biological control agents that will possibly improve the perceptions of stakeholders. The mechanical harvesting and use of biomass as a control method was supported, especially where farmers were removing Prosopis from their properties, leaving large amounts of biomass in the veld. Continued research into Prosopis in the Northern Cape needs to consider the possibility of secondary invasions, especially in areas where native bush encroachment is already a concern. The impact of clearing in terms of natural grazing and animal improvement needs to be quantified, to conceptualise the importance of maintaining better veld quality versus using Prosopis for fodder. Biological control targeting not only the reproductive output of the trees, but also the standing biomass has support from the majority of the land users in the Northern Cape Province following these workshops and this study shows the importance of a socio-ecological approach to the control of landscape scale invasion. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Date Issued: 2024-04-04
Educators’ experiences of psychosocial support workshops during COVID-19 in Eastern Cape, South Africa
- Authors: Mabasa, Rendani Mirriam
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435457 , vital:73159
- Description: There is growing awareness of the value and central role of immediate and long-term mental health and psychosocial support (MHPSS) interventions, especially during times of crisis such as Covid-19. The World Health Organization has identified the education sector as a crucial intervention site for public mental health promotion. In collaboration with members of the Makhanda education community, the Rhodes University Community Engagement office identified psychosocial support for educators and educational practitioners as a key societal and educational challenge. Focusing specifically on the experiences of educators, this study sought to solicit their experiences of MHPSS workshops in a rural city of the Eastern Cape province of South Africa. Focus groups with educators and educational practitioners in non-government organisations, care centres and other educational settings who participated in the psychosocial support workshops were conducted. Data was analysed using community psychology’s social action framework. Four broad themes emerged from the data: the responsibilisation of educators during and post-Covid-19, educators’ resilience and support for each other, educators’ mental health promotion through psychosocial support workshops, and top-down intervention strategies that fall short in addressing educators’ and learners’ needs. This study demonstrates the value of university-community partnerships in education settings which are key sites for public mental health promotion. In this study, I advocate psychosocial support as a standard practice available for educational practitioners and show how professional training programmes in higher education can be responsive to societal challenges via collaborative approaches. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Mabasa, Rendani Mirriam
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435457 , vital:73159
- Description: There is growing awareness of the value and central role of immediate and long-term mental health and psychosocial support (MHPSS) interventions, especially during times of crisis such as Covid-19. The World Health Organization has identified the education sector as a crucial intervention site for public mental health promotion. In collaboration with members of the Makhanda education community, the Rhodes University Community Engagement office identified psychosocial support for educators and educational practitioners as a key societal and educational challenge. Focusing specifically on the experiences of educators, this study sought to solicit their experiences of MHPSS workshops in a rural city of the Eastern Cape province of South Africa. Focus groups with educators and educational practitioners in non-government organisations, care centres and other educational settings who participated in the psychosocial support workshops were conducted. Data was analysed using community psychology’s social action framework. Four broad themes emerged from the data: the responsibilisation of educators during and post-Covid-19, educators’ resilience and support for each other, educators’ mental health promotion through psychosocial support workshops, and top-down intervention strategies that fall short in addressing educators’ and learners’ needs. This study demonstrates the value of university-community partnerships in education settings which are key sites for public mental health promotion. In this study, I advocate psychosocial support as a standard practice available for educational practitioners and show how professional training programmes in higher education can be responsive to societal challenges via collaborative approaches. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-04-04
Elucidation of the roles of the carbonic anhydrase enzymes, CanA & CanB, in the physiology of Mycobacterium smegmatis
- Authors: Jackson, Gabriella Teresa
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435299 , vital:73145
- Description: The bacterial pathogen Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis (TB) and one of the leading infectious causes of death globally. The success of Mtb as a pathogen depends on its ability to detect and respond to a variety of physical and chemical stresses it encounters during infection of its human host. These environmental stresses include shifts in temperature, oxygen concentration, osmolarity and nutrient availability. Mtb is, in addition, exposed to changes in pH and CO2 concentration in the intracellular and extracellular environments it inhabits, which the bacterium has to adapt to in order to ensure its growth, survival and/or persistence during infection. Carbonic anhydrases (CAs) are a widely distributed family of enzymes that catalyse the reversible hydration of carbon dioxide (CO2) to bicarbonate (HCO3−) in the reaction: CO2 + H2O ⇄ HCO3− + H+. In microbes, CA activity is important for the activity of enzymes involved in carbon fixation as well as for maintaining pH homeostasis. Mtb is known to express three CAs, encoded by the Rv3588c, Rv1284 and Rv3273 genes (canA, canB and canC, respectively). The role(s) of these CA enzymes in the physiology of Mtb and other mycobacterial species, such as Mycobacterium smegmatis (Msm), has not been elucidated to date. To gain insights into the function of the CanA and CanB enzymes in mycobacterial species, we generated both canA and canB knockdown (KD) and knockout (KO) mutants in the fast-growing mycobacterial species, Msm, and analysed their growth phenotypes under several growth conditions where CA activity is known to be required. Notably, Msm lacks the CanC homologue, which makes it an ideal surrogate to focus on CanA and CanB. The Msm canA KD mutant was found to display a growth defect following anhydrotetracycline (ATc)-mediated gene silencing at atmospheric (low) CO2 concentrations [~0.035% CO2 (v/v)]. The growth defect could be rescued by incubating cells at physiological (high) CO2 concentrations [~5% CO2 (v/v)] or by supplementing the growth media with either HCO3− or the metabolic end-products of certain HCO3−-dependent-carboxylase enzymes at low CO2 concentrations. The ability of these compounds to rescue the growth of the canA KD mutants was, however, dependent on the extent of ATc-mediated gene silencing, suggesting that the canA gene is required for Msm growth at both low and high CO2 concentrations. This was confirmed by our findings that canA could only be genetically inactivated when a second copy of the gene was provided on the chromosome in trans, regardless of the CO2 concentration used. In contrast to our observations for canA, no differences in the growth phenotypes of the Msm wild type (WT) and canB KD or knockout (KO) mutant strains were observed following silencing or inactivation of the canB gene at either low or high CO2 concentrations or different pH values. These observations suggest that, in contrast to canA, the canB gene is dispensable for the growth of Msm under standard laboratory growth conditions. The canB KO mutant strain, nevertheless, displayed a slight decrease in its ability to form biofilms when compared to the WT strain, which could be restored by genetic complementation. CanB activity may, therefore, be required to promote bacterial growth and/or survival under biofilm conditions where CO2 diffusion into cells is limited, a phenomenon that has recently been observed in other microbes. Further studies are required to confirm the role of CanB in biofilm formation and to determine how the different CA enzymes cooperate to promote the growth and survival of mycobacterial species in the various environments they are known to inhabit. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2024
- Full Text:
- Date Issued: 2024-04-04
- Authors: Jackson, Gabriella Teresa
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435299 , vital:73145
- Description: The bacterial pathogen Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis (TB) and one of the leading infectious causes of death globally. The success of Mtb as a pathogen depends on its ability to detect and respond to a variety of physical and chemical stresses it encounters during infection of its human host. These environmental stresses include shifts in temperature, oxygen concentration, osmolarity and nutrient availability. Mtb is, in addition, exposed to changes in pH and CO2 concentration in the intracellular and extracellular environments it inhabits, which the bacterium has to adapt to in order to ensure its growth, survival and/or persistence during infection. Carbonic anhydrases (CAs) are a widely distributed family of enzymes that catalyse the reversible hydration of carbon dioxide (CO2) to bicarbonate (HCO3−) in the reaction: CO2 + H2O ⇄ HCO3− + H+. In microbes, CA activity is important for the activity of enzymes involved in carbon fixation as well as for maintaining pH homeostasis. Mtb is known to express three CAs, encoded by the Rv3588c, Rv1284 and Rv3273 genes (canA, canB and canC, respectively). The role(s) of these CA enzymes in the physiology of Mtb and other mycobacterial species, such as Mycobacterium smegmatis (Msm), has not been elucidated to date. To gain insights into the function of the CanA and CanB enzymes in mycobacterial species, we generated both canA and canB knockdown (KD) and knockout (KO) mutants in the fast-growing mycobacterial species, Msm, and analysed their growth phenotypes under several growth conditions where CA activity is known to be required. Notably, Msm lacks the CanC homologue, which makes it an ideal surrogate to focus on CanA and CanB. The Msm canA KD mutant was found to display a growth defect following anhydrotetracycline (ATc)-mediated gene silencing at atmospheric (low) CO2 concentrations [~0.035% CO2 (v/v)]. The growth defect could be rescued by incubating cells at physiological (high) CO2 concentrations [~5% CO2 (v/v)] or by supplementing the growth media with either HCO3− or the metabolic end-products of certain HCO3−-dependent-carboxylase enzymes at low CO2 concentrations. The ability of these compounds to rescue the growth of the canA KD mutants was, however, dependent on the extent of ATc-mediated gene silencing, suggesting that the canA gene is required for Msm growth at both low and high CO2 concentrations. This was confirmed by our findings that canA could only be genetically inactivated when a second copy of the gene was provided on the chromosome in trans, regardless of the CO2 concentration used. In contrast to our observations for canA, no differences in the growth phenotypes of the Msm wild type (WT) and canB KD or knockout (KO) mutant strains were observed following silencing or inactivation of the canB gene at either low or high CO2 concentrations or different pH values. These observations suggest that, in contrast to canA, the canB gene is dispensable for the growth of Msm under standard laboratory growth conditions. The canB KO mutant strain, nevertheless, displayed a slight decrease in its ability to form biofilms when compared to the WT strain, which could be restored by genetic complementation. CanB activity may, therefore, be required to promote bacterial growth and/or survival under biofilm conditions where CO2 diffusion into cells is limited, a phenomenon that has recently been observed in other microbes. Further studies are required to confirm the role of CanB in biofilm formation and to determine how the different CA enzymes cooperate to promote the growth and survival of mycobacterial species in the various environments they are known to inhabit. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2024
- Full Text:
- Date Issued: 2024-04-04