A framework for high speed lexical classification of malicious URLs
- Authors: Egan, Shaun Peter
- Date: 2014
- Subjects: Internet -- Security measures -- Research , Uniform Resource Identifiers -- Security measures -- Research , Neural networks (Computer science) -- Research , Computer security -- Research , Computer crimes -- Prevention , Phishing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4696 , http://hdl.handle.net/10962/d1011933 , Internet -- Security measures -- Research , Uniform Resource Identifiers -- Security measures -- Research , Neural networks (Computer science) -- Research , Computer security -- Research , Computer crimes -- Prevention , Phishing
- Description: Phishing attacks employ social engineering to target end-users, with the goal of stealing identifying or sensitive information. This information is used in activities such as identity theft or financial fraud. During a phishing campaign, attackers distribute URLs which; along with false information, point to fraudulent resources in an attempt to deceive users into requesting the resource. These URLs are made obscure through the use of several techniques which make automated detection difficult. Current methods used to detect malicious URLs face multiple problems which attackers use to their advantage. These problems include: the time required to react to new attacks; shifts in trends in URL obfuscation and usability problems caused by the latency incurred by the lookups required by these approaches. A new method of identifying malicious URLs using Artificial Neural Networks (ANNs) has been shown to be effective by several authors. The simple method of classification performed by ANNs result in very high classification speeds with little impact on usability. Samples used for the training, validation and testing of these ANNs are gathered from Phishtank and Open Directory. Words selected from the different sections of the samples are used to create a `Bag-of-Words (BOW)' which is used as a binary input vector indicating the presence of a word for a given sample. Twenty additional features which measure lexical attributes of the sample are used to increase classification accuracy. A framework that is capable of generating these classifiers in an automated fashion is implemented. These classifiers are automatically stored on a remote update distribution service which has been built to supply updates to classifier implementations. An example browser plugin is created and uses ANNs provided by this service. It is both capable of classifying URLs requested by a user in real time and is able to block these requests. The framework is tested in terms of training time and classification accuracy. Classification speed and the effectiveness of compression algorithms on the data required to distribute updates is tested. It is concluded that it is possible to generate these ANNs in a frequent fashion, and in a method that is small enough to distribute easily. It is also shown that classifications are made at high-speed with high-accuracy, resulting in little impact on usability.
- Full Text:
- Date Issued: 2014
- Authors: Egan, Shaun Peter
- Date: 2014
- Subjects: Internet -- Security measures -- Research , Uniform Resource Identifiers -- Security measures -- Research , Neural networks (Computer science) -- Research , Computer security -- Research , Computer crimes -- Prevention , Phishing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4696 , http://hdl.handle.net/10962/d1011933 , Internet -- Security measures -- Research , Uniform Resource Identifiers -- Security measures -- Research , Neural networks (Computer science) -- Research , Computer security -- Research , Computer crimes -- Prevention , Phishing
- Description: Phishing attacks employ social engineering to target end-users, with the goal of stealing identifying or sensitive information. This information is used in activities such as identity theft or financial fraud. During a phishing campaign, attackers distribute URLs which; along with false information, point to fraudulent resources in an attempt to deceive users into requesting the resource. These URLs are made obscure through the use of several techniques which make automated detection difficult. Current methods used to detect malicious URLs face multiple problems which attackers use to their advantage. These problems include: the time required to react to new attacks; shifts in trends in URL obfuscation and usability problems caused by the latency incurred by the lookups required by these approaches. A new method of identifying malicious URLs using Artificial Neural Networks (ANNs) has been shown to be effective by several authors. The simple method of classification performed by ANNs result in very high classification speeds with little impact on usability. Samples used for the training, validation and testing of these ANNs are gathered from Phishtank and Open Directory. Words selected from the different sections of the samples are used to create a `Bag-of-Words (BOW)' which is used as a binary input vector indicating the presence of a word for a given sample. Twenty additional features which measure lexical attributes of the sample are used to increase classification accuracy. A framework that is capable of generating these classifiers in an automated fashion is implemented. These classifiers are automatically stored on a remote update distribution service which has been built to supply updates to classifier implementations. An example browser plugin is created and uses ANNs provided by this service. It is both capable of classifying URLs requested by a user in real time and is able to block these requests. The framework is tested in terms of training time and classification accuracy. Classification speed and the effectiveness of compression algorithms on the data required to distribute updates is tested. It is concluded that it is possible to generate these ANNs in a frequent fashion, and in a method that is small enough to distribute easily. It is also shown that classifications are made at high-speed with high-accuracy, resulting in little impact on usability.
- Full Text:
- Date Issued: 2014
A study of electrospun nanofibers and diatomaceous earth materials for the extraction of alkaloids, flavonoids and aromatic amines in various matrices
- Mothibedi, Kediemetse (Kedimetse)
- Authors: Mothibedi, Kediemetse (Kedimetse)
- Date: 2013 , 2013-04-07
- Subjects: Nanofibers , Electrospinning , Sorbents , Extraction (Chemistry) , Alkaloids , Flavonoids , Amines , Matrices , Goldenseal , Ginkgo , Dyes and dyeing -- Chemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4288 , http://hdl.handle.net/10962/d1003052 , Nanofibers , Electrospinning , Sorbents , Extraction (Chemistry) , Alkaloids , Flavonoids , Amines , Matrices , Goldenseal , Ginkgo , Dyes and dyeing -- Chemistry
- Description: The thesis explored the use of different sorbent materials in solid phase extraction method development. The methods included the use of the polymeric Agilent Bond Elut Plexa solid phase extraction and electrospun polymer-silica composite sorbents for clean-up and preconcentration. Sample clean-up for alkaloids (hydrastine and berberine) in goldenseal, Hydrastis canadensis and flavonoids (quercetin, kaempferol and isorhamnetin) in Ginkgo biloba was achieved using Bond Elut Plexa SPE sorbent. Clean-up of flavonoids in Ginkgo biloba was also achieved using electrospun polymer-silica composite (polystyrene-silica, polyacrylonitrile-silica and nylon 6-silica) sorbents. All analysis of flavonoids and alkaloids was carried out using an Agilent 1200 Series HPLC coupled with a diode array detector. Good peak separation was achieved in less than 6 min employing an Agilent ZORBAX Eclipse Plus C18 column (4.6 x 75 mm, 3.5 μm) at 35⁰C. The mobile phases employed were 0.1% phosphoric acid/methanol gradient and 0.5% phosphoric acid/methanol (40:60) for alkaloids and flavonoids respectively. The calibration curves exhibited linearity up to 120 μg mL⁻¹ with correlation coefficients of more than 0.9980. The recoveries ranged from 73-109% with relative standard deviation of less than 5% for all analytes. Agilent Chem Elut supported liquid extraction was employed for the development of a sample preparation method for the determination of 24 banned aromatic amines from azo dyes in textile following the EU standard method EN 14362-1:2003 (E) and the Chinese standard method GB/T 17592-2006. The supported liquid extraction was effective in the extraction of the aromatic amines from textile (cotton, wool and polyester/cotton [80%:20%]). Most of the recoveries obtained were conforming to the minimum requirements set in the EN 14362-1:2003 (E) standard method and the relative standard deviations were less than 15%. Good peak separation was obtained within 70 min run time using the Agilent Zorbax SB-Phenyl column (4.6 mm x 250 mm, 5-micron) or the Agilent DB-35 MS (J & W) (30 m x 0.25 mm, 0.25 μm film thickness. It was demonstrated that the polymeric Agilent Bond Elut Plexa, electrospun nanofibers and diatomaceous earth were effective in extraction of alkaloids, flavonoids and aromatic amines in different matrices. The developed methods were simple, rapid and reproducible.
- Full Text:
- Date Issued: 2013
- Authors: Mothibedi, Kediemetse (Kedimetse)
- Date: 2013 , 2013-04-07
- Subjects: Nanofibers , Electrospinning , Sorbents , Extraction (Chemistry) , Alkaloids , Flavonoids , Amines , Matrices , Goldenseal , Ginkgo , Dyes and dyeing -- Chemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4288 , http://hdl.handle.net/10962/d1003052 , Nanofibers , Electrospinning , Sorbents , Extraction (Chemistry) , Alkaloids , Flavonoids , Amines , Matrices , Goldenseal , Ginkgo , Dyes and dyeing -- Chemistry
- Description: The thesis explored the use of different sorbent materials in solid phase extraction method development. The methods included the use of the polymeric Agilent Bond Elut Plexa solid phase extraction and electrospun polymer-silica composite sorbents for clean-up and preconcentration. Sample clean-up for alkaloids (hydrastine and berberine) in goldenseal, Hydrastis canadensis and flavonoids (quercetin, kaempferol and isorhamnetin) in Ginkgo biloba was achieved using Bond Elut Plexa SPE sorbent. Clean-up of flavonoids in Ginkgo biloba was also achieved using electrospun polymer-silica composite (polystyrene-silica, polyacrylonitrile-silica and nylon 6-silica) sorbents. All analysis of flavonoids and alkaloids was carried out using an Agilent 1200 Series HPLC coupled with a diode array detector. Good peak separation was achieved in less than 6 min employing an Agilent ZORBAX Eclipse Plus C18 column (4.6 x 75 mm, 3.5 μm) at 35⁰C. The mobile phases employed were 0.1% phosphoric acid/methanol gradient and 0.5% phosphoric acid/methanol (40:60) for alkaloids and flavonoids respectively. The calibration curves exhibited linearity up to 120 μg mL⁻¹ with correlation coefficients of more than 0.9980. The recoveries ranged from 73-109% with relative standard deviation of less than 5% for all analytes. Agilent Chem Elut supported liquid extraction was employed for the development of a sample preparation method for the determination of 24 banned aromatic amines from azo dyes in textile following the EU standard method EN 14362-1:2003 (E) and the Chinese standard method GB/T 17592-2006. The supported liquid extraction was effective in the extraction of the aromatic amines from textile (cotton, wool and polyester/cotton [80%:20%]). Most of the recoveries obtained were conforming to the minimum requirements set in the EN 14362-1:2003 (E) standard method and the relative standard deviations were less than 15%. Good peak separation was obtained within 70 min run time using the Agilent Zorbax SB-Phenyl column (4.6 mm x 250 mm, 5-micron) or the Agilent DB-35 MS (J & W) (30 m x 0.25 mm, 0.25 μm film thickness. It was demonstrated that the polymeric Agilent Bond Elut Plexa, electrospun nanofibers and diatomaceous earth were effective in extraction of alkaloids, flavonoids and aromatic amines in different matrices. The developed methods were simple, rapid and reproducible.
- Full Text:
- Date Issued: 2013
Sequence and structural investigation of the nonribosomal peptide synthetases of Bacillus atrophaeus UCMB 5137(63Z)
- Authors: Ryan, Candice Nancy
- Date: 2013 , 2013-04-19
- Subjects: Bacillus (Bacteria) , Peptides--Synthesis , Antibiotics , Drug resistance in microorganisms , Amino acids , Phytopathogenic microorganisms , Trees--Phylogeny , Ligases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3891 , http://hdl.handle.net/10962/d1003057 , Bacillus (Bacteria) , Peptides--Synthesis , Antibiotics , Drug resistance in microorganisms , Amino acids , Phytopathogenic microorganisms , Trees--Phylogeny , Ligases
- Description: Due to increased plant resistance to the existing antibiotics produced, there is a need to develop alternatives. Nonribosomal peptides (NRPs) are important plant phytopathogens synthesized by nonribosomal peptide synthetases (NRPSs). In this study, a newly sequenced Bacillus strain Bacillus atrophaeus UCMB 5137 (63Z), found to have increased phytopathogenic activity, was investigated to gain insights to the possible reason behind this activity. NRPS modules were identified using a novel script that can act on unannotated, raw DNA sequences. The Structure Based Sequence Analysis Webserver was used to identify the amino acids incorporated into the final NRP, which were compared to the NRP database. Five NRPSs were found within the strain; fengycin/plipstatin, mycosubtilin, surfactin, bacillibactin and bacitracin. Some of the modules usually present for these NRPSs were not present in the test strain and only a few modules were found. A phylogenetic study was carried out and the topologies of the trees showed that genes were not transferred horizontally. It did, however, lead to the hypothesis that different NRPS genes are under different adaptive evolutionary pressures. Only slight conformational changes between L and D-conformation of amino acids were seen between the test and neighboring strains. All of the linker and terminal regions of synthetases were found to exhibit a large amount of conservation overall. Homology modeling was performed on the test strain on selected modules, TE and A-domains of fengycin and mycosubtilin synthetases. TE-domains between the different synthetases are different and specific for the NRP they facilitate release for. The NRPS from which the A-domain originates also influences substrate specificity as well as the module in which the A-domain occurs within the NRPS. Binding pockets of A-domains of differing substrate specificity were compared. Future work will include; refinement of the models and docking studies within the A-domain binding pocket. , Microsoft� Word 2010 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2013
- Authors: Ryan, Candice Nancy
- Date: 2013 , 2013-04-19
- Subjects: Bacillus (Bacteria) , Peptides--Synthesis , Antibiotics , Drug resistance in microorganisms , Amino acids , Phytopathogenic microorganisms , Trees--Phylogeny , Ligases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3891 , http://hdl.handle.net/10962/d1003057 , Bacillus (Bacteria) , Peptides--Synthesis , Antibiotics , Drug resistance in microorganisms , Amino acids , Phytopathogenic microorganisms , Trees--Phylogeny , Ligases
- Description: Due to increased plant resistance to the existing antibiotics produced, there is a need to develop alternatives. Nonribosomal peptides (NRPs) are important plant phytopathogens synthesized by nonribosomal peptide synthetases (NRPSs). In this study, a newly sequenced Bacillus strain Bacillus atrophaeus UCMB 5137 (63Z), found to have increased phytopathogenic activity, was investigated to gain insights to the possible reason behind this activity. NRPS modules were identified using a novel script that can act on unannotated, raw DNA sequences. The Structure Based Sequence Analysis Webserver was used to identify the amino acids incorporated into the final NRP, which were compared to the NRP database. Five NRPSs were found within the strain; fengycin/plipstatin, mycosubtilin, surfactin, bacillibactin and bacitracin. Some of the modules usually present for these NRPSs were not present in the test strain and only a few modules were found. A phylogenetic study was carried out and the topologies of the trees showed that genes were not transferred horizontally. It did, however, lead to the hypothesis that different NRPS genes are under different adaptive evolutionary pressures. Only slight conformational changes between L and D-conformation of amino acids were seen between the test and neighboring strains. All of the linker and terminal regions of synthetases were found to exhibit a large amount of conservation overall. Homology modeling was performed on the test strain on selected modules, TE and A-domains of fengycin and mycosubtilin synthetases. TE-domains between the different synthetases are different and specific for the NRP they facilitate release for. The NRPS from which the A-domain originates also influences substrate specificity as well as the module in which the A-domain occurs within the NRPS. Binding pockets of A-domains of differing substrate specificity were compared. Future work will include; refinement of the models and docking studies within the A-domain binding pocket. , Microsoft� Word 2010 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2013
Anthropogenic threats to resident and dispersing African wild dogs west and south of the Kruger National Park, South Africa
- Watermeyer, Jessica Patricia
- Authors: Watermeyer, Jessica Patricia
- Date: 2012
- Subjects: African wild dog -- South Africa -- Kruger National Park , African wild dog -- Effect of human beings on -- South Africa -- Kruger National Park , African wild dog -- Behavior -- South Africa -- Kruger National Park , Endangered species -- South Africa -- Kruger National Park , African wild dog -- Dispersal -- South Africa -- Kruger National Park , African wild dog -- Conservation -- South Africa -- Kruger National Park , Animal populations -- Estimates -- South Africa -- Kruger National Park
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5636 , http://hdl.handle.net/10962/d1005318 , African wild dog -- South Africa -- Kruger National Park , African wild dog -- Effect of human beings on -- South Africa -- Kruger National Park , African wild dog -- Behavior -- South Africa -- Kruger National Park , Endangered species -- South Africa -- Kruger National Park , African wild dog -- Dispersal -- South Africa -- Kruger National Park , African wild dog -- Conservation -- South Africa -- Kruger National Park , Animal populations -- Estimates -- South Africa -- Kruger National Park
- Description: African wild dog Lycaon pictus populations are declining and the species is listed as Endangered by the IUCN. The Kruger National Park (KNP) is home to the only viable population of wild dogs in South Africa, but census results reveal consistently low numbers since the late 1990s. Wild dogs display wide-ranging behaviour and it is possible that the species might frequently use unprotected lands adjacent to the KNP. However, very little is known about wild dog movements beyond the boundaries of the KNP, and whether or not adjacent land owners are tolerant of the species. Significantly, threats along the boundaries may have negative consequences for the KNP population. This research investigated the dispersal habits of wild dogs beyond the western and southern boundaries of the KNP, and gathered information on human tolerance, and anthropogenic threats in an area of mixed land use. The land west of the KNP presented the best prospect for wild dog range expansion. The wild dog packs operating outside the KNP had smaller home ranges and less home range overlap than the packs operating within the KNP. In addition, my data suggested that the development of conservancies and the formation of ecotourism-based land use practices would be beneficial for wild dog conservation. Failed wild dog dispersals due to snaring and human persecution could threaten the genetic stability and persistence of the KNP population. Therefore, raising awareness and an understanding of the plight of wild dogs is important for improving land owner perception and tolerance outside of protected areas. The rapidly increasing human population continues to infringe on protected lands and fragment landscapes, thus cooperation from individual land owners is vital for the conservation of free-ranging large carnivores.
- Full Text:
- Date Issued: 2012
- Authors: Watermeyer, Jessica Patricia
- Date: 2012
- Subjects: African wild dog -- South Africa -- Kruger National Park , African wild dog -- Effect of human beings on -- South Africa -- Kruger National Park , African wild dog -- Behavior -- South Africa -- Kruger National Park , Endangered species -- South Africa -- Kruger National Park , African wild dog -- Dispersal -- South Africa -- Kruger National Park , African wild dog -- Conservation -- South Africa -- Kruger National Park , Animal populations -- Estimates -- South Africa -- Kruger National Park
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5636 , http://hdl.handle.net/10962/d1005318 , African wild dog -- South Africa -- Kruger National Park , African wild dog -- Effect of human beings on -- South Africa -- Kruger National Park , African wild dog -- Behavior -- South Africa -- Kruger National Park , Endangered species -- South Africa -- Kruger National Park , African wild dog -- Dispersal -- South Africa -- Kruger National Park , African wild dog -- Conservation -- South Africa -- Kruger National Park , Animal populations -- Estimates -- South Africa -- Kruger National Park
- Description: African wild dog Lycaon pictus populations are declining and the species is listed as Endangered by the IUCN. The Kruger National Park (KNP) is home to the only viable population of wild dogs in South Africa, but census results reveal consistently low numbers since the late 1990s. Wild dogs display wide-ranging behaviour and it is possible that the species might frequently use unprotected lands adjacent to the KNP. However, very little is known about wild dog movements beyond the boundaries of the KNP, and whether or not adjacent land owners are tolerant of the species. Significantly, threats along the boundaries may have negative consequences for the KNP population. This research investigated the dispersal habits of wild dogs beyond the western and southern boundaries of the KNP, and gathered information on human tolerance, and anthropogenic threats in an area of mixed land use. The land west of the KNP presented the best prospect for wild dog range expansion. The wild dog packs operating outside the KNP had smaller home ranges and less home range overlap than the packs operating within the KNP. In addition, my data suggested that the development of conservancies and the formation of ecotourism-based land use practices would be beneficial for wild dog conservation. Failed wild dog dispersals due to snaring and human persecution could threaten the genetic stability and persistence of the KNP population. Therefore, raising awareness and an understanding of the plight of wild dogs is important for improving land owner perception and tolerance outside of protected areas. The rapidly increasing human population continues to infringe on protected lands and fragment landscapes, thus cooperation from individual land owners is vital for the conservation of free-ranging large carnivores.
- Full Text:
- Date Issued: 2012
An investigation into the design and implementation of an internet-scale network simulator
- Authors: Richter, John Peter Frank
- Date: 2009
- Subjects: Computer simulation , Computer network resources , Computer networks , Internet
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4597 , http://hdl.handle.net/10962/d1004840 , Computer simulation , Computer network resources , Computer networks , Internet
- Description: Simulation is a complex task with many research applications - chiey as a research tool, to test and evaluate hypothetical scenarios. Though many simulations execute similar operations and utilise similar data, there are few simulation frameworks or toolkits that allow researchers to rapidly develop their concepts. Those that are available to researchers are limited in scope, or use old technology that is no longer useful to modern researchers. As a result of this, many researchers build their own simulations without a framework, wasting time and resources on a system that could already cater for the majority of their simulation's requirements. In this work, a system is proposed for the creation of a scalable, dynamic-resolution network simulation framework that provides scalable scope for researchers, using modern technologies and languages. This framework should allow researchers to rapidly develop a broad range of semantically-rich simulations, without the necessity of superor grid-computers or clusters. Design and implementation are discussed and alternative network simulations are compared to the proposed framework. A series of simulations, focusing on malware, is run on an implementation of this framework, and the results are compared to expectations for the outcomes of those simulations. In conclusion, a critical review of the simulator is made, considering any extensions or shortcomings that need to be addressed.
- Full Text:
- Date Issued: 2009
- Authors: Richter, John Peter Frank
- Date: 2009
- Subjects: Computer simulation , Computer network resources , Computer networks , Internet
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4597 , http://hdl.handle.net/10962/d1004840 , Computer simulation , Computer network resources , Computer networks , Internet
- Description: Simulation is a complex task with many research applications - chiey as a research tool, to test and evaluate hypothetical scenarios. Though many simulations execute similar operations and utilise similar data, there are few simulation frameworks or toolkits that allow researchers to rapidly develop their concepts. Those that are available to researchers are limited in scope, or use old technology that is no longer useful to modern researchers. As a result of this, many researchers build their own simulations without a framework, wasting time and resources on a system that could already cater for the majority of their simulation's requirements. In this work, a system is proposed for the creation of a scalable, dynamic-resolution network simulation framework that provides scalable scope for researchers, using modern technologies and languages. This framework should allow researchers to rapidly develop a broad range of semantically-rich simulations, without the necessity of superor grid-computers or clusters. Design and implementation are discussed and alternative network simulations are compared to the proposed framework. A series of simulations, focusing on malware, is run on an implementation of this framework, and the results are compared to expectations for the outcomes of those simulations. In conclusion, a critical review of the simulator is made, considering any extensions or shortcomings that need to be addressed.
- Full Text:
- Date Issued: 2009
Estimating erosion of cretaceous-aged kimberlites in the Republic of South Africa through the examination of upper-crustal xenoliths
- Authors: Hanson, Emily Kate
- Date: 2007
- Subjects: Kimberlite -- South Africa , Igneous rocks -- Inclusions -- South Africa , Erosion -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4942 , http://hdl.handle.net/10962/d1005554 , Kimberlite -- South Africa , Igneous rocks -- Inclusions -- South Africa , Erosion -- South Africa
- Description: he estimation of post-emplacement kimberlite erosion in South Africa through the study of upper-crustal xenoliths is relatively unexplored; however the presence of these xenoliths has been recognized for well over 100 years. Post-emplacement erosion levels of a small number of South African kimberlite pipes have been inferred through the study of the degree of country-rock diagenesis, the depth of sill formation, the depth of the initiation of the diatreme and fission track studies. Through these studies, several estimates were proposed for the Group I Kimberley kimberlites. Although the 1400 m estimate of erosion remains widely accepted today, this estimate relies on the presence of Karoo-like basalt xenoliths in the Group I Kimberley kimberlites, as their presence proves that basalt existed in the Kimberley area when the kimberlites were emplaced. Basaltic xenoliths were described during the early stages of mining in Kimberley, though only one of these descriptions suggests that the ‘basaltic’ boulders correlate with the Karoo basalts. Because of the discrepancy between these early documentations of upper-crustal xenoliths and because the occurrence of Karoo-like basalt xenoliths in the Group I Kimberley kimberlites is under question, a re-investigation of the erosion levels and the upper crustal xenolith suites in South African, Cretaceous-aged kimberlites, including Melton Wold, Voorspoed, Roberts Victor, West End, Record Stone Quarry, Finsch, Markt, Frank Smith, Pampoenpoort, Uintjiesberg, Koffiefontein / Ebenheuyser, Monastery, Kimberley (Big Hole), Kamfersdam , Jagersfontein, Kaal Vallei, De Beers, Bultfontein, Lushof, Britstown Cluster, Hebron and Lovedale, was conducted. This study presents the analytical results for upper-crustal sandstone and basalt xenoliths collected from dumps, excavation pits and borehole core at the above-mentioned kimberlites, and demonstrates that they correlate with stratigraphic units of the Karoo Supergroup on the basis of mineral and geochemical compositions. These upper-crustal xenoliths are incorporated into kimberlites and down-rafted to levels below their stratigraphic position during kimberlite emplacement, consequently recording the broad stratigraphy into which each kimberlite is emplaced. Therefore, the Cretaceous lateral extent of the Karoo Supergroup is inferred and post-emplacement erosion estimated by reconstructing the stratigraphy based on upper-crustal xenolith suites for each kimberlite and calculating the total thickness of the now-eroded units. The distribution of sandstone xenoliths indicates that during the Cretaceous the lateral extent of the Dwyka, Ecca and Beaufort Groups encompassed all of the examined kimberlites, while the ‘Stormberg’ Group was constrained to an area outlined by the Voorspoed and Monastery kimberlites. Similarly, basalt xenoliths occur in all of the Group II and transitional (143 – 100 Ma) kimberlites but only in the Group I (90 – 74 Ma) kimberlites that lie within close proximity to the western outcrop margin of the outcrop area of the Drakensberg Group basalts (Lesotho Remnant), namely Monastery, Jagersfontein and Kaal Vallei. This trend implies an eastward-retreat of the inland erosion front of the Karoo basalts between 140 and 90 Ma and subsequent erosion of the underlying sedimentary units. It also suggests that a thicker succession of Karoo strata was present at the time of Group II and transitional kimberlite emplacement and that there has been more post-emplacement erosion in these kimberlites than the younger Group I kimberlites, except for Monastery, Jagersfontein and Kaal Vallei. Estimates are unique to each kimberlite as they are dependent on both stratigraphic location, elevation and present country rock, and range from approximately 1000 – 2500 m for the older kimberlites and less than 700 m to 1400 m for the younger kimberlites. Furthermore, the upper-crustal xenoliths found at the Group I Kimberley kimberlites and the coinciding trend of basalt erosion demonstrate that Karoo basalts were eroded from the Kimberley area by the time the Group I Kimberley kimberlites erupted (~85 Ma). Therefore, basalts are omitted from the Group I Kimberley kimberlites post-emplacement erosion estimate, and the upper Beaufort Group is considered the upper limit of the stratigraphy that was present at the time of the eruption of the Group I Kimberley pipes. Therefore, the erosion estimates decrease from a previous estimate of 1400 m down to 400 to 1100 m, where 850 m is considered a dependable intermediate estimate.
- Full Text:
- Date Issued: 2007
- Authors: Hanson, Emily Kate
- Date: 2007
- Subjects: Kimberlite -- South Africa , Igneous rocks -- Inclusions -- South Africa , Erosion -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4942 , http://hdl.handle.net/10962/d1005554 , Kimberlite -- South Africa , Igneous rocks -- Inclusions -- South Africa , Erosion -- South Africa
- Description: he estimation of post-emplacement kimberlite erosion in South Africa through the study of upper-crustal xenoliths is relatively unexplored; however the presence of these xenoliths has been recognized for well over 100 years. Post-emplacement erosion levels of a small number of South African kimberlite pipes have been inferred through the study of the degree of country-rock diagenesis, the depth of sill formation, the depth of the initiation of the diatreme and fission track studies. Through these studies, several estimates were proposed for the Group I Kimberley kimberlites. Although the 1400 m estimate of erosion remains widely accepted today, this estimate relies on the presence of Karoo-like basalt xenoliths in the Group I Kimberley kimberlites, as their presence proves that basalt existed in the Kimberley area when the kimberlites were emplaced. Basaltic xenoliths were described during the early stages of mining in Kimberley, though only one of these descriptions suggests that the ‘basaltic’ boulders correlate with the Karoo basalts. Because of the discrepancy between these early documentations of upper-crustal xenoliths and because the occurrence of Karoo-like basalt xenoliths in the Group I Kimberley kimberlites is under question, a re-investigation of the erosion levels and the upper crustal xenolith suites in South African, Cretaceous-aged kimberlites, including Melton Wold, Voorspoed, Roberts Victor, West End, Record Stone Quarry, Finsch, Markt, Frank Smith, Pampoenpoort, Uintjiesberg, Koffiefontein / Ebenheuyser, Monastery, Kimberley (Big Hole), Kamfersdam , Jagersfontein, Kaal Vallei, De Beers, Bultfontein, Lushof, Britstown Cluster, Hebron and Lovedale, was conducted. This study presents the analytical results for upper-crustal sandstone and basalt xenoliths collected from dumps, excavation pits and borehole core at the above-mentioned kimberlites, and demonstrates that they correlate with stratigraphic units of the Karoo Supergroup on the basis of mineral and geochemical compositions. These upper-crustal xenoliths are incorporated into kimberlites and down-rafted to levels below their stratigraphic position during kimberlite emplacement, consequently recording the broad stratigraphy into which each kimberlite is emplaced. Therefore, the Cretaceous lateral extent of the Karoo Supergroup is inferred and post-emplacement erosion estimated by reconstructing the stratigraphy based on upper-crustal xenolith suites for each kimberlite and calculating the total thickness of the now-eroded units. The distribution of sandstone xenoliths indicates that during the Cretaceous the lateral extent of the Dwyka, Ecca and Beaufort Groups encompassed all of the examined kimberlites, while the ‘Stormberg’ Group was constrained to an area outlined by the Voorspoed and Monastery kimberlites. Similarly, basalt xenoliths occur in all of the Group II and transitional (143 – 100 Ma) kimberlites but only in the Group I (90 – 74 Ma) kimberlites that lie within close proximity to the western outcrop margin of the outcrop area of the Drakensberg Group basalts (Lesotho Remnant), namely Monastery, Jagersfontein and Kaal Vallei. This trend implies an eastward-retreat of the inland erosion front of the Karoo basalts between 140 and 90 Ma and subsequent erosion of the underlying sedimentary units. It also suggests that a thicker succession of Karoo strata was present at the time of Group II and transitional kimberlite emplacement and that there has been more post-emplacement erosion in these kimberlites than the younger Group I kimberlites, except for Monastery, Jagersfontein and Kaal Vallei. Estimates are unique to each kimberlite as they are dependent on both stratigraphic location, elevation and present country rock, and range from approximately 1000 – 2500 m for the older kimberlites and less than 700 m to 1400 m for the younger kimberlites. Furthermore, the upper-crustal xenoliths found at the Group I Kimberley kimberlites and the coinciding trend of basalt erosion demonstrate that Karoo basalts were eroded from the Kimberley area by the time the Group I Kimberley kimberlites erupted (~85 Ma). Therefore, basalts are omitted from the Group I Kimberley kimberlites post-emplacement erosion estimate, and the upper Beaufort Group is considered the upper limit of the stratigraphy that was present at the time of the eruption of the Group I Kimberley pipes. Therefore, the erosion estimates decrease from a previous estimate of 1400 m down to 400 to 1100 m, where 850 m is considered a dependable intermediate estimate.
- Full Text:
- Date Issued: 2007
The scrum-down on brain damage effects of cumulative mild head injury in rugby: a comparison of group mean scores between national rugby players and non-contact sport controls
- Authors: Finkelstein, Melissa
- Date: 2000
- Subjects: Sports injuries , Head -- Wounds and injuries , Sports injuries -- Psychological aspects , Neuropsychological tests , Rugby football injuries
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:2976 , http://hdl.handle.net/10962/d1002485 , Sports injuries , Head -- Wounds and injuries , Sports injuries -- Psychological aspects , Neuropsychological tests , Rugby football injuries
- Description: The present study comprises the second phase of a larger and ongoing research study investigating the brain damage effects of cumulative mild head injury in rugby. The purpose of this study was to determine whether cumulative mild head injury sustained in the game of rugby would cause brain injury as evidenced by impaired performance on sensitive neuropsychological tests. Participants were Springbok professional rugby players (n = 26), Under 21 rugby players (n = 19), and a non-contact sport control of national hockey players (n = 21). Comparisons of performance were carried out across a spectrum of neuropsychological tests for the three rugby groups (Total Rugby, Springbok Rugby, and Under 21 Rugby) versus the performance of the non-contact sport control group (Hockey Control), as well as comparisons of performance f9r the subgroups of Rugby Forwards versus Rugby Backs. Comparisons revealed a consistent pattern of poorer performance across all rugby groups relative to the performance of the controls on tests highly sensitive to the effects of diffuse brain damage. Within rugby group comparisons (Forwards versus Backs) showed significantly poorer performance for Total Rugby Forwards and Springbok Rugby Forwards relative to the performance of the respective Total Rugby Backs and Springbok Rugby Backs on sensitive, as well as on somewhat less sensitive, neuropsychological tests. The performance of Under 21 Rugby Forwards relative to Under 21 Rugby Backs demonstrated similar trends. Brain reserve capacity theory was used as a conceptual basis for discussing the implications of these findings.
- Full Text:
- Date Issued: 2000
- Authors: Finkelstein, Melissa
- Date: 2000
- Subjects: Sports injuries , Head -- Wounds and injuries , Sports injuries -- Psychological aspects , Neuropsychological tests , Rugby football injuries
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:2976 , http://hdl.handle.net/10962/d1002485 , Sports injuries , Head -- Wounds and injuries , Sports injuries -- Psychological aspects , Neuropsychological tests , Rugby football injuries
- Description: The present study comprises the second phase of a larger and ongoing research study investigating the brain damage effects of cumulative mild head injury in rugby. The purpose of this study was to determine whether cumulative mild head injury sustained in the game of rugby would cause brain injury as evidenced by impaired performance on sensitive neuropsychological tests. Participants were Springbok professional rugby players (n = 26), Under 21 rugby players (n = 19), and a non-contact sport control of national hockey players (n = 21). Comparisons of performance were carried out across a spectrum of neuropsychological tests for the three rugby groups (Total Rugby, Springbok Rugby, and Under 21 Rugby) versus the performance of the non-contact sport control group (Hockey Control), as well as comparisons of performance f9r the subgroups of Rugby Forwards versus Rugby Backs. Comparisons revealed a consistent pattern of poorer performance across all rugby groups relative to the performance of the controls on tests highly sensitive to the effects of diffuse brain damage. Within rugby group comparisons (Forwards versus Backs) showed significantly poorer performance for Total Rugby Forwards and Springbok Rugby Forwards relative to the performance of the respective Total Rugby Backs and Springbok Rugby Backs on sensitive, as well as on somewhat less sensitive, neuropsychological tests. The performance of Under 21 Rugby Forwards relative to Under 21 Rugby Backs demonstrated similar trends. Brain reserve capacity theory was used as a conceptual basis for discussing the implications of these findings.
- Full Text:
- Date Issued: 2000
Exploitation of the bait organism Upogebia africana (Crustacea: Anomura) in the Knysna estuary
- Authors: Cretchley, Robyn
- Date: 1997
- Subjects: Upogebia africana -- South Africa -- Knysna , Mud shrimps -- South Africa -- Knysna , Fishing baits -- South Africa -- Knysna
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5691 , http://hdl.handle.net/10962/d1005377 , Upogebia africana -- South Africa -- Knysna , Mud shrimps -- South Africa -- Knysna , Fishing baits -- South Africa -- Knysna
- Description: In South African estuaries the anomuran mud prawn, Upogebia africana (Ortmann), is the main organism exploited as bait by recreational and subsistence anglers. In the Knysna estuary, three groups of bait collectors were identified on the basis of their source of income: subsistence fishermen who rely on bait-collecting and fishing for their income, supplementary anglers who catch fish to supplement their income and leisure anglers who draw no income from fishing. Two groups were identified based on the methods used: lelsure anglers who collect bait using a prawn pusher or pump and fish using a fishing rod and tackle, and non-leisure anglers who collect mud prawns using tin cans and fish with handlines. The hypothesis was erected that bait-collecting does not affect the U africana populations in the Knysna estuary. The approach adopted was to assess the distribution, density, population structure and reproductive patterns of the bait stock and to estimate the intensity of bait collection, to test the validity of the hypothesis. U africana has an extensive distribution, occupying 62 % of the available intertidal area of the Knysna estuary. Mud prawns have a broad intertidal distribution from the high water level (Spartina zone) to the shallow subtidal. The density, biomass and population structure of the mud prawns vary significantly with distance up the estuary and with tidal height on each shore. The Invertebrate Reserve supports very low densities of U africana (x = 11.7 m⁻²), whereas a relatively inaccessible centre bank in the middle reaches of the estuary appears to be a very effective natural mud prawn reserve as it supports the highest densities (x = 176.5m⁻²). The mud prawn stock of the estuary is estimated to be 2.19 x 108 prawns (82.7 tonnes dry mass). The numbers of bait collectors present per mudbank is highest on public holidays (x = 34) and higher during the summer holidays (x = 16) than during the winter (x = 4). A total of 1.858 x 106 U africana or 700.53 kg (dry mass) are removed by bait collectors annually from the 6 popular bait-collecting sites studied. This represents 8.49 % of the mud prawn stocks at these sites and 0.85 % of the entire estuary stock. 85 % of the U africana taken as bait annually, is removed by the 77.12 % of bait collectors who are non-leisure anglers. Recreational or leisure anglers are responsible for removing 14.2 %. The reproduction of female U africana in the Knysna estuary is seasonal and occurs from late July to April. There is evidence that this breeding season consists of two merging breeding cycles. The largest percentage (63 %) of ovigerous females is found in the middle reaches of the Knysna estuary at the Oyster Bank where the highest numbers of stage 1 larvae (165 m⁻³) are released. Larvae were exported from the estuary on the crepuscular ebb tide with peaks in abundance of nearly 1500 m⁻³ in November 1995 and January 1996. Although numbers caught are not significantly higher, larvae are nearly twice as abundant on crepuscular neap tides following a new moon (waxing quarter) than on those following a full moon (waning quarter). Recruitment of juvenile U africana to populations in the estuary was highest in December (45 m⁻²) and decreased over the summer. The highest numbers of recruits (31 m⁻²) were found at those sites closest to the mouth or on the main channel. Recruitment to the Leisure Isle and Thesens sites which are intensively exploited by bait collectors is high (20 - 32 m⁻²). The number of juveniles recruiting to U africana populations is estimated to be four times as high as the numbers of mud prawns taken by bait collectors. Legal methods of bait collection used in the Knysna estuary by the majority of anglers appear to cause minimal sediment disturbance and are not likely to affect the associated infauna. Illegal bait-collecting methods are however highly destructive and must be prohibited. It is concluded that the null hypothesis is acceptable, as mud prawn stocks of the Knysna estuary are not over-exploited and appear to be naturally regulated. The recruitment rate of juvenile U africana is estimated to be sufficiently high to sustain the present levels of exploitation.
- Full Text:
- Date Issued: 1997
- Authors: Cretchley, Robyn
- Date: 1997
- Subjects: Upogebia africana -- South Africa -- Knysna , Mud shrimps -- South Africa -- Knysna , Fishing baits -- South Africa -- Knysna
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5691 , http://hdl.handle.net/10962/d1005377 , Upogebia africana -- South Africa -- Knysna , Mud shrimps -- South Africa -- Knysna , Fishing baits -- South Africa -- Knysna
- Description: In South African estuaries the anomuran mud prawn, Upogebia africana (Ortmann), is the main organism exploited as bait by recreational and subsistence anglers. In the Knysna estuary, three groups of bait collectors were identified on the basis of their source of income: subsistence fishermen who rely on bait-collecting and fishing for their income, supplementary anglers who catch fish to supplement their income and leisure anglers who draw no income from fishing. Two groups were identified based on the methods used: lelsure anglers who collect bait using a prawn pusher or pump and fish using a fishing rod and tackle, and non-leisure anglers who collect mud prawns using tin cans and fish with handlines. The hypothesis was erected that bait-collecting does not affect the U africana populations in the Knysna estuary. The approach adopted was to assess the distribution, density, population structure and reproductive patterns of the bait stock and to estimate the intensity of bait collection, to test the validity of the hypothesis. U africana has an extensive distribution, occupying 62 % of the available intertidal area of the Knysna estuary. Mud prawns have a broad intertidal distribution from the high water level (Spartina zone) to the shallow subtidal. The density, biomass and population structure of the mud prawns vary significantly with distance up the estuary and with tidal height on each shore. The Invertebrate Reserve supports very low densities of U africana (x = 11.7 m⁻²), whereas a relatively inaccessible centre bank in the middle reaches of the estuary appears to be a very effective natural mud prawn reserve as it supports the highest densities (x = 176.5m⁻²). The mud prawn stock of the estuary is estimated to be 2.19 x 108 prawns (82.7 tonnes dry mass). The numbers of bait collectors present per mudbank is highest on public holidays (x = 34) and higher during the summer holidays (x = 16) than during the winter (x = 4). A total of 1.858 x 106 U africana or 700.53 kg (dry mass) are removed by bait collectors annually from the 6 popular bait-collecting sites studied. This represents 8.49 % of the mud prawn stocks at these sites and 0.85 % of the entire estuary stock. 85 % of the U africana taken as bait annually, is removed by the 77.12 % of bait collectors who are non-leisure anglers. Recreational or leisure anglers are responsible for removing 14.2 %. The reproduction of female U africana in the Knysna estuary is seasonal and occurs from late July to April. There is evidence that this breeding season consists of two merging breeding cycles. The largest percentage (63 %) of ovigerous females is found in the middle reaches of the Knysna estuary at the Oyster Bank where the highest numbers of stage 1 larvae (165 m⁻³) are released. Larvae were exported from the estuary on the crepuscular ebb tide with peaks in abundance of nearly 1500 m⁻³ in November 1995 and January 1996. Although numbers caught are not significantly higher, larvae are nearly twice as abundant on crepuscular neap tides following a new moon (waxing quarter) than on those following a full moon (waning quarter). Recruitment of juvenile U africana to populations in the estuary was highest in December (45 m⁻²) and decreased over the summer. The highest numbers of recruits (31 m⁻²) were found at those sites closest to the mouth or on the main channel. Recruitment to the Leisure Isle and Thesens sites which are intensively exploited by bait collectors is high (20 - 32 m⁻²). The number of juveniles recruiting to U africana populations is estimated to be four times as high as the numbers of mud prawns taken by bait collectors. Legal methods of bait collection used in the Knysna estuary by the majority of anglers appear to cause minimal sediment disturbance and are not likely to affect the associated infauna. Illegal bait-collecting methods are however highly destructive and must be prohibited. It is concluded that the null hypothesis is acceptable, as mud prawn stocks of the Knysna estuary are not over-exploited and appear to be naturally regulated. The recruitment rate of juvenile U africana is estimated to be sufficiently high to sustain the present levels of exploitation.
- Full Text:
- Date Issued: 1997
Investigations into the larval rearing of two South African sparid species
- Authors: Davis, Jerome Adam
- Date: 1997
- Subjects: Sparidae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5293 , http://hdl.handle.net/10962/d1005138 , Sparidae
- Description: The most significant bottleneck to the development of marine finfish culture is a reliable production of juveniles for growout. This is due to the small size at hatch and delicate nature of the pelagic larvae produced by most commercially desirable species. However, over the last 30 years, improved larviculture techniques have been developed to the extent that many species are being successfully cultured worldwide. These techniques were applied to two endemic species as a preliminary step towards establishing marine finfish aquaculture in South Africa. Adult roman Chtysoblephus laticeps and carpenter Argyrozona argyrozona (Pisces: Sparidae) were caught in the Tsitsikamma National Park. Both species responded to injection with pituitary extract, HCG and LHRHa, and were succesfully stripped up to 48 hours after injection. Fish were stripped twice, the second stripping producing better quality eggs. Chyrysoblephus laticeps also spawned naturally after injection with LHRHa. The fertilised eggs were incubated and the larvae reared in a fully recirculating seawater system. One batch of A. argyrozona and three batches of C. laticeps were reared through metamorphosis on a diet of enriched rotifers and Anemia, and inert foods, following commonly used rearing procedures. Both species followed developmental patterns of other cultured larvae, displaying typical critical stages; high mortalities at first-feeding and cannibalism from 26-30 days after hatch resulted in survival rates ranging from 0.1-0.5%. Growth, survival, size of gape at first-feeding, and ease of weaning onto an inert diet of C. laticeps was comparable to other species being reared for the first time, indicating some potential as a candidate species. The numbers of A. argyrozona larvae reared were insufficient to make comparisons with other studies. The adults also proved to be susceptible to physical damage while in captivity and were, therefore, considered unsuitable for aquaculture. The thesis describes the spawning procedure, the systems developed and the larval rearing process. The critical stages of first-feeding, swim bladder inflation, settlement and cannibalism are discussed and the development of the larvae described. The ontogeny of both species is described in detail. Both species displayed typical sparid developmental patterns, but differed with respect to pigmentation, head spination and morphometrics.
- Full Text:
- Date Issued: 1997
- Authors: Davis, Jerome Adam
- Date: 1997
- Subjects: Sparidae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5293 , http://hdl.handle.net/10962/d1005138 , Sparidae
- Description: The most significant bottleneck to the development of marine finfish culture is a reliable production of juveniles for growout. This is due to the small size at hatch and delicate nature of the pelagic larvae produced by most commercially desirable species. However, over the last 30 years, improved larviculture techniques have been developed to the extent that many species are being successfully cultured worldwide. These techniques were applied to two endemic species as a preliminary step towards establishing marine finfish aquaculture in South Africa. Adult roman Chtysoblephus laticeps and carpenter Argyrozona argyrozona (Pisces: Sparidae) were caught in the Tsitsikamma National Park. Both species responded to injection with pituitary extract, HCG and LHRHa, and were succesfully stripped up to 48 hours after injection. Fish were stripped twice, the second stripping producing better quality eggs. Chyrysoblephus laticeps also spawned naturally after injection with LHRHa. The fertilised eggs were incubated and the larvae reared in a fully recirculating seawater system. One batch of A. argyrozona and three batches of C. laticeps were reared through metamorphosis on a diet of enriched rotifers and Anemia, and inert foods, following commonly used rearing procedures. Both species followed developmental patterns of other cultured larvae, displaying typical critical stages; high mortalities at first-feeding and cannibalism from 26-30 days after hatch resulted in survival rates ranging from 0.1-0.5%. Growth, survival, size of gape at first-feeding, and ease of weaning onto an inert diet of C. laticeps was comparable to other species being reared for the first time, indicating some potential as a candidate species. The numbers of A. argyrozona larvae reared were insufficient to make comparisons with other studies. The adults also proved to be susceptible to physical damage while in captivity and were, therefore, considered unsuitable for aquaculture. The thesis describes the spawning procedure, the systems developed and the larval rearing process. The critical stages of first-feeding, swim bladder inflation, settlement and cannibalism are discussed and the development of the larvae described. The ontogeny of both species is described in detail. Both species displayed typical sparid developmental patterns, but differed with respect to pigmentation, head spination and morphometrics.
- Full Text:
- Date Issued: 1997
A novel adjuvant : polymerised serum albumin beads
- Authors: Dewar, John Barr
- Date: 1985
- Subjects: Antigens , Serum albumin
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4104 , http://hdl.handle.net/10962/d1011146 , Antigens , Serum albumin
- Description: Lee, T. et al (1981) proposed the encapsulation of hormones such as progesterone into serum albumin beads, such that their in vivo proteolysis would allow a gradual release of hormone at low levels, for extended hormone action. It was proposed, in the Department of Microbiology, Rhodes University, to replace the hormone component of the above bead formulation, with virus as antigen, in the development of a vaccine. Beads optimally crosslinked at 1% final glutaraldehyde concentration, containing Nodamura virus, were shown to promote an adjuvant effect in vivo, analogous to the release of antigen from Freund's Complete Adjuvant (FCA), so that extended immunostimulation resulted. It was shown that soluble antigen promoted a short-lived primary immune response, peaking around day 25 following inoculation. Antigen presented in beads, on the other hand, initially elicited a low humoral response, but this response gradually increased up to a peak around day 110 post inoculation, before decreasing. No apparent adverse side-effects were noted following inoculation of antigen-containing serum albumin beads, compared to necrosis following antigen in FCA inoculation, supporting the proposal of using albumin homotypic for the test inoculee animal, so that the beads would themselves be non-immunogenic and would merely act as a vehicle in the vaccine formulation. The indirect enzyme-linked immunosorbent assay (ELISA) was used to monitor the humoral response to antigen following inoculation. Results showed that covalent crosslinking of albumin in the formation of the beads did not promote immunogenicity on the part of the chemically altered albumin. The ELISA test was used to indicate the kinetics of the IgG response to Nodamura virus when presented in formulations such as: Freely soluble virus or its subunit; soluble intact virus inactivated by treatment with glutaraldehyde; intact virus entrapped in serum albumin beads cross; linked at different percentage final glutaraldehyde concentrations and also virus subunit prepared in albumin beads. The presence of virus-neutral ising antibodies was noted in serum obtained from rabbits inoculated with virus entrapped in albumin beads. Virus infectivity, titrated in mice, showed protection against virus challenge after incubation of virus with serum obtained above.
- Full Text:
- Date Issued: 1985
- Authors: Dewar, John Barr
- Date: 1985
- Subjects: Antigens , Serum albumin
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4104 , http://hdl.handle.net/10962/d1011146 , Antigens , Serum albumin
- Description: Lee, T. et al (1981) proposed the encapsulation of hormones such as progesterone into serum albumin beads, such that their in vivo proteolysis would allow a gradual release of hormone at low levels, for extended hormone action. It was proposed, in the Department of Microbiology, Rhodes University, to replace the hormone component of the above bead formulation, with virus as antigen, in the development of a vaccine. Beads optimally crosslinked at 1% final glutaraldehyde concentration, containing Nodamura virus, were shown to promote an adjuvant effect in vivo, analogous to the release of antigen from Freund's Complete Adjuvant (FCA), so that extended immunostimulation resulted. It was shown that soluble antigen promoted a short-lived primary immune response, peaking around day 25 following inoculation. Antigen presented in beads, on the other hand, initially elicited a low humoral response, but this response gradually increased up to a peak around day 110 post inoculation, before decreasing. No apparent adverse side-effects were noted following inoculation of antigen-containing serum albumin beads, compared to necrosis following antigen in FCA inoculation, supporting the proposal of using albumin homotypic for the test inoculee animal, so that the beads would themselves be non-immunogenic and would merely act as a vehicle in the vaccine formulation. The indirect enzyme-linked immunosorbent assay (ELISA) was used to monitor the humoral response to antigen following inoculation. Results showed that covalent crosslinking of albumin in the formation of the beads did not promote immunogenicity on the part of the chemically altered albumin. The ELISA test was used to indicate the kinetics of the IgG response to Nodamura virus when presented in formulations such as: Freely soluble virus or its subunit; soluble intact virus inactivated by treatment with glutaraldehyde; intact virus entrapped in serum albumin beads cross; linked at different percentage final glutaraldehyde concentrations and also virus subunit prepared in albumin beads. The presence of virus-neutral ising antibodies was noted in serum obtained from rabbits inoculated with virus entrapped in albumin beads. Virus infectivity, titrated in mice, showed protection against virus challenge after incubation of virus with serum obtained above.
- Full Text:
- Date Issued: 1985
A critical study of the determination of molybdenum in plant material
- Authors: Gore, William Tompson
- Date: 1961
- Subjects: Molybdenum , Plants -- Analysis , Spectrophotometry , Polarography
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4477 , http://hdl.handle.net/10962/d1012071 , Molybdenum , Plants -- Analysis , Spectrophotometry , Polarography
- Description: 1. Polarographic and spectrophotometric methods for the determination of molybdenum were reviewed. 2. The inclusion of salicylaldoxine in several supporting electrolytes was examined with a view to developing a polarographic procedure, suitable for routine analyses, which did not necessitate a preliminary time-consuming separation stage. A stable molybdenum wave was obtained from an electrolyte having a composition similar to the test solution obtained after the wet digestion of plant material. The height of the wave was found to be, over an optimum range, independent of the reagent concentrations. The wave was however distorted by a maximum, which rendered it unsuitable for quantitative analytical application. 3. The spectrophotometric procedure for molybdenum using thiocyanate is virtually specific and was examined critically. Modifications were found to improve the sensitivity of the procedure, and the stability of the chromatic compound. 4. The modified spectrophotometric procedure is recommended for the routine determination of molybdenum in plant material.
- Full Text:
- Date Issued: 1961
- Authors: Gore, William Tompson
- Date: 1961
- Subjects: Molybdenum , Plants -- Analysis , Spectrophotometry , Polarography
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4477 , http://hdl.handle.net/10962/d1012071 , Molybdenum , Plants -- Analysis , Spectrophotometry , Polarography
- Description: 1. Polarographic and spectrophotometric methods for the determination of molybdenum were reviewed. 2. The inclusion of salicylaldoxine in several supporting electrolytes was examined with a view to developing a polarographic procedure, suitable for routine analyses, which did not necessitate a preliminary time-consuming separation stage. A stable molybdenum wave was obtained from an electrolyte having a composition similar to the test solution obtained after the wet digestion of plant material. The height of the wave was found to be, over an optimum range, independent of the reagent concentrations. The wave was however distorted by a maximum, which rendered it unsuitable for quantitative analytical application. 3. The spectrophotometric procedure for molybdenum using thiocyanate is virtually specific and was examined critically. Modifications were found to improve the sensitivity of the procedure, and the stability of the chromatic compound. 4. The modified spectrophotometric procedure is recommended for the routine determination of molybdenum in plant material.
- Full Text:
- Date Issued: 1961
A critical study of methods for the determination of zinc in soils and plant materials
- Authors: Eve, Desmond John
- Date: 1955
- Subjects: Soils -- Zinc content , Soils -- Analysis , Plants -- Analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4468 , http://hdl.handle.net/10962/d1011770 , Soils -- Zinc content , Soils -- Analysis , Plants -- Analysis
- Description: Although it is only fairly recently that the importance of trace elements in plant nutrition has been established, enormous advances have been made in this field of research and numerous publications of considerable scientific and economic importance, dealing with the subject, have appeared. The physiological functions of zinc in promoting plant growth have not all been satisfactorily identified as yet. There are indications, however, that zinc acts as a catalyst or regulator in plant metabolism. It appears too, that the element plays some role in chlorophyll formation. Zinc deficiency is associated with leaf chlorosis and a general collapse of v ital processes. The analysis of leaves and soils has become an essential part of the study of the nutritional diseases of plants and it is imperative that accurate and reliable methods of analysis should be available. Intro. p. 1.
- Full Text:
- Date Issued: 1955
- Authors: Eve, Desmond John
- Date: 1955
- Subjects: Soils -- Zinc content , Soils -- Analysis , Plants -- Analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4468 , http://hdl.handle.net/10962/d1011770 , Soils -- Zinc content , Soils -- Analysis , Plants -- Analysis
- Description: Although it is only fairly recently that the importance of trace elements in plant nutrition has been established, enormous advances have been made in this field of research and numerous publications of considerable scientific and economic importance, dealing with the subject, have appeared. The physiological functions of zinc in promoting plant growth have not all been satisfactorily identified as yet. There are indications, however, that zinc acts as a catalyst or regulator in plant metabolism. It appears too, that the element plays some role in chlorophyll formation. Zinc deficiency is associated with leaf chlorosis and a general collapse of v ital processes. The analysis of leaves and soils has become an essential part of the study of the nutritional diseases of plants and it is imperative that accurate and reliable methods of analysis should be available. Intro. p. 1.
- Full Text:
- Date Issued: 1955
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