Thermal tolerance and the potential effects of climate change on coastal intertidal and estuarine organisms in the Kariega Estuary and adjacent intertitdal coastline, Eastern Cape, South Africa
- Authors: Van der Walt, Kerry-Ann
- Date: 2020
- Subjects: Ectotherms -- Climatic factors , Ectotherms -- Effect of temperature on , Fishes -- Climatic factors , Fishes -- Effect of temperature on , Climatic changes -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/148459 , vital:38741
- Description: Temperature changes due to the effects of climate change are evident on all continents and oceans. As a result, there is a growing concern over how marine ectotherms will respond to extreme or fluctuating environmental temperatures. Temperature changes have strong direct and indirect effects on individual, population, and ecosystem functioning traits. A multi-scale approach determining the thermal tolerance and performance of several marine ectotherms belonging to different coastal habitats is rarely considered in thermal physiology studies but is effective for an integrated ecosystem assessment. As such, for this thesis, I aimed to quantify and compare the thermal tolerance and performance of a range of coastal marine ectotherms (fish and macro-invertebrates) with different biogeographical distributions from estuarine, subtidal and rocky intertidal habitats to available and projected in situ temperature data. This was also undertaken to gauge the local vulnerability of each species across summer and winter in a warm-temperate region of South Africa. This was done using a multi-method physiological approach, which included the dynamic method (CTmax and CTmin), static respirometry and maximum heart rate fHmax). Results of the dynamic method on several fish and macro-invertebrate species indicated that there are differences in thermal tolerance according to taxonomy, biogeography and habitat for both summer and winter. Macro-invertebrate species generally had higher CTmax endpoints, lower CTmin endpoints, higher upper and lower breadths in tolerance, higher upper and lower thermal safety margins and higher thermal scopes than the fish species. This could be a result of the macro-invertebrate species studied being less mobile compared with fish species (which are able to move to more favourable conditions) as well as having broader geographical distributions. In addition, macro-invertebrates from the intertidal rock pool habitat (Palaemon peringueyi; Pernaperna) were more tolerant of high and low temperatures compared with the macro-invertebrates from the estuarine habitat (Clibanarius virescens; Parasesarma catenatum; Upogebia africana). Overall, macro-invertebrates, with the exception of Parechinus angulosus, investigated in this study indicated that current temperatures and projected climate change scenarios across seasons would not have a significant impact on them and that they are highly adaptable to changing temperature regimes. This sign of high tolerance was further supported by the heart rates of P. perna and P. catenatum under an acute increase in temperature (1.0 °C.h-1) which showed individuals of each species physiologically depressing their metabolism until a final Arrhenius breakpoint temperature was reached (TAB). Among the fish species investigated in this study, tropical species (Chaetodon marleyi; Kuhlia mugil) had the highest CTmax and CTmin endpoints when compared with the temperate (Diplodus capensis; Sarpa salpa), warm-water endemic (Chelon dumerili; Rhabdosargus holubi) and cool-water endemic (Chelon richardsonii) fishes. This suggests that due to their lower breadths in tolerance and thermal safety margins being small, tropical species may be less tolerant of cold temperatures and thermal variability, especially in the form of summer upwelling events which are expected to increase in intensity and frequency in this region as a result of anthropogenic climate change effects. On the other hand, however, if a temperature increase of 2.0 - 4.0 °C takes place at the end of the century as predicted by the Intergovernmental Panel on Climate Change (IPCC), it is likely that tropical species such as C. marleyi will become more common. Temperate species such as D. capensis and S. salpa were able to tolerate a wide range of temperatures (wide thermal scope) compared with the other fish species. These findings may suggest that D. capensis and S. salpa are thermally resilient and may be the least vulnerable to climate change effects and temperature variability. When evaluating the different life stages of D. capensis, however, using the dynamic method (juveniles and adults), static respirometry (juveniles) and maximum heart rate (adults), results suggested that juveniles of this temperate species will be more resilient to increases in ocean temperatures compared with the adults because they have a higher thermal tolerance (CTmax/TCRIT) and a greater metabolic scope (TOPT) at higher temperatures. For both juveniles and adults, temperatures beyond 28.0 °C (upper Tpej; Tarr) will have a significant impact on their physiology. Using a multi-scale and multi-method approach thus helped to identify which species or community may be vulnerable to the effects of climate change within shallow coastal environments in this warm-temperate climate change hotspot. Adopting this type of approach will assist policy makers in developing comprehensive climate change management frameworks for coastal ecosystems globally and around South Africa.
- Full Text:
- Date Issued: 2020
- Authors: Van der Walt, Kerry-Ann
- Date: 2020
- Subjects: Ectotherms -- Climatic factors , Ectotherms -- Effect of temperature on , Fishes -- Climatic factors , Fishes -- Effect of temperature on , Climatic changes -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/148459 , vital:38741
- Description: Temperature changes due to the effects of climate change are evident on all continents and oceans. As a result, there is a growing concern over how marine ectotherms will respond to extreme or fluctuating environmental temperatures. Temperature changes have strong direct and indirect effects on individual, population, and ecosystem functioning traits. A multi-scale approach determining the thermal tolerance and performance of several marine ectotherms belonging to different coastal habitats is rarely considered in thermal physiology studies but is effective for an integrated ecosystem assessment. As such, for this thesis, I aimed to quantify and compare the thermal tolerance and performance of a range of coastal marine ectotherms (fish and macro-invertebrates) with different biogeographical distributions from estuarine, subtidal and rocky intertidal habitats to available and projected in situ temperature data. This was also undertaken to gauge the local vulnerability of each species across summer and winter in a warm-temperate region of South Africa. This was done using a multi-method physiological approach, which included the dynamic method (CTmax and CTmin), static respirometry and maximum heart rate fHmax). Results of the dynamic method on several fish and macro-invertebrate species indicated that there are differences in thermal tolerance according to taxonomy, biogeography and habitat for both summer and winter. Macro-invertebrate species generally had higher CTmax endpoints, lower CTmin endpoints, higher upper and lower breadths in tolerance, higher upper and lower thermal safety margins and higher thermal scopes than the fish species. This could be a result of the macro-invertebrate species studied being less mobile compared with fish species (which are able to move to more favourable conditions) as well as having broader geographical distributions. In addition, macro-invertebrates from the intertidal rock pool habitat (Palaemon peringueyi; Pernaperna) were more tolerant of high and low temperatures compared with the macro-invertebrates from the estuarine habitat (Clibanarius virescens; Parasesarma catenatum; Upogebia africana). Overall, macro-invertebrates, with the exception of Parechinus angulosus, investigated in this study indicated that current temperatures and projected climate change scenarios across seasons would not have a significant impact on them and that they are highly adaptable to changing temperature regimes. This sign of high tolerance was further supported by the heart rates of P. perna and P. catenatum under an acute increase in temperature (1.0 °C.h-1) which showed individuals of each species physiologically depressing their metabolism until a final Arrhenius breakpoint temperature was reached (TAB). Among the fish species investigated in this study, tropical species (Chaetodon marleyi; Kuhlia mugil) had the highest CTmax and CTmin endpoints when compared with the temperate (Diplodus capensis; Sarpa salpa), warm-water endemic (Chelon dumerili; Rhabdosargus holubi) and cool-water endemic (Chelon richardsonii) fishes. This suggests that due to their lower breadths in tolerance and thermal safety margins being small, tropical species may be less tolerant of cold temperatures and thermal variability, especially in the form of summer upwelling events which are expected to increase in intensity and frequency in this region as a result of anthropogenic climate change effects. On the other hand, however, if a temperature increase of 2.0 - 4.0 °C takes place at the end of the century as predicted by the Intergovernmental Panel on Climate Change (IPCC), it is likely that tropical species such as C. marleyi will become more common. Temperate species such as D. capensis and S. salpa were able to tolerate a wide range of temperatures (wide thermal scope) compared with the other fish species. These findings may suggest that D. capensis and S. salpa are thermally resilient and may be the least vulnerable to climate change effects and temperature variability. When evaluating the different life stages of D. capensis, however, using the dynamic method (juveniles and adults), static respirometry (juveniles) and maximum heart rate (adults), results suggested that juveniles of this temperate species will be more resilient to increases in ocean temperatures compared with the adults because they have a higher thermal tolerance (CTmax/TCRIT) and a greater metabolic scope (TOPT) at higher temperatures. For both juveniles and adults, temperatures beyond 28.0 °C (upper Tpej; Tarr) will have a significant impact on their physiology. Using a multi-scale and multi-method approach thus helped to identify which species or community may be vulnerable to the effects of climate change within shallow coastal environments in this warm-temperate climate change hotspot. Adopting this type of approach will assist policy makers in developing comprehensive climate change management frameworks for coastal ecosystems globally and around South Africa.
- Full Text:
- Date Issued: 2020
Towards understanding how exploitation influences the wild energetic response of marine fish to temperature variability
- Authors: Skeeles, Michael Richard
- Date: 2020
- Subjects: Chrysoblepus laticeps -- Climatic factors , Sparidae -- Genetics , Sparidae -- South Africa -- Climatic factors
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/145133 , vital:38411
- Description: Exploitation of fish populations can exacerbate the effects of climate change, yet our understanding of their synergistic effects remains limited. As fish are increasingly exposed to temperatures on the edges of their optimal thermal performance window, their physiological response is expected to shape their future performance. It is therefore concerning that exploitation can select for specific physiological phenotypes, as this may affect fished populations’ physiological response to temperature change. A recent laboratory study revealed fewer high-performance metabolic-scope phenotypes in an exploited population of the marine Sparid Chrysoblepus laticeps across a range of experimental temperatures in comparison to an unexploited population. This suggested that individuals in exploited populations may have less available energy for aerobic performance at thermal extremes, which may reduce the resilience of the population to changes in temperature. However, since laboratory experiments exclude numerous other variables that fish encounter in the wild, it was necessary to test this finding in a natural setting. This thesis aimed to further develop the laboratory study by assessing whether exploitation effects the wild energetic response of C. laticeps to thermal variability. To achieve this, the field metabolic rate of C. laticeps, a resident and endemic South African fish, from a near-pristine population (Tsitsikamma National Park) and a heavily exploited population (Port Elizabeth) was compared using acoustic accelerometry. A laboratory-based study using a swim-tunnel respirometer and accelerometer transmitters was conducted to develop a model to predict metabolic rate from acceleration data at temperatures from 10 to 22⁰C. Acceleration, temperature, mass and population (exploited/unexploited) were found to be the best predictors of the metabolic rate of C. laticeps and were incorporated into the model to estimate the field metabolic rate of fish tagged with acoustic accelerometers in the wild. To examine the combined effects of temperature and exploitation on the field metabolic rate of C. laticeps in their natural state, two fine-scale telemetry arrays with temperature loggers were used to assess the acceleration of the fish across different temperatures in the wild for three months during a period of high thermal variability. Ten fish from the exploited and unexploited populations were caught, surgically implanted with accelerometer transmitters and released back into the wild. Close to 500 000 and 400 000 acceleration estimates were recorded from wild exploited and unexploited fish, respectively. The field metabolic rate of both populations was estimated by combining the field acceleration and temperature data with the laboratory calibration model. The field metabolic rate of C. laticeps from the exploited population was constrained near cold and warm extremes compared to no constraints observed in the unexploited population. This was attributed to reduced inter-individual variability in the field metabolic rate-temperature relationship within the exploited population. There appeared to be a greater proportion of individuals that maintained a high field metabolic rate at extreme temperatures in the unexploited population. In contrast, all but one fish from the exploited population did not maintain a high field metabolic rate at extreme temperatures. These findings aligned with the laboratory-based metabolic-scope study on both populations of C. laticeps and demonstrate that passive-fishing may be removing thermally tolerant individuals and rendering exploited populations less resilient to thermal change. These findings are discussed in the context of fisheries management and particularly on the role that marine protected areas could play in maintaining physiological diversity, and therefore the resilience of fish in the Anthropocene. This study highlights the importance of applied conservation physiology in understanding the consequences of fisheries-induced evolution in an increasingly variable climate.
- Full Text:
- Date Issued: 2020
- Authors: Skeeles, Michael Richard
- Date: 2020
- Subjects: Chrysoblepus laticeps -- Climatic factors , Sparidae -- Genetics , Sparidae -- South Africa -- Climatic factors
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/145133 , vital:38411
- Description: Exploitation of fish populations can exacerbate the effects of climate change, yet our understanding of their synergistic effects remains limited. As fish are increasingly exposed to temperatures on the edges of their optimal thermal performance window, their physiological response is expected to shape their future performance. It is therefore concerning that exploitation can select for specific physiological phenotypes, as this may affect fished populations’ physiological response to temperature change. A recent laboratory study revealed fewer high-performance metabolic-scope phenotypes in an exploited population of the marine Sparid Chrysoblepus laticeps across a range of experimental temperatures in comparison to an unexploited population. This suggested that individuals in exploited populations may have less available energy for aerobic performance at thermal extremes, which may reduce the resilience of the population to changes in temperature. However, since laboratory experiments exclude numerous other variables that fish encounter in the wild, it was necessary to test this finding in a natural setting. This thesis aimed to further develop the laboratory study by assessing whether exploitation effects the wild energetic response of C. laticeps to thermal variability. To achieve this, the field metabolic rate of C. laticeps, a resident and endemic South African fish, from a near-pristine population (Tsitsikamma National Park) and a heavily exploited population (Port Elizabeth) was compared using acoustic accelerometry. A laboratory-based study using a swim-tunnel respirometer and accelerometer transmitters was conducted to develop a model to predict metabolic rate from acceleration data at temperatures from 10 to 22⁰C. Acceleration, temperature, mass and population (exploited/unexploited) were found to be the best predictors of the metabolic rate of C. laticeps and were incorporated into the model to estimate the field metabolic rate of fish tagged with acoustic accelerometers in the wild. To examine the combined effects of temperature and exploitation on the field metabolic rate of C. laticeps in their natural state, two fine-scale telemetry arrays with temperature loggers were used to assess the acceleration of the fish across different temperatures in the wild for three months during a period of high thermal variability. Ten fish from the exploited and unexploited populations were caught, surgically implanted with accelerometer transmitters and released back into the wild. Close to 500 000 and 400 000 acceleration estimates were recorded from wild exploited and unexploited fish, respectively. The field metabolic rate of both populations was estimated by combining the field acceleration and temperature data with the laboratory calibration model. The field metabolic rate of C. laticeps from the exploited population was constrained near cold and warm extremes compared to no constraints observed in the unexploited population. This was attributed to reduced inter-individual variability in the field metabolic rate-temperature relationship within the exploited population. There appeared to be a greater proportion of individuals that maintained a high field metabolic rate at extreme temperatures in the unexploited population. In contrast, all but one fish from the exploited population did not maintain a high field metabolic rate at extreme temperatures. These findings aligned with the laboratory-based metabolic-scope study on both populations of C. laticeps and demonstrate that passive-fishing may be removing thermally tolerant individuals and rendering exploited populations less resilient to thermal change. These findings are discussed in the context of fisheries management and particularly on the role that marine protected areas could play in maintaining physiological diversity, and therefore the resilience of fish in the Anthropocene. This study highlights the importance of applied conservation physiology in understanding the consequences of fisheries-induced evolution in an increasingly variable climate.
- Full Text:
- Date Issued: 2020
Understanding a West African recreational fishery as a complex social-ecological system – a case study of the fishery for giant African threadfin Polydactylus quadrifilis (Cuvier, 1829) in the Kwanza Estuary, Angola
- Authors: Butler, Edward C
- Date: 2020
- Subjects: Cuanza River (Angola) , Fishing -- Angola , Polynemidae , Fishes -- Angola -- Ecology
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/146688 , vital:38548
- Description: Despite increasing global recognition of the importance of recreational fisheries, their management largely remains poor. This is because they exhibit unique human-nature relationships and are nested within complex social-ecological systems (SESs). Recreational fisheries in the developing world have large potential for socio-economic development, but are generally underappreciated, in terms of their value and their impact, and are poorly governed. This is particularly concerning as they are highly complex and often compete for resources with dependent artisanal and subsistence fisheries. Developing world recreational fishery SESs are not well understood and present an important research gap for improved governance. The general aim of this thesis was to explore the recreational fishery targeting Polydactylus quadrifilis on the Kwanza Estuary, Angola, and provide context for how managers should approach recreational fisheries in the developing world and in Africa. To do this, the recreational fishery SES was explored using a combination of methodologies including those characteristic of traditional fisheries science, and new methods involving biology, sociology, and economics. The thesis contains an introductory chapter, a chapter describing the background, study area and study species, five data chapters and a discussion chapter. Chapter 3 aimed to investigate the reproductive style of P. quadrifilis. Results identified the species as a protandrous hermaphrodite. Evidence to suggest this included degenerating testicular tissue and the presence of early developing ovarian tissues in transitional individuals. Early-stage oocytes were commonly found in the outer area of male regions and residual late-stage spermatids and spermatozoa were found in the luminal space of ovarian regions, suggesting a process of sex change from the outside inwards. Owing to the species’ reliance on large highly fecund females for reproduction, it is likely that P. quadrifilis will be sensitive to fisheries that target larger individuals, such as trophy recreational fisheries and line fisheries within other sectors. Chapter 4 aimed to investigate alternative methods for adequately describing the growth of P. quadrifilis individuals belonging to either one of two distinct hypothetical life-history pathways: pathway I (‘changers’) – initial maturation as a primary male followed by a sex change to female; pathway II (‘non-changers’) – initial maturation as a male fish with no subsequent sex change, using von Bertalanffy Growth Functions (VBGFs). Other specific objectives included determining the size- and age-at-maturity and size- and age-at-sex-change for P. quadrifilis. Otolith aging revealed rapid growth and early maturation (L50 = 399.2 mm FL, A50 = 1.50 years) and sex change occurred over a wide size (790–1125 mm FL) and age (3–8 years) range. There was strong evidence for partial protandry in P. quadrifilis with several extremely old male fish (up to 22 years) observed in the population. When compared to the conventional model produced for the entire population, there were significant differences in the models for the ‘non-changers’ (LRT, p < 0.01) and their parameters L∞ (full model = 130.8, ‘non-changers’ = 113.3, p < 0.01), k (0.32, 0.44, p < 0.01) and t0 (0.23, 0.43, p = 0.03) in the first approach and the models (LRT, p < 0.01) and their L∞ (‘changers’ = 113.7, p < 0.01) values in the second approach. This suggests that utilising conventional modelling techniques may be inappropriate for the stock assessment and management of P. quadrifilis and, potentially, other sequentially hermaphroditic fishery species. Chapter 5 aimed to assess the sensitivity of P. quadrifilis to recreational C&R within the foreign recreational fishery using a rapid assessment approach. To do this, a number of C&R variables including fight time, air exposure, hook placement, hooking injury, total time of the stress event, river depth and angling method were measured and related to two indicators of fish health and survival – the physiological stress indicators blood glucose and blood lactate concentration and reflex action mortality predictors (RAMPs). Air exposure was identified as a major contributor to motor impairment (Cumulative Link Model: p < 0.01) and fight time was an important contributor to motor impairment via its interaction with air exposure (Cumulative Link Model: p = 0.02). Handling practices appear to be particularly important for larger individuals as fish size was positively correlated with air exposure (Pearson’s r coefficient = 0.41, p < 0.01) and fight times (0.88, p < 0.01). The findings suggest that recreational C&R may result in mortalities directly, via C&R, and indirectly, via predation, and several recommendations were made for best practice. Chapter 6 aimed to assess the direct economic contribution of the recreational fishery for Polydactylus quadrifilis on the Kwanza Estuary. Results indicated that the recreational fishery for contributed significantly to the economy of an area that would otherwise likely receive little external input ($282 054 per four-month fishing season). However, high rates of economic leakage from the study area were identified (58.7%–92.9% of locally spent revenue) and were attributed to the sourcing of lodge supplies, services and staff outside of the local area and the repatriation of profit by foreign business owners. Capacity building within the local community is likely required to develop ‘linkages’ between the local community and the recreational fishery. Greater community involvement in the fishery is suggested to incentivise the protection of recreationally important fishery species and their associated ecosystems. Chapter 7 aimed to investigate the resource user groups involved within the SES. Results illustrated that artisanal and domestic recreational anglers are well-established and are characterised by long histories of participation. The artisanal fishery was highly valued as a source of livelihoods for the local community. Artisanal fishers were eager for involvement in the recreational sector, through the chartering of their vessels, due to the attractiveness of extra earnings. Both recreational and artisanal fishers reported recent decreases in P. quadrifilis catch and anticipated further declines. Domestic recreational anglers appeared to be highly consumptive in their use of the fishery and C&R angling was uncommon. User conflict may be problematic for future management as recreational anglers perceived the artisanal gill-net fishery to be a threat towards P. quadrifilis stocks. In conclusion, the open-access nature of the fishery was identified as the most pertinent threat to its sustainability and likely needs to be addressed. Potential solutions involve offering users the opportunity to purchase access rights (e.g. day permits), thus initiating the concept that users must pay for their use of public resources. Management should aim to protect large female fish due to their increased reproductive value and worth as trophy fish. Thus, C&R angling is likely to be an important interaction between users and the resource. However, angler behaviour will need to be manipulated to promote C&R and minimise C&R-related mortalities. Solutions include angler educational drives and interventions and the implementation of competitive C&R-only angling. Foreign recreational fisheries, although touted as potential ecotourism ventures, will only succeed in improving the lives of local people if they fully integrate the community into the operation of the fishery.
- Full Text:
- Date Issued: 2020
- Authors: Butler, Edward C
- Date: 2020
- Subjects: Cuanza River (Angola) , Fishing -- Angola , Polynemidae , Fishes -- Angola -- Ecology
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/146688 , vital:38548
- Description: Despite increasing global recognition of the importance of recreational fisheries, their management largely remains poor. This is because they exhibit unique human-nature relationships and are nested within complex social-ecological systems (SESs). Recreational fisheries in the developing world have large potential for socio-economic development, but are generally underappreciated, in terms of their value and their impact, and are poorly governed. This is particularly concerning as they are highly complex and often compete for resources with dependent artisanal and subsistence fisheries. Developing world recreational fishery SESs are not well understood and present an important research gap for improved governance. The general aim of this thesis was to explore the recreational fishery targeting Polydactylus quadrifilis on the Kwanza Estuary, Angola, and provide context for how managers should approach recreational fisheries in the developing world and in Africa. To do this, the recreational fishery SES was explored using a combination of methodologies including those characteristic of traditional fisheries science, and new methods involving biology, sociology, and economics. The thesis contains an introductory chapter, a chapter describing the background, study area and study species, five data chapters and a discussion chapter. Chapter 3 aimed to investigate the reproductive style of P. quadrifilis. Results identified the species as a protandrous hermaphrodite. Evidence to suggest this included degenerating testicular tissue and the presence of early developing ovarian tissues in transitional individuals. Early-stage oocytes were commonly found in the outer area of male regions and residual late-stage spermatids and spermatozoa were found in the luminal space of ovarian regions, suggesting a process of sex change from the outside inwards. Owing to the species’ reliance on large highly fecund females for reproduction, it is likely that P. quadrifilis will be sensitive to fisheries that target larger individuals, such as trophy recreational fisheries and line fisheries within other sectors. Chapter 4 aimed to investigate alternative methods for adequately describing the growth of P. quadrifilis individuals belonging to either one of two distinct hypothetical life-history pathways: pathway I (‘changers’) – initial maturation as a primary male followed by a sex change to female; pathway II (‘non-changers’) – initial maturation as a male fish with no subsequent sex change, using von Bertalanffy Growth Functions (VBGFs). Other specific objectives included determining the size- and age-at-maturity and size- and age-at-sex-change for P. quadrifilis. Otolith aging revealed rapid growth and early maturation (L50 = 399.2 mm FL, A50 = 1.50 years) and sex change occurred over a wide size (790–1125 mm FL) and age (3–8 years) range. There was strong evidence for partial protandry in P. quadrifilis with several extremely old male fish (up to 22 years) observed in the population. When compared to the conventional model produced for the entire population, there were significant differences in the models for the ‘non-changers’ (LRT, p < 0.01) and their parameters L∞ (full model = 130.8, ‘non-changers’ = 113.3, p < 0.01), k (0.32, 0.44, p < 0.01) and t0 (0.23, 0.43, p = 0.03) in the first approach and the models (LRT, p < 0.01) and their L∞ (‘changers’ = 113.7, p < 0.01) values in the second approach. This suggests that utilising conventional modelling techniques may be inappropriate for the stock assessment and management of P. quadrifilis and, potentially, other sequentially hermaphroditic fishery species. Chapter 5 aimed to assess the sensitivity of P. quadrifilis to recreational C&R within the foreign recreational fishery using a rapid assessment approach. To do this, a number of C&R variables including fight time, air exposure, hook placement, hooking injury, total time of the stress event, river depth and angling method were measured and related to two indicators of fish health and survival – the physiological stress indicators blood glucose and blood lactate concentration and reflex action mortality predictors (RAMPs). Air exposure was identified as a major contributor to motor impairment (Cumulative Link Model: p < 0.01) and fight time was an important contributor to motor impairment via its interaction with air exposure (Cumulative Link Model: p = 0.02). Handling practices appear to be particularly important for larger individuals as fish size was positively correlated with air exposure (Pearson’s r coefficient = 0.41, p < 0.01) and fight times (0.88, p < 0.01). The findings suggest that recreational C&R may result in mortalities directly, via C&R, and indirectly, via predation, and several recommendations were made for best practice. Chapter 6 aimed to assess the direct economic contribution of the recreational fishery for Polydactylus quadrifilis on the Kwanza Estuary. Results indicated that the recreational fishery for contributed significantly to the economy of an area that would otherwise likely receive little external input ($282 054 per four-month fishing season). However, high rates of economic leakage from the study area were identified (58.7%–92.9% of locally spent revenue) and were attributed to the sourcing of lodge supplies, services and staff outside of the local area and the repatriation of profit by foreign business owners. Capacity building within the local community is likely required to develop ‘linkages’ between the local community and the recreational fishery. Greater community involvement in the fishery is suggested to incentivise the protection of recreationally important fishery species and their associated ecosystems. Chapter 7 aimed to investigate the resource user groups involved within the SES. Results illustrated that artisanal and domestic recreational anglers are well-established and are characterised by long histories of participation. The artisanal fishery was highly valued as a source of livelihoods for the local community. Artisanal fishers were eager for involvement in the recreational sector, through the chartering of their vessels, due to the attractiveness of extra earnings. Both recreational and artisanal fishers reported recent decreases in P. quadrifilis catch and anticipated further declines. Domestic recreational anglers appeared to be highly consumptive in their use of the fishery and C&R angling was uncommon. User conflict may be problematic for future management as recreational anglers perceived the artisanal gill-net fishery to be a threat towards P. quadrifilis stocks. In conclusion, the open-access nature of the fishery was identified as the most pertinent threat to its sustainability and likely needs to be addressed. Potential solutions involve offering users the opportunity to purchase access rights (e.g. day permits), thus initiating the concept that users must pay for their use of public resources. Management should aim to protect large female fish due to their increased reproductive value and worth as trophy fish. Thus, C&R angling is likely to be an important interaction between users and the resource. However, angler behaviour will need to be manipulated to promote C&R and minimise C&R-related mortalities. Solutions include angler educational drives and interventions and the implementation of competitive C&R-only angling. Foreign recreational fisheries, although touted as potential ecotourism ventures, will only succeed in improving the lives of local people if they fully integrate the community into the operation of the fishery.
- Full Text:
- Date Issued: 2020
Understanding biotic interactions in invaded pond communities in the Sundays River irrigation network, South Africa
- Authors: Mofu, Lubabalo
- Date: 2020
- Subjects: Mozambique tilapia -- South Africa -- Sundays River (Eastern Cape) , Western mosquitofish -- South Africa -- Sundays River (Eastern Cape) , Gobiidae -- South Africa -- Sundays River (Eastern Cape) , Clupeidae -- South Africa -- Sundays River (Eastern Cape) , Reservoirs -- South Africa -- Sundays River (Eastern Cape) , Zooplankton -- South Africa -- Sundays River (Eastern Cape) , Freshwater ecology -- South Africa -- Sundays River (Eastern Cape) , Biotic communities -- South Africa -- Sundays River (Eastern Cape) , Fishes -- Effect of temperature on -- South Africa -- Sundays River (Eastern Cape) , Stable isotopes , Relative Impact Potential
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/167089 , vital:41436
- Description: The Sundays River valley irrigation ponds provide a unique opportunity to investigate biotic interactions within a biological invasions context, as they contain both native and non-native fish species. This study focusses on two native species (Glossogobius callidus and Gilchristella aestuaria) and two non-native species (Oreochromis mossambicus and Gambusia affinis). The ecology of the ponds was driven by physico-chemical variables, mainly temperature, but the interactions between fishes were a complex interplay between temperature, pond community ecology and food web structure. Seasonal changes in temperature and subsequent fluctuations in water levels resulted in changes in zooplankton community. Chlorophyll-a, temperature, G. callidus and G. affinis were the drivers of the seasonal changes in macroinvertebrate composition. Stable isotope analysis identified substantial ontogenetic dietary shifts in all species, corresponding to changes in body size. Stable isotope analysis revealed that the niche space occupied by G. affinis was broad and overlapped with that of the other three focal species. Stable isotope metrics showed that G. affinis and O. mossambicus utilised a wide range of resources compared to G. callidus and G. aestuaria. Stomach content analysis showed that G. callidus, O. mossambicus and G. affinis fed predominantly on benthic resources, while G. aestuaria fed mainly plankton resources. Functional response experiments revealed that G. callidus and G. affinis both displayed Type II functional responses. In single fish trials, G. affinis had significantly higher functional responses than G. callidus. In heterospecific G. callidus-G. affinis combinations the functional response of G. callidus was reduced by the presence of G. affinis, whereas, this combination greatly enhanced G. affinis functional response magnitudes. The functional response of G. callidus, O. mossambicus and G. affinis under two temperature treatments along with fish abundance data was used to determine temporal differences in the ecological impacts of each fish species between seasons. The relative impact potential of O. mossambicus was consistently higher than that of G. callidus and G. affinis. This study demonstrates how seasonal temperature fluctuations affect the relative impact capacities of introduced species. Overall, this thesis showed that high temperature along with life-history traits contributes to the biotic interactions between native and non-native species in novel environments.
- Full Text:
- Date Issued: 2020
- Authors: Mofu, Lubabalo
- Date: 2020
- Subjects: Mozambique tilapia -- South Africa -- Sundays River (Eastern Cape) , Western mosquitofish -- South Africa -- Sundays River (Eastern Cape) , Gobiidae -- South Africa -- Sundays River (Eastern Cape) , Clupeidae -- South Africa -- Sundays River (Eastern Cape) , Reservoirs -- South Africa -- Sundays River (Eastern Cape) , Zooplankton -- South Africa -- Sundays River (Eastern Cape) , Freshwater ecology -- South Africa -- Sundays River (Eastern Cape) , Biotic communities -- South Africa -- Sundays River (Eastern Cape) , Fishes -- Effect of temperature on -- South Africa -- Sundays River (Eastern Cape) , Stable isotopes , Relative Impact Potential
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/167089 , vital:41436
- Description: The Sundays River valley irrigation ponds provide a unique opportunity to investigate biotic interactions within a biological invasions context, as they contain both native and non-native fish species. This study focusses on two native species (Glossogobius callidus and Gilchristella aestuaria) and two non-native species (Oreochromis mossambicus and Gambusia affinis). The ecology of the ponds was driven by physico-chemical variables, mainly temperature, but the interactions between fishes were a complex interplay between temperature, pond community ecology and food web structure. Seasonal changes in temperature and subsequent fluctuations in water levels resulted in changes in zooplankton community. Chlorophyll-a, temperature, G. callidus and G. affinis were the drivers of the seasonal changes in macroinvertebrate composition. Stable isotope analysis identified substantial ontogenetic dietary shifts in all species, corresponding to changes in body size. Stable isotope analysis revealed that the niche space occupied by G. affinis was broad and overlapped with that of the other three focal species. Stable isotope metrics showed that G. affinis and O. mossambicus utilised a wide range of resources compared to G. callidus and G. aestuaria. Stomach content analysis showed that G. callidus, O. mossambicus and G. affinis fed predominantly on benthic resources, while G. aestuaria fed mainly plankton resources. Functional response experiments revealed that G. callidus and G. affinis both displayed Type II functional responses. In single fish trials, G. affinis had significantly higher functional responses than G. callidus. In heterospecific G. callidus-G. affinis combinations the functional response of G. callidus was reduced by the presence of G. affinis, whereas, this combination greatly enhanced G. affinis functional response magnitudes. The functional response of G. callidus, O. mossambicus and G. affinis under two temperature treatments along with fish abundance data was used to determine temporal differences in the ecological impacts of each fish species between seasons. The relative impact potential of O. mossambicus was consistently higher than that of G. callidus and G. affinis. This study demonstrates how seasonal temperature fluctuations affect the relative impact capacities of introduced species. Overall, this thesis showed that high temperature along with life-history traits contributes to the biotic interactions between native and non-native species in novel environments.
- Full Text:
- Date Issued: 2020
A physiological study on a commercial reef fish to quantify the relationship between exploitation and climate change resilience
- Authors: Duncan, Murray Ian
- Date: 2019
- Subjects: Chrysoblephus laticeps -- Climatic factors , Chrysoblephus laticeps -- Physiology , Sparidae -- South Africa -- Climatic factors , Reef fishes -- South Africa -- Climatic factors , Fish populations -- South Africa -- Climatic factors , Fish populations -- Measurement , Fish populations -- Monitoring , Fisheries -- South Africa -- Environmental aspects , Ocean temperature -- Physiological effect -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/76541 , vital:30599
- Description: The persistence of harvested fish populations in the Anthropocene will be determined, above all, by how they respond to the interacting effects of climate change and fisheries exploitation. Predicting how populations will respond to both these threats is essential for any adaptive and sustainable management strategy. The response of fish populations to climate change is underpinned by physiological rates and tolerances, and emerging evidence suggests there may be physiological-based selection in capture fisheries. By quantifying important physiological rates of a model species, the endemic seabream, Chrysoblephus laticeps, across ecologically relevant thermal gradients and from populations subjected to varying intensities of commercial exploitation, this thesis aimed to 1) provide the first physiologically grounded climate resilience assessment for a South African linefish species, and 2) elucidate whether exploitation can drive populations to less physiologically resilient states in response to climate change. To identify physiologically limiting sea temperatures and to determine if exploitation alters physiological trait distributions, an intermittent flow respirometry experiment was used to test the metabolic response of spatially protected and exploited populations of C. laticeps to acute thermal variability. Exploited populations showed reduced metabolic phenotype diversity, fewer high-performance aerobic scope phenotypes, and a significantly lower aerobic scope curve across all test temperatures. Although both populations maintained a relatively high aerobic scope across a wide thermal range, their metabolic rates were compromised when extreme cold events were simulated (8 °C), suggesting that predicted future increases in upwelling frequency and intensity may be the primary limiting factor in a more thermally variable future ocean. The increment widths of annuli in the otoliths of C. laticeps from contemporary and historic collections were measured, as a proxy for the annual growth rate of exploited and protected populations. Hierarchical mixed models were used to partition growth variation within and among individuals and ascribe growth to intrinsic and extrinsic effects. The best model for the protected population indicated that the growth response of C. laticeps was poorer during years characterised by a high cumulative upwelling intensity, and better during years characterised by higher mean autumn sea surface temperatures. The exploited population growth chronology was too short to identify an extrinsic growth driver. The growth results again highlight the role of thermal variability in modulating the response of C. laticeps to its ambient environment and indicate that the predicted increases in upwelling frequency and intensity may constrain future growth rates of this species. A metabolic index (ϕ), representing the ratio of O2 supply to demand at various temperatures and oxygen concentrations, was estimated for exploited and protected populations of C. laticeps and used to predict future distribution responses. There was no difference in the laboratory calibrations of ϕ between populations, and all data was subsequently combined into a single piecewise (12 °C) calibrated ϕ model. To predict the distribution of C. laticeps, ϕ was projected across a high-resolution ocean model of the South African coastal zone, and a species distribution model implemented using the random forest algorithm and C. laticeps occurrence points. The future distribution of C. laticeps was estimated by predicting trained models across ocean model projections up to 2100. The best predictor of C. laticeps’ current distribution was minimum monthly ϕ and future predictions indicated only a slight range contraction on either edge of C. laticeps’ distribution by 2100. In order to provide policy makers, currently developing climate change management frameworks for South Africa’s ocean, with a usable output, the results of all research chapters were combined into a marine spatial model. The spatial model identified areas where C. laticeps is predicted to be resilient to climate change in terms of physiology, growth and distribution responses, which can then be prioritised for adaptation measures, such as spatial protection from exploitation. While these results are specific to C. laticeps, the methodology developed to identify areas of climate resilience has broad applications across taxa. From a global perspective, perhaps the most salient points to consider from this case study are the evidence of selective exploitation on physiological traits and the importance of environmental variability, rather than long-term mean climate changes, in affecting organism performance. These ideas are congruent with the current paradigm shift in how we think of the ocean, selective fisheries, and how they relate to organism climate resilience.
- Full Text:
- Date Issued: 2019
- Authors: Duncan, Murray Ian
- Date: 2019
- Subjects: Chrysoblephus laticeps -- Climatic factors , Chrysoblephus laticeps -- Physiology , Sparidae -- South Africa -- Climatic factors , Reef fishes -- South Africa -- Climatic factors , Fish populations -- South Africa -- Climatic factors , Fish populations -- Measurement , Fish populations -- Monitoring , Fisheries -- South Africa -- Environmental aspects , Ocean temperature -- Physiological effect -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/76541 , vital:30599
- Description: The persistence of harvested fish populations in the Anthropocene will be determined, above all, by how they respond to the interacting effects of climate change and fisheries exploitation. Predicting how populations will respond to both these threats is essential for any adaptive and sustainable management strategy. The response of fish populations to climate change is underpinned by physiological rates and tolerances, and emerging evidence suggests there may be physiological-based selection in capture fisheries. By quantifying important physiological rates of a model species, the endemic seabream, Chrysoblephus laticeps, across ecologically relevant thermal gradients and from populations subjected to varying intensities of commercial exploitation, this thesis aimed to 1) provide the first physiologically grounded climate resilience assessment for a South African linefish species, and 2) elucidate whether exploitation can drive populations to less physiologically resilient states in response to climate change. To identify physiologically limiting sea temperatures and to determine if exploitation alters physiological trait distributions, an intermittent flow respirometry experiment was used to test the metabolic response of spatially protected and exploited populations of C. laticeps to acute thermal variability. Exploited populations showed reduced metabolic phenotype diversity, fewer high-performance aerobic scope phenotypes, and a significantly lower aerobic scope curve across all test temperatures. Although both populations maintained a relatively high aerobic scope across a wide thermal range, their metabolic rates were compromised when extreme cold events were simulated (8 °C), suggesting that predicted future increases in upwelling frequency and intensity may be the primary limiting factor in a more thermally variable future ocean. The increment widths of annuli in the otoliths of C. laticeps from contemporary and historic collections were measured, as a proxy for the annual growth rate of exploited and protected populations. Hierarchical mixed models were used to partition growth variation within and among individuals and ascribe growth to intrinsic and extrinsic effects. The best model for the protected population indicated that the growth response of C. laticeps was poorer during years characterised by a high cumulative upwelling intensity, and better during years characterised by higher mean autumn sea surface temperatures. The exploited population growth chronology was too short to identify an extrinsic growth driver. The growth results again highlight the role of thermal variability in modulating the response of C. laticeps to its ambient environment and indicate that the predicted increases in upwelling frequency and intensity may constrain future growth rates of this species. A metabolic index (ϕ), representing the ratio of O2 supply to demand at various temperatures and oxygen concentrations, was estimated for exploited and protected populations of C. laticeps and used to predict future distribution responses. There was no difference in the laboratory calibrations of ϕ between populations, and all data was subsequently combined into a single piecewise (12 °C) calibrated ϕ model. To predict the distribution of C. laticeps, ϕ was projected across a high-resolution ocean model of the South African coastal zone, and a species distribution model implemented using the random forest algorithm and C. laticeps occurrence points. The future distribution of C. laticeps was estimated by predicting trained models across ocean model projections up to 2100. The best predictor of C. laticeps’ current distribution was minimum monthly ϕ and future predictions indicated only a slight range contraction on either edge of C. laticeps’ distribution by 2100. In order to provide policy makers, currently developing climate change management frameworks for South Africa’s ocean, with a usable output, the results of all research chapters were combined into a marine spatial model. The spatial model identified areas where C. laticeps is predicted to be resilient to climate change in terms of physiology, growth and distribution responses, which can then be prioritised for adaptation measures, such as spatial protection from exploitation. While these results are specific to C. laticeps, the methodology developed to identify areas of climate resilience has broad applications across taxa. From a global perspective, perhaps the most salient points to consider from this case study are the evidence of selective exploitation on physiological traits and the importance of environmental variability, rather than long-term mean climate changes, in affecting organism performance. These ideas are congruent with the current paradigm shift in how we think of the ocean, selective fisheries, and how they relate to organism climate resilience.
- Full Text:
- Date Issued: 2019
Secret sex lives in the intertidal: insights into the mating systems of clinid fishes from molecular parentage analyses
- Authors: Scheeper, Martinus Johannes
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72438 , vital:30048
- Description: Expected release date-April 2020
- Full Text: false
- Date Issued: 2019
- Authors: Scheeper, Martinus Johannes
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72438 , vital:30048
- Description: Expected release date-April 2020
- Full Text: false
- Date Issued: 2019
The development of a larval feeding regimen for dusky kob, Argyrosomus japonicus, with a specific focus on the effect of weaning period on larval development and survival
- Authors: Keet, Thomas
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/96897 , vital:31344
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
- Authors: Keet, Thomas
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/96897 , vital:31344
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
The development of a larval feeding regimen for dusky kob, Argyrosomus japonicus, with a specific focus on the effect of weaning period on larval development and survival
- Authors: Keet, Thomas
- Date: 2019
- Subjects: Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Larvae , Argyrosomus -- Larvae , Argyrosomus japonicus -- Larvae -- Nutrition , Argyrosomus -- Larvae -- Nutrition
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/146577 , vital:38538
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
- Authors: Keet, Thomas
- Date: 2019
- Subjects: Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Larvae , Argyrosomus -- Larvae , Argyrosomus japonicus -- Larvae -- Nutrition , Argyrosomus -- Larvae -- Nutrition
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/146577 , vital:38538
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
The effect of bait on fine-scale habitat associations of reef fish investigated with remote underwater video systems
- Authors: Schmidt, Nicholas C
- Date: 2019
- Subjects: Baited remote underwater stereo-video systems (stereo-BRUVs) , Remote underwater stereo-video systems , Underwater videography in wildlife monitoring -- South Africa -- Tsitsikamma , Fish stock assessment -- South Africa -- Tsitsikamma , Fish populations -- Monitoring -- South Africa -- Tsitsikamma , Fishes -- Habitat -- South Africa -- Tsitsikamma
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68380 , vital:29249
- Description: Establishing the associations between fish and their habitats can aid in the monitoring of fish stocks and the design of effective marine protected areas (MPAs). Baited remote underwater stereo-video systems (stereo-BRUVs) are now commonly used to asses fish populations. The habitats seen in the video footage of stereo-BRUVs can be used to link fish fauna to preferred habitat types. However, the application of bait potentially attracts fish from surrounding habitats, and might result in a biased understanding of fish–habitat associations. A field study was conducted in the Tsitsikamma National Park MPA to determine the effect of bait on fine-scale fish–habitat associations, using remote photographic and video methods. The study was conducted over the summer season of 2015 and 2016. Data were collected within a 1x1 km shallow (9–44 m) reef complex. Within the sampling area, 944 photo-quadrats of the macrobenthos were taken 30 m apart by means of a drop camera. By separating the macrobenthos into broad taxonomic groups, five habitat types were identified, namely Shallow Sand, Shallow Reef, Deep Reef, Deep Sand and Patch Reef. The results show that even on a fine scale, depth is an important predictor of macrobenthic distribution and assemblage structure. Baited (stereo-BRUVs) and unbaited (stereo-RUVs) surveys were then conducted to sample the fish community in the same area during the period under study. Higher abundances of fish were observed in reef than in sandy habitats, and bait was seen to have a positive effect on species richness and fish abundance. When comparing habitats, fish abundance and composition on reef habitats were significantly different from sand habitats. This was observed in both the stereo-RUVs and stereo-BRUVs methods. High counts of roman (Chrysoblephus laticeps), fransmadam (Boopsoidea inornata) and steentjie (Spondyliosoma emarginatum) in reef habitats were contrasted by high counts of white sea catfish (Galeichthys feliceps), evil-eye puffer (Amblyrhynchotes honckenii) and lesser guitarfish (Rhinecanthus annulatus) in sandy habitats. Overall, the underlying patterns in fish diversity recorded with the two video methods were generally comparable. However, stereo-RUVs appeared to be unable to detect species that were present in sand habitats, while stereo-BRUVs increased the number and abundance of species recorded in all habitat types. In the stereo-RUVs footage, differences between reef habitats were dampened by the presence of highly abundant fish species. In the stereo-BRUVs footage, although bait appeared to have an effect on the observed fish assemblage, this manifested in an increase in species richness, higher fish abundances and a better overall ability to detect fish–habitat relationships. As such, stereo-BRUVs are considered a robust, effective and recommended method for detecting fish–habitat relationships, even over a fine scale.
- Full Text:
- Date Issued: 2019
- Authors: Schmidt, Nicholas C
- Date: 2019
- Subjects: Baited remote underwater stereo-video systems (stereo-BRUVs) , Remote underwater stereo-video systems , Underwater videography in wildlife monitoring -- South Africa -- Tsitsikamma , Fish stock assessment -- South Africa -- Tsitsikamma , Fish populations -- Monitoring -- South Africa -- Tsitsikamma , Fishes -- Habitat -- South Africa -- Tsitsikamma
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68380 , vital:29249
- Description: Establishing the associations between fish and their habitats can aid in the monitoring of fish stocks and the design of effective marine protected areas (MPAs). Baited remote underwater stereo-video systems (stereo-BRUVs) are now commonly used to asses fish populations. The habitats seen in the video footage of stereo-BRUVs can be used to link fish fauna to preferred habitat types. However, the application of bait potentially attracts fish from surrounding habitats, and might result in a biased understanding of fish–habitat associations. A field study was conducted in the Tsitsikamma National Park MPA to determine the effect of bait on fine-scale fish–habitat associations, using remote photographic and video methods. The study was conducted over the summer season of 2015 and 2016. Data were collected within a 1x1 km shallow (9–44 m) reef complex. Within the sampling area, 944 photo-quadrats of the macrobenthos were taken 30 m apart by means of a drop camera. By separating the macrobenthos into broad taxonomic groups, five habitat types were identified, namely Shallow Sand, Shallow Reef, Deep Reef, Deep Sand and Patch Reef. The results show that even on a fine scale, depth is an important predictor of macrobenthic distribution and assemblage structure. Baited (stereo-BRUVs) and unbaited (stereo-RUVs) surveys were then conducted to sample the fish community in the same area during the period under study. Higher abundances of fish were observed in reef than in sandy habitats, and bait was seen to have a positive effect on species richness and fish abundance. When comparing habitats, fish abundance and composition on reef habitats were significantly different from sand habitats. This was observed in both the stereo-RUVs and stereo-BRUVs methods. High counts of roman (Chrysoblephus laticeps), fransmadam (Boopsoidea inornata) and steentjie (Spondyliosoma emarginatum) in reef habitats were contrasted by high counts of white sea catfish (Galeichthys feliceps), evil-eye puffer (Amblyrhynchotes honckenii) and lesser guitarfish (Rhinecanthus annulatus) in sandy habitats. Overall, the underlying patterns in fish diversity recorded with the two video methods were generally comparable. However, stereo-RUVs appeared to be unable to detect species that were present in sand habitats, while stereo-BRUVs increased the number and abundance of species recorded in all habitat types. In the stereo-RUVs footage, differences between reef habitats were dampened by the presence of highly abundant fish species. In the stereo-BRUVs footage, although bait appeared to have an effect on the observed fish assemblage, this manifested in an increase in species richness, higher fish abundances and a better overall ability to detect fish–habitat relationships. As such, stereo-BRUVs are considered a robust, effective and recommended method for detecting fish–habitat relationships, even over a fine scale.
- Full Text:
- Date Issued: 2019
The integration of effluent treatment using constructed wetlands, with crop production and aquaculture
- Authors: de Jong, Martyn
- Date: 2019
- Subjects: Recycling (Waste, etc.) , Brewery waste , Sewage -- Purification , Beets , Mozambique tilapia
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/95767 , vital:31197
- Description: Breweries are major consumers of water and produce nutrient rich wastewater. Therefore, it is important to research technologies that optimise the reuse and recycling of this waste. This study compared different constructed wetlands (CWs) in terms of their potential for cleaning brewery effluent and simultaneously producing crops Beta vulgaris and fish Oreochromis mossambicus. Filling and draining times (FDT; 15 min, 30 min and 60 min) in tidal CWs were compared in Experiment 1. The 15 min FDT (6.52 ± 0.09 mg/l) and 30 min FDT (5.74 ± 0.09 mg/l) had higher dissolved oxygen (DO) than the 60 min FDT (5.40 ± 0.09 mg/l; p<0.05). This resulted in the 15 and 30 min FDT treatments reaching ammonia effluent discharge standards sooner than the 60 min FDT. Total plant harvest increased with increasing FDT; therefore, 15 min FDT was used as the FDT in tidal treatments in the following experiments. The aerated CW (5.81 ± 0.07 mg/l) and tidal CW (5.67 ± 0.07 mg/l) treatments had higher DO concentrations than the unaerated CW treatment (3.76 ± 0.07 mg/l; p<0.05) in Experiment 2. This resulted in lower ammonia concentrations on day 5 in the aerated and tidal CWs compared with the unaerated treatment (p<0.05). The tidal CW (23.97 ± 2.57 kg) had a total harvest that was approximately four times higher than the unaerated CW (p<0.05), which had the highest frequency of chlorosis and plant mortality; and was unable to treat ammonia to discharge standards. In Experiment 3, the aerated and tidal CW were compared with municipal-water as water sources for aquaculture. There were no differences in fish growth (p > 0.05). However, there were differences in water quality; with the municipal treatment having the lowest pH, EC and nitrate concentration (p<0.05); but all water quality parameters remained in a range suitably for fish production. Due to the tidal CW having the highest plant harvest and lowest frequency of chlorosis and mortality; it was the most suitable CW technology to clean the brewery effluent, and to produce B. vulgaris and water that could be used downstream in aquaculture.
- Full Text:
- Date Issued: 2019
- Authors: de Jong, Martyn
- Date: 2019
- Subjects: Recycling (Waste, etc.) , Brewery waste , Sewage -- Purification , Beets , Mozambique tilapia
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/95767 , vital:31197
- Description: Breweries are major consumers of water and produce nutrient rich wastewater. Therefore, it is important to research technologies that optimise the reuse and recycling of this waste. This study compared different constructed wetlands (CWs) in terms of their potential for cleaning brewery effluent and simultaneously producing crops Beta vulgaris and fish Oreochromis mossambicus. Filling and draining times (FDT; 15 min, 30 min and 60 min) in tidal CWs were compared in Experiment 1. The 15 min FDT (6.52 ± 0.09 mg/l) and 30 min FDT (5.74 ± 0.09 mg/l) had higher dissolved oxygen (DO) than the 60 min FDT (5.40 ± 0.09 mg/l; p<0.05). This resulted in the 15 and 30 min FDT treatments reaching ammonia effluent discharge standards sooner than the 60 min FDT. Total plant harvest increased with increasing FDT; therefore, 15 min FDT was used as the FDT in tidal treatments in the following experiments. The aerated CW (5.81 ± 0.07 mg/l) and tidal CW (5.67 ± 0.07 mg/l) treatments had higher DO concentrations than the unaerated CW treatment (3.76 ± 0.07 mg/l; p<0.05) in Experiment 2. This resulted in lower ammonia concentrations on day 5 in the aerated and tidal CWs compared with the unaerated treatment (p<0.05). The tidal CW (23.97 ± 2.57 kg) had a total harvest that was approximately four times higher than the unaerated CW (p<0.05), which had the highest frequency of chlorosis and plant mortality; and was unable to treat ammonia to discharge standards. In Experiment 3, the aerated and tidal CW were compared with municipal-water as water sources for aquaculture. There were no differences in fish growth (p > 0.05). However, there were differences in water quality; with the municipal treatment having the lowest pH, EC and nitrate concentration (p<0.05); but all water quality parameters remained in a range suitably for fish production. Due to the tidal CW having the highest plant harvest and lowest frequency of chlorosis and mortality; it was the most suitable CW technology to clean the brewery effluent, and to produce B. vulgaris and water that could be used downstream in aquaculture.
- Full Text:
- Date Issued: 2019
The morphological and molecular variation of southern African Nannocharax (Characiformes: Distichodontidae), and its taxonomic implications
- Authors: Smith, Timothy
- Date: 2019
- Subjects: Nannocharax -- Africa, Southern , Distichodontidae -- Africa, Southern , Freshwater fishes -- Africa, Southern , Nannocharax -- Genetics -- Africa, Southern , Distichodontidae -- Genetics -- Africa, Southern , Freshwater fishes -- Genetics -- Africa, Southern
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/69212 , vital:29446
- Description: Nannocharax is the most species rich genus in the family Distichodontidae, being currently represented by 41 species. The genus is widely distributed across much of sub-Saharan Africa, with a range extending from the Zambezi ichthyofaunal province in the south to the Nilo-Sudan ichthyofaunal province in the north. In southern Africa, the genus is currently represented by four species, Nannocharax dageti Jerep, Vari, & Vreven, 2014, N. machadoi (Poll, 1967), N. macropterus Pellegrin, 1926, and N. multifasciatus Boulenger, 1923. Each of these species exhibit considerable intraspecific pigmentation pattern variation across their respective distribution ranges, suggesting that the current taxonomy possibly underestimates the taxonomic diversity of Nannocharax species in southern Africa. Much pigmentation pattern variation within these southern African species has been observed by both collectors and scientists in the field, prompting an investigation into the extent of this morphological variation as well as what molecular variation may occur as well. The genus displays a high degree of morphological conservatisim, making it difficult to assign external morphological characters as diagnostic. To this end, this study was conducted to determine the extent of diversity of this genus in the region, employing an integrative approach with traditional morphological analysis techniques as well as sequencing the ‘barcoding gene’, cytochrome oxidase I, testing the hypothesis that there is a greater, hidden diversity of this genus in the region than currently recognised. This study aims to identify these potential lineages and accurately map their distributions. Phylogenetic analyses were performed using maximum parsimony, maximum likelihood, and Bayesian inference, using the mitochondrial cytochrome oxidase I gene region. Massive genetic divergence was detected between populations of taxa previously considered to be singular, widely distributed species. The three approaches of phylogenetic inference used in this study yielded trees of comparable overall topology, with the exception of the maximum parsimony tree which indicated additional lineages within the southern African N. multifasciatus group. These analyses revealed four deeply divergent (1.3 – 12.3%) lineages within southern African N. macropterus, as well as two deeply divergent (0.4-14.6%) populations from the Congo ichthyofaunal region, the lineages here named “N. macropterus Congo 1” and “N. macropterus Congo 2”. Within the southern African region, two deeply divergent (10.3%) lineages of N. macropterus were identified from the Okavango River system, identified as “N. macropterus Okavango 2” lineage restricted to the Cuito-Canavale tributary, and “N. macropterus Okavango 1” distributed throughout the remainder of the Okavango system. “N. macropterus Okavango 2” shares a closer relationship with the unique lineage from the Kwanza ichthyofaunal region, named N. macropterus “Kwanza”, which itself is deeply divergent from the N. macropterus “Okavango 1”, N. macropterus “Zambezi”, N. macropterus “Congo 1” and N. macropterus “Congo 2” lineages (3.1-14.4%). Principal component analyses (PCA) and discriminant function analyses (DFA) produced overlapping clusters for all identified lineages, with the exception of the N. macropterus “Kwanza” lineage, which in all analyses clustered away from the other lineages. Analysis of variance (ANOVA) and Kruskall-Wallis tests indicated significant differences in means between character traits between lineages, however, overlap in measurements and counts occurred in all instances except between the N. macropterus “Kwanza” and N. macropterus Congo lineages. However the N. macropterus “Kwanza” lineages could be distinguished from the other lineages by generally smaller fin lengths (dorsal fin 19.5%SL vs 20.0-22.1%SL in others; pectoral fin 16.5%SL vs 20.6-21.8%SL in others; pelvic fin 18.3%SL vs 21.3-22.4) and pigmentation pattern differences. The N. macropterus species group displayed extensive pigmentation pattern variation, to the extent that five pattern grades could be used to classify them. These pattern grades, while not specific to river systems, showed patterns similar to that which was seen in the molecular analyses and could be linked to lineages with only minor overlap between them. Three lineages of N. multifasciatus were identified, with two occurring in the southern African region, each corresponding to a river system, being the N. multifasciatus “Zambezi” and N. multifasciatus “Okavango” lineages. This species group displayed shallower divergence between lineages than did the N. macropterus group, at 2.5% genetic distance. Genetic analysis inferred a closer relationship between the N. multifasciatus “Zambezi” and N. multifasciatus “Congo” lineages than with the N. multifasciatus “Okavango” lineage. Morphological PCA and DFA analyses indicated morphological divergence of the N. multifasciatus “Congo” lineage, with generally larger proportional measurements than southern African specimens (body width 12.6%SL vs 9.5-9.7%SL; body depth 26.6%SL vs 21.6-21.9%SL; head width 12.0%SL vs 10.0-10.4%SL). PCA, DFA, and measurements show a near complete overlap between the N. multifasciatus “Okavango” and N. multifasciatus “Zambezi” lineages. Pigmentation pattern variation occurred within this group, but none that could be assigned to a particular lineage. The N. machadoi species group in southern Africa consists of five lineages: N. machadoi “Zambezi 1”, N. machadoi “Zambezi 2”, N. machadoi “Kafue 1”, N. machadoi “Kafue 2”, and N. machadoi “Okavango”. This group displayed shallower genetic divergence between lineages than the other southern African Nannocharax species groups (0.4-1.3%). This shallow genetic divergence is paralleled by near complete morphological overlap, with PCA and DFA producing overlapping clusters, and measurements, meristics, and pigmentation pattern metrics consisting of very similar values for the lineages. These results indicate that what is considered to be “N. macropterus” in southern Africa should not be named as such. The N. macropterus “Zambezi” and the N. macropterus “Okavango 1” lineages, are misidentifications of Nannocharax dageti. Other “N. macropterus” from the southern African region possesses fewer circumpeduncular scales than the true N. macropterus as described by Pellegrin (1926), and require taxonomic re-evaluation, each here being recognised as a unique lineage with species status, here named N. macropterus “Okavango 2” and N. macropterus “Kwanza”. In particular, N. macropterus “Kwanza” displays deep genetic divergence as well as morphological dissimilarity with the other southern African “N. macropterus” groups. Nannocharax fasciolaris and N. monardi are here placed as junior synonyms of N. multifasciatus, owing to vast overlaps in measurements and character counts of these species and N. multifasciatus, which is also known to occur within the same geographical distribution, as well as dubious arguments from the original publications in delineating these species from N. multifasciatus. Therefore, there is insufficient evidence indicating the presence of multiple species originating from the Okavango system, where it is here indicated that only a single lineage of banded, adipose fin-bearing Nannocharax occurs, namely N. multifasciatus “Okavango”.
- Full Text:
- Date Issued: 2019
- Authors: Smith, Timothy
- Date: 2019
- Subjects: Nannocharax -- Africa, Southern , Distichodontidae -- Africa, Southern , Freshwater fishes -- Africa, Southern , Nannocharax -- Genetics -- Africa, Southern , Distichodontidae -- Genetics -- Africa, Southern , Freshwater fishes -- Genetics -- Africa, Southern
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/69212 , vital:29446
- Description: Nannocharax is the most species rich genus in the family Distichodontidae, being currently represented by 41 species. The genus is widely distributed across much of sub-Saharan Africa, with a range extending from the Zambezi ichthyofaunal province in the south to the Nilo-Sudan ichthyofaunal province in the north. In southern Africa, the genus is currently represented by four species, Nannocharax dageti Jerep, Vari, & Vreven, 2014, N. machadoi (Poll, 1967), N. macropterus Pellegrin, 1926, and N. multifasciatus Boulenger, 1923. Each of these species exhibit considerable intraspecific pigmentation pattern variation across their respective distribution ranges, suggesting that the current taxonomy possibly underestimates the taxonomic diversity of Nannocharax species in southern Africa. Much pigmentation pattern variation within these southern African species has been observed by both collectors and scientists in the field, prompting an investigation into the extent of this morphological variation as well as what molecular variation may occur as well. The genus displays a high degree of morphological conservatisim, making it difficult to assign external morphological characters as diagnostic. To this end, this study was conducted to determine the extent of diversity of this genus in the region, employing an integrative approach with traditional morphological analysis techniques as well as sequencing the ‘barcoding gene’, cytochrome oxidase I, testing the hypothesis that there is a greater, hidden diversity of this genus in the region than currently recognised. This study aims to identify these potential lineages and accurately map their distributions. Phylogenetic analyses were performed using maximum parsimony, maximum likelihood, and Bayesian inference, using the mitochondrial cytochrome oxidase I gene region. Massive genetic divergence was detected between populations of taxa previously considered to be singular, widely distributed species. The three approaches of phylogenetic inference used in this study yielded trees of comparable overall topology, with the exception of the maximum parsimony tree which indicated additional lineages within the southern African N. multifasciatus group. These analyses revealed four deeply divergent (1.3 – 12.3%) lineages within southern African N. macropterus, as well as two deeply divergent (0.4-14.6%) populations from the Congo ichthyofaunal region, the lineages here named “N. macropterus Congo 1” and “N. macropterus Congo 2”. Within the southern African region, two deeply divergent (10.3%) lineages of N. macropterus were identified from the Okavango River system, identified as “N. macropterus Okavango 2” lineage restricted to the Cuito-Canavale tributary, and “N. macropterus Okavango 1” distributed throughout the remainder of the Okavango system. “N. macropterus Okavango 2” shares a closer relationship with the unique lineage from the Kwanza ichthyofaunal region, named N. macropterus “Kwanza”, which itself is deeply divergent from the N. macropterus “Okavango 1”, N. macropterus “Zambezi”, N. macropterus “Congo 1” and N. macropterus “Congo 2” lineages (3.1-14.4%). Principal component analyses (PCA) and discriminant function analyses (DFA) produced overlapping clusters for all identified lineages, with the exception of the N. macropterus “Kwanza” lineage, which in all analyses clustered away from the other lineages. Analysis of variance (ANOVA) and Kruskall-Wallis tests indicated significant differences in means between character traits between lineages, however, overlap in measurements and counts occurred in all instances except between the N. macropterus “Kwanza” and N. macropterus Congo lineages. However the N. macropterus “Kwanza” lineages could be distinguished from the other lineages by generally smaller fin lengths (dorsal fin 19.5%SL vs 20.0-22.1%SL in others; pectoral fin 16.5%SL vs 20.6-21.8%SL in others; pelvic fin 18.3%SL vs 21.3-22.4) and pigmentation pattern differences. The N. macropterus species group displayed extensive pigmentation pattern variation, to the extent that five pattern grades could be used to classify them. These pattern grades, while not specific to river systems, showed patterns similar to that which was seen in the molecular analyses and could be linked to lineages with only minor overlap between them. Three lineages of N. multifasciatus were identified, with two occurring in the southern African region, each corresponding to a river system, being the N. multifasciatus “Zambezi” and N. multifasciatus “Okavango” lineages. This species group displayed shallower divergence between lineages than did the N. macropterus group, at 2.5% genetic distance. Genetic analysis inferred a closer relationship between the N. multifasciatus “Zambezi” and N. multifasciatus “Congo” lineages than with the N. multifasciatus “Okavango” lineage. Morphological PCA and DFA analyses indicated morphological divergence of the N. multifasciatus “Congo” lineage, with generally larger proportional measurements than southern African specimens (body width 12.6%SL vs 9.5-9.7%SL; body depth 26.6%SL vs 21.6-21.9%SL; head width 12.0%SL vs 10.0-10.4%SL). PCA, DFA, and measurements show a near complete overlap between the N. multifasciatus “Okavango” and N. multifasciatus “Zambezi” lineages. Pigmentation pattern variation occurred within this group, but none that could be assigned to a particular lineage. The N. machadoi species group in southern Africa consists of five lineages: N. machadoi “Zambezi 1”, N. machadoi “Zambezi 2”, N. machadoi “Kafue 1”, N. machadoi “Kafue 2”, and N. machadoi “Okavango”. This group displayed shallower genetic divergence between lineages than the other southern African Nannocharax species groups (0.4-1.3%). This shallow genetic divergence is paralleled by near complete morphological overlap, with PCA and DFA producing overlapping clusters, and measurements, meristics, and pigmentation pattern metrics consisting of very similar values for the lineages. These results indicate that what is considered to be “N. macropterus” in southern Africa should not be named as such. The N. macropterus “Zambezi” and the N. macropterus “Okavango 1” lineages, are misidentifications of Nannocharax dageti. Other “N. macropterus” from the southern African region possesses fewer circumpeduncular scales than the true N. macropterus as described by Pellegrin (1926), and require taxonomic re-evaluation, each here being recognised as a unique lineage with species status, here named N. macropterus “Okavango 2” and N. macropterus “Kwanza”. In particular, N. macropterus “Kwanza” displays deep genetic divergence as well as morphological dissimilarity with the other southern African “N. macropterus” groups. Nannocharax fasciolaris and N. monardi are here placed as junior synonyms of N. multifasciatus, owing to vast overlaps in measurements and character counts of these species and N. multifasciatus, which is also known to occur within the same geographical distribution, as well as dubious arguments from the original publications in delineating these species from N. multifasciatus. Therefore, there is insufficient evidence indicating the presence of multiple species originating from the Okavango system, where it is here indicated that only a single lineage of banded, adipose fin-bearing Nannocharax occurs, namely N. multifasciatus “Okavango”.
- Full Text:
- Date Issued: 2019
The trophic and spatial ecology of a sympatric dasyatid community at a remote Atoll, Seychelles
- Authors: Elston, Chantel
- Date: 2019
- Subjects: Dasyatidae -- Seychelles -- Ecology , Rays (Fishes) -- Seychelles -- Ecology , Ecology -- Seychelles , Dasyatidae -- Seychelles -- Conservation , Pastinachus sephen , Urogymnus granulatus , Urogymnus asperrimus
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/95756 , vital:31196 , DOI https://doi.org/10.21504/10962/95756
- Description: Batoid populations are declining globally but the paucity of information makes management or conservation efforts difficult. Additionally, batoids are mesopredators and are hypothesised to play important ecological roles, but a comprehensive understanding of these roles is also limited. Therefore, information on batoid habitat use, foraging ecology, and resource partitioning is needed. St. Joseph Atoll is a relatively pristine ecosystem that hosts a sympatric dasyatid community (Pastinachus sephen, Urogymnus granulatus, and U. asperrimus). Passive acoustic telemetry identified high levels of long-term site affinity by both juvenile and adult dasyatids to St. Joseph Atoll. Dispersal from the atoll by larger juveniles was also evident. Juveniles displayed restricted horizontal movements in the atoll, but the extent of these movements differed seasonally. Stomach content and stable isotope analyses identified inter-specific prey partitioning (P. sephen juveniles were mollusc specialists and U. granulatus juveniles were crustacean specialists) and intra-specific prey partitioning. Juveniles were reliant upon a seagrass-based food web, whereas adults were reliant on phytoplankton-based food web. Adults fed at higher trophic levels compared to juveniles (mean of 4.6 and 3.4 respectively). Juvenile dasyatids preferentially selected the shallow reef at habitat of the atoll, where there was no evidence for inter-specific habitat partitioning (individuals co-occurred randomly with con-and hetero-specifics). Conversely, resident adults were more reliant on the deeper lagoon. Juveniles selected the reef at habitat likely because it provided refuge from predation and foraging opportunities. However, juveniles were also detected in the lagoon habitat and this appeared to be necessitated by physical factors as they were detected more frequently in the lagoon at low tides and when temperatures on the reef fats became too warm or too cold. All results together suggest that St. Joseph Atoll is a nursery area for these dasyatids. Juveniles may be limited by resources as prey was partitioned between species. However, top-down control by larger sharks was likely a significant influence on habitat selection, as was the physical effects of tide and temperature. Finally, St. Joseph Atoll is suitable for the designation of a Marine Protected Area, which would likely confer high conservation benefits to this dasyatid community.
- Full Text:
- Date Issued: 2019
- Authors: Elston, Chantel
- Date: 2019
- Subjects: Dasyatidae -- Seychelles -- Ecology , Rays (Fishes) -- Seychelles -- Ecology , Ecology -- Seychelles , Dasyatidae -- Seychelles -- Conservation , Pastinachus sephen , Urogymnus granulatus , Urogymnus asperrimus
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/95756 , vital:31196 , DOI https://doi.org/10.21504/10962/95756
- Description: Batoid populations are declining globally but the paucity of information makes management or conservation efforts difficult. Additionally, batoids are mesopredators and are hypothesised to play important ecological roles, but a comprehensive understanding of these roles is also limited. Therefore, information on batoid habitat use, foraging ecology, and resource partitioning is needed. St. Joseph Atoll is a relatively pristine ecosystem that hosts a sympatric dasyatid community (Pastinachus sephen, Urogymnus granulatus, and U. asperrimus). Passive acoustic telemetry identified high levels of long-term site affinity by both juvenile and adult dasyatids to St. Joseph Atoll. Dispersal from the atoll by larger juveniles was also evident. Juveniles displayed restricted horizontal movements in the atoll, but the extent of these movements differed seasonally. Stomach content and stable isotope analyses identified inter-specific prey partitioning (P. sephen juveniles were mollusc specialists and U. granulatus juveniles were crustacean specialists) and intra-specific prey partitioning. Juveniles were reliant upon a seagrass-based food web, whereas adults were reliant on phytoplankton-based food web. Adults fed at higher trophic levels compared to juveniles (mean of 4.6 and 3.4 respectively). Juvenile dasyatids preferentially selected the shallow reef at habitat of the atoll, where there was no evidence for inter-specific habitat partitioning (individuals co-occurred randomly with con-and hetero-specifics). Conversely, resident adults were more reliant on the deeper lagoon. Juveniles selected the reef at habitat likely because it provided refuge from predation and foraging opportunities. However, juveniles were also detected in the lagoon habitat and this appeared to be necessitated by physical factors as they were detected more frequently in the lagoon at low tides and when temperatures on the reef fats became too warm or too cold. All results together suggest that St. Joseph Atoll is a nursery area for these dasyatids. Juveniles may be limited by resources as prey was partitioned between species. However, top-down control by larger sharks was likely a significant influence on habitat selection, as was the physical effects of tide and temperature. Finally, St. Joseph Atoll is suitable for the designation of a Marine Protected Area, which would likely confer high conservation benefits to this dasyatid community.
- Full Text:
- Date Issued: 2019
The use of filter-feeding fish (Clarias gariepinus and Oreochromis mossambicus) to remove microalgae from brewery effluent treatment ponds
- Authors: Nombembe, Lwazi
- Date: 2019
- Subjects: Clarias gariepinus -- Food , Mozambique tilapia -- Food , Water -- Purification -- South Africa , Algae -- Biotechnology -- South Africa , Microalgae -- Biotechnology-- South Africa , Brewery waste -- South Africa , Fish culture -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/95745 , vital:31194
- Description: The removal of microalgae from high rate algal ponds (HRAP) in waste-water treatment systems remains a constraint to their use in effluent treatment systems. Conventional algae harvesting methods often have high energy demands, take up lots of space, are expensive to operate or are time consuming. The aim of the study was to determine if fish such as Clarias gariepinus and Oreochromis mossambicus, could be used to remove microalgae from waste-water treatment ponds (in the absence/presence of a flocculent in the former and in the absence or presence of pH moderation in the latter), and to investigate the subsequent influence of algae concentration on several water quality parameters. The age of Clarias gariepinus (3-12 months) had a positive relationship with the distance between gill rakers (98.27 to 163.34 μm; y=90.576+4.823*x: R²=0.549; F(1,18)=21.867; p<0.001) and these data suggested that these fish might be efficient at removing algae from HRAP effluent. However, this was not the case, even with flocculent application (but this result might have been confounded by very high pH readings, at which flocculation is less likely to occur). Oreochromis mossambicus removed some of this algae, but the pH was too high for tilapia culture. It was not possible to moderate the increase in pH by keeping tanks in the dark and thus preventing photosynthesis; but pH fluctuation in HRAP effluent could be moderated using CO2 sparging in an attempt to make the environment more hospitable for tilapia (the average pH that was moderated with CO2 was 8.43±0.06, whereas the unmoderated average was 10.65±0.06). However, pH moderation using CO2 sparging did not increase the rate at which algae were removed by O. mossambicus; rather, it compromised O2 concentration which dropped to 4.17±1.26 mg/l after five hours of CO2 sparging, whereas it increased to 20.50±1.41 mg/l in treatments with unadjusted pH over the same period. Fish can be used to remove algae from treated effluent, and Oreochromis mossambicus remains a recommended species. Future work needs to investigate moderating fluctuations in pH and O2 concentration to further facilitate this method of algae removal.
- Full Text:
- Date Issued: 2019
- Authors: Nombembe, Lwazi
- Date: 2019
- Subjects: Clarias gariepinus -- Food , Mozambique tilapia -- Food , Water -- Purification -- South Africa , Algae -- Biotechnology -- South Africa , Microalgae -- Biotechnology-- South Africa , Brewery waste -- South Africa , Fish culture -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/95745 , vital:31194
- Description: The removal of microalgae from high rate algal ponds (HRAP) in waste-water treatment systems remains a constraint to their use in effluent treatment systems. Conventional algae harvesting methods often have high energy demands, take up lots of space, are expensive to operate or are time consuming. The aim of the study was to determine if fish such as Clarias gariepinus and Oreochromis mossambicus, could be used to remove microalgae from waste-water treatment ponds (in the absence/presence of a flocculent in the former and in the absence or presence of pH moderation in the latter), and to investigate the subsequent influence of algae concentration on several water quality parameters. The age of Clarias gariepinus (3-12 months) had a positive relationship with the distance between gill rakers (98.27 to 163.34 μm; y=90.576+4.823*x: R²=0.549; F(1,18)=21.867; p<0.001) and these data suggested that these fish might be efficient at removing algae from HRAP effluent. However, this was not the case, even with flocculent application (but this result might have been confounded by very high pH readings, at which flocculation is less likely to occur). Oreochromis mossambicus removed some of this algae, but the pH was too high for tilapia culture. It was not possible to moderate the increase in pH by keeping tanks in the dark and thus preventing photosynthesis; but pH fluctuation in HRAP effluent could be moderated using CO2 sparging in an attempt to make the environment more hospitable for tilapia (the average pH that was moderated with CO2 was 8.43±0.06, whereas the unmoderated average was 10.65±0.06). However, pH moderation using CO2 sparging did not increase the rate at which algae were removed by O. mossambicus; rather, it compromised O2 concentration which dropped to 4.17±1.26 mg/l after five hours of CO2 sparging, whereas it increased to 20.50±1.41 mg/l in treatments with unadjusted pH over the same period. Fish can be used to remove algae from treated effluent, and Oreochromis mossambicus remains a recommended species. Future work needs to investigate moderating fluctuations in pH and O2 concentration to further facilitate this method of algae removal.
- Full Text:
- Date Issued: 2019
Towards a norm of compliance in recreational fisheries
- Authors: Bova, Christopher S
- Date: 2019
- Subjects: Fishing -- Management -- South Africa , Fishery law and legislation -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/95909 , vital:31213
- Description: The activity of fishing can be traced back to prehistoric times. However, only in the last century has there been a focus on the management of fisheries. Fishery regulations are tools used by resource managers with the aim of protecting the long-term sustainability of fishery resources. Although there is an overwhelming amount of evidence demonstrating the decline of fisheries, non-compliance with these regulations by fishers continues to manifest, which can exacerbate the negative ecological impacts of fisheries. Popular methods towards the measurement of noncompliance in fisheries derived from previous human dimensions literature may be flawed. Theories on improving compliance behaviour have typically relied on theory, which has at times proved paradoxical. Addressing the issues of non-compliance within a fishery of interest requires measuring the levels of non-compliance within the fishery and determining the relevant sociopsychological drivers behind the non-compliant behaviour. The data collection methods used during these assessments are limited in human dimensions research and are often case and context specific, requiring researchers to identify which approach is most practical for the specific fishery of interest. By identifying relevant behavioural drivers of non-compliance, a more effective approach aimed at improving compliance can be tailored. The recreational marine-based shore fishery (MBSF) in South Africa is not impervious to noncomplaint behaviour. In fact, it has been estimated to have relatively high rates of non-compliance. This high level of non-compliance makes the South African MBSF a unique and optimal context in which to undertake research that aims to formulate a framework towards compliance assessments and that develops a suitable approach for improving compliance rates. Using surveys to obtain compliance data can provide a range of details about violators, however they are susceptible to social desirability bias (SDB). Choosing the best method for controlling SDB required an assessment of existing methods for doing so. In this first part of the study, only fishers who were covertly observed breaking the rules were surveyed, using one of three methods for reducing SDB, to ground-truth the responses. Ground-truthing was done to determine which method would be most effective for a large-scale study within the same fishery. Of the methods used, which include the direct questioning method (DQM), the random response technique (RRT) and the ballot box method (BBM), all contained some level of SDB. However, the BBM provided a significantly higher level of response accuracy (79.6% ± 11.9) than the DQM (46.5% ± 14.9) and the RRT (44.3% ± 12.5). Random-stratified roving creel compliance surveys that employed the BBM were then undertaken at various locations along South Africa’s coastline to estimate current rates of non-compliance, and the face-to-face results were compared to results from an identical online survey to determine the suitability of online surveys as a replacement. The results indicated that online surveys only represent a subgroup of the fisher population within the MBSF, suggesting that face-to-face survey methods are required to obtain a more comprehensive sample and a more robust estimate of noncompliance. The results, based on 453 face-to-face surveys, showed a high level of overall self-reported noncompliance (48.3%) within the fishery. Responses to Likert scale survey questions on various aspects of the fishery, including angler motivations for fishing, were then modelled to test the relationship between the anglers’ responses and their compliance behaviour. In the South African MBSF context, the most significant behavioural drivers behind non-compliance related to normative concepts. Specifically, the poor perceptions of management and value-based legitimacy as well as low levels of moral obligation to adhere to the regulations appeared to contribute most to the observed non-compliant behaviour. Angler motivations for fishing also played a significant role in determining the compliance behaviour of anglers, with those fishing for food being more likely to violate regulations. In most countries, regardless of economic context, interventions to improve recreational fishery compliance have been developed around the instrumental concept. However, these findings suggest that for recreational fisheries, managers would do well to evaluate the impact of normative concepts on compliance and to design interventions aimed at addressing these. In the case of the South African MBSF, interventions that address angler perceptions of legitimacy and aim to correct misperceptions about social norms of compliance may provide a more practical and cost- effective method for improving poor compliance behaviour.
- Full Text:
- Date Issued: 2019
- Authors: Bova, Christopher S
- Date: 2019
- Subjects: Fishing -- Management -- South Africa , Fishery law and legislation -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/95909 , vital:31213
- Description: The activity of fishing can be traced back to prehistoric times. However, only in the last century has there been a focus on the management of fisheries. Fishery regulations are tools used by resource managers with the aim of protecting the long-term sustainability of fishery resources. Although there is an overwhelming amount of evidence demonstrating the decline of fisheries, non-compliance with these regulations by fishers continues to manifest, which can exacerbate the negative ecological impacts of fisheries. Popular methods towards the measurement of noncompliance in fisheries derived from previous human dimensions literature may be flawed. Theories on improving compliance behaviour have typically relied on theory, which has at times proved paradoxical. Addressing the issues of non-compliance within a fishery of interest requires measuring the levels of non-compliance within the fishery and determining the relevant sociopsychological drivers behind the non-compliant behaviour. The data collection methods used during these assessments are limited in human dimensions research and are often case and context specific, requiring researchers to identify which approach is most practical for the specific fishery of interest. By identifying relevant behavioural drivers of non-compliance, a more effective approach aimed at improving compliance can be tailored. The recreational marine-based shore fishery (MBSF) in South Africa is not impervious to noncomplaint behaviour. In fact, it has been estimated to have relatively high rates of non-compliance. This high level of non-compliance makes the South African MBSF a unique and optimal context in which to undertake research that aims to formulate a framework towards compliance assessments and that develops a suitable approach for improving compliance rates. Using surveys to obtain compliance data can provide a range of details about violators, however they are susceptible to social desirability bias (SDB). Choosing the best method for controlling SDB required an assessment of existing methods for doing so. In this first part of the study, only fishers who were covertly observed breaking the rules were surveyed, using one of three methods for reducing SDB, to ground-truth the responses. Ground-truthing was done to determine which method would be most effective for a large-scale study within the same fishery. Of the methods used, which include the direct questioning method (DQM), the random response technique (RRT) and the ballot box method (BBM), all contained some level of SDB. However, the BBM provided a significantly higher level of response accuracy (79.6% ± 11.9) than the DQM (46.5% ± 14.9) and the RRT (44.3% ± 12.5). Random-stratified roving creel compliance surveys that employed the BBM were then undertaken at various locations along South Africa’s coastline to estimate current rates of non-compliance, and the face-to-face results were compared to results from an identical online survey to determine the suitability of online surveys as a replacement. The results indicated that online surveys only represent a subgroup of the fisher population within the MBSF, suggesting that face-to-face survey methods are required to obtain a more comprehensive sample and a more robust estimate of noncompliance. The results, based on 453 face-to-face surveys, showed a high level of overall self-reported noncompliance (48.3%) within the fishery. Responses to Likert scale survey questions on various aspects of the fishery, including angler motivations for fishing, were then modelled to test the relationship between the anglers’ responses and their compliance behaviour. In the South African MBSF context, the most significant behavioural drivers behind non-compliance related to normative concepts. Specifically, the poor perceptions of management and value-based legitimacy as well as low levels of moral obligation to adhere to the regulations appeared to contribute most to the observed non-compliant behaviour. Angler motivations for fishing also played a significant role in determining the compliance behaviour of anglers, with those fishing for food being more likely to violate regulations. In most countries, regardless of economic context, interventions to improve recreational fishery compliance have been developed around the instrumental concept. However, these findings suggest that for recreational fisheries, managers would do well to evaluate the impact of normative concepts on compliance and to design interventions aimed at addressing these. In the case of the South African MBSF, interventions that address angler perceptions of legitimacy and aim to correct misperceptions about social norms of compliance may provide a more practical and cost- effective method for improving poor compliance behaviour.
- Full Text:
- Date Issued: 2019
Towards defining the tipping point of tolerance to CO2-induced ocean acidification for the growth, development and metabolism of larval dusky kob Argyrosomus japonicus (Pisces: Sciaenidae)
- Authors: Mpopetsi, Pule Peter
- Date: 2019
- Subjects: Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Larvae , Argyrosomus -- Larvae -- Effect of water acidification on , Argyrosomus japonicus -- Larvae -- Nutrition , Argyrosomus -- Larvae -- Nutrition , Ocean acidification
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/71602 , vital:29924
- Description: Increased CO2 production and the consequent ocean acidification (OA) have been identified as one of the greatest threats to both calcifying and non-calcifying marine organisms. Traditionally, marine fishes, as non-calcifying organisms, were considered to have a higher tolerance to near-future OA conditions owing to their well-developed ion regulatory mechanisms. However, recent studies provide evidence to suggest that they may not be as resilient to near-future OA conditions as previously thought. In addition, earlier life stages of marine fishes are thought to be less tolerant than juveniles and adults of the same species as they lack well-developed ion regulatory mechanisms for maintaining homeostasis. This study follows up on previous studies examining the effects of near-future OA on larval Argyrosomus japonicus, an estuarine-dependent marine fish species, in order to identify the tipping point of tolerance for the larvae of this species. These previous studies showed that elevated pCO2, predicted for the year 2100, had negative effects on growth, development and metabolism and ultimately, survival of larval A. japonicus from post-flexion stage. Larval A. japonicus in the present study were reared from egg up to 22 DAH (days after hatching) under three treatments. The three treatments, (pCO2 353 μatm; pH 8.03), (pCO2 451 μatm; pH 7.93) and (pCO2 602 μatm; pH 7.83) corresponded to levels predicted to occur in year 2050, 2068 and 2090 respectively under the Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathways (IPCC RCP) 8.5 model. Size-at-hatch, growth, development and metabolic responses (standard and active metabolic rates and metabolic scope) were assessed and compared between the three treatments throughout the rearing period. Five earlier larval life stages (hatchling – flexion/post-flexion) were identified by the end of the experiment. There were no significant differences in size-at-hatch (P > 0.05), development or the active metabolic (P > 0.05) or metabolic scope (P > 0.05) of fish in the three treatments throughout the study. However, the standard metabolic rate was significantly higher in the year 2068 treatment but only at the flexion/post-flexion stage which could be attributed to differences in developmental rates (including the development of the gills) between the 2068 and the other two treatments. Overall, the metabolic scope was narrowest in the 2090 treatment, but varied according to life stage. Although not significantly different, metabolic scope in the 2090 treatment was noticeably lower at the flexion stage compared to the other two treatments, and the development appeared slower, suggesting that this could be the stage most prone to OA. The study concluded that, in isolation, OA levels predicted to occur between 2050 and 2090 will not negatively affect size-at-hatch, growth, development, and metabolic responses of larval A. japonicus up to 22 DAH (flexion/post-flexion stage). Taken together with the previous studies of the same species, the tipping point of tolerance (where negative impacts will begin) in larvae of the species appears to be between the years 2090 and 2100.
- Full Text:
- Date Issued: 2019
- Authors: Mpopetsi, Pule Peter
- Date: 2019
- Subjects: Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Larvae , Argyrosomus -- Larvae -- Effect of water acidification on , Argyrosomus japonicus -- Larvae -- Nutrition , Argyrosomus -- Larvae -- Nutrition , Ocean acidification
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/71602 , vital:29924
- Description: Increased CO2 production and the consequent ocean acidification (OA) have been identified as one of the greatest threats to both calcifying and non-calcifying marine organisms. Traditionally, marine fishes, as non-calcifying organisms, were considered to have a higher tolerance to near-future OA conditions owing to their well-developed ion regulatory mechanisms. However, recent studies provide evidence to suggest that they may not be as resilient to near-future OA conditions as previously thought. In addition, earlier life stages of marine fishes are thought to be less tolerant than juveniles and adults of the same species as they lack well-developed ion regulatory mechanisms for maintaining homeostasis. This study follows up on previous studies examining the effects of near-future OA on larval Argyrosomus japonicus, an estuarine-dependent marine fish species, in order to identify the tipping point of tolerance for the larvae of this species. These previous studies showed that elevated pCO2, predicted for the year 2100, had negative effects on growth, development and metabolism and ultimately, survival of larval A. japonicus from post-flexion stage. Larval A. japonicus in the present study were reared from egg up to 22 DAH (days after hatching) under three treatments. The three treatments, (pCO2 353 μatm; pH 8.03), (pCO2 451 μatm; pH 7.93) and (pCO2 602 μatm; pH 7.83) corresponded to levels predicted to occur in year 2050, 2068 and 2090 respectively under the Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathways (IPCC RCP) 8.5 model. Size-at-hatch, growth, development and metabolic responses (standard and active metabolic rates and metabolic scope) were assessed and compared between the three treatments throughout the rearing period. Five earlier larval life stages (hatchling – flexion/post-flexion) were identified by the end of the experiment. There were no significant differences in size-at-hatch (P > 0.05), development or the active metabolic (P > 0.05) or metabolic scope (P > 0.05) of fish in the three treatments throughout the study. However, the standard metabolic rate was significantly higher in the year 2068 treatment but only at the flexion/post-flexion stage which could be attributed to differences in developmental rates (including the development of the gills) between the 2068 and the other two treatments. Overall, the metabolic scope was narrowest in the 2090 treatment, but varied according to life stage. Although not significantly different, metabolic scope in the 2090 treatment was noticeably lower at the flexion stage compared to the other two treatments, and the development appeared slower, suggesting that this could be the stage most prone to OA. The study concluded that, in isolation, OA levels predicted to occur between 2050 and 2090 will not negatively affect size-at-hatch, growth, development, and metabolic responses of larval A. japonicus up to 22 DAH (flexion/post-flexion stage). Taken together with the previous studies of the same species, the tipping point of tolerance (where negative impacts will begin) in larvae of the species appears to be between the years 2090 and 2100.
- Full Text:
- Date Issued: 2019
Using a multi-method approach to understand the movement patterns and the associated environmental correlates of an iconic West African recreational fish
- Authors: Winkler, Alexander Claus
- Date: 2019
- Subjects: Carangidae fishing , Carangidae -- Migration , Carangidae -- Namibia , Carangidae -- Angola , Fish tagging , Carangidae -- Benguela Current , Underwater acoustic telemetry , Ocean temperature -- Physiological effect , Fishes -- Effect of temperature on
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/76530 , vital:30597
- Description: The leerfish (Lichia amia), is a large, primarily coastal recreational fish species with a distribution extending from Portugal down the west coast of African to southern Mozambique. Owing to its large size (30 kg), strong fighting abilities and habit of taking surface artificial lures, this species has taken on an iconic stature among shore-based recreational anglers. Its reputation has made it an important angling tourism species that makes an important contribution to the economy of developing countries. For example, the species brought US$243 per harvested kilogramme into the local southern Angola economy. Despite its high value, little is known about its movement patterns in the northern Benguela coastal region, a region which includes southern Angola and northern Namibia. While much is known about the migratory patterns of the South African stock of L. amia, recent molecular studies have shown that the northern Benguela stock of L. amia has been isolated from the South African population for at least two million years, a consequence of the development of the cold Lüderitz upwelling cell in southern Namibia. Although the global population of L. amia is considered a single species, prominent biogeographic barriers within its distribution and subtle morphological differences between specimens captured within its tropical versus warm-temperate distribution suggest otherwise. A multi-method approach incorporating passive acoustic telemetry (PAT), recreational catch-per-unit-effort (CPUE) and conventional tagging (CT) in southern Angola, as well as recreational fisher-ecological knowledge (FEK) from Namibia, was used to investigate the large-scale movement patterns of L. amia within the northern Benguela coastal region. While each method had its own associated limitations, the combination provided a holistic picture of the population's seasonal migratory patterns. Furthermore, PAT successfully identified partial migration with 25% vs 75% of monitored fish exhibiting resident (movements < 100 km) or migratory (movements > 100 km) behaviour, respectively. Further behavioural diversity was observed with ‘resident’, ‘roaming’ and ‘embayment’ contingents identified based on varying levels of affinity to certain habitats. The presence of both resident and migratory individuals within the northernmost study during June and July, combined with available biological information, suggested that area-specific spawning may take place. While PAT, CPUE and CT largely aligned in determining area specific high-area use, results from network analyses and mixed effects models conducted on the PAT data supported the spawning hypothesis, with anomalous behaviour around specific receivers during the spawning season. All fish, regardless of behavioural contingent, displayed similar movement behaviour during the spawning season and this was driven by factors generally associated with reproduction, such as lunar illumination. Interestingly, these drivers were different from those that determined the area specific use of individuals outside of the spawning season. The environmental drivers of longshore migration into the northern study site were identified as a decline in water temperature and shorter day lengths. The results of this study highlight the importance of using a multi-method approach in determining migratory movement behaviour, area specific area use, and stock structure of key fisheries species. The identification of different behavioural contingents highlights the importance of acknowledging individual variation in movement and habitat-use patterns. This is particularly relevant as future climate change and spatiotemporal variation in fishing effort may artificially skew natural selection processes to favour certain behavioural groups. This study also highlighted the importance of scientists forming relationships with resource-users, such as recreational angling lodges in areas where limited research has been conducted. This is particularly relevant within the West African context where little is known about many of the fish species that are being increasingly targeted by tourism angling ventures.
- Full Text:
- Date Issued: 2019
- Authors: Winkler, Alexander Claus
- Date: 2019
- Subjects: Carangidae fishing , Carangidae -- Migration , Carangidae -- Namibia , Carangidae -- Angola , Fish tagging , Carangidae -- Benguela Current , Underwater acoustic telemetry , Ocean temperature -- Physiological effect , Fishes -- Effect of temperature on
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/76530 , vital:30597
- Description: The leerfish (Lichia amia), is a large, primarily coastal recreational fish species with a distribution extending from Portugal down the west coast of African to southern Mozambique. Owing to its large size (30 kg), strong fighting abilities and habit of taking surface artificial lures, this species has taken on an iconic stature among shore-based recreational anglers. Its reputation has made it an important angling tourism species that makes an important contribution to the economy of developing countries. For example, the species brought US$243 per harvested kilogramme into the local southern Angola economy. Despite its high value, little is known about its movement patterns in the northern Benguela coastal region, a region which includes southern Angola and northern Namibia. While much is known about the migratory patterns of the South African stock of L. amia, recent molecular studies have shown that the northern Benguela stock of L. amia has been isolated from the South African population for at least two million years, a consequence of the development of the cold Lüderitz upwelling cell in southern Namibia. Although the global population of L. amia is considered a single species, prominent biogeographic barriers within its distribution and subtle morphological differences between specimens captured within its tropical versus warm-temperate distribution suggest otherwise. A multi-method approach incorporating passive acoustic telemetry (PAT), recreational catch-per-unit-effort (CPUE) and conventional tagging (CT) in southern Angola, as well as recreational fisher-ecological knowledge (FEK) from Namibia, was used to investigate the large-scale movement patterns of L. amia within the northern Benguela coastal region. While each method had its own associated limitations, the combination provided a holistic picture of the population's seasonal migratory patterns. Furthermore, PAT successfully identified partial migration with 25% vs 75% of monitored fish exhibiting resident (movements < 100 km) or migratory (movements > 100 km) behaviour, respectively. Further behavioural diversity was observed with ‘resident’, ‘roaming’ and ‘embayment’ contingents identified based on varying levels of affinity to certain habitats. The presence of both resident and migratory individuals within the northernmost study during June and July, combined with available biological information, suggested that area-specific spawning may take place. While PAT, CPUE and CT largely aligned in determining area specific high-area use, results from network analyses and mixed effects models conducted on the PAT data supported the spawning hypothesis, with anomalous behaviour around specific receivers during the spawning season. All fish, regardless of behavioural contingent, displayed similar movement behaviour during the spawning season and this was driven by factors generally associated with reproduction, such as lunar illumination. Interestingly, these drivers were different from those that determined the area specific use of individuals outside of the spawning season. The environmental drivers of longshore migration into the northern study site were identified as a decline in water temperature and shorter day lengths. The results of this study highlight the importance of using a multi-method approach in determining migratory movement behaviour, area specific area use, and stock structure of key fisheries species. The identification of different behavioural contingents highlights the importance of acknowledging individual variation in movement and habitat-use patterns. This is particularly relevant as future climate change and spatiotemporal variation in fishing effort may artificially skew natural selection processes to favour certain behavioural groups. This study also highlighted the importance of scientists forming relationships with resource-users, such as recreational angling lodges in areas where limited research has been conducted. This is particularly relevant within the West African context where little is known about many of the fish species that are being increasingly targeted by tourism angling ventures.
- Full Text:
- Date Issued: 2019
Aspects of the nutritional physiology of the perlemoen Haliotis midae (L.) and red abalone H. rufescens (Swainson)
- Authors: Kemp, Justin Oliver Gordon
- Date: 2018
- Subjects: Haliotis midae , Haliotis midae fisheries , Red abalone , Haliotis midae -- Feeding and feeds , Red abalone -- Feeding and feeds , Haliotis midae -- Nutrition -- Requirements , Red abalone -- Nutrition -- Requirements , Haliotis midae -- Metabolism , Red abalone -- Metabolism , Haliotis midae -- Physiology , Red abalone -- Physiology , Stable isotopes , Algae as feed
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/62314 , vital:28154
- Description: The source of abalone for human consumption has shown a dramatic shift away from wild-capture fisheries in the last 30 years, with over 90% of global production now coming from aquaculture. Farmers initially relied on the natural food of abalone (macroalgae) as a culture feed, though in regions where macroalgae availability was limiting, the need to develop formulated feeds was evident. Extensive research effort has led to the development of a number of formulated feed products currently employed in the industry. These feeds, however, differ markedly from the mixed macroalgal diets that abalone have evolved to utilise, particularly in terms of protein content and carbohydrate structure. The degree to which the nutritional physiology of abalone responds to these novel formulated diets, with and without macroalgal supplementation, was investigated in the current study. A multifaceted approach, combining growth trials, stable isotope nutrient tracers and metabolic experiments, was employed to gain insight into the post-absorption dynamics and utilisation of dietary nutrients under varying dietary regimes of fresh macroalgae and formulated feed. Growth trials conducted with both Haliotis rufescens and H. midae showed significantly higher growth and protein utilisation efficiency for abalone fed macroalgal diets compared to formulated feeds. Furthermore, when formulated feeds were supplemented with macroalgae to form combination diets, growth and the utilization of protein was improved compared to the formulated-feed-only diet. The poor utilisation of protein by H. midae fed the formulated feed could be traced, using a method combining stable isotope bio-markers with a Bayesian mixing model (SIAR), to the low incorporation of the fishmeal component of protein in the diet. The marked postprandial drop in the O:N ratio on abalone fed formulated feeds indicate that the protein was being diverted into catabolic metabolic pathways. The metabolic cost of digestion, termed specific dynamic action (SDA), was negated as a factor in the improved growth of abalone fed macroalgal diets, with the SDA coefficient 2.1 times that observed for formulated feed. Furthermore, the postprandial haemolymph glucose concentration (HGC) in H. midae was elevated when fed formulated feed compared to macroalgae. The high levels of circulating glucose are likely a result of the structure the carbohydrate source in formulated feeds and stimulate the deposition of glycogen through the allosteric control of glycogen synthase. Formulated feeds produced higher cooked meat yields in canning simulation trials, suggesting that muscle glycogen content may indirectly play a role in increasing canning yields through the displacement of collagen. The results of these empirical studies are synthesised under key themes, discussed within the context of their potential commercial relevance and future research directions are highlighted.
- Full Text:
- Date Issued: 2018
- Authors: Kemp, Justin Oliver Gordon
- Date: 2018
- Subjects: Haliotis midae , Haliotis midae fisheries , Red abalone , Haliotis midae -- Feeding and feeds , Red abalone -- Feeding and feeds , Haliotis midae -- Nutrition -- Requirements , Red abalone -- Nutrition -- Requirements , Haliotis midae -- Metabolism , Red abalone -- Metabolism , Haliotis midae -- Physiology , Red abalone -- Physiology , Stable isotopes , Algae as feed
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/62314 , vital:28154
- Description: The source of abalone for human consumption has shown a dramatic shift away from wild-capture fisheries in the last 30 years, with over 90% of global production now coming from aquaculture. Farmers initially relied on the natural food of abalone (macroalgae) as a culture feed, though in regions where macroalgae availability was limiting, the need to develop formulated feeds was evident. Extensive research effort has led to the development of a number of formulated feed products currently employed in the industry. These feeds, however, differ markedly from the mixed macroalgal diets that abalone have evolved to utilise, particularly in terms of protein content and carbohydrate structure. The degree to which the nutritional physiology of abalone responds to these novel formulated diets, with and without macroalgal supplementation, was investigated in the current study. A multifaceted approach, combining growth trials, stable isotope nutrient tracers and metabolic experiments, was employed to gain insight into the post-absorption dynamics and utilisation of dietary nutrients under varying dietary regimes of fresh macroalgae and formulated feed. Growth trials conducted with both Haliotis rufescens and H. midae showed significantly higher growth and protein utilisation efficiency for abalone fed macroalgal diets compared to formulated feeds. Furthermore, when formulated feeds were supplemented with macroalgae to form combination diets, growth and the utilization of protein was improved compared to the formulated-feed-only diet. The poor utilisation of protein by H. midae fed the formulated feed could be traced, using a method combining stable isotope bio-markers with a Bayesian mixing model (SIAR), to the low incorporation of the fishmeal component of protein in the diet. The marked postprandial drop in the O:N ratio on abalone fed formulated feeds indicate that the protein was being diverted into catabolic metabolic pathways. The metabolic cost of digestion, termed specific dynamic action (SDA), was negated as a factor in the improved growth of abalone fed macroalgal diets, with the SDA coefficient 2.1 times that observed for formulated feed. Furthermore, the postprandial haemolymph glucose concentration (HGC) in H. midae was elevated when fed formulated feed compared to macroalgae. The high levels of circulating glucose are likely a result of the structure the carbohydrate source in formulated feeds and stimulate the deposition of glycogen through the allosteric control of glycogen synthase. Formulated feeds produced higher cooked meat yields in canning simulation trials, suggesting that muscle glycogen content may indirectly play a role in increasing canning yields through the displacement of collagen. The results of these empirical studies are synthesised under key themes, discussed within the context of their potential commercial relevance and future research directions are highlighted.
- Full Text:
- Date Issued: 2018
Effects of CO2-induced ocean acidification on the early development, growth, survival and skeletogenesis of the estuarine-dependant sciaenid Argyrosomus japonicus
- Authors: Erasmus, Bernard
- Date: 2018
- Subjects: Argyrosomus , Argyrosomus -- Growth , Argyrosomus -- Mortality , Argyrosomus -- Ecology , Argyrosomus -- Physiology , Ocean acidification , Marine ecology -- South Africa , Carbon dioxide -- Physiological effect
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60585 , vital:27799
- Description: Although it is increasingly accepted that ocean acidification poses a considerable threat to marine organisms, little is known about the likely response of fishes to this phenomenon. While initial research concluded that adult fishes may be tolerant to changes predicted in the next 300 years, the response of early life stages to end-of-century CO2 levels (~ 1100 µatm according to the IPCC RCP 8.5) remains unclear. To date, literature on the early growth and survival of fishes has yielded conflicting results, suggesting that vulnerability may be species dependant. The paucity of ocean acidification research on fishes is particularly evident when one considers larval skeletogenesis, with no robust studies on its impacts on bone and cartilage development. This study addresses the early life embryogenesis, hatching success, growth, skeletogenesis and survival of an estuarine-dependant species. Dusky kob (Argyrosomus japonicus) were reared in a control (pCO2 = 327.50 ± 80.07 qatm at pH 8.15), intermediate (pCO2 477.40 ± 59.46 qatm at pH 8.03) and high pCO2 treatment (pCO2 910.20 ± 136.45 qatm at pH 7.78) from egg to 29 days post-hatch (dph). Sixty individuals from each treatment were sacrificed at the egg stage and at 2, 6, 13, 18, 21 and 26 dph, measured and stained using an acid-free double- staining solution to prevent the deterioration of calcified matrices in fragile larval skeletons. The proportion of bone and cartilage was quantified at each stage using a novel pixel-counting method. Growth and skeletal development were identical between treatments until the onset of metamorphosis (21 dph). However, from the metamorphosis stage, the growth and skeletal development rate was significantly faster in the intermediate treatment and significantly slower in the high treatment when compared to the control treatment. By 26 dph, A. japonicus reared in high pCO2 were, on average, 47.2% smaller than the control treatment, and the relative proportion of bone in the body was 45.3% lower in the high pCO2 treatment when compared with the control. In addition, none of the fish in the high pCO2 treatment survived after 26 dph. It appears that the combination of the increased energy requirements during metamorphosis and the increased energy cost associated with acid-base regulation may account for reduced growth, skeletogenesis and poor survival in high pCO2. Regardless of the driver, the results of this study suggest that the pCO2 levels predicted for the end of the century may have negative effects on the growth, skeletal development, and survival during metamorphosis.
- Full Text:
- Date Issued: 2018
- Authors: Erasmus, Bernard
- Date: 2018
- Subjects: Argyrosomus , Argyrosomus -- Growth , Argyrosomus -- Mortality , Argyrosomus -- Ecology , Argyrosomus -- Physiology , Ocean acidification , Marine ecology -- South Africa , Carbon dioxide -- Physiological effect
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60585 , vital:27799
- Description: Although it is increasingly accepted that ocean acidification poses a considerable threat to marine organisms, little is known about the likely response of fishes to this phenomenon. While initial research concluded that adult fishes may be tolerant to changes predicted in the next 300 years, the response of early life stages to end-of-century CO2 levels (~ 1100 µatm according to the IPCC RCP 8.5) remains unclear. To date, literature on the early growth and survival of fishes has yielded conflicting results, suggesting that vulnerability may be species dependant. The paucity of ocean acidification research on fishes is particularly evident when one considers larval skeletogenesis, with no robust studies on its impacts on bone and cartilage development. This study addresses the early life embryogenesis, hatching success, growth, skeletogenesis and survival of an estuarine-dependant species. Dusky kob (Argyrosomus japonicus) were reared in a control (pCO2 = 327.50 ± 80.07 qatm at pH 8.15), intermediate (pCO2 477.40 ± 59.46 qatm at pH 8.03) and high pCO2 treatment (pCO2 910.20 ± 136.45 qatm at pH 7.78) from egg to 29 days post-hatch (dph). Sixty individuals from each treatment were sacrificed at the egg stage and at 2, 6, 13, 18, 21 and 26 dph, measured and stained using an acid-free double- staining solution to prevent the deterioration of calcified matrices in fragile larval skeletons. The proportion of bone and cartilage was quantified at each stage using a novel pixel-counting method. Growth and skeletal development were identical between treatments until the onset of metamorphosis (21 dph). However, from the metamorphosis stage, the growth and skeletal development rate was significantly faster in the intermediate treatment and significantly slower in the high treatment when compared to the control treatment. By 26 dph, A. japonicus reared in high pCO2 were, on average, 47.2% smaller than the control treatment, and the relative proportion of bone in the body was 45.3% lower in the high pCO2 treatment when compared with the control. In addition, none of the fish in the high pCO2 treatment survived after 26 dph. It appears that the combination of the increased energy requirements during metamorphosis and the increased energy cost associated with acid-base regulation may account for reduced growth, skeletogenesis and poor survival in high pCO2. Regardless of the driver, the results of this study suggest that the pCO2 levels predicted for the end of the century may have negative effects on the growth, skeletal development, and survival during metamorphosis.
- Full Text:
- Date Issued: 2018
Factors influencing estuarine and coastal connectivity of an estuarine-dependent fishery species, Pomadasys commersonnii (Haemulidae)
- Authors: Dames, Michael Henri
- Date: 2018
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62307 , vital:28153
- Description: Expected release date-April 2019
- Full Text:
- Date Issued: 2018
- Authors: Dames, Michael Henri
- Date: 2018
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62307 , vital:28153
- Description: Expected release date-April 2019
- Full Text:
- Date Issued: 2018
Morphological and genetic variation of Gymnothorax undulatus (Anguilliformes: Muraenidae) in the Western Indian Ocean
- Authors: Sithole, Yonela
- Date: 2018
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63722 , vital:28476
- Description: Expected release date-April 2019
- Full Text:
- Date Issued: 2018
- Authors: Sithole, Yonela
- Date: 2018
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63722 , vital:28476
- Description: Expected release date-April 2019
- Full Text:
- Date Issued: 2018