Invasion status and potential impacts of bluegill Lepomis macrochirus Rafinesque, 1819 in the Kariega River, Eastern Cape, South Africa
- Authors: Ndaleni, Phumza Malibongwe
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7586 , vital:21276
- Description: The impact of alien invasive species is one of the greatest threats to biodiversity globally. All of the major drainages of South Africa are invaded by non-native fishes, yet little information is available on their impact. This thesis focusses on providing a better understanding of the potential impacts of bluegill Lepomis macrochirus Rafinesque, 1819, a species introduced into South Africa from the USA in 1938. The study assesses the distribution, establishment success and feeding ecology of L. macrochirus in an invaded South African River system in order to better understand and document its potential impacts. Specifically; this thesis (1) assesses the distribution and relative abundance of L. macrochirus in the Kariega System of the Eastern Cape, (2) determines the diet of the species in one of the major impoundments of the system, and (3) uses an experimental comparative functional response approach to assess whether this species has heightened predatory capabilities when compared with fishes with which it cooccurs. Ninety-six sites in the Kariega River system were sampled from the headwaters down to the estuary. Small native fish species (Enteromius anoplus and Enteromius pallidus) occurred mostly in the upper reaches, while in the middle and lower reaches, the centrarchid alien largemouth bass Micropterus salmoides and bluegill L. mocrochirus dominated. There was overlap between the centrarchids and introduced banded tilapia Tilapia sparrmanii and southern mouthbrooder Pseudocrenilabrus philander, but never with small-bodied native species. The stomach contents of L. macrochirus were examined during winter and summer and prey were identified to family level. Crustaceans and insects were an important component in their diet, but in summer fish eggs were common. Comparisons of bluegill diet with published literature indicated that there was potential for competition with largemouth bass, banded tilapia and southern mouthbrooder. Feeding experiments were conducted to compare the functional responses of these four species using a common prey item. Banded tilapia had significantly lower attack rates than the other species with no significant difference observed in other species. Bluegill has a similar impact to that of banded tilapia and southern mouthbrooder, but lower than that of largemouth bass. Results of the present study highlight that L. macrochirus introduced into dams will likely result in both upstream and downstream invasion of river systems. It is likely that this species does not, however, have as much of a predatory impact as M. salmoides in that its predatory capacity is relatively reduced and more comparable to South African native cichlids. These results are discussed within the context of invasion success/failure in other regions of southern Africa.
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- Date Issued: 2017
Perceptions of rural households about the role and effect of biogas production on rural household income in Raymond Mhlaba Local Municipality
- Authors: Ngcobo, Lindiwe
- Date: 2017
- Subjects: Biomass energy -- South Africa -- Eastern Cape Renewable energy sources -- South Africa -- Eastern Cape Sustainable living -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/4694 , vital:28494
- Description: Rural development efforts to reduce poverty and enhance food security and generally improve livelihoods in developing countries continue to be constrained by high energy cost. For that reason, renewable energy has been identified as a possible panacea to fill this gap. Renewable energy is cheaper, more accessible and environmentally sustainable and promotes inclusivity. Biogas is a renewable energy that is readily available and easy to use by poor rural households. The use of biogas digesters among households in rural areas of developing countries is a well-known technology. The potential for biogas in these areas has been demonstrated and a strong economic case has been made. However, its adoption and use have been lower than expectations possibly as result of non-economic considerations, including social issues about which rural people hold different perceptions. Perceptions of rural households are important because they influence the behaviour to a large extent. Since limited access to affordable energy in rural areas has encouraged government and private organisations to initiate biogas projects to overcome the challenge, it is important to ascertain the factors that affect attitudes towards the technology. The present study sought to explore perceptions of rural households about biogas production towards rural household income in the Raymond Mhlaba Local Municipality. Specifically, this research investigated the state of biogas project being implemented by the University of Fort Hare’s Institute of Technology (FHIT), the perceptions of respondents towards biogas production and determine the contribution of biogas consumption to rural income. The study also aimed to identify the factors affecting the adoption of biogas production in the study area. The study was carried out in Melani village in Raymond Mhlaba Local Municipality in the Eastern Cape Province of South Africa and employed survey data obtained from 48 households who were enumerated to identify their perceptions on biogas production, with special emphasis on the role and effect contributed to rural income of Melani village. The study employed a cross-sectional research design and purposive sampling technique was used in data collection. Data were collected and captured in Excel and then analysed using the statistical package for social sciences (SPSS) Version 24 Descriptive statistics was used to examine socio-economic characteristics of households and state of biogas production in the area, Bivariate correlation analysis was used to determine the relationships among the key elements of perceptions of household towards biogas adoption, binary logistic model was used to estimate factors influencing adoption of biogas technology by households. The results show that women were dominant for both adopters and non-adopters of biogas. The majority of households were young with mean age of 40 years while for non-adopters were 65 years old on average. The results showed high levels of literacy amongst household adopters. Majority of the households for both adopters and non-adopters of biogas technology were married and unemployed and household size ranged from one to five persons, with social grants being dominant source of income. The bivariate correlation analysis suggests a positive effect of green pepper production and livestock ownership on biogas technology adoption. Age and level of education were negatively correlated with adoption of biogas. The cross tabulation analysis suggests that water scarcity, lack of knowledge about biogas technology, cattle ownership, lack of maintenance and repairing, flooded biogas digesters during rainy season are negatively associated with the uptake of biogas technology. The empirical results from binary logistic model suggest that land size was the key determinant of adoption behaviour towards biogas technology while age of the household head, source of income and level of education may have a negative influence on adoption of biogas technology. Based on the findings highlighted above, the study recommends strategies to encourage households to adopt biogas technology.
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- Date Issued: 2017
PyMORESANE: A Pythonic and CUDA-accelerated implementation of the MORESANE deconvolution algorithm
- Authors: Kenyon, Jonathan
- Date: 2015
- Subjects: Radio astronomy , Imaging systems in astronomy , MOdel REconstruction by Synthesis-ANalysis Estimators (MORESANE)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5563 , http://hdl.handle.net/10962/d1020098
- Description: The inadequacies of the current generation of deconvolution algorithms are rapidly becoming apparent as new, more sensitive radio interferometers are constructed. In light of these inadequacies, there is renewed interest in the field of deconvolution. Many new algorithms are being developed using the mathematical framework of compressed sensing. One such technique, MORESANE, has recently been shown to be a powerful tool for the recovery of faint difuse emission from synthetic and simulated data. However, the original implementation is not well-suited to large problem sizes due to its computational complexity. Additionally, its use of proprietary software prevents it from being freely distributed and used. This has motivated the development of a freely available Python implementation, PyMORESANE. This thesis describes the implementation of PyMORESANE as well as its subsequent augmentation with MPU and GPGPU code. These additions accelerate the algorithm and thus make it competitive with its legacy counterparts. The acceleration of the algorithm is verified by means of benchmarking tests for varying image size and complexity. Additionally, PyMORESANE is shown to work not only on synthetic data, but on real observational data. This verification means that the MORESANE algorithm, and consequently the PyMORESANE implementation, can be added to the current arsenal of deconvolution tools.
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- Date Issued: 2015
The diet of the Subantarctic (A. Tropicalis) and Antarctic (A. Gazella) Fur seal at Marion Island
- Authors: Mgibantaka, Nonkoliso Felicia
- Date: 2013
- Subjects: Southern fur seals -- Feeding and feeds -- Antarctica , Seals (Animals) -- Antarctica , Marine ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10729 , http://hdl.handle.net/10948/d1021104
- Description: Studying the diet of marine top predators is important for understanding the trophic ecology of the predators but also the distribution, abundance and seasonal variation of prey species. Dietary studies on subantarctic fur seals (Arctocephalus tropicalis) and Antarctic fur seals (A. gazella) is important for assessing their role as predators in the Southern Ocean. Seven hundred and sixty four scats were collected from an A. tropicalis colony at Cape Davis while 659 scats were collected from an A. gazella colony at Watertunnel stream from April 2006 to March 2010. Hard remains such as fish otoliths and cephalopod beaks were used for identification and quantification of prey. A. tropicalis diet comprised of three animal groups (fish, cephalopod and crustaceans) while A. gazella diet was made up of four animal groups (fish, cephalopods, crustaceans and seabirds). Fish contributed substantially more than other prey items in the diet of both fur seal species over the study period. Both species fed predominantly on fish of the family Myctophidae which constituted a numerical abundance of 98.9 percent in scats for both species combined. A. tropicalis fed on fish prey species from eight families, namely: Myctophidae, Notosudidae, Paralepididae, Nototheniidae, Bathylagidae, Chlorophthalmidae, Sternoptychidae and Photichthyidae while A. gazella fed on fish from six of these families, with Chlorophthalmidae and Photichthyidae not represented in its diet. Cephalopods and crustaceans were found in low numbers in the diet of both seal species and seabird remains were only found in the diet of A. gazella. Numerically, the most dominant species were from the genus Gymnoscopelus followed by Protomyctophum and then Electrona. In the diet of A. tropicalis, Gymnoscopelus contributed 66 percent, Protomyctophum 18 percent and Electrona 5.9 percent while in the diet of A. gazella Gymnoscopelus, Protomyctophum and Electrona contributed 59.43 percent, 20.24 percent and 14.24 percent respectively. Gymnoscopelus species comprised G. piabilis, G. bolini, G. braueri, G. fraseri, and G. nicholsi; Protomyctophum comprised Protomyctophum bolini, P. choriodon and P. tenisoni while Electrona comprised Electrona antarctica, E. carlsbergi and E. subaspera. Gymnoscopelus piabilis was the most dominant species from this genus while Electrona carlsbergi and Protomyctophum tenisoni dominated the genus Electrona and Protomyctophum respectively. The total number of fish species utilised by A. tropicalis was twenty four while twenty three fish species were identified in A. gazella diet. Bathysauropsis gracilis only featured in the diet of A. tropicalis while Lampanyctus ater and Lepidonotothen larseni were only found in the diet of A. gazella. To compare the diet of the seal species between seasons, a year was divided into three seasons, early summer, late summer and winter. Their diet was also compared between years from 2006 to 2010. Myctophid fish species showed substantial seasonal and annual fluctuations in the diet of the two fur seal species. E. carlsbergi, G. nicholsi and G. piabilis increased in numerical abundance in winter while Melectrona ventralis increased in late summer. The numerical abundance of G. fraseri and P. tenisoni increased in early summer. Generally, the two fur seal species fed on the same prey species. However, there was a significant difference when the diet of both fur seals was compared seasonally. There was no significant difference when the diet of A. gazella was compared annually, although such a difference was apparent for A. tropicalis.
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- Date Issued: 2013
Isolation, purification and characterization of a novel glucose oxidase from Penicillium canescens Tt42
- Authors: Simpson, Clinton
- Date: 2006
- Subjects: Penicillium , Glucose , Oxidases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3975 , http://hdl.handle.net/10962/d1004034 , Penicillium , Glucose , Oxidases
- Description: A novel glucose oxidase from Penicillium canescens (Tt42) was isolated, purified and characterised. The P. canescens Tt42 was cultivated using an optimised growth medium from literature, and maximum glucose oxidase activities of 11.5 U/ml and 6.9 U/ml for the intra- and extracellular fractions were obtained. Maximum glucose oxidase production was achieved after 72 hours at 28°C which coincided with glucose depletion. A total of 1104 U (from 60ml) of glucose oxidase was produced with a biomass specific glucose oxidase activity of 1.08 Umg[superscript -1] Four methods of cell disruption were evaluated for release of intracellular glucose oxidase from P. canescens Tt42 cells. These methods were; sonication, French press, Freeze-Thaw and a high pressure cell disrupter (Z-Plus Series) from Constant systems. All the methods were successful in releasing the intracellular glucose oxidase from P. canescens Tt42. The use of the Constant Systems high pressure cell disrupter was preferred, since it was the simplest and most rapid method. Ammonium sulphate precipitation was shown to be effective as an initial purification step for extracellular glucose oxidase from P. canescens Tt42. Comparison of the intra- and extracellular glucose oxidase fractions using isoelectric focusing showed 2 isoenzymes in both fractions. The pI values of the isoenzymes were determined to be 4.30 and 4.67, with the former being dominant. Since both the intra- and extracellular fractions contained the same isoenzymes of glucose oxidase, further purification studies were performed using the extracellular fraction. The glucose oxidase from P. canescens Tt42 was purified using 3 main techniques: ammonium sulphate precipitation (60% - 70% cut), anion exchange chromatography (Super Q 650M) and size exclusion chromatography (Sephadex S200HR). The glucose oxidase was determined to be ±80% pure by size exclusion chromatography. The final purified glucose oxidase was lyophilised, and an overall purification yield of 10.3% was achieved with an 8.6-fold purification. The purified glucose oxidase was confirmed to be catalase free. Glucose oxidase from P. canescens Tt42 was determined to be a dimeric protein (M[subscript r] ±148kDa) likely consisting of 2 equal subunits (M[subscript r] ± 70kDa). The temperature optimum range was shown to be 25-30°C. The optimum pH for the oxidation of β-D-glucose was pH 7. The enzyme was shown to be stable at 25°C for 10 hours, with a half life of approximately 30 minutes at 37°C. The lyophilised enzyme was stable at -20°C for 6 months. The properties of glucose oxidase from Tt42 were comparable to alternative glucose oxidase enzymes from Aspergillus and other Penicillium species. Glucose oxidase from P. canescens Tt42 was shown to have distinct kinetic characteristics. The V[subscript max] and K[subscript m] were shown to be 651 Umg[superscript -1] and 18.4 mM towards β-D-glucose. The catalytic kcat and specificity k[subscript cat]/K[subscript m] constants for glucose oxidase from P. canescens Tt42 were shown to be 791 s[superscript -1] and 40 s[superscript -1]mM[superscript -1] each respectively. The specificity constant (k[subscript cat]/K[subscript m]) of glucose oxidase from P. canescens Tt42 was determined to be 1.3-fold higher than that that of A. niger (Sigma Type VII) and 8.7-fold lower than that of P. amagasakiense (ATCC 28686) from literature.
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- Date Issued: 2006
Expanding the capabilities of the DPS lonosonde system
- Authors: Magnus, Lindsay Gerald
- Date: 2001
- Subjects: Ionosondes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5560 , http://hdl.handle.net/10962/d1018243
- Description: The Digisonde Portable Sounder (DPS) is a low power pulse ionosonde capable of recording a wealth of scientific information about the ionosphere. The routine vertical incidence mode, that produces the scaled ionospheric parameters, only records limited Doppler and no precise angle of arrival (AoA) information. The drift mode produces precise scientific information but only limited range information. This thesis explains the operation of the DPS and then examines the drift data by first showing the Doppler velocities (V*) calculated for a fixed frequency ionogram as well as the velocities calculated from an interesting ionospheric disturbance measured with a stepped frequency ionogram and second by illustrating the presence of a variation in the AoA of ionospheric echoes at sunrise. The conclusion of the thesis is that a drift vertical incidence mode be developed to allow the simultaneous measurement of the scaled ionospheric parameters and the precise AoA and full Doppler spectrum information.
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- Date Issued: 2001