Identification and documentation of ethnobiological methods used by rural farmers to control stalk borers on maize in the Eastern Cape Province of South Africa
- Authors: Skenjana, Nolitha Leonora
- Date: 2015
- Subjects: Ethnobotany , Stem borers , Biological pest control agents -- South Africa , Corn -- Diseases and pests -- South Africa
- Language: English
- Type: Thesis , Masters , MSc (Ethnobotany)
- Identifier: vital:11312 , http://hdl.handle.net/10353/d1019852 , Ethnobotany , Stem borers , Biological pest control agents -- South Africa , Corn -- Diseases and pests -- South Africa
- Description: Maize contributes substantially to food security in the Eastern Cape province of South Africa. It is a staple food to many of the province’s rural and urban inhabitants. Insect pests are one of the factors that hamper its productivity and as a result, deprive farmers of good yields. The adverse effects of insecticides and the high cost associated with them and the cost of transgenic seeds are some of the challenges faced by small-scale farmers in rural areas. Alternative control methods which include the use of indigenous techniques to control pests are now sought. A study to identify and document ethnobiological means used by rural farmers to manage insect pests of maize was conducted in the rural areas of the Eastern Cape Province. A total of 217 participants were interviewed on the matter, using semi-structured but detailed questionnaires. Rural farmers due to their linkage to agriculture activities and the fact that they are considered as custodians of agricultural indigenous knowledge were selected as respondents. Only maize producing and IsiXhosa speaking people were chosen to contribute. Main focus was on the demography of respondents, crop production activities and insect pest control. Pretesting of the questionnaire in order to assess the appropriateness of questions and comprehension by both farmers and enumerators was done. Data was analysed using descriptive statistics. Fifty five percent (55 %) of the respondents were females and the highest number of participants was from the Chris Hani District Municipality. Majority of the people were unemployed or pensioners. Most had only attended primary school and the mean age was 59 years. Apart from maize, respondents were cultivating other crops such as cabbage, Swiss chard, potatoes etc. Stalk borers followed by cutworms were the main pests of maize in these areas. Respondents used mainly insecticides, followed by alternative substances, which also included cultural control methods such as planting date manipulation. Few respondents used plants as control agents for insect pests. Some people did not control pests even though they were a problem in their fields. The most used plant was Chenopodium ambrosiodes L, while the most used substance was Madubula (a detergent). The most used insecticide was carbaryl from the carbamite family. Respondents listed different preparation techniques for all the control methods mentioned. These techniques revealed different times of preparation, quantities of ingredients, amounts applied on plants, modes of application and intervals of application. Rural farmers in the study areas used different atypical methods which may play a significant role in pest management today. Some of the products may have a positive influence on agriculture, while some are dangerous to humans and environmental health. Further research which will investigate their potential use in pest control needs to be done.
- Full Text:
- Date Issued: 2015
- Authors: Skenjana, Nolitha Leonora
- Date: 2015
- Subjects: Ethnobotany , Stem borers , Biological pest control agents -- South Africa , Corn -- Diseases and pests -- South Africa
- Language: English
- Type: Thesis , Masters , MSc (Ethnobotany)
- Identifier: vital:11312 , http://hdl.handle.net/10353/d1019852 , Ethnobotany , Stem borers , Biological pest control agents -- South Africa , Corn -- Diseases and pests -- South Africa
- Description: Maize contributes substantially to food security in the Eastern Cape province of South Africa. It is a staple food to many of the province’s rural and urban inhabitants. Insect pests are one of the factors that hamper its productivity and as a result, deprive farmers of good yields. The adverse effects of insecticides and the high cost associated with them and the cost of transgenic seeds are some of the challenges faced by small-scale farmers in rural areas. Alternative control methods which include the use of indigenous techniques to control pests are now sought. A study to identify and document ethnobiological means used by rural farmers to manage insect pests of maize was conducted in the rural areas of the Eastern Cape Province. A total of 217 participants were interviewed on the matter, using semi-structured but detailed questionnaires. Rural farmers due to their linkage to agriculture activities and the fact that they are considered as custodians of agricultural indigenous knowledge were selected as respondents. Only maize producing and IsiXhosa speaking people were chosen to contribute. Main focus was on the demography of respondents, crop production activities and insect pest control. Pretesting of the questionnaire in order to assess the appropriateness of questions and comprehension by both farmers and enumerators was done. Data was analysed using descriptive statistics. Fifty five percent (55 %) of the respondents were females and the highest number of participants was from the Chris Hani District Municipality. Majority of the people were unemployed or pensioners. Most had only attended primary school and the mean age was 59 years. Apart from maize, respondents were cultivating other crops such as cabbage, Swiss chard, potatoes etc. Stalk borers followed by cutworms were the main pests of maize in these areas. Respondents used mainly insecticides, followed by alternative substances, which also included cultural control methods such as planting date manipulation. Few respondents used plants as control agents for insect pests. Some people did not control pests even though they were a problem in their fields. The most used plant was Chenopodium ambrosiodes L, while the most used substance was Madubula (a detergent). The most used insecticide was carbaryl from the carbamite family. Respondents listed different preparation techniques for all the control methods mentioned. These techniques revealed different times of preparation, quantities of ingredients, amounts applied on plants, modes of application and intervals of application. Rural farmers in the study areas used different atypical methods which may play a significant role in pest management today. Some of the products may have a positive influence on agriculture, while some are dangerous to humans and environmental health. Further research which will investigate their potential use in pest control needs to be done.
- Full Text:
- Date Issued: 2015
Identification of agricultural and industrial pollutants in the Kat River, Eastern Cape and their effect on agricultural products found along the river banks
- Authors: Mutingwende, Nhamo
- Date: 2015
- Subjects: Environmental toxicology , Rivers -- Environmental aspects -- South Africa , Water -- Pollution -- Toxicology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc (Biochemistry)
- Identifier: vital:11291 , http://hdl.handle.net/10353/d1020242 , Environmental toxicology , Rivers -- Environmental aspects -- South Africa , Water -- Pollution -- Toxicology -- South Africa
- Description: There is growing concern that commonly used Pharmaceuticals and Personal Care Products (PPCPs) and pesticides are entering and contaminating drinking water supplies. The use of targeted quantitation of PPCP has been well established but there is an emerging trend to also screen for and identify unexpected environmental pollutants. Chemicals like pesticides hormones and antibiotics are especially of interest because of proven endocrine disrupting effects and a possible development of bacterial resistance. Powerful screening methods are required to detect and quantify the presence of these compounds in our environment. PPCP encompass a wide range of pollutants, including Endocrine Disrupting Compounds (EDC), pesticides, hormones, antibiotics, drugs of abuse, x-ray contrast agents and drinking water disinfection by-products to name a few. In order to properly assess the effects of these compounds on our environment, it is necessary to accurately monitor their presence. The diversity of chemical properties of these compounds makes method development challenging. LC/MS/MS is able to analyse polar, semi-volatile, and thermally labile compounds covering a wide molecular weight range. The new AB SCIEX TripleTOF™5600 LC/MS/MS was used to profile environmental samples for unexpected pollutants, to identify and characterise the chemical composition and structure of the pollutants, and to quantify (based on intensity) the concentration in collected water samples. Liquid Chromatography coupled to tandem Mass Spectrometry (LCMS/ MS) is able to analyse polar, semi-volatile, and thermally labile compounds covering a wide molecular weight range, such as pesticides, antibiotics, drugs of abuse, x-ray contrast agents, drinking water disinfection by-products etc. More recently there is a growing interest from environmental researchers to also screen for and identify non-targeted compounds in environmental samples, including metabolites and degradates, but also completely unexpected pollutants. The new AB SCIEX TripleTOF™5600 LC/MS/MS system is capable of performing highly sensitive and fast MS scanning experiments to search for unknown molecular ions while also performing selective and characteristic MS/MS scanning for further compound identification and, therefore, is the instrument of choice for this challenging task. General unknown screening workflows do not use a target analyte list and compound detection is not based on any prior knowledge, including retention times and information on possible molecular and fragment ions. Therefore, acquired chromatograms are very rich in information and can easily contain thousands of ions from both any compounds present in the sample as well as from the sample matrix itself. Thus, powerful software tools are needed to explore such data to identify the unexpected compound. Water samples were collected both upstream and downstream of two WWTPs (Seymour and Fort Beaufort) and were directly injected on the AB SCIEX TripleTOF™5600 LC/MS/MS after being filtered. 15 sample points along the Kat River, ranging from a point as close to the source as possible to a point just before it joins the Great Fish River were used. The samples collected from the source were used as the control in each of the experiments, the assumption being the closer you get to the source, the less contaminated the water would be for the analysis of pesticides. Points were selected where the Kat River crosses the R67 or on farms where the river was accessible using farm roads. Samples were collected from October 2013 to November 2014.The Peak view software and Analyst software were used in the analysis of PPCPs. The XIC Manager allows you to manage large lists of compounds and perform automatic extracted ion chromatogram (XIC) calculations and review results operations. The results were displayed in the chromatogram pane and the XIC table (see results). The results reported here in this thesis indicate that there is contamination in the Kat River water due to both pesticides and PPCPs. The results also indicate that the food products are also contaminated and hence both the Kat River agricultural produce and its water need to be closely monitored for both pesticide and PPCPs contaminants. Further studies to investigate the quantitative levels of pesticides and PPCPs in the Kat river water to determine if the concentration levels of the detected pesticides are below the reported Maximum Residues Limits will be explored in the future.
- Full Text:
- Date Issued: 2015
- Authors: Mutingwende, Nhamo
- Date: 2015
- Subjects: Environmental toxicology , Rivers -- Environmental aspects -- South Africa , Water -- Pollution -- Toxicology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc (Biochemistry)
- Identifier: vital:11291 , http://hdl.handle.net/10353/d1020242 , Environmental toxicology , Rivers -- Environmental aspects -- South Africa , Water -- Pollution -- Toxicology -- South Africa
- Description: There is growing concern that commonly used Pharmaceuticals and Personal Care Products (PPCPs) and pesticides are entering and contaminating drinking water supplies. The use of targeted quantitation of PPCP has been well established but there is an emerging trend to also screen for and identify unexpected environmental pollutants. Chemicals like pesticides hormones and antibiotics are especially of interest because of proven endocrine disrupting effects and a possible development of bacterial resistance. Powerful screening methods are required to detect and quantify the presence of these compounds in our environment. PPCP encompass a wide range of pollutants, including Endocrine Disrupting Compounds (EDC), pesticides, hormones, antibiotics, drugs of abuse, x-ray contrast agents and drinking water disinfection by-products to name a few. In order to properly assess the effects of these compounds on our environment, it is necessary to accurately monitor their presence. The diversity of chemical properties of these compounds makes method development challenging. LC/MS/MS is able to analyse polar, semi-volatile, and thermally labile compounds covering a wide molecular weight range. The new AB SCIEX TripleTOF™5600 LC/MS/MS was used to profile environmental samples for unexpected pollutants, to identify and characterise the chemical composition and structure of the pollutants, and to quantify (based on intensity) the concentration in collected water samples. Liquid Chromatography coupled to tandem Mass Spectrometry (LCMS/ MS) is able to analyse polar, semi-volatile, and thermally labile compounds covering a wide molecular weight range, such as pesticides, antibiotics, drugs of abuse, x-ray contrast agents, drinking water disinfection by-products etc. More recently there is a growing interest from environmental researchers to also screen for and identify non-targeted compounds in environmental samples, including metabolites and degradates, but also completely unexpected pollutants. The new AB SCIEX TripleTOF™5600 LC/MS/MS system is capable of performing highly sensitive and fast MS scanning experiments to search for unknown molecular ions while also performing selective and characteristic MS/MS scanning for further compound identification and, therefore, is the instrument of choice for this challenging task. General unknown screening workflows do not use a target analyte list and compound detection is not based on any prior knowledge, including retention times and information on possible molecular and fragment ions. Therefore, acquired chromatograms are very rich in information and can easily contain thousands of ions from both any compounds present in the sample as well as from the sample matrix itself. Thus, powerful software tools are needed to explore such data to identify the unexpected compound. Water samples were collected both upstream and downstream of two WWTPs (Seymour and Fort Beaufort) and were directly injected on the AB SCIEX TripleTOF™5600 LC/MS/MS after being filtered. 15 sample points along the Kat River, ranging from a point as close to the source as possible to a point just before it joins the Great Fish River were used. The samples collected from the source were used as the control in each of the experiments, the assumption being the closer you get to the source, the less contaminated the water would be for the analysis of pesticides. Points were selected where the Kat River crosses the R67 or on farms where the river was accessible using farm roads. Samples were collected from October 2013 to November 2014.The Peak view software and Analyst software were used in the analysis of PPCPs. The XIC Manager allows you to manage large lists of compounds and perform automatic extracted ion chromatogram (XIC) calculations and review results operations. The results were displayed in the chromatogram pane and the XIC table (see results). The results reported here in this thesis indicate that there is contamination in the Kat River water due to both pesticides and PPCPs. The results also indicate that the food products are also contaminated and hence both the Kat River agricultural produce and its water need to be closely monitored for both pesticide and PPCPs contaminants. Further studies to investigate the quantitative levels of pesticides and PPCPs in the Kat river water to determine if the concentration levels of the detected pesticides are below the reported Maximum Residues Limits will be explored in the future.
- Full Text:
- Date Issued: 2015
Implication of tillage, texture and mineralogy on the sieving efficiency, physical-based soil organic matter and aggregate stability of some soils in the Eastern Cape
- Authors: Peter, Prince Chinedu
- Date: 2015
- Subjects: Tillage Soil management -- South Africa -- Eastern Cape Soil physics -- South Africa -- Eastern Cape , Soil structure -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/2710 , vital:28058
- Description: Soil structure and its associated physical properties are essential soil components. Soil texture and mineralogy are inherent soil properties that influence soil management. This study assessed the implication of tillage, texture and mineralogy on soil sieving, aggregate stability indices and physical fractions of organic matter in soils of Eastern Cape Province of South Africa. An Iris FTLVH – 0200 digital electromagnetic sieve shaker (Filtra Vibraciόn SL Spain), was used to determine settings for sieving efficiency. Mean weight diameter (MWD), water stable aggregate (WSA), state of aggregation (SA), dispersion ratio (DR), water dispersible clay (WDC), clay dispersion ratio (CDR), clay flocculation index (CFI), and potential structural deformation index (PSDI) were aggregate stability indices evaluated to check for sensitivity in evaluating aggregate stability of soils under two tillage systems and physical fractions of carbon and nitrogen in soils of Eastern Cape Province. The T4I3P2 and T4I4P3 settings were sensitive under tillage and T4I1P4, T3I4P3 and T4I4P3 were sensitive under mineralogical considerations for sieving efficiency. The total carbon in soils under conventional tillage (CT) was 17.7 g/kg and in soils under no tillage (NT) it was 15.8 g/kg. The total carbon content in the clay fraction of soils under CT was 24.1 percent higher than the total carbon content in the clay fraction of soils under NT. The total nitrogen content in the clay fraction of soils under CT was 5.4 percent higher than the total nitrogen content in the soils under NT. The total carbon in the sandy loam (SL) textured soils was 17.4 g/kg and in the sandy clay loam (SCL) textured soils it was 17.1 g/kg. The total nitrogen in SL soils was 3.7 g/kg and in SCL soils it was 3.7 g/kg. The clay fraction had higher total carbon than other fractions in Sl and SCL soils. The higher values of nitrogen were observed in the silt fraction for SL soils and clay fraction for SCL soils. The total carbon in the soils dominated with kaolinite was 17.3 g/kg and in quartz dominated soils the value was 16.9 g/kg. The total nitrogen in the soils dominated with kaolinite was 3.7 g/kg and in the soils dominated with quartz the value was 3.7 g/kg. For soils under NT the WDC was 135.8 g/kg and for soils under CT it was 139.7 g/kg. The ASC was 72.5 for soils under NT and 92.0for soils under CT. The DR was 0.9 for soils under NT and 0.8 for soils under CT. The CFI was 0.5 for soils under NT and 0.5 for soils under CT. The CDR was 0.5 for soils under NT and 0.5 for soils under CT. The MWDw was 1.6 mm for soils under NT and 1.4 mm for soils under CT. The MWDd was 4.0 mm for soils under NT and 4.0 for soils under CT. The percent WSA > 0.25 mm was 61.7 percent for soils under NT and 56.2 percent for soils under CT. The PSDI was 55.2 percent for soils under NT and 61.15 percent for soils under CT. The SA was 43.2 percent for soils under NT and 37.89 percent for soils under CT. The WDC was 125.7 g/kg for SCL soils and 151.4 g/kg for SL soils. The CDR was 0.5 for both SCL and SL soils. The DR was 0.9 for SCL soils and 0.8 for SL soils. The CFI was 0.5 for both SCL and SL soils. The ASC was 56.2 g/kg for SCL soils and 115 g/kg for SL soils. The MWDw was 1.5 mm for SCL soils and 1.4 mm for SL soils. The MWDd was 3.6 mm for SCL soils and 3.6 mm for SL soils. The percent WSA > 0.25 mm was 53.0 percent for SCL soils and 62.5 percent for SL soils. The PSDI was 59.2 percent for SCL soils and 59.7 percent for SL soils. The SA was 33.6 percent for SCL soils and 45.2 percent for SL soils. The WDC was 313.3 g/kg for kaolinitic soils and 120.7 g/kg for quartz dominated soils. The CDR was 0.5 for kaolinitic soils and 0.5 for quartz dominated soils. The DR was 0.9 for kaolinitic soils and 0.8 for quartz dominated soils. The CFI was 0.5 for kaolinitic soils and 0.5 for quartz dominated soils. The ASC was 110.0 g/kg for kaolinitic soils and 101.7 g/kg for quartz dominated soils. The WSA > 0.25 mm was 57.3 percent for quartz dominated soils and 68.4 percent for kaolinitic soils. The MWDw was 1.6 mm for quartz dominated soils and 0.8 mm for kaolinitic soils. The MWDd was 3.6 mm for quartz dominated soils and 3.4 mm for kaolinitic soils. The PSDI was 56.3 for quartz dominated soils and 76.0 for kaolinitic soils.
- Full Text:
- Date Issued: 2015
- Authors: Peter, Prince Chinedu
- Date: 2015
- Subjects: Tillage Soil management -- South Africa -- Eastern Cape Soil physics -- South Africa -- Eastern Cape , Soil structure -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/2710 , vital:28058
- Description: Soil structure and its associated physical properties are essential soil components. Soil texture and mineralogy are inherent soil properties that influence soil management. This study assessed the implication of tillage, texture and mineralogy on soil sieving, aggregate stability indices and physical fractions of organic matter in soils of Eastern Cape Province of South Africa. An Iris FTLVH – 0200 digital electromagnetic sieve shaker (Filtra Vibraciόn SL Spain), was used to determine settings for sieving efficiency. Mean weight diameter (MWD), water stable aggregate (WSA), state of aggregation (SA), dispersion ratio (DR), water dispersible clay (WDC), clay dispersion ratio (CDR), clay flocculation index (CFI), and potential structural deformation index (PSDI) were aggregate stability indices evaluated to check for sensitivity in evaluating aggregate stability of soils under two tillage systems and physical fractions of carbon and nitrogen in soils of Eastern Cape Province. The T4I3P2 and T4I4P3 settings were sensitive under tillage and T4I1P4, T3I4P3 and T4I4P3 were sensitive under mineralogical considerations for sieving efficiency. The total carbon in soils under conventional tillage (CT) was 17.7 g/kg and in soils under no tillage (NT) it was 15.8 g/kg. The total carbon content in the clay fraction of soils under CT was 24.1 percent higher than the total carbon content in the clay fraction of soils under NT. The total nitrogen content in the clay fraction of soils under CT was 5.4 percent higher than the total nitrogen content in the soils under NT. The total carbon in the sandy loam (SL) textured soils was 17.4 g/kg and in the sandy clay loam (SCL) textured soils it was 17.1 g/kg. The total nitrogen in SL soils was 3.7 g/kg and in SCL soils it was 3.7 g/kg. The clay fraction had higher total carbon than other fractions in Sl and SCL soils. The higher values of nitrogen were observed in the silt fraction for SL soils and clay fraction for SCL soils. The total carbon in the soils dominated with kaolinite was 17.3 g/kg and in quartz dominated soils the value was 16.9 g/kg. The total nitrogen in the soils dominated with kaolinite was 3.7 g/kg and in the soils dominated with quartz the value was 3.7 g/kg. For soils under NT the WDC was 135.8 g/kg and for soils under CT it was 139.7 g/kg. The ASC was 72.5 for soils under NT and 92.0for soils under CT. The DR was 0.9 for soils under NT and 0.8 for soils under CT. The CFI was 0.5 for soils under NT and 0.5 for soils under CT. The CDR was 0.5 for soils under NT and 0.5 for soils under CT. The MWDw was 1.6 mm for soils under NT and 1.4 mm for soils under CT. The MWDd was 4.0 mm for soils under NT and 4.0 for soils under CT. The percent WSA > 0.25 mm was 61.7 percent for soils under NT and 56.2 percent for soils under CT. The PSDI was 55.2 percent for soils under NT and 61.15 percent for soils under CT. The SA was 43.2 percent for soils under NT and 37.89 percent for soils under CT. The WDC was 125.7 g/kg for SCL soils and 151.4 g/kg for SL soils. The CDR was 0.5 for both SCL and SL soils. The DR was 0.9 for SCL soils and 0.8 for SL soils. The CFI was 0.5 for both SCL and SL soils. The ASC was 56.2 g/kg for SCL soils and 115 g/kg for SL soils. The MWDw was 1.5 mm for SCL soils and 1.4 mm for SL soils. The MWDd was 3.6 mm for SCL soils and 3.6 mm for SL soils. The percent WSA > 0.25 mm was 53.0 percent for SCL soils and 62.5 percent for SL soils. The PSDI was 59.2 percent for SCL soils and 59.7 percent for SL soils. The SA was 33.6 percent for SCL soils and 45.2 percent for SL soils. The WDC was 313.3 g/kg for kaolinitic soils and 120.7 g/kg for quartz dominated soils. The CDR was 0.5 for kaolinitic soils and 0.5 for quartz dominated soils. The DR was 0.9 for kaolinitic soils and 0.8 for quartz dominated soils. The CFI was 0.5 for kaolinitic soils and 0.5 for quartz dominated soils. The ASC was 110.0 g/kg for kaolinitic soils and 101.7 g/kg for quartz dominated soils. The WSA > 0.25 mm was 57.3 percent for quartz dominated soils and 68.4 percent for kaolinitic soils. The MWDw was 1.6 mm for quartz dominated soils and 0.8 mm for kaolinitic soils. The MWDd was 3.6 mm for quartz dominated soils and 3.4 mm for kaolinitic soils. The PSDI was 56.3 for quartz dominated soils and 76.0 for kaolinitic soils.
- Full Text:
- Date Issued: 2015
Investigation into the characteristics and possible applications of biomass gasification by-products from a downdraft gasifier system
- Authors: Melapi, Aviwe
- Date: 2015
- Subjects: Biomass gasification -- South Africa -- Eastern Cape , Renewable energy sources -- South Africa -- Eastern Cape , Biomass energy -- South Africa -- Eastern Cape , Crop residue management -- South Africa -- Eastern Cape , Coal gasification -- South Africa -- Eastern Cape , Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11348 , http://hdl.handle.net/10353/d1020174 , Biomass gasification -- South Africa -- Eastern Cape , Renewable energy sources -- South Africa -- Eastern Cape , Biomass energy -- South Africa -- Eastern Cape , Crop residue management -- South Africa -- Eastern Cape , Coal gasification -- South Africa -- Eastern Cape , Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape
- Description: Biomass gasification has attracted the interest of researchers because it produces zero carbon to the atmosphere. This technology does not only produce syngas but also the byproducts which can be used for various application depending on quality.The study conducted at Melani village in Alice in the Eastern Cape of South Africa was aimed at investigating the possible applications of the gasification byproducts instead of being thrown away. Pine wood was employed as the parent feedstock material for the gasifier. Biomass gasification by-products were then collected for further analysis. The studied by-products included tar(condensate), char, soot and resin. These materials were also blended to produce strong materials.The essence of the blending was to generate ideal material that is strong but light at the same time.The elemental analysis of the samples performed by CHNS analyser revealed that carbon element is in large quantities in all samples. The FTIR spectra showed almost similar results for all the studied samples, since the samples are end products of lignocellulosegasification. SEM gave the sticky images of resin as well as porous char structures. Char showed a higher heating value of 35.37MJ/Kg when compared to other by-products samples.
- Full Text:
- Date Issued: 2015
- Authors: Melapi, Aviwe
- Date: 2015
- Subjects: Biomass gasification -- South Africa -- Eastern Cape , Renewable energy sources -- South Africa -- Eastern Cape , Biomass energy -- South Africa -- Eastern Cape , Crop residue management -- South Africa -- Eastern Cape , Coal gasification -- South Africa -- Eastern Cape , Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11348 , http://hdl.handle.net/10353/d1020174 , Biomass gasification -- South Africa -- Eastern Cape , Renewable energy sources -- South Africa -- Eastern Cape , Biomass energy -- South Africa -- Eastern Cape , Crop residue management -- South Africa -- Eastern Cape , Coal gasification -- South Africa -- Eastern Cape , Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape
- Description: Biomass gasification has attracted the interest of researchers because it produces zero carbon to the atmosphere. This technology does not only produce syngas but also the byproducts which can be used for various application depending on quality.The study conducted at Melani village in Alice in the Eastern Cape of South Africa was aimed at investigating the possible applications of the gasification byproducts instead of being thrown away. Pine wood was employed as the parent feedstock material for the gasifier. Biomass gasification by-products were then collected for further analysis. The studied by-products included tar(condensate), char, soot and resin. These materials were also blended to produce strong materials.The essence of the blending was to generate ideal material that is strong but light at the same time.The elemental analysis of the samples performed by CHNS analyser revealed that carbon element is in large quantities in all samples. The FTIR spectra showed almost similar results for all the studied samples, since the samples are end products of lignocellulosegasification. SEM gave the sticky images of resin as well as porous char structures. Char showed a higher heating value of 35.37MJ/Kg when compared to other by-products samples.
- Full Text:
- Date Issued: 2015
Isolation and characterisation of lignocellulose degrading bacteria from Tyume River in the Eastern Cape Province, South Africa
- Authors: Tembisa, Papiyana Ayavuya
- Date: 2015
- Subjects: Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Waterborne infection -- South Africa -- Eastern Cape , Bacteriophages -- South Africa -- Eastern Cape , Sediments (Geology) -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11299 , http://hdl.handle.net/10353/d1021293 , Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Waterborne infection -- South Africa -- Eastern Cape , Bacteriophages -- South Africa -- Eastern Cape , Sediments (Geology) -- South Africa -- Eastern Cape
- Description: This study focuses on the isolation and characterization of bacteria from lignocellulosic biomass obtained from the sediments of the Tyume River in Alice, Eastern Cape and to determine those bacterial isolates with good potential for modification and decomposition of lignocellulosic biomass for industrial application. Several bacterial isolates were recovered and screened for ability to degrade various lignocellulosic materials. Nine of the isolates were positive for lignocellulolytic activity. Four isolates were cellulase positive and six were xylanase positive. Moreover, one isolate (SB1) was positive for both xylanase and cellulase activities and showed the best hydrolysis zone on solid media. This isolate was then chosen as the best and identified molecularly. The 16S rDNA sequence analysis indicated that SB1 was a Bacillus cereus species. Factors affecting the cellulose and xylanase enzyme production by the organisms were studied. The organisms produced the enzymes maximally at earlier hours of incubation (12-30 hr) and optimally at acidic pH (3-5) and at moderate temperatures (35-45ºC). SB1 appears to hold promise in the decomposition of lignocellulosic wastes.
- Full Text:
- Date Issued: 2015
- Authors: Tembisa, Papiyana Ayavuya
- Date: 2015
- Subjects: Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Waterborne infection -- South Africa -- Eastern Cape , Bacteriophages -- South Africa -- Eastern Cape , Sediments (Geology) -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11299 , http://hdl.handle.net/10353/d1021293 , Lignocellulose -- Biodegradation -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Waterborne infection -- South Africa -- Eastern Cape , Bacteriophages -- South Africa -- Eastern Cape , Sediments (Geology) -- South Africa -- Eastern Cape
- Description: This study focuses on the isolation and characterization of bacteria from lignocellulosic biomass obtained from the sediments of the Tyume River in Alice, Eastern Cape and to determine those bacterial isolates with good potential for modification and decomposition of lignocellulosic biomass for industrial application. Several bacterial isolates were recovered and screened for ability to degrade various lignocellulosic materials. Nine of the isolates were positive for lignocellulolytic activity. Four isolates were cellulase positive and six were xylanase positive. Moreover, one isolate (SB1) was positive for both xylanase and cellulase activities and showed the best hydrolysis zone on solid media. This isolate was then chosen as the best and identified molecularly. The 16S rDNA sequence analysis indicated that SB1 was a Bacillus cereus species. Factors affecting the cellulose and xylanase enzyme production by the organisms were studied. The organisms produced the enzymes maximally at earlier hours of incubation (12-30 hr) and optimally at acidic pH (3-5) and at moderate temperatures (35-45ºC). SB1 appears to hold promise in the decomposition of lignocellulosic wastes.
- Full Text:
- Date Issued: 2015
Isolation and molecular characterization of Bacillus cereus from cow’s raw milk
- Authors: Lukanji, Zinathi , Ndip, R N
- Date: 2015
- Subjects: Milk contamination -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Foodborne diseases -- Molecular diagnosis -- South Africa -- Eastern Cape , Dairy products -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11296 , http://hdl.handle.net/10353/d1021284 , Milk contamination -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Foodborne diseases -- Molecular diagnosis -- South Africa -- Eastern Cape , Dairy products -- South Africa -- Eastern Cape
- Description: Bacillus cereus is a group of ubiquitous facultative anaerobic spore forming Gram-positive rods commonly found in soil. It has been detected and implicated in several contaminated food products and raw milk in dairy farms and it causes foodborne gastroenteritis by producing several toxins. This study is aimed at characterizing virulence determinants of B. cereus from cow‟s raw milk. A total of 400 raw milk samples were collected in Fort Hare Dairy Trust and Middledrift Dairy Farm; and cultured on Polymyxin pyruvate Egg-Yolk Mannitol Bromothymol Agar (PEMBA) for 48 hours at 37°C. DNA was isolated from the isolates and 16S rDNA was amplified and sent to Central Analytical Laboratory for sequencing. The gyrB gene of B. cereus was also used to confirm the identity of the isolates. Antibiotic susceptibility profiles of the isolates together with virulence genes were investigated. Multilocus Sequence typing was used to investigate the genetic relatedness of some selected isolates. Furthermore, spores of the isolates were produced, harvested and their concentrations determined. All (100%) of the isolates were identified as having a 96-99% similarity to B. cereus, B. thuringiensis and B. anthracis using sequencing; while gyrB gene was observed in all (100%) of the isolates. Three virulence genes nheA, nheB, nheC encoding for non haemolysin enterotoxin were amplified in all (100%) the isolates. All (100%) of the isolates were susceptible to doxycycline, gentamycin, tetracycline, ciprofloxacin, chloramphenicol and streptomycin. Resistance to rifampicin and penicillin G was predominant with equal rate of 100%, while susceptibility to erythromycin, clindamycin and doxycycline ranged from 60% to 100%. The selected isolates were related and are descendants of the same ancestor. All (100%) the isolates produced spores. The B. cereus isolates contain virulence genes, has multiple antibiotic drug resistance and produce spores, which poses a health risk to the public and cannot be used as probiotics.
- Full Text:
- Date Issued: 2015
- Authors: Lukanji, Zinathi , Ndip, R N
- Date: 2015
- Subjects: Milk contamination -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Foodborne diseases -- Molecular diagnosis -- South Africa -- Eastern Cape , Dairy products -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11296 , http://hdl.handle.net/10353/d1021284 , Milk contamination -- South Africa -- Eastern Cape , Bacillus (Bacteria) -- South Africa -- Eastern Cape , Foodborne diseases -- Molecular diagnosis -- South Africa -- Eastern Cape , Dairy products -- South Africa -- Eastern Cape
- Description: Bacillus cereus is a group of ubiquitous facultative anaerobic spore forming Gram-positive rods commonly found in soil. It has been detected and implicated in several contaminated food products and raw milk in dairy farms and it causes foodborne gastroenteritis by producing several toxins. This study is aimed at characterizing virulence determinants of B. cereus from cow‟s raw milk. A total of 400 raw milk samples were collected in Fort Hare Dairy Trust and Middledrift Dairy Farm; and cultured on Polymyxin pyruvate Egg-Yolk Mannitol Bromothymol Agar (PEMBA) for 48 hours at 37°C. DNA was isolated from the isolates and 16S rDNA was amplified and sent to Central Analytical Laboratory for sequencing. The gyrB gene of B. cereus was also used to confirm the identity of the isolates. Antibiotic susceptibility profiles of the isolates together with virulence genes were investigated. Multilocus Sequence typing was used to investigate the genetic relatedness of some selected isolates. Furthermore, spores of the isolates were produced, harvested and their concentrations determined. All (100%) of the isolates were identified as having a 96-99% similarity to B. cereus, B. thuringiensis and B. anthracis using sequencing; while gyrB gene was observed in all (100%) of the isolates. Three virulence genes nheA, nheB, nheC encoding for non haemolysin enterotoxin were amplified in all (100%) the isolates. All (100%) of the isolates were susceptible to doxycycline, gentamycin, tetracycline, ciprofloxacin, chloramphenicol and streptomycin. Resistance to rifampicin and penicillin G was predominant with equal rate of 100%, while susceptibility to erythromycin, clindamycin and doxycycline ranged from 60% to 100%. The selected isolates were related and are descendants of the same ancestor. All (100%) the isolates produced spores. The B. cereus isolates contain virulence genes, has multiple antibiotic drug resistance and produce spores, which poses a health risk to the public and cannot be used as probiotics.
- Full Text:
- Date Issued: 2015
Isolation, characterisation of terpenoids and biosynthesis of silver nanoparticles of acacia mearnsii de wild and acacia Karroo Hayne and their Bioassays
- Authors: Avoseh, Opeyemi Nudewhenu
- Date: 2015
- Language: English
- Type: Thesis , Doctoral , PhD (Chemistry)
- Identifier: vital:11355 , http://hdl.handle.net/10353/d1021292
- Description: Great wealth of traditional knowledge about the use of plants had been transferred from generation to generations leading to the present day drug discovery and invention of new scientific methods of isolation, purification and identification. With the discovery of new diseases and drug-resistant organisms, there is no other source or deposit of lead compounds or drugs than the plant kingdom. As a result of this, about 25% of the current drug administered owe their origin to plant sources with the view to reduce the carcinogenic effect of synthetic drugs. Volatile terpenoids among other broad spectrum of natural product had been implicated to show high therapeutic properly. In the present study, selected locally-used medicinal plants were exploited for the presence of potent bioactive compounds and ability to form nanoparticles with distinctive property for use as chemoprotective agent against inflammation, tumors, cancer and other chronic diseases. Acacia mearnsii De Wild and Acacia karroo Hayne studied in this report are known to be invasive species with no proper regulation to conserve and preserve them. However, ethnopharmacology report of these plant species in the Southern Africa region reveals that they are good antiseptic, anti-diarrhea, anti-inflammation and a forage for livestock. These plants were subjected to volatile extraction protocol of some parts of the plants (stem and leaves) followed by examination of the anti-inflammation capacity of the extracts using an animal model. In addition, the bye-product (hydrosol) from the stem bark of each species possess a high reducing and stabilizing property leading to synthesis of silver nanoparticles, followed by investigation of the anti-inflammation potential of the synthesized silver nanoparticles using animal model. The volatile oils of the leaves and stem bark of Acacia mearnsii De Wild obtained by hydro-distillation were analyzed by Gas Chromatography-Mass Spectrometry (GC-MS). Twenty, Thirty-Eight, Twenty-nine and Thirty-Eight components accounting for 93.8%, 92.1%, 78.5% and 90.9% of the total oils of the fresh, dry leaves and fresh, dry stem bark respectively. The major components of the oil were octadecyl alcohol (25.5%) and phytol (10.5%); cis-verbenol (29.5%); phytol (10.1%) and phytol (23.4%) for the fresh leaves, dried leaves, and fresh stem, dry stem bark respectively. Oral administration of essential oils at the dose of 2% showed significant (p<0.05) anti-inflammatory properties in the albumin induced test model in rats. Oils from the fresh leaves and dry stems inhibited inflammation beyond 4 h post treatment. Furthermore, the chemical composition of the essential oils obtained by hydro-distillation from the leaves and stem bark (dry and fresh) of Acacia karroo Hayne, analysed by GC-MS, shows that hexanal (10.67%) and ß-ionone (9.74%) were dominant in the dried leaves, β-pinene (14.30%), and (Z)-2-Hexen-1-ol (10.21%) in the fresh leaves while Octacosane (10.59%) and phytol (23.38%) were dominant in the dry and fresh stem respectively. The anti-inflammation ability of these oils after an albumin-induced inflammation on wistar rats, shows a significant effect at the 1st h of treatment with a significance of P< 0.01 for all part plants, while the fresh leaves shows further inhibitory activities at the 2nd h of analysis. Silver nanoparticles (AgNPs) were successfully synthesized from AgNO3 through a green route using the aqueous extract (hydrosols) of Acacia mearnsii De Wild and Acacia karroo Hayne as reducing agent and as well as capping agent. The Acacia-mediated AgNPs were characterized with the use of UV-vis absorption spectroscopy, Fourier Transform Spectroscopy (FT-IR), Transmission electron microscope (TEM), Scanning Electron Microscope (SEM), Energy Dispersive Spectroscopy (EDX), and X-ray Diffractometry (XRD). A spherical, 10-40 nm diameter silver nanoparticles were synthesized with very low level of stability for the AMDS and the AKDS-AgNPs. In addition, nociceptive activity with a mice rat reveals higher inhibition at the neurogenic phase for the AKDS-AgNPs, while AMDS-AgNPs exhibited a high inhibition at the inflammatory phase. The potent anti-inflammatory activity of essential oils of A. mearnsii De Wild and A. karroo Hayne hereby confirmed its traditional use in treating various inflammatory diseases, while the inflammatory studies on the synthesized AgNPs reveals a very active compound which can be used as a potent opioid or non-steroidal anti-inflammatory drug (NSAID).
- Full Text:
- Date Issued: 2015
- Authors: Avoseh, Opeyemi Nudewhenu
- Date: 2015
- Language: English
- Type: Thesis , Doctoral , PhD (Chemistry)
- Identifier: vital:11355 , http://hdl.handle.net/10353/d1021292
- Description: Great wealth of traditional knowledge about the use of plants had been transferred from generation to generations leading to the present day drug discovery and invention of new scientific methods of isolation, purification and identification. With the discovery of new diseases and drug-resistant organisms, there is no other source or deposit of lead compounds or drugs than the plant kingdom. As a result of this, about 25% of the current drug administered owe their origin to plant sources with the view to reduce the carcinogenic effect of synthetic drugs. Volatile terpenoids among other broad spectrum of natural product had been implicated to show high therapeutic properly. In the present study, selected locally-used medicinal plants were exploited for the presence of potent bioactive compounds and ability to form nanoparticles with distinctive property for use as chemoprotective agent against inflammation, tumors, cancer and other chronic diseases. Acacia mearnsii De Wild and Acacia karroo Hayne studied in this report are known to be invasive species with no proper regulation to conserve and preserve them. However, ethnopharmacology report of these plant species in the Southern Africa region reveals that they are good antiseptic, anti-diarrhea, anti-inflammation and a forage for livestock. These plants were subjected to volatile extraction protocol of some parts of the plants (stem and leaves) followed by examination of the anti-inflammation capacity of the extracts using an animal model. In addition, the bye-product (hydrosol) from the stem bark of each species possess a high reducing and stabilizing property leading to synthesis of silver nanoparticles, followed by investigation of the anti-inflammation potential of the synthesized silver nanoparticles using animal model. The volatile oils of the leaves and stem bark of Acacia mearnsii De Wild obtained by hydro-distillation were analyzed by Gas Chromatography-Mass Spectrometry (GC-MS). Twenty, Thirty-Eight, Twenty-nine and Thirty-Eight components accounting for 93.8%, 92.1%, 78.5% and 90.9% of the total oils of the fresh, dry leaves and fresh, dry stem bark respectively. The major components of the oil were octadecyl alcohol (25.5%) and phytol (10.5%); cis-verbenol (29.5%); phytol (10.1%) and phytol (23.4%) for the fresh leaves, dried leaves, and fresh stem, dry stem bark respectively. Oral administration of essential oils at the dose of 2% showed significant (p<0.05) anti-inflammatory properties in the albumin induced test model in rats. Oils from the fresh leaves and dry stems inhibited inflammation beyond 4 h post treatment. Furthermore, the chemical composition of the essential oils obtained by hydro-distillation from the leaves and stem bark (dry and fresh) of Acacia karroo Hayne, analysed by GC-MS, shows that hexanal (10.67%) and ß-ionone (9.74%) were dominant in the dried leaves, β-pinene (14.30%), and (Z)-2-Hexen-1-ol (10.21%) in the fresh leaves while Octacosane (10.59%) and phytol (23.38%) were dominant in the dry and fresh stem respectively. The anti-inflammation ability of these oils after an albumin-induced inflammation on wistar rats, shows a significant effect at the 1st h of treatment with a significance of P< 0.01 for all part plants, while the fresh leaves shows further inhibitory activities at the 2nd h of analysis. Silver nanoparticles (AgNPs) were successfully synthesized from AgNO3 through a green route using the aqueous extract (hydrosols) of Acacia mearnsii De Wild and Acacia karroo Hayne as reducing agent and as well as capping agent. The Acacia-mediated AgNPs were characterized with the use of UV-vis absorption spectroscopy, Fourier Transform Spectroscopy (FT-IR), Transmission electron microscope (TEM), Scanning Electron Microscope (SEM), Energy Dispersive Spectroscopy (EDX), and X-ray Diffractometry (XRD). A spherical, 10-40 nm diameter silver nanoparticles were synthesized with very low level of stability for the AMDS and the AKDS-AgNPs. In addition, nociceptive activity with a mice rat reveals higher inhibition at the neurogenic phase for the AKDS-AgNPs, while AMDS-AgNPs exhibited a high inhibition at the inflammatory phase. The potent anti-inflammatory activity of essential oils of A. mearnsii De Wild and A. karroo Hayne hereby confirmed its traditional use in treating various inflammatory diseases, while the inflammatory studies on the synthesized AgNPs reveals a very active compound which can be used as a potent opioid or non-steroidal anti-inflammatory drug (NSAID).
- Full Text:
- Date Issued: 2015
Microbiological analyses of beef slaughtering process and meat safety knowledge of handlers at selected high and low thoughput abattoirs
- Authors: Nyamakwere, Faith
- Date: 2015
- Subjects: Slaughtering and slaughter-houses -- South Africa -- Eastern Cape Meat industry and trade -- Quality control Beef -- Quality -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2238 , vital:27712
- Description: The objective of the study was to evaluate meat hygiene practices among meat handlers and microbiological analysis of beef carcasses, slaughtermen hands, equipment and water from low throughput (LTA) and high throughput (HTA) abattoirs in the Eastern Cape Province of South Africa. In stage one of the study, the level of knowledge, practices and attitudes towards meat safety and personal hygiene of slaughtermen were assessed. Forty workers directly involve in beef cattle slaughtering process were surveyed. Data were collected using a structured questionnaire, it contained questions on some of the most important meat safety cues such as knowledge, attitudes, personal hygiene and handling practices. Cross tabulation and Chi-square Test of Association were performed to examine the relationships between the demographic information and the knowledge regarding meat safety using the Statistical Package for Social Sciences (SPSS) version 22. Overall, a significant adherence to basic hygiene practices and a satisfactory level of knowledge were observed. Workers from a HTA yielded comparatively better statistically significant scores. Moreover, knowledge and practices of respondents were significantly associated (P<0.05) due to educational level and professional training. The second stage of the study involved evaluating the level to which cattle carcass, equipment, slaughtermen hands and water were contaminated with Enterobacteriaceae, Salmonella, Escherichia coli and aerobic colony counts (ACC) at different stages during the slaughter process (skinning, evisceration, carcass slitting, inspection, washing and packing). Cattle carcasses were sampled at four sites (rump, neck, flank and brisket) from a LTA (n= 240) and HTA (n= 384) abattoirs. Using conventional biochemical tests, HTA yielded significantly (P<0.05) higher ACC (5.2 log CFU/cm2), E. coli (2.6 log CFU/cm2) and Enterobacteriaceae (2.9 log CFU/cm2) carcass mean scores than LTA after skinning and evisceration. Specific abattoir hygiene differences were noted from washed and chilled carcasses. Salmonella was not detected across all sampled slaughter process stages. In addition, the equipment had bacterial load ranging from 10 to 4 CFU/cm2 for LTA, whereas in HTA this was found to be 7 to 3 CFU/cm2. The bacterial counts for slaughtermen hands were estimated to be 15 to 8 CFU/cm2 in HTA and 10 to 5 CFU/cm2 in LTA. Overall, slaughtermen hands and equipment in the dirty area (skinning and evisceration) yielded more bacterial counts compared to those in the clean area (slitting, inspection, washing and packing) from both abattoirs. For all the sampled carcasses, equipment and slaughtermen hands, HTA yielded comparatively higher (P<0.05) bacterial counts than the LTA. Although the results showed a significant adherence to basic hygiene practices, some aspects such as routine medical examination, health certificates and professional training of slaughtermen still need to be improved. Therefore, these findings show that slaughtermen, equipment and water can be sources of contamination during the slaughter process.
- Full Text:
- Date Issued: 2015
- Authors: Nyamakwere, Faith
- Date: 2015
- Subjects: Slaughtering and slaughter-houses -- South Africa -- Eastern Cape Meat industry and trade -- Quality control Beef -- Quality -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2238 , vital:27712
- Description: The objective of the study was to evaluate meat hygiene practices among meat handlers and microbiological analysis of beef carcasses, slaughtermen hands, equipment and water from low throughput (LTA) and high throughput (HTA) abattoirs in the Eastern Cape Province of South Africa. In stage one of the study, the level of knowledge, practices and attitudes towards meat safety and personal hygiene of slaughtermen were assessed. Forty workers directly involve in beef cattle slaughtering process were surveyed. Data were collected using a structured questionnaire, it contained questions on some of the most important meat safety cues such as knowledge, attitudes, personal hygiene and handling practices. Cross tabulation and Chi-square Test of Association were performed to examine the relationships between the demographic information and the knowledge regarding meat safety using the Statistical Package for Social Sciences (SPSS) version 22. Overall, a significant adherence to basic hygiene practices and a satisfactory level of knowledge were observed. Workers from a HTA yielded comparatively better statistically significant scores. Moreover, knowledge and practices of respondents were significantly associated (P<0.05) due to educational level and professional training. The second stage of the study involved evaluating the level to which cattle carcass, equipment, slaughtermen hands and water were contaminated with Enterobacteriaceae, Salmonella, Escherichia coli and aerobic colony counts (ACC) at different stages during the slaughter process (skinning, evisceration, carcass slitting, inspection, washing and packing). Cattle carcasses were sampled at four sites (rump, neck, flank and brisket) from a LTA (n= 240) and HTA (n= 384) abattoirs. Using conventional biochemical tests, HTA yielded significantly (P<0.05) higher ACC (5.2 log CFU/cm2), E. coli (2.6 log CFU/cm2) and Enterobacteriaceae (2.9 log CFU/cm2) carcass mean scores than LTA after skinning and evisceration. Specific abattoir hygiene differences were noted from washed and chilled carcasses. Salmonella was not detected across all sampled slaughter process stages. In addition, the equipment had bacterial load ranging from 10 to 4 CFU/cm2 for LTA, whereas in HTA this was found to be 7 to 3 CFU/cm2. The bacterial counts for slaughtermen hands were estimated to be 15 to 8 CFU/cm2 in HTA and 10 to 5 CFU/cm2 in LTA. Overall, slaughtermen hands and equipment in the dirty area (skinning and evisceration) yielded more bacterial counts compared to those in the clean area (slitting, inspection, washing and packing) from both abattoirs. For all the sampled carcasses, equipment and slaughtermen hands, HTA yielded comparatively higher (P<0.05) bacterial counts than the LTA. Although the results showed a significant adherence to basic hygiene practices, some aspects such as routine medical examination, health certificates and professional training of slaughtermen still need to be improved. Therefore, these findings show that slaughtermen, equipment and water can be sources of contamination during the slaughter process.
- Full Text:
- Date Issued: 2015
Ni(II) and Pb(II) dithiocarbamate complexes as precursors for the synthesis of HDA-capped NiS and PbS nanoparticles
- Authors: Chintso, Thobani
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11349 , http://hdl.handle.net/10353/d1020201
- Description: Ni(II) and Pb(II) dithiocarbamate complexes were synthesized and characterized by elemental analysis, UV-Vis, FTIR and TGA and some of the Ni(II) complexes and one Pb(II) were further analyzed by 1H-NMR and 13C-NMR spectroscopy. Generally all the dithiocarbamate ligands are soluble in water while the complexes were soluble mostly in solvents such as chloroform, toluene, DMSO and DCM. Based on the elemental analysis, the dithiocarbamate complexes are formulated as four coordinate (tetrahedral or square planar) compounds. However, the FTIR showed that each of the dithiocarbamate ligands acted as bidentate ligand through two sulfur atoms. The TGA of the most complexes showed one major decomposition step to give respective metal sulfide above 200 oC. In this research project, dithiocarbamate complexes were used as single source precursor for the synthesis of metal sulfide nanoparticles. We studied the optical and structural properties of metal sulfide nanoparticles using UV-Vis, photoluminescence (PL), powder X-ray diffraction (XRD), energy dispersive X-ray (EDX), scanning electron microscopy (SEM) and transmission electron microscopy (TEM). The absorption spectra of the metal sulfide nanoparticles are blue shifted in respect to bulk material and they also showed broad emission. The XRD of the NiS nanoparticles were indexed to the cubic and rhombohedral phase, with crystallite sizes of 15 - 18 nm. The XRD of PbS nanoparticles were indexed to the face centered cubic and cubic rock salts, with the crystallite sizes 12 - 18 nm. The TEM images of the metal sulfide nanoparticles showed particles with spherical and rectangular shapes with crystallite sizes 4 - 35 nm.
- Full Text:
- Date Issued: 2015
- Authors: Chintso, Thobani
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11349 , http://hdl.handle.net/10353/d1020201
- Description: Ni(II) and Pb(II) dithiocarbamate complexes were synthesized and characterized by elemental analysis, UV-Vis, FTIR and TGA and some of the Ni(II) complexes and one Pb(II) were further analyzed by 1H-NMR and 13C-NMR spectroscopy. Generally all the dithiocarbamate ligands are soluble in water while the complexes were soluble mostly in solvents such as chloroform, toluene, DMSO and DCM. Based on the elemental analysis, the dithiocarbamate complexes are formulated as four coordinate (tetrahedral or square planar) compounds. However, the FTIR showed that each of the dithiocarbamate ligands acted as bidentate ligand through two sulfur atoms. The TGA of the most complexes showed one major decomposition step to give respective metal sulfide above 200 oC. In this research project, dithiocarbamate complexes were used as single source precursor for the synthesis of metal sulfide nanoparticles. We studied the optical and structural properties of metal sulfide nanoparticles using UV-Vis, photoluminescence (PL), powder X-ray diffraction (XRD), energy dispersive X-ray (EDX), scanning electron microscopy (SEM) and transmission electron microscopy (TEM). The absorption spectra of the metal sulfide nanoparticles are blue shifted in respect to bulk material and they also showed broad emission. The XRD of the NiS nanoparticles were indexed to the cubic and rhombohedral phase, with crystallite sizes of 15 - 18 nm. The XRD of PbS nanoparticles were indexed to the face centered cubic and cubic rock salts, with the crystallite sizes 12 - 18 nm. The TEM images of the metal sulfide nanoparticles showed particles with spherical and rectangular shapes with crystallite sizes 4 - 35 nm.
- Full Text:
- Date Issued: 2015
Nutritional value and cultivation requirements of Cleome Gynandra: a wild vegetable growing in the Eastern Cape Province, South Africa
- Sowunmi, Linda Ifeanyichukwu
- Authors: Sowunmi, Linda Ifeanyichukwu
- Date: 2015
- Subjects: Ethnobotany -- South Africa -- Eastern Cape Vegetables -- South Africa -- Eastern Cape Nutrition -- South Africa -- Evaluation
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10353/2600 , vital:27907
- Description: South Africa has wide ranges of plants among which are leafy vegetables growing in the wild. These wild vegetables have been reported to have high nutritive and medicinal potentials. Yet, there is still high prevalence of malnutrition and micronutrients deficiencies among the low income bracket of the population. Effective utilization of wild vegetables has been proposed as part of the solutions to address the problem of dietary deficiencies among the populace. Their importance is mainly as relish to accompany and complement starch based diets. They are also known to serve as supplements for food which have the potential to improve the health status of its consumers in many rural communities. Cleome gynandra L. (Capparaceae) is one of the underutilized species mentioned during asurvey conducted in Nkonkobe municipality of the Eastern Cape Province, South Africa. The plant is an erect annual herb with alternate, palmately compound leaves and its petals are white, pink or lilac. It grows as a weed in this part of the Province and is usually gathered from the wild for food and medicine. It is commonly found on wastes land, road sides and on grass lands. Therefore, this research work was designed to contribute to the possible domestication of this wild vegetable in order to explore the nutritive and therapeutic potentials which would broaden the food base in the Eastern Cape Province. The ultra-micromorphological features of plants have become an essential tool in proper identification and authentication of several plant species. In the light of this, the micromorphology of Cleome gynandra was examined to reveal the micro-morphological characters of the plantand to determine if micro and macro mineral elements are present using energy dispersive x-rays. The present study revealed the epidermal cells of the leaves to be asymmetric in shape with undulating cell walls having four subsidiary cells around the stomata. The leaves have anomocyctic stomata which are more distributed in the abaxial surface than the adaxial surface. The mean length and width of the guard cells in the abaxial surface are 0.09 ± 0.01 mm and 0.08 ± 0.01 mm respectively while that of adaxial surface are 0.1± 0.01 mm and 0.07 ± 0.01 mm respectively. The energy dispersive x-rays (EDXS) micro-analysis of the leaf revealed the presence of phosphorus, manganese, iron, calcium, sodium, magnesium, potassium and zinc as the major constituents of the crystal deposits present in the stomata pores and the mesophyll. C. gynandra was collected from the wild and analysed for its mineral and proximatecomposition using standard analytical methods. The plant showed high levels of sodium, iron, zinc, calcium and potassium while many other macro and micro minerals were moderately present. Amongst the proximate factors investigated, moisture content was found to be 82.1% while crude fibre and protein contents were 39.9 percent and 31.03 percent respectively. Vitamin C was also high (345.3 mg/100g). The anti-nutrients compositions revealed low concentrations of oxalate (7.4 ± 0.4) and phytate (0.6 ± 0.0) mg/100g. The study revealed high nutritive value of the species growing naturally from the wild. Interest in the phenolic compounds has greatly increased recently because these compounds have been implicated in suppressing the risk of degenerative diseases in humans. The pharmacological properties of plants may be related to their antioxidant capacities and hence there was need to investigate the antioxidant potential using aqueous, ethanolic and acetone extracts of different parts of C. gynandra. The quantities of phenols, flavonoids and flavonols were significantly higher (p < 0.05) in both aqueous and ethanol extracts of the leaf while the concentration of proanthocyanidins was higher in the aqueous stem extract compared to other plant parts. The aqueous extract of the different parts exhibited better ABTS, reducing power and NO radical scavenging abilities than ethanol extract.
- Full Text:
- Date Issued: 2015
- Authors: Sowunmi, Linda Ifeanyichukwu
- Date: 2015
- Subjects: Ethnobotany -- South Africa -- Eastern Cape Vegetables -- South Africa -- Eastern Cape Nutrition -- South Africa -- Evaluation
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10353/2600 , vital:27907
- Description: South Africa has wide ranges of plants among which are leafy vegetables growing in the wild. These wild vegetables have been reported to have high nutritive and medicinal potentials. Yet, there is still high prevalence of malnutrition and micronutrients deficiencies among the low income bracket of the population. Effective utilization of wild vegetables has been proposed as part of the solutions to address the problem of dietary deficiencies among the populace. Their importance is mainly as relish to accompany and complement starch based diets. They are also known to serve as supplements for food which have the potential to improve the health status of its consumers in many rural communities. Cleome gynandra L. (Capparaceae) is one of the underutilized species mentioned during asurvey conducted in Nkonkobe municipality of the Eastern Cape Province, South Africa. The plant is an erect annual herb with alternate, palmately compound leaves and its petals are white, pink or lilac. It grows as a weed in this part of the Province and is usually gathered from the wild for food and medicine. It is commonly found on wastes land, road sides and on grass lands. Therefore, this research work was designed to contribute to the possible domestication of this wild vegetable in order to explore the nutritive and therapeutic potentials which would broaden the food base in the Eastern Cape Province. The ultra-micromorphological features of plants have become an essential tool in proper identification and authentication of several plant species. In the light of this, the micromorphology of Cleome gynandra was examined to reveal the micro-morphological characters of the plantand to determine if micro and macro mineral elements are present using energy dispersive x-rays. The present study revealed the epidermal cells of the leaves to be asymmetric in shape with undulating cell walls having four subsidiary cells around the stomata. The leaves have anomocyctic stomata which are more distributed in the abaxial surface than the adaxial surface. The mean length and width of the guard cells in the abaxial surface are 0.09 ± 0.01 mm and 0.08 ± 0.01 mm respectively while that of adaxial surface are 0.1± 0.01 mm and 0.07 ± 0.01 mm respectively. The energy dispersive x-rays (EDXS) micro-analysis of the leaf revealed the presence of phosphorus, manganese, iron, calcium, sodium, magnesium, potassium and zinc as the major constituents of the crystal deposits present in the stomata pores and the mesophyll. C. gynandra was collected from the wild and analysed for its mineral and proximatecomposition using standard analytical methods. The plant showed high levels of sodium, iron, zinc, calcium and potassium while many other macro and micro minerals were moderately present. Amongst the proximate factors investigated, moisture content was found to be 82.1% while crude fibre and protein contents were 39.9 percent and 31.03 percent respectively. Vitamin C was also high (345.3 mg/100g). The anti-nutrients compositions revealed low concentrations of oxalate (7.4 ± 0.4) and phytate (0.6 ± 0.0) mg/100g. The study revealed high nutritive value of the species growing naturally from the wild. Interest in the phenolic compounds has greatly increased recently because these compounds have been implicated in suppressing the risk of degenerative diseases in humans. The pharmacological properties of plants may be related to their antioxidant capacities and hence there was need to investigate the antioxidant potential using aqueous, ethanolic and acetone extracts of different parts of C. gynandra. The quantities of phenols, flavonoids and flavonols were significantly higher (p < 0.05) in both aqueous and ethanol extracts of the leaf while the concentration of proanthocyanidins was higher in the aqueous stem extract compared to other plant parts. The aqueous extract of the different parts exhibited better ABTS, reducing power and NO radical scavenging abilities than ethanol extract.
- Full Text:
- Date Issued: 2015
Perceptions of indigenous people regarding mental illness at Cacadu District in the Eastern Cape Province of South Africa
- Authors: Tilolo, Lwazi Romeo
- Date: 2015
- Subjects: Indigenous peoples -- Mental health -- South Africa -- Eastern Cape Cultural psychiatry -- South Africa -- Eastern Cape Healers -- South Africa -- Eastern Cape , Ethnopsychology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2677 , vital:27983
- Description: Indigenous people tend to consult traditional healers when a family member manifests change in behaviour, whilst conventional treatment disregards spirituality when preserving mental health. The aim of the study was to explore the perceptions of indigenous people and the role of traditional healers in the management of mentally ill persons within the Cacadu District in the Eastern Cape Province of South Africa. The study has adopted a qualitative approach which was exploratory and descriptive in nature. The sample consisted of nine relatives of mental health care users (MHCUs) and six traditional healers. Ethical principles were also taken into consideration by the researcher during the process of conducting the study. Data were collected from two strata, namely, relatives of the MHCUs and the traditional healers and an interview guide was used to conduct in-depth face-to-face interviews. Data were analysed using Tesch’s method of data analysis. Four themes emerged from the data categories and sub categories were identified. According to the themes participants indicated the negative impact of mental illness; as a result they portrayed great desperation regarding the means of accessing a cure for mental illness. Some participants showed insufficient knowledge regarding mental illness and had different perceptions and beliefs regarding the origin of mental illness. Available literature was used to emphasise and support the views that were expressed by both traditional healers and relatives of MHCUs. It has been highlighted from this study that indigenous people of Cacadu District view mental illness as spiritual in origin but they include Western medication for the benefit of the mentally ill. In addition, the relatives of the MHCUs highlighted the economic burden as the major problem that results from mental illness.
- Full Text:
- Date Issued: 2015
- Authors: Tilolo, Lwazi Romeo
- Date: 2015
- Subjects: Indigenous peoples -- Mental health -- South Africa -- Eastern Cape Cultural psychiatry -- South Africa -- Eastern Cape Healers -- South Africa -- Eastern Cape , Ethnopsychology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2677 , vital:27983
- Description: Indigenous people tend to consult traditional healers when a family member manifests change in behaviour, whilst conventional treatment disregards spirituality when preserving mental health. The aim of the study was to explore the perceptions of indigenous people and the role of traditional healers in the management of mentally ill persons within the Cacadu District in the Eastern Cape Province of South Africa. The study has adopted a qualitative approach which was exploratory and descriptive in nature. The sample consisted of nine relatives of mental health care users (MHCUs) and six traditional healers. Ethical principles were also taken into consideration by the researcher during the process of conducting the study. Data were collected from two strata, namely, relatives of the MHCUs and the traditional healers and an interview guide was used to conduct in-depth face-to-face interviews. Data were analysed using Tesch’s method of data analysis. Four themes emerged from the data categories and sub categories were identified. According to the themes participants indicated the negative impact of mental illness; as a result they portrayed great desperation regarding the means of accessing a cure for mental illness. Some participants showed insufficient knowledge regarding mental illness and had different perceptions and beliefs regarding the origin of mental illness. Available literature was used to emphasise and support the views that were expressed by both traditional healers and relatives of MHCUs. It has been highlighted from this study that indigenous people of Cacadu District view mental illness as spiritual in origin but they include Western medication for the benefit of the mentally ill. In addition, the relatives of the MHCUs highlighted the economic burden as the major problem that results from mental illness.
- Full Text:
- Date Issued: 2015
Phytochemical analysis and antibacterial properties of aqueous and ethanol extracts of Brachylaena elliptica (Thurb.) dc. and Brachylaena ilicifolia (Lam.) Phill & Schweick
- Authors: Sagbo, Idowu Jonas
- Date: 2015
- Subjects: Medicinal plants , Traditional medicine , Herbs -- Therapeutic use
- Language: English
- Type: Thesis , Masters , MSc (Biochemistry)
- Identifier: vital:11297 , http://hdl.handle.net/10353/d1021289 , Medicinal plants , Traditional medicine , Herbs -- Therapeutic use
- Description: Resistance of human pathogenic bacterial strains results in selective pressure against known antibiotic. However, plant derived compounds that possess antibacterial potential are currently being investigated for treatment of wound infections in diabetic patients as they are inexpensive and non-toxic. Hence, this dissertation was designed to evaluate two medicinal plants (Brachylaena elliptica and Brachylaena ilicifolia) traditionally used in the treatment of various diseases such as diabetes, and its secondary complications in diabetic patients. The in vitro antioxidant activity of both plants were evaluated using DPPH (1, 1-diphenylhydrazl), ferric reducing power, ABTS (2, 2’-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid), NO (nitric oxide) and H2O2 (hydrogen peroxide) techniques. The antibacterial test and Minimum inhibitory concentration (MIC) was determined by agar dilution method against 5 bacteria strains (Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus pyogene, Proteus vulgaris and Proteus mirabilis) infecting wounds in diabetic patients using amoxicillin and ciprofloxacin as positive control. The phytochemical analyses were assessed using standard published methods. Identification of bioactive components in essential oils of both plants were assessed using GCMS. The aqueous and ethanol extracts of both plants were also evaluated to identify bioactive components using LC-MS. The results of the phytochemical analysis revealed the presence of phenols, tannins, flavanoids, flavanols, proanthocyanidins, saponins and alkaloids in both plants. Both plants indicated strong antioxidant activities which might be due to the presence of bioactive compounds. The aqueous and ethanol leaf extracts of both plants demonstrated appreciable broad spectrum activities against these wound pathogens with MIC ranging between 5 and 0.3 mg/ml. The GC-MS analysis of the essential oils of both plants revealed the presence of monoterpenes, oxygenated sesquiterpenes, phenolics and esters. The LC-MS analysis of the aqueous and ethanol leaf extracts of both plants showed that both plants are rich in alkaloids, terpenes, terpenoids, monoterpernoids, and flavanoids. Conclusively, this study has partially justified the ethnomedicinal use of B. elliptica and B.licifolia leaves for the treatment of various diseases, including diabetes and wound infections caused by bacteria in diabetic patients. These may be attributed to the presence of antioxidant compound such as phenols, flavanoids, saponins, tannins, alkaloids and other phytochemical compounds.
- Full Text:
- Date Issued: 2015
- Authors: Sagbo, Idowu Jonas
- Date: 2015
- Subjects: Medicinal plants , Traditional medicine , Herbs -- Therapeutic use
- Language: English
- Type: Thesis , Masters , MSc (Biochemistry)
- Identifier: vital:11297 , http://hdl.handle.net/10353/d1021289 , Medicinal plants , Traditional medicine , Herbs -- Therapeutic use
- Description: Resistance of human pathogenic bacterial strains results in selective pressure against known antibiotic. However, plant derived compounds that possess antibacterial potential are currently being investigated for treatment of wound infections in diabetic patients as they are inexpensive and non-toxic. Hence, this dissertation was designed to evaluate two medicinal plants (Brachylaena elliptica and Brachylaena ilicifolia) traditionally used in the treatment of various diseases such as diabetes, and its secondary complications in diabetic patients. The in vitro antioxidant activity of both plants were evaluated using DPPH (1, 1-diphenylhydrazl), ferric reducing power, ABTS (2, 2’-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid), NO (nitric oxide) and H2O2 (hydrogen peroxide) techniques. The antibacterial test and Minimum inhibitory concentration (MIC) was determined by agar dilution method against 5 bacteria strains (Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus pyogene, Proteus vulgaris and Proteus mirabilis) infecting wounds in diabetic patients using amoxicillin and ciprofloxacin as positive control. The phytochemical analyses were assessed using standard published methods. Identification of bioactive components in essential oils of both plants were assessed using GCMS. The aqueous and ethanol extracts of both plants were also evaluated to identify bioactive components using LC-MS. The results of the phytochemical analysis revealed the presence of phenols, tannins, flavanoids, flavanols, proanthocyanidins, saponins and alkaloids in both plants. Both plants indicated strong antioxidant activities which might be due to the presence of bioactive compounds. The aqueous and ethanol leaf extracts of both plants demonstrated appreciable broad spectrum activities against these wound pathogens with MIC ranging between 5 and 0.3 mg/ml. The GC-MS analysis of the essential oils of both plants revealed the presence of monoterpenes, oxygenated sesquiterpenes, phenolics and esters. The LC-MS analysis of the aqueous and ethanol leaf extracts of both plants showed that both plants are rich in alkaloids, terpenes, terpenoids, monoterpernoids, and flavanoids. Conclusively, this study has partially justified the ethnomedicinal use of B. elliptica and B.licifolia leaves for the treatment of various diseases, including diabetes and wound infections caused by bacteria in diabetic patients. These may be attributed to the presence of antioxidant compound such as phenols, flavanoids, saponins, tannins, alkaloids and other phytochemical compounds.
- Full Text:
- Date Issued: 2015
Prevalence and antibiogram of some swine associated Shiga toxin producing Escherichia coli Serogroups and Salmonella species in Nkonkobe Municipality, Eastern Cape Province, South Africa
- Authors: Iwu, Chinwe Juliana
- Date: 2015
- Subjects: Escherichia coli -- South Africa -- Eastern Cape , Salmonella infections -- South Africa -- Eastern Cape , Water -- Pollution -- Environmental aspects -- South Africa -- Eastern Cape , Escherichia coli infections -- South Africa -- Eastern Cape , Water quality management -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11294 , http://hdl.handle.net/10353/d1021273 , Escherichia coli -- South Africa -- Eastern Cape , Salmonella infections -- South Africa -- Eastern Cape , Water -- Pollution -- Environmental aspects -- South Africa -- Eastern Cape , Escherichia coli infections -- South Africa -- Eastern Cape , Water quality management -- South Africa -- Eastern Cape
- Description: Gastrointestinal illnesses have continually become a global public health issue. Exposure to zoonotic food borne pathogens such as Salmonella and diarrhoegenic E. coli either by direct or indirect contact through the consumption of food producing animals is likely an important mode of infection to humans. More so, the use of antibiotics in farm animals similar to those used in humans can select for resistance in bacteria frequently harboured by them. These resistant strains can be passed on to humans through contaminated meat products and water leading to resistant infections with consequences such as prolonged illnesses, treatment failures, and increased morbidity and mortality. In animals, these can lead to reduced productivity. Monitoring the level of resistance among bacteria from animal isolates will help in generating data that could be used to create awareness of their presence in the environment and aid in preventing a potential epidemic in the community. In this study, we investigated the prevalence and antimicrobial resistance profile of Escherichia coli serogroups and Salmonella species in faecal samples collected from pigs in Nkonkobe Municipality in the Eastern Cape Province, South Africa between April – July, 2014. A total of 310 presumptive Shiga toxin producing Escherichia coli (STEC) were confirmed as E. coli spp using polymerase chain reaction (PCR) technique by amplification of the uidA gene, out of which 179 (58%) were confirmed positive. Approximately, serogrougs O157:H7, O145 and O26 made up 24% (n=43), 8% (n=14) and 20% (n=35) of the E. coli population respectively. Only E. coli O26 was positive for stx2 gene in 31% of the isolates harbouring the gene, while the other serogroups were non-pathogenic. Susceptibility of the isolates to 18 antibiotics was carried out in vitro by the standardized agar disc-diffusion method. All the isolates were susceptible to imipenem. Similarly, a relatively high susceptibility was observed in norfloxacin (83-100%), ciprofloxacin (63-100%), gentamycin (77-100%), and chloramphenicol (77-100%). However, all the isolates were resistant to tetracycline and its long acting counterpart oxytetracycline. Resistances observed against other antimicrobials are as follows: ampicillin (84-91%), streptomycin (14-100%), erythromycin (91-100%), ceftazidime (35%). Multiple antimicrobial resistance patterns and indices ranged from 3 to 12 and 0.2 to 0.7 to respectively. Genes encoding resistances to ampicillin (ampC), streptomycin (strA) and tetracycline (tetA) were frequently detected in 50-100%, 22-29% and 40-86% of the resistant isolates respectively. In the other arm of the dissertation, two hundred and fifty eight presumptive isolates of Salmonella were recovered from the faecal samples of pigs. Specific primers targeting serogroups A, B, C1, C2, and D were used to delineate the isolates into different serogroups using PCR. Only serogroup A (n=48) was detected. These isolates were examined for antimicrobial susceptibility by disc diffusion method using 18 antibiotics. The results showed that a large proportion of the isolates were resistant to tetracycline (100%), oxytetracycline (100%), ampicillin (75%), sulphamethoxazole/trimethoprim (75%) and streptomycin (75%). Majority of the isolates exhibited multidrug resistances with the predominant multiple antibiotic resistance (MAR) phenotype being against eleven antibiotics. A high multiple antibiotic resistance (MAR) index in a range of 0.3- 0.6 was observed. The incidence of genes encoding resistance against tetracycline (tetA), streptomycin (stra), and ampicillin (ampC) were 54%, 44% and 61% respectively. These findings reveal that pigs within the Nkonkobe Municipality in the Eastern Cape Province could harbour Shiga toxins and multidrug resistant serogroups of E. coli as well as resistant Salmonella which could be transmitted to humans through the food chain. To ensure public health safety, continuous monitoring and sufficient sanitation in swine industries must be ensured.
- Full Text:
- Date Issued: 2015
- Authors: Iwu, Chinwe Juliana
- Date: 2015
- Subjects: Escherichia coli -- South Africa -- Eastern Cape , Salmonella infections -- South Africa -- Eastern Cape , Water -- Pollution -- Environmental aspects -- South Africa -- Eastern Cape , Escherichia coli infections -- South Africa -- Eastern Cape , Water quality management -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11294 , http://hdl.handle.net/10353/d1021273 , Escherichia coli -- South Africa -- Eastern Cape , Salmonella infections -- South Africa -- Eastern Cape , Water -- Pollution -- Environmental aspects -- South Africa -- Eastern Cape , Escherichia coli infections -- South Africa -- Eastern Cape , Water quality management -- South Africa -- Eastern Cape
- Description: Gastrointestinal illnesses have continually become a global public health issue. Exposure to zoonotic food borne pathogens such as Salmonella and diarrhoegenic E. coli either by direct or indirect contact through the consumption of food producing animals is likely an important mode of infection to humans. More so, the use of antibiotics in farm animals similar to those used in humans can select for resistance in bacteria frequently harboured by them. These resistant strains can be passed on to humans through contaminated meat products and water leading to resistant infections with consequences such as prolonged illnesses, treatment failures, and increased morbidity and mortality. In animals, these can lead to reduced productivity. Monitoring the level of resistance among bacteria from animal isolates will help in generating data that could be used to create awareness of their presence in the environment and aid in preventing a potential epidemic in the community. In this study, we investigated the prevalence and antimicrobial resistance profile of Escherichia coli serogroups and Salmonella species in faecal samples collected from pigs in Nkonkobe Municipality in the Eastern Cape Province, South Africa between April – July, 2014. A total of 310 presumptive Shiga toxin producing Escherichia coli (STEC) were confirmed as E. coli spp using polymerase chain reaction (PCR) technique by amplification of the uidA gene, out of which 179 (58%) were confirmed positive. Approximately, serogrougs O157:H7, O145 and O26 made up 24% (n=43), 8% (n=14) and 20% (n=35) of the E. coli population respectively. Only E. coli O26 was positive for stx2 gene in 31% of the isolates harbouring the gene, while the other serogroups were non-pathogenic. Susceptibility of the isolates to 18 antibiotics was carried out in vitro by the standardized agar disc-diffusion method. All the isolates were susceptible to imipenem. Similarly, a relatively high susceptibility was observed in norfloxacin (83-100%), ciprofloxacin (63-100%), gentamycin (77-100%), and chloramphenicol (77-100%). However, all the isolates were resistant to tetracycline and its long acting counterpart oxytetracycline. Resistances observed against other antimicrobials are as follows: ampicillin (84-91%), streptomycin (14-100%), erythromycin (91-100%), ceftazidime (35%). Multiple antimicrobial resistance patterns and indices ranged from 3 to 12 and 0.2 to 0.7 to respectively. Genes encoding resistances to ampicillin (ampC), streptomycin (strA) and tetracycline (tetA) were frequently detected in 50-100%, 22-29% and 40-86% of the resistant isolates respectively. In the other arm of the dissertation, two hundred and fifty eight presumptive isolates of Salmonella were recovered from the faecal samples of pigs. Specific primers targeting serogroups A, B, C1, C2, and D were used to delineate the isolates into different serogroups using PCR. Only serogroup A (n=48) was detected. These isolates were examined for antimicrobial susceptibility by disc diffusion method using 18 antibiotics. The results showed that a large proportion of the isolates were resistant to tetracycline (100%), oxytetracycline (100%), ampicillin (75%), sulphamethoxazole/trimethoprim (75%) and streptomycin (75%). Majority of the isolates exhibited multidrug resistances with the predominant multiple antibiotic resistance (MAR) phenotype being against eleven antibiotics. A high multiple antibiotic resistance (MAR) index in a range of 0.3- 0.6 was observed. The incidence of genes encoding resistance against tetracycline (tetA), streptomycin (stra), and ampicillin (ampC) were 54%, 44% and 61% respectively. These findings reveal that pigs within the Nkonkobe Municipality in the Eastern Cape Province could harbour Shiga toxins and multidrug resistant serogroups of E. coli as well as resistant Salmonella which could be transmitted to humans through the food chain. To ensure public health safety, continuous monitoring and sufficient sanitation in swine industries must be ensured.
- Full Text:
- Date Issued: 2015
Regional differentiation of three goatfishes (Parupeneus Spp.) within the Western Indian Ocean
- Springbok–Njokweni, Nosiphiwo
- Authors: Springbok–Njokweni, Nosiphiwo
- Date: 2015
- Subjects: Marine fishes -- South Africa , Mitochondrial DNA -- South Africa , Mullidae -- South Africa , Biogeography -- South Africa
- Language: English
- Type: Thesis , Masters , MSc (Zoology)
- Identifier: vital:11798 , http://hdl.handle.net/10353/d1020262 , Marine fishes -- South Africa , Mitochondrial DNA -- South Africa , Mullidae -- South Africa , Biogeography -- South Africa
- Description: Goatfishes inhabit inshore reefs and corals and are commercially important across their distribution in the Western Indian Ocean (WIO). The biogeography of these species in the WIO has not been explored with regards to their levels of diversity and relationships among regions. The genetic connectivity and differentiation of three goatfishes of the genus Parupeneus (P. barberinus, P. macronemus and P. rubescens) was studied using two mitochondrial genes (ND2 and 16S rRNA) and one nuclear gene (RAG1) using specimens from East and southern Africa, islands around the Mascarene plateau, Oman, Maldives and the Red Sea. Haplotype diversities, networks and AMOVA were used to measure genetic variance among localities and defined regional groups. There were high haplotype (HD > 0.9) and low nucleotide diversities (< 0.006) among all species for all gene regions, suggesting high levels of genetic differentiation among different areas, except for the mtDNA 16S data for P. macronemus and P. rubescens. For all three species, the FST population pairwise values revealed significant differentiation in all datasets for most population pairwise comparisons with the Maldives and genetic connectivity with haplotypes being shared among other localities. The 16S and RAG1, AMOVA for P. barberinus revealed a significant (P < 0.05) strong genetic structure among groups, for example P = 0.00 was estimated in the 16S data for four groups (the Maldives, WIO islands, Kenya and eastern mainland). This study found evidence for regional differentiation within the WIO for these three species supporting the presence of genetic breaks among areas. This differentiation could be either due to the historical isolation among areas or due to geographic and oceanic barriers such as the Mascarene Plateau and the Agulhas Current eddies in the Mozambique Channel. The effects of oceanographic features and physical barriers in the species distribution range and the dispersal potential based on the life history features of the species can have an influence on the genetic structuring of a population. It is also important to note that the length of the pelagic larval phase is just one factor affecting dispersal in marine organisms that can also explain the difference in genetic population structure. Unfortunately there is no specific information on the larval dispersal of these three goatfish. Therefore, studies are needed to be conducted on the specific biology and life history strategies of each Parupeneus species. These results suggest the importance of other factors, such as currents, and larval retention that may cause strong differentiation. These factors should also be considered when observing larval dispersal and its effect on population genetic structure. This study support the hypotheses that physical factors, processes (geographic barriers and oceanographic characteristics) and life history parameters need to be studied to understand the genetic differentiation of these Parupeneus reef fishes.
- Full Text:
- Date Issued: 2015
- Authors: Springbok–Njokweni, Nosiphiwo
- Date: 2015
- Subjects: Marine fishes -- South Africa , Mitochondrial DNA -- South Africa , Mullidae -- South Africa , Biogeography -- South Africa
- Language: English
- Type: Thesis , Masters , MSc (Zoology)
- Identifier: vital:11798 , http://hdl.handle.net/10353/d1020262 , Marine fishes -- South Africa , Mitochondrial DNA -- South Africa , Mullidae -- South Africa , Biogeography -- South Africa
- Description: Goatfishes inhabit inshore reefs and corals and are commercially important across their distribution in the Western Indian Ocean (WIO). The biogeography of these species in the WIO has not been explored with regards to their levels of diversity and relationships among regions. The genetic connectivity and differentiation of three goatfishes of the genus Parupeneus (P. barberinus, P. macronemus and P. rubescens) was studied using two mitochondrial genes (ND2 and 16S rRNA) and one nuclear gene (RAG1) using specimens from East and southern Africa, islands around the Mascarene plateau, Oman, Maldives and the Red Sea. Haplotype diversities, networks and AMOVA were used to measure genetic variance among localities and defined regional groups. There were high haplotype (HD > 0.9) and low nucleotide diversities (< 0.006) among all species for all gene regions, suggesting high levels of genetic differentiation among different areas, except for the mtDNA 16S data for P. macronemus and P. rubescens. For all three species, the FST population pairwise values revealed significant differentiation in all datasets for most population pairwise comparisons with the Maldives and genetic connectivity with haplotypes being shared among other localities. The 16S and RAG1, AMOVA for P. barberinus revealed a significant (P < 0.05) strong genetic structure among groups, for example P = 0.00 was estimated in the 16S data for four groups (the Maldives, WIO islands, Kenya and eastern mainland). This study found evidence for regional differentiation within the WIO for these three species supporting the presence of genetic breaks among areas. This differentiation could be either due to the historical isolation among areas or due to geographic and oceanic barriers such as the Mascarene Plateau and the Agulhas Current eddies in the Mozambique Channel. The effects of oceanographic features and physical barriers in the species distribution range and the dispersal potential based on the life history features of the species can have an influence on the genetic structuring of a population. It is also important to note that the length of the pelagic larval phase is just one factor affecting dispersal in marine organisms that can also explain the difference in genetic population structure. Unfortunately there is no specific information on the larval dispersal of these three goatfish. Therefore, studies are needed to be conducted on the specific biology and life history strategies of each Parupeneus species. These results suggest the importance of other factors, such as currents, and larval retention that may cause strong differentiation. These factors should also be considered when observing larval dispersal and its effect on population genetic structure. This study support the hypotheses that physical factors, processes (geographic barriers and oceanographic characteristics) and life history parameters need to be studied to understand the genetic differentiation of these Parupeneus reef fishes.
- Full Text:
- Date Issued: 2015
Socio-economic factors influencing the adoption of in-field rainwater harvesting technololgy for enhancing household food security by small holder farmers in the Nkonkobe Municipality, Eastern Cape Province
- Shange, Nomfundo Sinethemba Queen
- Authors: Shange, Nomfundo Sinethemba Queen
- Date: 2015
- Subjects: Farms, Small -- South Africa -- Eastern Cape , Water harvesting -- South Africa -- Eastern Cape , Sustainable agriculture -- South Africa -- Eastern Cape , Water resources development -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc Agric (Agricultural Economics)
- Identifier: http://hdl.handle.net/10353/734 , vital:26492 , Farms, Small -- South Africa -- Eastern Cape , Water harvesting -- South Africa -- Eastern Cape , Sustainable agriculture -- South Africa -- Eastern Cape , Water resources development -- South Africa -- Eastern Cape
- Description: Infield rainwater harvesting (IRWH) technology has been used in arid and semi-arid parts of the world and promising results have been achieved in terms of increasing yield. The main aim of this study was to identify socio-economic factors determining the adoption of IRWH technology for enhancing household food security by smallholder farmers. The specific objectives were to assess the level of adoption of IRWH technology using descriptive statistics (mean, frequency and percentages). To determine socio-economic factors influencing adoption of IRWH technology, the binary logistic regression mode l was used. To determine whether adopters of IRWH technology are more food secure than non-adopters, the Household Dietary Diversity Score (HDDS) was used as a measure for household food security. For the same objective, to determine socio-economic factors that influence household food security, the binary logistic regression model was also used and adoption of IRWH technology became an independent variable. The study was conducted in Khayalethu, Guquka and Krwakrwa villages in Nkonkobe Municipality in the Eastern Cape Province (EC). The unit of analysis was the individual smallholder farmers practicing agriculture. The availability (accidental) and snowball sampling techniques were used to select 34, 23, 63 respondents from Khayalethu, Guquka and Krwakrwa villages respectively. Since they are non-random, these sampling methods are problematic because of sampling errors. Overall, a sample size of 120 smallholder farmers was targeted for the interviews. Primary and secondary data collected was coded and analysed using statistical package for social sciences (SPSS) version 21. Results were presented using graphs, pie charts and tables (including cross-tables). The descriptive results showed that adoption status of IRWH technology was low in these areas, with 79% not adopting the technology. Food insecurity was high amongst the non-adopters with 86%. On the basis of descriptive analysis it can be concluded that any change in each one of the significant variables can significantly influence the probability of adopting IRWH technology and household food security. The results from the logistic regression model for the incidence of adoption revealed that 6 out of 16 variables were significant, three at 1% (access to extension services, access to information and farmers’ perception towards the IRWH technology); one at 5% (access to market) and two at 10% (access to hired labour and farm income). For the incidence of household food security, out of 17 variables, 6 were significant, three at 1% (adoption of the IRWH technology, access to extension services and farmers’ perception towards the IRWH technology); two at 5% (access to hired labour and household income) and one at 10% (household size). The empirical findings of this study indicate that there are socio-economic factors influencing adoption of IRWH technology and household food security amongst smallholder farmers. This study recommends that the government should provide extension officers and research stations with the capacity, support and physical means to expose smallholder farmers to the IRWH technology through demonstrations and trainings. The government can also introduce agricultural finance institutions in rural areas to assist the rural smallholder farmers to increase their access to credit. Further, it is recommended that smallholder farmers can expand to the communal croplands in order to gain more land size and work as a co-operative or as an association to ease labour constraints.
- Full Text:
- Date Issued: 2015
- Authors: Shange, Nomfundo Sinethemba Queen
- Date: 2015
- Subjects: Farms, Small -- South Africa -- Eastern Cape , Water harvesting -- South Africa -- Eastern Cape , Sustainable agriculture -- South Africa -- Eastern Cape , Water resources development -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc Agric (Agricultural Economics)
- Identifier: http://hdl.handle.net/10353/734 , vital:26492 , Farms, Small -- South Africa -- Eastern Cape , Water harvesting -- South Africa -- Eastern Cape , Sustainable agriculture -- South Africa -- Eastern Cape , Water resources development -- South Africa -- Eastern Cape
- Description: Infield rainwater harvesting (IRWH) technology has been used in arid and semi-arid parts of the world and promising results have been achieved in terms of increasing yield. The main aim of this study was to identify socio-economic factors determining the adoption of IRWH technology for enhancing household food security by smallholder farmers. The specific objectives were to assess the level of adoption of IRWH technology using descriptive statistics (mean, frequency and percentages). To determine socio-economic factors influencing adoption of IRWH technology, the binary logistic regression mode l was used. To determine whether adopters of IRWH technology are more food secure than non-adopters, the Household Dietary Diversity Score (HDDS) was used as a measure for household food security. For the same objective, to determine socio-economic factors that influence household food security, the binary logistic regression model was also used and adoption of IRWH technology became an independent variable. The study was conducted in Khayalethu, Guquka and Krwakrwa villages in Nkonkobe Municipality in the Eastern Cape Province (EC). The unit of analysis was the individual smallholder farmers practicing agriculture. The availability (accidental) and snowball sampling techniques were used to select 34, 23, 63 respondents from Khayalethu, Guquka and Krwakrwa villages respectively. Since they are non-random, these sampling methods are problematic because of sampling errors. Overall, a sample size of 120 smallholder farmers was targeted for the interviews. Primary and secondary data collected was coded and analysed using statistical package for social sciences (SPSS) version 21. Results were presented using graphs, pie charts and tables (including cross-tables). The descriptive results showed that adoption status of IRWH technology was low in these areas, with 79% not adopting the technology. Food insecurity was high amongst the non-adopters with 86%. On the basis of descriptive analysis it can be concluded that any change in each one of the significant variables can significantly influence the probability of adopting IRWH technology and household food security. The results from the logistic regression model for the incidence of adoption revealed that 6 out of 16 variables were significant, three at 1% (access to extension services, access to information and farmers’ perception towards the IRWH technology); one at 5% (access to market) and two at 10% (access to hired labour and farm income). For the incidence of household food security, out of 17 variables, 6 were significant, three at 1% (adoption of the IRWH technology, access to extension services and farmers’ perception towards the IRWH technology); two at 5% (access to hired labour and household income) and one at 10% (household size). The empirical findings of this study indicate that there are socio-economic factors influencing adoption of IRWH technology and household food security amongst smallholder farmers. This study recommends that the government should provide extension officers and research stations with the capacity, support and physical means to expose smallholder farmers to the IRWH technology through demonstrations and trainings. The government can also introduce agricultural finance institutions in rural areas to assist the rural smallholder farmers to increase their access to credit. Further, it is recommended that smallholder farmers can expand to the communal croplands in order to gain more land size and work as a co-operative or as an association to ease labour constraints.
- Full Text:
- Date Issued: 2015
Stratigraphy and sedimentology of the Msikaba formation in KwaZulu Natal South Coast, South Africa
- Authors: Busakwe, Nolukholo Sinovuyo
- Date: 2015
- Subjects: Geology, Stratigraphic Sedimentology -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2501 , vital:27877
- Description: The Msikaba Formation is a Late Devonian fluvial and marine succession which outcrops from Hibberdene to Port Edward along the south coast of KwaZulu-Natal Province, South Africa. The Formation is composed of brownish conglomerate at the bottom and white-greyish quartz arenite sequence in the middle and mixed quartz-arenite with feldspathic sandstone in the upper sequence. Previous studies put more emphasis on the correlation of Msikaba Formation with the Natal Group and Cape Supergroup, whereas this study revised the stratigraphy, and also put new insight on the petrography, sedimentary facies, depositional environments and diagenesis of the Formation. The total stratigraphic section attains a thickness of 184 m at Margate area and 186 m at Port Edward area. The stratigraphy of Msikaba Formation is well exposed on the outcrops along the KwaZulu-Natal coastline. The stratigraphy is subdivided into 4 new members along Margate to Shelly beach section; namely Manaba Member, Uvongo Member, Mhlangeni Member and Shelly Beach Member from bottom upward. Twelve sedimentary facies were identified and the sedimentary facies were integrated into 4 facies association: Facies association 1 (Gmm+Sm) represents braided fluvial deposits, Facies association 2 (Gcm+St+Sp+Sl+Shb) represents tidal channel and tidal flat deposit, Facies association 3 (St+Sp+Sr+Sl) is result of shallow marine deposit and Facies association 4 (Sp+Sl+St+Sm) is a mixed marine and fluvial deposit. Each facies association represents a specific stratigraphic unit and were deposited in a specific sedimentary environment. Grain size analysis was conducted on seventeen thin sections and 500 grains were counted from each thin section. The sandstone grain size parameters of mean, sorting, skewness and kurtosis fell under the average of 0.75, 0.78, 0.4 and 1.2φ respectively. The results show that most of the grain size are coarse to medium grained throughout the study areas and sorting of the sandstones are moderate to poorly sorted. The cumulative frequency diagrams and bivariate plots show positive skewness and negative kurtosis, which indicate a high hydrodynamic environment. Modal composition analysis and petrography studies show that detrital components of the Msikaba Formation are dominated by monocrystalline quartz, feldspar (mostly K-feldspar) and lithic fragments of igneous and metamorphic rocks. The sandstones could be classified as quartz arenite, sub-arkosic sandstone and feldspathic litharenite; and the provenance analysis indicates that the sandstones were derived from craton interior, recycled or quartzose recycled sources which may derived from weathering and erosion of igneous and metamorphic rocks. Diagenetic processes of the Msikaba Formation have been passed through early, mid- and late diagenetic stages. Cementation, mineral conversion and compaction affect early diagenetic stage; authigenic minerals, quartz and feldspar overgrowth are presented in mid-diagenetic stage, whereas recrystallization, replacement, deformation and dissolution have been strongly affected late diagenetic stage. Microscopy, XRD and SEM-EDX studies have identified five types of cements including smectite clay, kaolinite, hematite, quartz and feldspar cements. Quartz cement, pore-filling and pore-lining clay are the major type of cements in the Msikaba Formation. Based on the lithology, sedimentary structure and facies variations, the Manaba Member was most probably deposited in a braided fluvial environment, the Uvongo Member was deposited in a tidal channel environment, the Mhlangeni Member was formed in shallow marine storm-influenced environment, whereas the Shelly Beach Member was represented mixed marine and fluvial environment. The sequence stratigraphy of Msikaba Formation constitutes a transgressive sequence from Manaba Member to Uvongo Member, whereas it ended as a regressive sequence from Mhlangeni Member to Shelly beach Member. The Msikaba Formation shows major differences with the Natal Group and Table Mountain Group (Cape Supergroup) in the lithology, stratigraphic sequence, sedimentary structures, facies system, palaeocurrent styles, fossil contents and depositional environments, which demonstrate that they are not the equivalent stratigraphic unit. Therefore, the Msikaba Formation is a separate, younger stratigraphic unit, and cannot correlate with the Natal Group and Table Mountain Group as suggested by previous researchers.
- Full Text:
- Date Issued: 2015
- Authors: Busakwe, Nolukholo Sinovuyo
- Date: 2015
- Subjects: Geology, Stratigraphic Sedimentology -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2501 , vital:27877
- Description: The Msikaba Formation is a Late Devonian fluvial and marine succession which outcrops from Hibberdene to Port Edward along the south coast of KwaZulu-Natal Province, South Africa. The Formation is composed of brownish conglomerate at the bottom and white-greyish quartz arenite sequence in the middle and mixed quartz-arenite with feldspathic sandstone in the upper sequence. Previous studies put more emphasis on the correlation of Msikaba Formation with the Natal Group and Cape Supergroup, whereas this study revised the stratigraphy, and also put new insight on the petrography, sedimentary facies, depositional environments and diagenesis of the Formation. The total stratigraphic section attains a thickness of 184 m at Margate area and 186 m at Port Edward area. The stratigraphy of Msikaba Formation is well exposed on the outcrops along the KwaZulu-Natal coastline. The stratigraphy is subdivided into 4 new members along Margate to Shelly beach section; namely Manaba Member, Uvongo Member, Mhlangeni Member and Shelly Beach Member from bottom upward. Twelve sedimentary facies were identified and the sedimentary facies were integrated into 4 facies association: Facies association 1 (Gmm+Sm) represents braided fluvial deposits, Facies association 2 (Gcm+St+Sp+Sl+Shb) represents tidal channel and tidal flat deposit, Facies association 3 (St+Sp+Sr+Sl) is result of shallow marine deposit and Facies association 4 (Sp+Sl+St+Sm) is a mixed marine and fluvial deposit. Each facies association represents a specific stratigraphic unit and were deposited in a specific sedimentary environment. Grain size analysis was conducted on seventeen thin sections and 500 grains were counted from each thin section. The sandstone grain size parameters of mean, sorting, skewness and kurtosis fell under the average of 0.75, 0.78, 0.4 and 1.2φ respectively. The results show that most of the grain size are coarse to medium grained throughout the study areas and sorting of the sandstones are moderate to poorly sorted. The cumulative frequency diagrams and bivariate plots show positive skewness and negative kurtosis, which indicate a high hydrodynamic environment. Modal composition analysis and petrography studies show that detrital components of the Msikaba Formation are dominated by monocrystalline quartz, feldspar (mostly K-feldspar) and lithic fragments of igneous and metamorphic rocks. The sandstones could be classified as quartz arenite, sub-arkosic sandstone and feldspathic litharenite; and the provenance analysis indicates that the sandstones were derived from craton interior, recycled or quartzose recycled sources which may derived from weathering and erosion of igneous and metamorphic rocks. Diagenetic processes of the Msikaba Formation have been passed through early, mid- and late diagenetic stages. Cementation, mineral conversion and compaction affect early diagenetic stage; authigenic minerals, quartz and feldspar overgrowth are presented in mid-diagenetic stage, whereas recrystallization, replacement, deformation and dissolution have been strongly affected late diagenetic stage. Microscopy, XRD and SEM-EDX studies have identified five types of cements including smectite clay, kaolinite, hematite, quartz and feldspar cements. Quartz cement, pore-filling and pore-lining clay are the major type of cements in the Msikaba Formation. Based on the lithology, sedimentary structure and facies variations, the Manaba Member was most probably deposited in a braided fluvial environment, the Uvongo Member was deposited in a tidal channel environment, the Mhlangeni Member was formed in shallow marine storm-influenced environment, whereas the Shelly Beach Member was represented mixed marine and fluvial environment. The sequence stratigraphy of Msikaba Formation constitutes a transgressive sequence from Manaba Member to Uvongo Member, whereas it ended as a regressive sequence from Mhlangeni Member to Shelly beach Member. The Msikaba Formation shows major differences with the Natal Group and Table Mountain Group (Cape Supergroup) in the lithology, stratigraphic sequence, sedimentary structures, facies system, palaeocurrent styles, fossil contents and depositional environments, which demonstrate that they are not the equivalent stratigraphic unit. Therefore, the Msikaba Formation is a separate, younger stratigraphic unit, and cannot correlate with the Natal Group and Table Mountain Group as suggested by previous researchers.
- Full Text:
- Date Issued: 2015
Synthesis and characterization of Ru(II) phenyl-3-indenylidene olefin metathesis type complexes
- Authors: Yalezo, Ntsikelelo
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11351 , http://hdl.handle.net/10353/d1021128
- Description: In this study, a series of Ru(II) phenyl-3-indenylidene complexes with general formula of [RuCl2(NHC)(Ind)(L)] (where L= triphenylphosphine, pyridine and NHC = five different types of N-heterocyclic carbene ligands), have been synthesized and characterized using FT-IR, UV-Vis, elementally analysis and melting/decomposition point. The N,N’-diarylimidazolinium chlorides have been used as N-heterocyclic carbene precursors and were synthesized from their corresponding N,N’-diarylformamidines and further characterized using 1H-NMR, 13C-NMR, FTIR and melting point determination. The infrared spectra of the N,N’-diarylimidazolinium chlorides show a quaternary nature (R2N=C+) with broad vibration band in region 3300-3400 cm-1. The disappearance of this vibration band in the infrared spectra of the ruthenium(II) complexes was used to confirm the coordination of the ligand to the ruthenium ions. The percentage analysis of carbon, hydrogen and nitrogen obtained corresponded with the calculated percentages of these atoms in the complexes with the slight difference of less than 1%. The electronic spectra of the complexes show three distinct absorption bands. The two bands are due to intraligand charge transfers transition assigned to π→π*, n→π* and third band is due to d-d transition, signifying the presence of the metal ion. The synthesized Ru(II) complexes did not show any of melting, however a change in colour was observed signifying the decomposition of the complexes.
- Full Text:
- Date Issued: 2015
- Authors: Yalezo, Ntsikelelo
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11351 , http://hdl.handle.net/10353/d1021128
- Description: In this study, a series of Ru(II) phenyl-3-indenylidene complexes with general formula of [RuCl2(NHC)(Ind)(L)] (where L= triphenylphosphine, pyridine and NHC = five different types of N-heterocyclic carbene ligands), have been synthesized and characterized using FT-IR, UV-Vis, elementally analysis and melting/decomposition point. The N,N’-diarylimidazolinium chlorides have been used as N-heterocyclic carbene precursors and were synthesized from their corresponding N,N’-diarylformamidines and further characterized using 1H-NMR, 13C-NMR, FTIR and melting point determination. The infrared spectra of the N,N’-diarylimidazolinium chlorides show a quaternary nature (R2N=C+) with broad vibration band in region 3300-3400 cm-1. The disappearance of this vibration band in the infrared spectra of the ruthenium(II) complexes was used to confirm the coordination of the ligand to the ruthenium ions. The percentage analysis of carbon, hydrogen and nitrogen obtained corresponded with the calculated percentages of these atoms in the complexes with the slight difference of less than 1%. The electronic spectra of the complexes show three distinct absorption bands. The two bands are due to intraligand charge transfers transition assigned to π→π*, n→π* and third band is due to d-d transition, signifying the presence of the metal ion. The synthesized Ru(II) complexes did not show any of melting, however a change in colour was observed signifying the decomposition of the complexes.
- Full Text:
- Date Issued: 2015
Synthesis, characterisation and evaluation of functionalized Lignocelluloses-clay nanocomposites for organic pollutant removal from water
- Authors: Mafukidze, Donovan M
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11356 , http://hdl.handle.net/10353/d1021296
- Description: PMPSgLig-NaMMT nanocomposites were prepared from methacryloxypropyltrimethoxysilane (MPS), lignocellulose and montmorillonite clay. The potential enhancement of organic pollutant adsorption capabilities of PMPSgLig-NaMMT nanocomposite from water through functionalization was investigated. PMPSgLig-NaMMT was functionalized by esterification and etherification using different methods so as to increase the surface hydrophobicity of the material and hence improve its compatibility with the target pollutants. Specific chemical routes specially tailored for PMPSgLig-NaMMT were established for functionalization mostly based on the common esterification (Fischer esterification) and etherification (Williamson‟s etherification) reactions. In the functionalization methods, factors such as pH environment, nanocomposite composition, nature of functionalization moiety, and use of or absence of solvents and their variations were studied. FT-IR, XRD, SEM and TGA were used to characterize the synthesized and functionalized nanoadsorbents. The techniques showed successful functionalization via esterification and etherification methods albeit to different extents, with clear retention of the material‟s original structure though there were signs of degradation with some methods. Characterization was supported by adsorption studies to validate implications and draw conclusions. The use of 1,10-phenathroline as a model organic pollutant in water in the adsorption studies showed that adsorbents conformed to monolayer adsorption following pseudo-second order kinetics for adsorption of organic pollutants accurately represented. Most importantly the studies revealed the significant impact of the nanocomposite composition on the overall absorbent performance. Adsorption studies also showed that functionalization via esterification methods gave rise to better adsorbents.
- Full Text:
- Date Issued: 2015
- Authors: Mafukidze, Donovan M
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Chemistry)
- Identifier: vital:11356 , http://hdl.handle.net/10353/d1021296
- Description: PMPSgLig-NaMMT nanocomposites were prepared from methacryloxypropyltrimethoxysilane (MPS), lignocellulose and montmorillonite clay. The potential enhancement of organic pollutant adsorption capabilities of PMPSgLig-NaMMT nanocomposite from water through functionalization was investigated. PMPSgLig-NaMMT was functionalized by esterification and etherification using different methods so as to increase the surface hydrophobicity of the material and hence improve its compatibility with the target pollutants. Specific chemical routes specially tailored for PMPSgLig-NaMMT were established for functionalization mostly based on the common esterification (Fischer esterification) and etherification (Williamson‟s etherification) reactions. In the functionalization methods, factors such as pH environment, nanocomposite composition, nature of functionalization moiety, and use of or absence of solvents and their variations were studied. FT-IR, XRD, SEM and TGA were used to characterize the synthesized and functionalized nanoadsorbents. The techniques showed successful functionalization via esterification and etherification methods albeit to different extents, with clear retention of the material‟s original structure though there were signs of degradation with some methods. Characterization was supported by adsorption studies to validate implications and draw conclusions. The use of 1,10-phenathroline as a model organic pollutant in water in the adsorption studies showed that adsorbents conformed to monolayer adsorption following pseudo-second order kinetics for adsorption of organic pollutants accurately represented. Most importantly the studies revealed the significant impact of the nanocomposite composition on the overall absorbent performance. Adsorption studies also showed that functionalization via esterification methods gave rise to better adsorbents.
- Full Text:
- Date Issued: 2015
Synthesis, characterization & application of visible light responsive nitrogen doped Tio2 and copolymer-grafted asymmetric membranes with ozonolysis for water treatment
- Authors: Mungondori, Henry H
- Date: 2015
- Language: English
- Type: Thesis , Doctoral , PhD (Chemistry)
- Identifier: vital:11350 , http://hdl.handle.net/10353/d1020257
- Description: The use of titanium dioxide for the photo-catalytic removal of organic, inorganic, and microbial pollutants from natural water and wastewater has been considered a very promising technique. The aim of this study was to prepare nitrogen doped titanium dioxide, immobilize it on asymmetric polymeric membranes of poly (methacrylic acid) grafted onto poly (vinylidene difluoride) (PVDF) blended with poly (acrylonitrile) (PAN), and evaluate the photo-catalytic, antimicrobial, and antifouling properties of the membranes. Nitrogen doped titanium dioxide (N-TiO2) nano-particles were prepared by a low temperature sol gel synthesis technique. The modification of TiO2 with nitrogen allows photo-sensitization of the photo-catalyst towards visible light utilization. The N-TiO2 nano-particles were characterized by fourier transform infrared spectroscopy (FT-IR), scanning x-ray photoelectron spectroscopy (SXPS), X-ray diffraction analysis (XRD), diffuse reflectance spectroscopy (DRS), Brunauer Emmett Teller (BET) surface area analysis, and transmission electron microscopy (TEM). The characterizations revealed the presence of the expected functional groups and confirmed successful doping and that the product was visible light responsive. Novel poly (methacrylic acid) grafted onto poly (vinylidene difluoride)/ poly (acrylonitrile) (PMAA-g-PVDF/ PAN) asymmetric membranes were prepared by the dry-wet phase inversion technique. The poly (methacrylic acid) (PMAA) side chains where grafted onto an activated PVDF backbone by reversible addition fragmentation chain transfer (RAFT) polymerization. The photo-catalytic membranes were generated by blending N-TiO2 with the polymer solution before casting the membranes. The membranes were characterized by FT-IR, nuclear magnetic resonance spectroscopy (NMR), scanning electron microscopy (SEM), and thermo-gravimetric analysis (TGA). FT-IR and NMR analyses confirmed successful grafting of MAA chains onto PVDF while SEM confirmed the successful preparation of membranes with asymmetric structure. The efficacy of the photo-catalytic asymmetric membranes was evaluated on the removal of herbicides from synthetic water. Bentazon was easily degraded while atrazine and paraquat were recalcitrant and proved difficult to degrade. The best results were observed with 3 % N-TiO2-PMAA-g-PVDF/ PAN asymmetric membranes on the photo-degradation of bentazon, atrazine and paraquat in water. Significant enhancement in the photo-degradation of the three herbicides was observed when photo-catalytic degradation was coupled with ozonation. Liquid chromatography-mass spectrometry (LC-MS) analysis confirmed the presence of a degradation by-product during the photo-catalytic degradation of bentazon. The photo-catalytic membranes were also evaluated on the photo-catalytic reduction of heavy metals Pb2+ and Fe3+ in water, and the best results were obtained using 1 % N-TiO2-PMAA-g-PVDF/ PAN and 1 % N-TiO2-PAN asymmetric membranes. All prepared photo-catalytic membranes where capable of completely inactivating E. coli ATCC 8739 within 120 minutes of exposure and inactivation rate increased with increasing N-TiO2 photo-catalyst loading. However, there was an indication from the results obtained that N-TiO2 supported on PMAA-g-PVDF/ PAN showed a higher inactivation rate of E. coli ATCC 8739 compared to N-TiO2-PAN and N-TiO2-PVDF membranes. The 1 % N-TiO2-PMAA-g-PVDF/ PAN membranes gave the highest pure water flux (421.83 L/m2h). This increase (PVDF = 30.50 L/m2h, PAN = 73.85 L/m2h) in pure water flux is owedb to PMAA grafting as well as addition of N-TiO2. These modifications resulted in an increased membrane surface hydrophilicity, which promoted permeation of pure water through the membrane structure. A high bovine serum albumin (BSA) rejection (76.5 %) was noted and can be attributed to steric hindrance brought about by PMAA side chains which prevented the bulky BSA molecules from attaching to the membrane surface for PMAA-g-PVDF/ PAN membranes. However, the supporting porous sub-layer of an asymmetric membrane seemed to play a very important role in the overall permeability of a membrane. PVDF membranes are highly hydrophobic hence they gave a very low pure water flux.
- Full Text:
- Date Issued: 2015
- Authors: Mungondori, Henry H
- Date: 2015
- Language: English
- Type: Thesis , Doctoral , PhD (Chemistry)
- Identifier: vital:11350 , http://hdl.handle.net/10353/d1020257
- Description: The use of titanium dioxide for the photo-catalytic removal of organic, inorganic, and microbial pollutants from natural water and wastewater has been considered a very promising technique. The aim of this study was to prepare nitrogen doped titanium dioxide, immobilize it on asymmetric polymeric membranes of poly (methacrylic acid) grafted onto poly (vinylidene difluoride) (PVDF) blended with poly (acrylonitrile) (PAN), and evaluate the photo-catalytic, antimicrobial, and antifouling properties of the membranes. Nitrogen doped titanium dioxide (N-TiO2) nano-particles were prepared by a low temperature sol gel synthesis technique. The modification of TiO2 with nitrogen allows photo-sensitization of the photo-catalyst towards visible light utilization. The N-TiO2 nano-particles were characterized by fourier transform infrared spectroscopy (FT-IR), scanning x-ray photoelectron spectroscopy (SXPS), X-ray diffraction analysis (XRD), diffuse reflectance spectroscopy (DRS), Brunauer Emmett Teller (BET) surface area analysis, and transmission electron microscopy (TEM). The characterizations revealed the presence of the expected functional groups and confirmed successful doping and that the product was visible light responsive. Novel poly (methacrylic acid) grafted onto poly (vinylidene difluoride)/ poly (acrylonitrile) (PMAA-g-PVDF/ PAN) asymmetric membranes were prepared by the dry-wet phase inversion technique. The poly (methacrylic acid) (PMAA) side chains where grafted onto an activated PVDF backbone by reversible addition fragmentation chain transfer (RAFT) polymerization. The photo-catalytic membranes were generated by blending N-TiO2 with the polymer solution before casting the membranes. The membranes were characterized by FT-IR, nuclear magnetic resonance spectroscopy (NMR), scanning electron microscopy (SEM), and thermo-gravimetric analysis (TGA). FT-IR and NMR analyses confirmed successful grafting of MAA chains onto PVDF while SEM confirmed the successful preparation of membranes with asymmetric structure. The efficacy of the photo-catalytic asymmetric membranes was evaluated on the removal of herbicides from synthetic water. Bentazon was easily degraded while atrazine and paraquat were recalcitrant and proved difficult to degrade. The best results were observed with 3 % N-TiO2-PMAA-g-PVDF/ PAN asymmetric membranes on the photo-degradation of bentazon, atrazine and paraquat in water. Significant enhancement in the photo-degradation of the three herbicides was observed when photo-catalytic degradation was coupled with ozonation. Liquid chromatography-mass spectrometry (LC-MS) analysis confirmed the presence of a degradation by-product during the photo-catalytic degradation of bentazon. The photo-catalytic membranes were also evaluated on the photo-catalytic reduction of heavy metals Pb2+ and Fe3+ in water, and the best results were obtained using 1 % N-TiO2-PMAA-g-PVDF/ PAN and 1 % N-TiO2-PAN asymmetric membranes. All prepared photo-catalytic membranes where capable of completely inactivating E. coli ATCC 8739 within 120 minutes of exposure and inactivation rate increased with increasing N-TiO2 photo-catalyst loading. However, there was an indication from the results obtained that N-TiO2 supported on PMAA-g-PVDF/ PAN showed a higher inactivation rate of E. coli ATCC 8739 compared to N-TiO2-PAN and N-TiO2-PVDF membranes. The 1 % N-TiO2-PMAA-g-PVDF/ PAN membranes gave the highest pure water flux (421.83 L/m2h). This increase (PVDF = 30.50 L/m2h, PAN = 73.85 L/m2h) in pure water flux is owedb to PMAA grafting as well as addition of N-TiO2. These modifications resulted in an increased membrane surface hydrophilicity, which promoted permeation of pure water through the membrane structure. A high bovine serum albumin (BSA) rejection (76.5 %) was noted and can be attributed to steric hindrance brought about by PMAA side chains which prevented the bulky BSA molecules from attaching to the membrane surface for PMAA-g-PVDF/ PAN membranes. However, the supporting porous sub-layer of an asymmetric membrane seemed to play a very important role in the overall permeability of a membrane. PVDF membranes are highly hydrophobic hence they gave a very low pure water flux.
- Full Text:
- Date Issued: 2015
The classification performance of Bayesian Networks Classifiers: a case study of detecting Denial of Service (DoS) attacks in cloud computing environments
- Authors: Moyo, Lindani
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Computer Science)
- Identifier: vital:11405 , http://hdl.handle.net/10353/d1021327
- Description: In this research we propose a Bayesian networks approach as a promissory classification technique for detecting malicious traffic due to Denial of Service (DoS) attacks. Bayesian networks have been applied in numerous fields fraught with uncertainty and they have been proved to be successful. They have excelled tremendously in classification tasks i.e. text analysis, medical diagnoses and environmental modeling and management. The detection of DoS attacks has received tremendous attention in the field of network security. DoS attacks have proved to be detrimental and are the bane of cloud computing environments. Large business enterprises have been/or are still unwilling to outsource their businesses to the cloud due to the intrusive tendencies that the cloud platforms are prone too. To make use of Bayesian networks it is imperative to understand the ―ecosystem‖ of factors that are external to modeling the Bayesian algorithm itself. Understanding these factors have proven to result in comparable improvement in classification performance beyond the augmentation of the existing algorithms. Literature provides discussions pertaining to the factors that impact the classification capability, however it was noticed that the effects of the factors are not universal, they tend to be unique for each domain problem. This study investigates the effects of modeling parameters on the classification performance of Bayesian network classifiers in detecting DoS attacks in cloud platforms. We analyzed how structural complexity, training sample size, the choice of discretization method and lastly the score function both individually and collectively impact the performance of classifying between normal and DoS attacks on the cloud. To study the aforementioned factors, we conducted a series of experiments in detecting live DoS attacks launched against a deployed cloud and thereafter examined the classification performance in terms of accuracy of different classes of Bayesian networks. NSL-KDD dataset was used as our training set. We used ownCloud software to deploy our cloud platform. To launch DoS attacks, we used hping3 hacker friendly utility. A live packet capture was used as our test set. WEKA version 3.7.12 was used for our experiments. Our results show that the progression in model complexity improves the classification performance. This is attributed to the increase in the number of attribute correlations. Also the size of the training sample size proved to improve classification ability. Our findings noted that the choice of discretization algorithm does matter in the quest for optimal classification performance. Furthermore, our results indicate that the choice of scoring function does not affect the classification performance of Bayesian networks. Conclusions drawn from this research are prescriptive particularly for a novice machine learning researcher with valuable recommendations that ensure optimal classification performance of Bayesian networks classifiers.
- Full Text:
- Date Issued: 2015
- Authors: Moyo, Lindani
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc (Computer Science)
- Identifier: vital:11405 , http://hdl.handle.net/10353/d1021327
- Description: In this research we propose a Bayesian networks approach as a promissory classification technique for detecting malicious traffic due to Denial of Service (DoS) attacks. Bayesian networks have been applied in numerous fields fraught with uncertainty and they have been proved to be successful. They have excelled tremendously in classification tasks i.e. text analysis, medical diagnoses and environmental modeling and management. The detection of DoS attacks has received tremendous attention in the field of network security. DoS attacks have proved to be detrimental and are the bane of cloud computing environments. Large business enterprises have been/or are still unwilling to outsource their businesses to the cloud due to the intrusive tendencies that the cloud platforms are prone too. To make use of Bayesian networks it is imperative to understand the ―ecosystem‖ of factors that are external to modeling the Bayesian algorithm itself. Understanding these factors have proven to result in comparable improvement in classification performance beyond the augmentation of the existing algorithms. Literature provides discussions pertaining to the factors that impact the classification capability, however it was noticed that the effects of the factors are not universal, they tend to be unique for each domain problem. This study investigates the effects of modeling parameters on the classification performance of Bayesian network classifiers in detecting DoS attacks in cloud platforms. We analyzed how structural complexity, training sample size, the choice of discretization method and lastly the score function both individually and collectively impact the performance of classifying between normal and DoS attacks on the cloud. To study the aforementioned factors, we conducted a series of experiments in detecting live DoS attacks launched against a deployed cloud and thereafter examined the classification performance in terms of accuracy of different classes of Bayesian networks. NSL-KDD dataset was used as our training set. We used ownCloud software to deploy our cloud platform. To launch DoS attacks, we used hping3 hacker friendly utility. A live packet capture was used as our test set. WEKA version 3.7.12 was used for our experiments. Our results show that the progression in model complexity improves the classification performance. This is attributed to the increase in the number of attribute correlations. Also the size of the training sample size proved to improve classification ability. Our findings noted that the choice of discretization algorithm does matter in the quest for optimal classification performance. Furthermore, our results indicate that the choice of scoring function does not affect the classification performance of Bayesian networks. Conclusions drawn from this research are prescriptive particularly for a novice machine learning researcher with valuable recommendations that ensure optimal classification performance of Bayesian networks classifiers.
- Full Text:
- Date Issued: 2015