Mesozooplankton dynamics in a biogeographical transition zone estuary
- Authors: Deyzel, (Shaun) Herklaas Phillipus
- Date: 2012
- Subjects: Marine zooplankton -- South Africa , Benthos -- South Africa , Estuarine ecology -- South Africa , Mangrove forests
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10687 , http://hdl.handle.net/10948/d1007901 , Marine zooplankton -- South Africa , Benthos -- South Africa , Estuarine ecology -- South Africa , Mangrove forests
- Description: This thesis presents the first intensive community-level investigation of the mesozooplankton from a biogeographical transition zone estuary. The Mgazana Estuary is located along a rural, semi-undeveloped part of South Africa’s east coast, believed to represent a transition zone between the subtropical and warm-temperate biogeographical zones. The research represented in this thesis involves data collected over a five year period between 2002 and 2006, with additional data collection made in 2008. The study focussed on five areas of investigation, the first of which investigated the physico-chemical dynamics of the Mgazana Estuary. The Mgazana Estuary exhibited marked vertical, horizontal and regional structures in the hydrological environment. Prominent vertical and horizontal stratification characterised summer months. A substantial turbidity front was observed in the lower estuary during summer and winter. The upper estuary was marked by considerable variation in multiple variables but especially salinity. These structures appeared to have shifted in position over the horizontal plane, which was attributed to variation in freshwater flow. The second study focused on the spatial dynamics of mesozooplankton in the Mgazana Estuary. The zooplankton was rich and in terms of composition typical of mangrove systems. The Copepoda were dominant, numerically and in terms of taxonomic representation. Calanoids Acartiella natalensis and Pseudodiaptomus hessei characterised middle and upper reaches in summer and mostly upper reaches in winter. On community level, a highly structured assemblage arrangement was observed during summer and winter months. These trends were further scrutinised under the theoretical framework of ecological boundaries. In so doing, an agreeable spatial association emerged between specific assemblages and their environments. These trends were concluded to reflect ecoclinal as well as ecotonal properties, the latter describing interactions over narrow spatial bands of marked changes in turbidity. The third study investigated flooding events as short-lived extreme meteorological events and the influence on zooplankton. Within this regard, second-stage multivariate statistics was used to assess year-to-year variability in assemblage structures on whole-system and regional scales. The impact of two major flooding events that flushed the estuary some days prior to sampling could clearly be elucidated. Flooding emerged as a significant source of inter-annual variability in the zooplankton of the Mgazana Estuary. Second-stage multivariate analysis proved to be an effective analytical strategy for investigating inter-annual variability in species assemblage structures. Results from the preceding study prompted a detailed investigation into the spatio-temporal dynamics of Acartiella natalensis, the most important zooplankton species of the system aimed at elucidating flood responses. Acartiella natalensis showed indication of temporal arrest in association with flooding events in a similar fashion as is observed in seasonal variation trends in estuaries towards its geographical distribution limit south of the study area. It was concluded that A. natalensis was severely affected by floods and the possibility exist for entrainment of entire populations from the estuary during flooding events. The final study tested the hypothesis of post-flood propagation from a resting egg bank in the sediments of the Mgazana Estuary. Preliminary data revealed that numerous eggs were present in the sediments. Nauplii hatched from eggs under laboratory conditions were identified as belonging to the family Acartiidae. The preliminary mode of diapause is presented as a schematic model, emphasising the role of freshwater flow and specific environmental variables. This was the first discovery of resting eggs from a subtropical estuary from South Africa. It is hoped that the findings of this study would give rise to new research initiatives investigating the importance of resting stages in estuarine and coastal Copepoda species and the role such reproductive strategies may play in estuarine functioning.
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- Date Issued: 2012
Network analysis of trophic linkages in two sub-tropical estuaries along the South-East coast of South Africa
- Authors: Vosloo, Mathys Christiaan
- Date: 2012
- Subjects: Estuaries -- South Africa -- Eastern Cape , Estuarine ecology , Network analysis (Planning)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10708 , http://hdl.handle.net/10948/d1010966 , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology , Network analysis (Planning)
- Description: Estuaries are some of the most productive yet threatened ecosystems in the world. Despite their importance they face significant threats through changes to river flow, eutrophication, rapid population growth long the caost and harvesting of natural resources. A number of international studies have been conducted investigating the structure and functioning of an array of ecosystems using ecological network analysis. Energy flow networks have been contsructed for coastal, lagoonal, intertidial and, most notably, permantently open estuaries. Despite the valualble insights contributed by these and other studies, a lack of information on the majority of estuarine ecosystems exists.
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- Date Issued: 2012
Peri-urban agriculture and population growth : the case of Asmara, Eritrea
- Authors: Fessahaie, Tesfamichael
- Date: 2012
- Subjects: Urban agriculture -- Eritrea -- Asmara , Cities and towns -- Eritrea -- Asmara -- Growth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10668 , http://hdl.handle.net/10948/d109790
- Description: The aim of this thesis is to provide a differentiated view of peri-urban agriculture in the context of urban population growth in Asmara, Eritrea. Peri-urban agriculture is viewed as a distinct type of broader urban agriculture, and in this case is not as subsistence-orientated as other branches of it. Urban population growth is comprised of three elements, namely, natural population increase, rural-urban migration and outward movement of people to the urban periphery linked to urban expansion. Each receives extensive treatment. Asmara is the capital city of Eritrea and using Weeks (2004:473) phrase can be termed as a “primate city”. As such, it exerts a major influence on the political, economic and cultural life of the country, but has never been subjected to this type of research. The analytical framework that is adopted is that of urban population growth. In order to operationalize it, theoretical insights into each of its three branches were applied. For example, the informalisation of the economy in developing cities was used to explain the operation of peri-urban agriculture in the context of natural population growth. An adaption of the original Harris-Todaro Model by Fields (2004) was used for the migrants, and the Mosaic Model by Bryant and Johnson (1992) for those facing urban encroachment. Primary data were collected in the field by the author with the help of research assistants. This was supplemented by secondary data which involved reports commissioned by the Ministry of Agriculture and the Ministry of Public Works. Focus Group discussions were also held to supplement the data with information, views and insights that do not emerge in one-to-one interviews. This thesis demonstrates that those respondents operating within the context of natural population growth make a viable living from peri-urban agriculture, but that they also recognise that there are considerable challenges to be faced. Three sub-groups of farmers are identified. Of these, poultry farmers are the most vulnerable because of the high costs of the inputs, the uncertainty associated with avian „flu and an undeveloped distribution network. The vegetable producers, on the other hand, have a sophisticated marketing network, but low levels of education, high household numbers and an impending shortage of land and water. The agriculturalists that have migrated to Asmara seem to have created sustainable occupations for themselves over a number of years. However, 75 percent of them felt that migration to Asmara was not worthwhile. This negative view is explained in terms of the struggle it has taken to maintain such a living and the growing shortage of land. This set of farmers achieves lower production levels than its city-reared counterparts, carries considerable expenses and has to hire its land. The farmers who have had to cope with urban encroachment fall into two classes. The first has chosen to remain in peri-urban agriculture despite feeling the pressure to scale down activities and thus have a lower income. The majority of this group are dairy farmers who have to trade off increasing costs of cattle feed against shrinking grazing land. They are unwilling to take the initiative to solve their land problems, but look to the authorities to do so. The second class of respondents in this category have abandoned their agricultural holdings. The majority of these agriculturalists are poultry farmers living in the Eastern side of the city. A shortage of agricultural land, high population densities and high costs of inputs make poultry farming difficult. This thesis, therefore, presents a multifaceted view of peri-urban agriculture. While each set of farmers has to cope with its own particular circumstances, there is a common factor. This is the tension between preserving agricultural land on the urban fringe and the need to expand the city to accommodate its inhabitants.
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- Date Issued: 2012
Photoconductive spectroscopy of GaSb thin films
- Authors: Shura, Megersa Wodajo
- Date: 2012
- Subjects: Photoelectron spectroscopy , Photoconductivity
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10549 , http://hdl.handle.net/10948/d1019937
- Description: In this study, we have investigated the photo-response of gallium antimonide (GaSb) by measuring the spectral, injection level, as well as the temperature dependence of the steady-state photoconductivity of epitaxial films. By combining the various photo-response measurements with-galvanometric measurements, the effective excess carrier lifetimes could be calculated and described in terms of the various experimental variables considered. From a comparison of the measured and theoretical carrier lifetimes, a clear discrepancy was found for the injection dependent results. This inconsistency between the expected and measured behaviours was resolved using a two-layer model to describe the photo-conductive response of the thin film. In this model, the generation/recombination processes are considered for the bulk as well as for a depleted near-surface region. By combining these two contributions when calculating the total excess photocurrent, the various experimental results could be successfully described. The photo-response measurements revealed that the main contribution to the photocurrent came from the near-surface region, where the bandto- band and Auger recombination transitions are reduced. From the simulation of the injection level dependence of the excess carrier lifetime, some of the near-surface characteristics, such as the position of the surface Fermi-level and the surface recombination velocity, could be determined. In the case of p-type GaSb, the room temperature surface Fermi-level was found to be pinned (290±20) meV above the valence band maximum, whereas the n-type material had a pinning position of (150±20) meV above the valence band maximum. These pinning positions were shown to be independent of the doping density and relatively insensitive to the surface treatments considered. The presence of a near-surface depletion region, as well as the position of the surface Fermi-level, was corroborated by Raman spectroscopy. From a comparison of the phonon mode and the phonon-hole plasmon coupled mode, a surface Fermi-level position of (300 ± 30) meV was deduced for p-type GaSb. Finally, the effect various surface treatments have on the photo-response, and related surface properties, were investigated. Removal of the native oxide (HCl:H2O) followed by sulphur passivation (Na2S:9H2O) results in a slight decrease in the surface Fermi-level position. Aging studies however revealed that the surface characteristics reverted back to the untreated values following a few days in air. Coating the GaSb surfaces with a thin ZnS layer was found to have little effect on the surface potential, resulting only in a slight increase in the near-surface donor density. The sensitivity of the measured photocurrent to surface treatments and changes in the ambient with cooling, further validate the importance of considering the surface potential and the related space-charge when describing the photoconductive response of GaSb thin films.
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- Date Issued: 2012
Response of mangroves in South Africa to anthropogenic and natural impacts
- Authors: Hoppe-Speer, Sabine Clara-Lisa
- Date: 2012
- Subjects: Mangrove forests , Climatic changes , Forest resilience
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10630 , http://hdl.handle.net/10948/d1012123 , Mangrove forests , Climatic changes , Forest resilience
- Description: The total mangrove area cover in South Africa is 1631.7 ha, with the largest area cover in a few estuaries in the KwaZulu-Natal Province (1391.1 ha) and the remainder recorded in the Eastern Cape Province with 240.6 ha. This represents 0.05 percent of Africa‟s mangrove area cover and although small adds irreplaceable value to the biodiversity of South Africa. Mangroves are threatened by over-utilization through harvesting for firewood and building materials as well as excessive browsing and trampling by livestock. The objective of this study was to investigate the response of mangroves to different stressors from natural change as well as anthropogenic pressures. This was done by identifying pressures, measuring area cover, population structure and environmental parameters such as sediment characteristics. Mangroves in 17 estuaries along the east coast were investigated. Population structure and the area covered by mangroves in 2011/2012 were compared with data from the same area for 1999. Detailed studies were conducted in St. Lucia Estuary to investigate the response of mangroves to reduced tidal flooding; mangrove expansion at a latitudinal limit in a protected area at Nahoon Estuary was studied and the effect of cattle browsing on mangroves was measured at Nxaxo Estuary. The St. Lucia Estuary (28°S; 32°E) represented a unique study site as the mouth has been closed to the sea since 2002 and the mangrove habitats have been non-tidal. St. Lucia Estuary is both a Ramsar and World Heritage site and therefore understanding the response of mangroves to changes in the environment is important. In 2010 sediment characteristics and mangrove population structure were measured at four sites which were chosen to represent different salinity and water level conditions. The site fringing the main channel had the highest density of mangrove seedlings and saplings. The dry site had a lower density of mangroves with mostly only tall adult trees and few saplings. Mangrove tree height and density increased at sites with high sediment moisture and low surface sediment salinity. Few seedlings and saplings were found at sites with dry surface sediment and high salinity. Long term data are needed to assess the influence of mouth closure on recruitment and survival of the mangrove forest at St. Lucia Estuary; however this study has shown that sediment characteristics are unfavourable for mangrove growth at sites now characterized by a lack of tidal flooding. It is not known when exactly the mangroves were planted in Nahoon Estuary (32°S; 27° E), East London, but it is suspected that this was in the early 1970s. Avicennia marina (Forrsk.)Vierh. was planted first, followed a few years later by the planting of Bruguiera gymnorrhiza (L.) Lam. and Rhizophora mucronata (L.) among the larger A. marina trees. Surprisingly the mangrove population appears to be thriving and this study tested the hypothesis that mangroves have expanded and replaced salt marsh over a 33 year period. This study provides important information on mangroves growing at higher latitudes, where they were thought to not occur naturally due to lower annual average temperatures. It further provides insights on future scenarios of possible shifts in vegetation types due to climate change at one of the most southerly distribution sites worldwide. The expansion of mangroves was measured over a 33 year period (1978 - 2011) using past aerial photographs and Esri ArcGIS Desktop 10 software. In addition, field surveys were completed in 2011 to determine the population structure of the present mangrove forest and relate this to environmental conditions. The study showed that mangrove area cover increased linearly at a rate of 0.06 ha-1 expanding over a bare mudflat area, while the salt marsh area cover also increased (0.09 ha-1) but was found to be variable over time. The mangrove area is still small (< 2 ha) and at present no competition between mangroves and salt marsh can be deduced. Instead the area has the ability to maintain high biodiversity and biomass. Avicennia marina was the dominant mangrove species and had high recruitment (seedling density was 33 822 ± 16 364 ha-1) but only a few Bruguiera gymnorrhiza and Rhizophora mucronata individuals were found (< 10 adult trees). The site provides opportunities for studies on mangrove / salt marsh interactions in response to a changing climate at the most southern limit of mangrove distribution in Africa. This research has provided the baseline data, permanent quadrats and tagged trees to be used in future long-term monitoring of population growth and sediment characteristics. At Nxaxo Estuary (32°S; 28°E) the response of mangrove trees (Avicennia marina) to cattle browsing and trampling was investigated by using cattle exclusion plots. Exclusion plots were established by fencing in five 25 m2 quadrats and adjacent to each experimental quadrat a control quadrat (not fenced in, 25 m2) was set-up. Trees were tagged and measured annually from 2010 to 2012. Sediment salinity, pH, moisture, organic content, compaction as well as sediment particle size was also measured in each quadrat. Sediment characteristics did not vary between control and experimental plots but did show changes between the years. The mangrove trees in the cattle exclusion plots grew exponentially over a period of two years. There was a significant increase in mean plant height (5.41 ± 0.53 cm), crown volume (0.54 ± 0.01 m3) and crown diameter (7.09 ± 0.60 cm) from 2010 to 2012. Trees in the control plots had significantly lower growth (p < 0.05). There was a decrease in plant height (-0.07 ± 0.67cm1) and only small increases in crown volume (0.14 ± 0.1 m3) and crown diameter (2.03 ± 2.61 cm). The research showed that browsing on mangroves by cattle stunts growth and causes a shrubby appearance as a result of coppicing. The browsed trees were dwarfed with horizontal spreading of branches and intact foliage close to the ground while the plants in the cattle exclusion plots showed an increase in vertical growth and expansion. In the cattle exclusion plots there was a significantly higher percentage of flowering (67 percent) and fruiting (39 percent) trees in 2012 compared to the control sites where 34 percent of the plants were flowering and 5.4 percent of the plants carried immature propagules. Observations in the field also indicated that cattle had trampled a number of seedlings thus influencing mangrove survival. The study concluded that browsing changes the morphological structure of mangrove trees and reduces growth and seedling establishment. This is an additional stress that the mangroves are exposed to in rural areas where cattle are allowed to roam free. Seventeen permanently open estuaries provide habitat for mangrove forests along the former Transkei coast. This part of the Eastern Cape is mostly undeveloped and difficult to access. Mangrove area cover, species distribution, population structure and health of the mangrove habitat were compared with results from previous studies in 1982 and 1999. The mangrove Bruguiera gymnorrhiza had the densest stands and was widely distributed as it was present in 13 of the 17 estuaries. Avicennia marina was dominant in those estuaries which had the largest area cover of mangroves and was present in 10 estuaries, while Rhizophora mucronata was rare and only present in five estuaries. Anthropogenic and natural impacts were noted within the mangrove habitats in each of these estuaries. Harvesting of mangrove wood, livestock browsing and trampling and footpaths occurred in most of the estuaries (> 70 percent). It was observed that browsing on trees resulted in a clear browse-line and browsing on propagules mainly by goats resulted in reduced seedling establishment in most of the estuaries except those in protected areas. Mangroves had re-established in estuaries where they had been previously lost but mouth closure due to drought and sea storms resulted in the mass die back of mangroves in the Kobonqaba Estuary. There was a total loss of 31.5 ha in mangrove area cover in the last 30 years and this was a total reduction of 10.5 ha (11 percent) for every decade. This is high considering that the present total mangrove area cover is only 240.6 ha for all the Transkei estuaries. In this study it was concluded that the anthropogenic impacts such as livestock browsing and trampling as well as harvesting in these estuaries contributed most to the mangrove degradation as these are continuous pressures occurring over long periods and are expected to increase in future with increasing human population. Natural changes such as sea storms occur less frequently but could result in large scale destruction over shorter periods. Examples of these are mouth closure that result in mangrove mass mortality as well as strong floods which destroy forest by scouring of the banks.
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- Date Issued: 2012
Rhenium complexes with multidentate benzazoles and related N,X-donor (X = N, O, S) ligands
- Authors: Potgieter, Kim Carey
- Date: 2012
- Subjects: Rhenium , Benzimidazoles , Ligands (Biochemistry)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10438 , http://hdl.handle.net/10948/d1020773
- Description: The coordination behaviour of 4-aminoantipyrine (H2pap) and its Schiff base derivatives with the oxorhenium(V) and tricarbonyl rhenium(I) cores are reported. The reactions of trans-[ReOX3(PPh3)2] (X = Cl, Br) with H2pap were studied, and the complexes cis-[ReX2(pap)(H2pap)(PPh3)](ReO4) were isolated. The ligand pap is coordinated monodentately through the doubly deprotonated amino nitrogen as an imide, and H2pap acts as a neutral bidentate chelate, with coordination through the neutral amino nitrogen and the ketonic oxygen. The reactions of trans-[ReOBr3(PPh3)2] and cis-[ReO2I(PPh3)2] with -(2-aminobenzylideneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one (H2nap) and 4-(2-hydroxybenzylideneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one (Hoap) are also reported. The complexes cis-[Re(nap)Br2(PPh3)]Br, [ReO(OEt)(Hnap)(PPh3)]I and [ReO(OMe)(oap)(PPh3)]I were isolated and structurally characterized. The reactions of the Schiff base derivatives 1,2-(diimino-4’-antipyrinyl)ethane (dae) and 2,6-bis(4-amino-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one)pyridine (bap) with [Re(CO)5X] (X = Br or Cl) produced fac-[Re(CO)3(dae)Cl] and fac-[Re(CO)3(bap)Br] respectively. A series of rhenium(I) tricarbonyl complexes containing bidentate derivatives of aniline was synthesized and structurally characterized. With 1,2-diaminobenzene (Hpda) the ‘2+1’ complex salt fac-[Re(CO)3(κ1-Hpda)(κ2-Hpda)]Br was isolated, but with 2-mercaptophenol (Hspo) the bridged dimer [Re2(CO)7(spo)2] was found. The neutral complex [Re(CO)3(ons)(Hno)] was isolated from the reaction of [Re(CO)5Br] with 2-[(2-methylthio)benzylideneimino]phenol (Hons; Hno = 2-aminophenol), with ons coordinated as a bidentate chelate with a free SCH3 group. In the complex [Re(CO)3(Htpn)Br] (Htpn = N-(2-(methylthio)benzylidene)benzene-1,2-diamine) the potentially tridentate ligand Htpn is coordinated via the methylthiol sulfur and imino nitrogen atoms only, with a free amino group. These rhenium(I) complexes, with the exception of [Re2(CO)7(spo)2], revealed broad emissions centred around 535 nm. The reactions of the rhenium(V) complex cis-[ReO2I(PPh3)2] with 2-aminothiophenol (H2atp), benzene-1,2-dithiol (H2tdt) and 2-hydroxybenzenethiol (H2otp) led to the formation of the rhenium(III) compounds [Re(Hatp)(ibsq)2].OPPh3, [Re(sbsq)3].OPPh3 and [Re(obsq)3].OPPh3 (ibsq = 2-iminothiobenzosemiquinonate, sbsq = 1,2-dithiobenzosemiquinonate, obsq = 2-hydroxothiobenzosemiquinonate) respectively. The complexes adopt a trigonal prismatic geometry around the rhenium centre with average twists angles between 3.20-26.10˚. The E1/2 values for the Re(III)/Re(IV) redox couple were found to be 0.022, 0.142 and 0.126 V for [Re(Hatp)(ibsq)2].OPPh3, [Re(sbsq)3].OPPh3 and [Re(obsq)3].OPPh3 respectively. The reactions of the benzoxazole ligands, 3-(benzoxazol-2-yl)pyridin-2-ol (Hbop) and 5-amino-2-(benzoxazol-2-yl)phenol (Habo) with a [ReO]3+ precursor led to the rhenium(III) complex, [ReCl2(bop)(PPh3)2], and the complex salt, [ReO(abo)I(PPh3)2]ReO4, respectively. A variety of benzothiazole and benzimidazole derivatives were reacted with [Re(CO)5Br]. In the case of bis(benzothiazol-2-ylethyl)sulfide (bts), the neutral complex fac-[Re(CO)3(bts)Br] was obtained. The dimeric complexes (μ-dbt)2[Re(CO)3]2 and (μ-mbt)2[Re(CO)3]2 were formed when 1,3-bis(benzothiazol-2-yl)thiourea (Hdbt) and 1-(benzothiazol-2-ylidene)-3-methylthiourea (Hmbt) were used as ligands. The reaction of 2,2’-(oxybis(methylene))bis(benzimidazole) (bmb) with [Re(CO)5Cl] resulted in the rhenium(I) complex salt fac-[Re(CO)3(bmb)]+, with the tri-μ-chlorohexacarbonyl dirhenate [Re2(CO)6Cl3]- as the counter anion. The neutral complex fac-[Re(CO)3(btp)Cl] was isolated from the reaction of the 2,9-bis(benzothiazol-2-yl)-1,10-phenanthroline (btp) ligand and [Re(CO)5Cl]. The reactions of trans-[ReOCl3(PPh3)2] with bis(benzimidazol-2-ylethyl)sulfide (btn) and 1-(benzothiazol-2-ylidene)-3-methylthiourea (Hmbt) led to the formation of the cationic compounds (μ-O)2[Re2O2(btn)2]I2 and [ReCl2(bte)(PPh3)2]Cl (bte = (benzothiazole-2-yl)-N-ethylidenemethanamine) respectively.
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- Date Issued: 2012
Ruthenium and palladium assisted silver transport in silicon carbide
- Authors: O'Connell, Jacques Herman
- Date: 2012
- Subjects: Gas cooled reactors , Ruthenium , Palladium , Silicon carbide
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10404 , http://hdl.handle.net/10948/d1010960 , Gas cooled reactors , Ruthenium , Palladium , Silicon carbide
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- Date Issued: 2012
Soil erosion and sediment source dynamics of a catchment in the Eastern Cape province, South Africa: an approach using remote sensing and sediment source fingerprinting techniques
- Authors: Manjoro, Munyaradzi
- Date: 2012
- Subjects: Soil erosion -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10663 , http://hdl.handle.net/10948/d1015038
- Description: This study originated from an evaluation of the performance of a commercially available high concentration point focus concentrator PV system. The effect of module design flaws was studied by using current-voltage (I-V) curves obtained from each module in the array. The position of reverse bias steps revealed the severity of mismatch in a string of series-connected cells. By understanding the effects of the various types of mismatch, power losses and damage to the solar cells resulting from hot spot formation can be minimized and several recommendations for improving the basic performance of similar systems were made. Concern over the extent and type of defect failure of the concentrator photovoltaic (CPV) cells prompted an investigation into the use of a light beam induced current (LBIC) technique to investigate the spatial distribution of defects. An overview of current and developing LBIC techniques revealed that the original standard LBIC techniques have found widespread application, and that far-reaching and important developments of the technique have taken place over the years. These developments are driven by natural progression as well as the availability of newly developed advanced measurement equipment. Several techniques such as Lock-in Thermography and the use of infrared cameras have developed as complementary techniques to advanced LBIC techniques. As an accurate contactless evaluation tool that is able to image spatially distributed defects in cell material, the basis of this method seemed promising for the evaluation of concentrator cells.
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- Date Issued: 2012
Surface modifications of InAs: effect of chemical processing on electronic structure and photoluminescent properties
- Authors: Eassa, Nahswa Abo Alhassan Eassa
- Date: 2012
- Subjects: Indium arsenide , Chemical processes , Photoluminescence
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/8714 , vital:26423
- Description: In this thesis, the effects of various chemical treatments on the surface modification of bulk InAs are investigated. The study focuses on the chemical processes that occur upon the exposure of the surface to sulphur-, chlorine- and bromine-containing solutions and oxygen, and the resulting changes to the electronic structure of the surface, as deduced from photoluminescence (PL) measurements, X-ray photoelectron spectroscopy (XPS), Auger electron spectroscopy (AES), Raman scattering and scanning electron microscopy (SEM). Three processing treatments were evaluated: i) treatment with sulphur-based solutions (Na2S:9H2O, (NH4)2S + S, [(NH4)2S / (NH4)2SO4] + S); ii) etching in halogen-based solutions (bromine-methanol and HCl: H2O); and iii) thermal oxidation. A significant overall enhancement in PL response was observed after chemical treatment or thermal oxidation, which is associated with a reduction in surface band bending. These changes correlate with the removal of the native oxide, in addition to the formation of well-ordered layers of In-S (or In-As)O as a passivating layer, indicating that electronic passivation occurs at the surface. The passivating effect on sulphide treated surfaces is unstable, however, with an increase in band bending, due to reoxidation, observed over periods of a few days. The lowest re-oxidation rate was observed for ([(NH4)2S / (NH4)2SO4] + S). Etching in HCl:H2O and Br-methanol solutions of appropriate concentrations and for moderate times (1 min) resulted in smooth and defect-free InAs surfaces. Etching completely removed the native oxides from the surface and enhanced the PL response. The adsorption of bromine and chlorine onto the InAs surface led to the formation of As-Brx , In-Brx, As-Clx and In-Clxcompounds (x = 1, 2, 3), as inferred from changes in the In 3d3/2; 5/2 and As 3d core level binding energies. The etch rate was found to decrease because of strong anisotropic effects. The improvements in surface properties were reversed, however, if the concentrations of the etchants increased or the etch time was too long. In the worst cases, pit formation and inverted pyramids with {111} side facets were observed. Surface treatments or thermal oxidisation significantly enhanced the PL intensity relative to that of the as-received samples. This was due to a reduction in the surface state density upon de-oxidation, or in some cases, to the formation of a well ordered oxide layer on the surface. The overall increase in PL intensity after treatment is ascribed to a reduction in band bending near the surface. This allows several welldefined peaks not observed or reported previously for bulk InAs (with a carrier concentration n~2x1016 cm-3), to be studied. A combination of PL and XPS measurements before and after the various treatments was used to identify the chemical nature of the impurities giving rise to bound exciton recombination in InAs (111).
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- Date Issued: 2012
The effects of salinity and inundation on salt marsh plants in the context of climate change
- Authors: Tabot, Pascal Tabi
- Date: 2012
- Subjects: Salt marsh plants -- Climatic factors , Plant ecophysiology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10637 , http://hdl.handle.net/10948/d1019919
- Description: Ecophysiology studies are needed to predict plant responses in relation to climate change. Variations in salinity and inundation are expected to influence the survival and distribution of salt marsh. The following species were chosen to study as they occur in most South African salt marshes and are representative of different tidal ranges; namely Triglochin buchenaui (lower intertidal), Bassia diffusa (upper intertidal succulent) and Limonium linifolium (upper intertidal non-succulent). To simulate climate change conditions as predicted for South Africa, a 3 x 5 controlled experiment of three inundation levels (tidal, submerged and drought) and five salinity levels (0, 8, 18, 35, 45 ppt) was conducted for each species. This resulted in 15 treatments per species. Plant responses were measured over a three month period. Triglochin buchenaui showed significant variation in height (7.57 ± 0.5 to 29 ± 1.55 cm, p < 0.005, DF = 55) with optimum growth at 0 ppt under tidal conditions; leaf area increments and relative growth rates which decreased with increasing salinity under all inundation states. There was almost a cessation of growth under submergence which reduces the plant’s regeneration potential under these conditions. Proline accumulation (1.84 ± 0.23 to 3.36 ± 0.38 mg l-1), response of photosynthetic pigments and electrolyte leakage (8.17 ± 0.80 to 38.36 ± 7.42 percent) were fundamental to osmotic and membrane response regulation. Plants survived in all inundation states at salinity up to 45 ppt, but the optimum range was 0 to 18 ppt, and best water state was the tidal condition. Viable rhizomes were produced under drought conditions. Bassia diffusa (Thunb.) Kuntze plants under submergence died within one month, irrespective of the salinity. Optimum growth occurred in plants of the tidal treatment at 18 ppt, and reduced with increased salinity and drought conditions. Plants in the tidal treatments were more succulent than the drought-treated plants. There was reduced leaf mass and high anthocyanin concentrations in drought-treated plants and these effects increased with salinity. Soil and leaf water potential were positively correlated with anthocyanin concentration in leaves and stems, suggesting anthocyanin accumulated in response to drought and could be an adaptation to lower the plant’s water potential under drought conditions. A shift of anthocyanin from leaves to stems was found in drought-treated plants, and this possibly enables the maximization of photosynthesis in leaves, to complement its role in osmotic balance and photo-protection. Growth of Limonium linifolium showed that the plant was tolerant to a wide range of salinity under both tidal and drought conditions, but was susceptible to complete submergence, with high membrane damage even in tidal-treated plants. Plants died within 2 weeks of complete submergence. Results further indicated that L. linifolium tolerates extreme drought by accumulating large quantities of proline and oxalic acid, which consequently lowers its water potential for uptake of soil water of high salinity. Excess salts were excreted through salt glands. This is an important adaptation for a plant that thrives in a highly variable saline habitat Further investigation of submergence effects on upper intertidal species using B. diffusa showed three key stages in the response. A drop in chlorophyll a+b within 6 hours (4.2 ± 0.2 to 2.4 ± 0.3 mg l-1) with a corresponding increase in carotenoid concentration (0.6 ± 0.1 mg l-1) indicated an immediate response to submergence. Oxalic acid concentration was highest on Day 4 (13.6 mM) as opposed to control levels, indicative of its role in submergence tolerance, thus Day 4 may be the peak of positive acclimation. The third phase was marked by a sharp increase in electrolyte leakage to 47.5 ± 2.6 percent on Day 10, from 9.4 ± 1.4 percent on Day 7, with a corresponding decrease in total dissolved solutes between Days 7 and 10. Results suggest that oxalic acid accumulates under submergence possibly as a stabilizing osmolyte. The threshold for tolerance of the species under submergence is 7 days with membrane damage thereafter. Bassia diffusa would not survive prolonged submergence (> 7 days) but could survive submergence of short duration (< 7 days) through continuous underwater photosynthesis, accumulation of osmolytes such as oxalic acid and carotenoid, and maintenance of relative water content and succulence within control levels. When considered together, results showed that the two upper intertidal species were sensitive to waterlogging and would not survive complete submergence, whereas the lower intertidal species could in addition to its natural range, thrive in conditions typical of the upper intertidal range, namely prolonged dry conditions and high sediment salinity. These results have important implications for the future management of salt marshes under predicted climate change conditions. In permanently open South African estuaries, a landward migration of salt marsh will be possible if coastal squeeze is limited and the rate of landward recruitment is on par with sea level rise. In this case salt marsh species would retain their current zonation while shifting inland. Increased sea storms and saltwater intrusion could lead to high salinity concentration in the sediment and significantly reduce growth of salt-sensitive plants. In estuaries that are temporarily open to the sea, reduced freshwater inflow will result in an increase in mouth closure, high water levels, prolonged submergence, and consequently die back of salt marsh vegetation. On the other hand increased abstraction and drought would result in low water levels and high sediment salinity which would decrease growth and survival of salt marsh. This research has provided new knowledge on the ecophysiology of salt marsh plants which can be used to predict the responses of plants to climate change.
- Full Text:
- Date Issued: 2012
The further development, optimisation and application of a Yarn Dismantler
- Authors: Fassihi, Ali Akbar
- Date: 2012
- Subjects: Textile industry , Cotton yarn industry
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10452 , http://hdl.handle.net/10948/d1016066
- Description: The fibre properties of cotton, which vary widely according to genetic and environmental conditions, determine its price and textile processing performance and product quality. It is therefore hardly surprising that cotton fibre properties are routinely measured for trading and quality control purposes, with a great deal of research having been, and still being, devoted towards developing instruments which enable the various fibre properties to be measured rapidly and accurately. In many cases, it is also necessary to be able to measure properties of cotton fibres when they have already been converted into yarn and fabric form. To do so, the yarn has to be dismantled into its component fibres, preferably without significantly changing the fibre properties. This could only be done by manually untwisting the yarn and carefully extracting the fibres from the untwisted yarn, care being taken not to break or lose any fibres in the process. This is a time consuming, laborious and labour intensive process. In view of this, a „yarn dismantler‟ which could automatically, cost effectively and within acceptable time frames, dismantle a cotton yarn into its constituent fibres, without undue damage or changes to the fibres, was developed and patented. This thesis reports the results of research undertaken to further develop, evaluate and optimize the yarn dismantler into the final prototype, as well as those relating to its practical applications, including tracking changes in fibre properties during miniature and pilot scale processing, up to, and including the yarn stage. Initial research undertaken on the original bench and first prototype models indicated that, although they produced very promising results, certain improvements and modifications were necessary, if the dismantler was to perform in an efficient and operator friendly manner at the required speeds. These included changes in the axial position of the untwisting spindle and the perforated screen of the suction drum, increasing the air suction at the perforated drum, installing a new motor for the untwisting spindle drive, separating the drives to the different parts of the unit in order to control them independently, integrating a more effective steaming unit into the unit etc. It was found that the dismantling rate had to be set to equal about 95 percent of the original twist in the yarn, and that steaming of the dismantled (untwisted) yarn on the perforated drum was necessary in order to eliminate any twist liveliness (residual torque) in the dismantled yarn, and enable it to be handled and tested on the AFIS instrument. When the final prototype Yarn Dismantler was produced, incorporating all the above mentioned improvements, it functioned very well at dismantling speeds of at least 2m/min, enabling the length of yarn required for subsequent AFIS testing to be dismantled within an acceptable time of less than 10 minutes, with excellent reproducibility and repeatability of results, also under commercial conditions. It was found that the AFIS measured length characteristics of fibres from the instrument dismantled yarns compared very well with those of fibres from manually dismantled yarns, differences in fibre length generally being less than 1mm, and it was concluded from these and other evaluation tests, that the yarn dismantler produced fibres without any significant fibre breakage. Some limited tests, carried out on commercially produced carded and combed yarns, indicated that short fibre content and dust and trash levels, as measured by the AFIS on fibres from dismantled yarn, together with the corresponding Uster Statistics, could enable a carded cotton yarn to be distinguished from a combed cotton yarn. Statistical analysis of fibre test results obtained at the different stages during miniature and pilot plant scale processing of various cottons, clearly showed that very significant changes in fibre properties could be caused by certain of the processes. For example, significant fibre breakage occurred during the drafting on the spinning frame, prior to twist insertion. The thesis provides detailed results of changes in various fibre properties, including length, short fibre content, maturity, immature fibre content, seed coat neps and fibrous neps, which occurred from the lint to the final yarn, as well as on the relationship between the properties of the fibres from the dismantled yarn and those from the lint. The results obtained have clearly demonstrated the practical value of the yarn dismantler in enabling yarns to be automatically dismantled into their constituent fibres, which can then be tested by an instrument, such as the AFIS, and the test results related to those of the original lint fibres, thereby opening up many fields of research and practical applications, some of which are captured under „Recommended Further Work‟.
- Full Text:
- Date Issued: 2012
The past and present limnology of the Soetendalsvlei wetlands, Agulhas coast, South Africa
- Authors: Gordon, Nuette
- Date: 2012
- Subjects: Limnology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10619 , http://hdl.handle.net/10948/d1009430 , Limnology -- South Africa
- Description: As climatic conditions continue to change globally, there is a need to assess past environmental change in relation to changing water balance, temperature and sea-level. By understanding the extent of past environmental change, and how anthropogenic impacts have affected ecosystems, better and more accurate future predictions of change can be made. Through the use of the sedimentary record within coastal wetlands, geochemical, (organic content and stable isotopes) and biological (diatoms) proxies were utilised to determine; (i) the baseline water quality record for Soetendalsvlei, one of only a few coastal lakes in South Africa, (ii) the effect of agriculture and mouth manipulation of the Heuningnes Estuary on the microalgae ecology and (iii) the link between palaeo-salinity and trophic status on a regional basis between Soetendalsvlei and Groenvlei, situated 320 km apart. Present water quality and phytoplankton biomass and community structure were assessed for Soetendalsvlei and its associated wetlands, Voëlvlei and Waskraalsvlei to determine the current health of these systems and to obtain modern diatom analogues to be used in the palaeolimnological reconstruction of the coastal lake. Diatoms were not dominant during this study period. Chlorophytes and flagellates were the dominant phytoplankton groups throughout the different wetlands. With the exception of Voëlvlei, the wetlands were all in good health, although SRP concentrations were within the eutrophic to hypertrophic range and are cause for concern. In Voëlvlei, phytoplankton biomass was within the eutrophic range with chlorophyll a concentrations ranging between 20 – 400 ug.l-1 Cyanobacteria, a further indicator of eutrophic conditions, were dominant during the warmer summer periods. Rainfall and freshwater inflow had a significant effect on the biomass and composition of the phytoplankton and acted as a resetting mechanism for all the wetlands as water quality conditions improved thereafter. Comparisons of the water quality and phytoplankton community between the upper reaches of the Heuningnes Estuary and Soetendalsvlei, indicated that artificial breaching of the estuary mouth significantly impacted the connectivity between these two systems, with marine intrusion extending into the upper reaches, while freshwater conditions dominate in the coastal lake. Unfortunately for the palaeolimnological study diatom preservation was poor, however, geochemistry and stable isotope analyses did provide adequate evidence of marine transgression (~8000 yr BP and 4000-2000 yr BP) and regression events comparable to other South African sea-level models developed for the east and west coast. High organic matter content (i.e. higher trophic state) and estuarine POC (C4 vegetation) were associated with periods of marine regression, i.e. increased freshwater, whereas marine transgression events were associated with low organic content and marine POC and DOC. This is comparable to studies conducted in Uruguay (South America) where palaeo-salinity was related to trophic status, i.e. increased freshwater input was associated with high nutrients. Comparisons of the palaeo-record with recorded historical occurrences of droughts and floods, also provided a means of assessing the sedimentary record and to infer anthropogenic impacts after 1850 AD. Overall it can be concluded that coastal lakes of both continents in the Southern Hemisphere displayed similar trophic responses to sea-level fluctuations during the Holocene. This adds valuable information to global sea-level change models.
- Full Text:
- Date Issued: 2012
Development of MgZnO-grown MOCVD for UV Photonic applications
- Authors: Talla, Kharouna
- Date: 2011
- Subjects: Photoluminescence , Photonics , Zinc oxide
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10537 , http://hdl.handle.net/10948/d1012585 , Photoluminescence , Photonics , Zinc oxide
- Description: MgxZn1-xO has emerged as a material of great technological importance. Having a direct energy band gap that is tunable throughout much of the ultraviolet (UV) region of the spectrum from the near-UV (~370 nm) to the deep-UV (~176 nm), this compound is of interest for a variety of optoelectronic devices operating in this part of the electromagnetic spectrum. MgxZn1-xO offers advantages over the more mature compound semiconductor AlGaN which stem mainly from the unusually high exciton binding energy (60 meV in ZnO). In this study the growth of ZnO and MgxZn1-xO thin films using metal organic chemical vapour deposition (MOCVD) is systematically investigated. The films are mainly grown on c-Al2O3 and Si (100) and characterized using various techniques, such as photoluminescence (PL), x-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM) and auger electron spectroscopy (AES). The optical and the structural properties are essentially inspected in order to improve their quality. In this thesis the optimisation of ZnO grown using oxygen gas as a new oxidant in our reactor is investigated. The growth temperature and VI/II ratio are varied in order to find optimum parameters giving high quality layers. The effects of Si (100), Si (111), c- and r-sapphire, glass, GaAs and ZnO substrates on the optical, structural and morphological properties of ZnO thin films grown with tert-butanol (TBOH) is examined. Similar morphologies are observed for all substrates, with the films comprising hexagonal columns having cone shaped ends. The photoluminescence spectra are similar, but the various transitions have different relative intensities. It is clear that the different substrates influence neither the orientation of the films, nor the surface morphology, significantly. The photoluminescence hints at larger stacking fault densities in films grown on silicon and glass, however, as evidenced by stronger basal plane stacking fault-related luminescence at ~3.319 eV in the relevant low temperature photoluminescence spectra. The morphology changes with Mg incorporation, from hexagonal columnar structures to cubic faceted columns. From PL, the full with at half maximum is found to gradually increase with Mg content due to alloy broadening. The deep level emission (DLE) is observed to shift with Mg content. By changing the Mg content, the band gap of MgxZn1-xO film is tuned by ~450 meV, which provides an excellent opportunity for band gap engineering for optoelectronic applications. The c-lattice constant of ZnO (5.205 Å) decreases by only 0.6% when the Mg content reaches x=0.39. The introduction of Mg into ZnO is shown to increase the relative PL intensity of stacking fault-related transitions (at 3.314 eV for ZnO). This becomes the dominant near band edge emission. Using TEM a thin Mg rich layer is observed at the interface between the film and the Si or Al2O3. Temperature dependent PL measurements on layers with low Mg concentration (x=0.05 and 0.1) show that the main bound exciton peak exhibits an “s-shaped” temperature dependence, characteristic of localization in a disordered alloy. The origin of the PL line broadening of MgxZn1-xO (x≤0.04) is also analyzed with respect to alloy broadening, taking into account a random cation distribution and alloy clustering. The influence of various MOCVD growth parameters such as growth temperature and VI/II ratio is studied. Varying the temperature from 280 ˚C to 580 ˚C reveals strong morphological changes and optical degradation of the films. Low (<280 ˚C) and high (>580 ˚C) growth temperatures reduce the Mg incorporation. High VI/II ratios also decrease the Mg incorporation, as evidenced by the red-shift of the donor bound exciton (D°X) line. This is ascribed to a stronger premature reaction between (MeCp)2Mg and the oxidant or a preferential heterogeneous interaction between the Mg and oxygen species on the growth front. For both oxidizing agents (O2 and TBOH), the growth at 420 ˚C and a VI-II ratio of 60 on c-Al2O3 gave optimal quality layers in terms of their optical and structural quality. A comparison of films grown using TBOH and O2 gas as oxidizing agent shows no major difference in terms of Mg incorporation. The effect of annealing, the inclusion of a buffer layer and the influence of growth rate on the properties MgxZn1-xO thin films are also reported.
- Full Text:
- Date Issued: 2011
Effects of polarization in a distributed raman fibre amplifier
- Authors: Muguro, Kennedy Mwaura
- Date: 2011
- Subjects: Fiber optics , Polarization (Light) , Optical communications , Optical amplifiers , Raman effect
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10544 , http://hdl.handle.net/10948/d1014621
- Description: The need to exploit the large fibre bandwidth and increase the reach has seen the application of the Raman fibre amplifier (RFA) become indispensable in modern light wave systems. The success and resilience of RFAs in optical communication is deeply rooted in their unique optical properties and new technologies which have allowed the amplifier to come of age. However, the full potential of RFAs in optical communication and other applications are yet to be realized. More so are its polarization properties which still remain largely unexploited and have not been fully understood. In this work, fundamental issues regarding distributed RFA have been investigated with the aim of acquiring a better understanding of the amplifier polarization characteristics which have potential applications. In particular the effects of polarization mode dispersion (PMD) and polarization dependent loss (PDL) have been demonstrated both by simulation and experiment. The possibility of Raman polarization pulling in single mode fibres (SMFs) has also been addressed. Polarization sensitivity of RFA has been known for a long time but the clear manifestation of it has become evident in the advent of modern low PMD fibre. Unlike EDFAs which make use of special doped fibre, RFAs require no special fibre for operation. Besides, RFA uses a very long length of fibre and as such the fibre polarization characteristics come into play during amplification. In the demonstrations presented in this thesis a fibre of PMD coefficient < 0.05 pskm-1/2 was regarded as low PMD fibre while one having coefficient ≥ 0.05 pskm-1/2 was categorized to have high PMD unless otherwise stated. Several experiments were performed to evaluate the RFA gain characteristics with respect to fibre PMD and the system performance in the presence of noise emanating from amplified spontaneous emission (ASE). Analysis of Raman gain statistics was done for fibres of low and high PMD coefficients. The statistics of PDG and on-off gain were eventually used to demonstrate the extraction of PMD coefficients of fibres between 0.01- 0.1 pskm-1/2 using a forward pumping configuration. It was found that, at increasing pump power a linear relationship exists between forward and backward signal gain on a dB scale. The interaction of PDL and Raman PDG in the presence of PMD were observed at very fundamental level. It was found the presence of PDL serves to reduce the available on-off gain. It was also established that the presence of PMD mediates the interaction between PDG/PDL. When PMD is high it reduces PDG but the presence of PDL introduces a wavelength dependent gain tilting for WDM channels. Further analysis revealed that signal polarization is influenced by the pump SOP due to the pulling effect which is present even at moderate pump power.
- Full Text:
- Date Issued: 2011
Land use change, landslide occurrence and livelihood strategies on Mount Elgon Slopes, Eastern Uganda
- Authors: Mugagga, Frank
- Date: 2011
- Subjects: Land use -- Uganda -- Mount Elgon National Park , Landslides -- Uganda -- Mount Elgon National Park , Land degradation -- Uganda -- Mount Elgon National Park
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10646 , http://hdl.handle.net/10948/1468 , Land use -- Uganda -- Mount Elgon National Park , Landslides -- Uganda -- Mount Elgon National Park , Land degradation -- Uganda -- Mount Elgon National Park
- Description: An investigation of the relationship between the physical, pedological and anthropogenic influences on landslide occurrence on the midslopes within and outside Mt Elgon National Park was carried out. One of the landslides occurred in a protected pristine forest environment within the Park while the other two were located at sites deforested for cultivation within and outside the National Park. Field based surveys, GIS techniques and laboratory tests were used to collect and analyze the data. A household survey was undertaken to establish the main community livelihood strategies, the drivers of land use change and implications for land degradation on the mid slopes of Mt Elgon. Aerial photographs taken in 1960 and orthophoto maps formed the benchmark for the analysis of the respective land use changes between 1995 and 2006, using 30m Landsat TM and 20m SPOT MS images in IDRISI Andes GIS environment. Landslide sites were mapped using a Magellan Professional MobileMapperTMCX and terrain parameters were derived using a 15M Digital Elevation Model. A hybrid supervised/unsupervised classification approach was employed to generate land cover maps from which the areal extent of three land cover classes (agricultural fields, woodlands and forests) was calculated. Particle size distribution and atterberg limits were used to test the hypothesis that soils at the landslide sites are inherently ‘problem soils’ where slope failure can occur even without human intervention. Shear strength parameters (internal of friction and cohesion) were used calculate the slope factor of safety to ascertain slope stability at pristine and disturbed landslide sites. Results from the socio-economic survey revealed that smallholder subsistence agriculture and encroachment on the National Park resources are the main sources of livelihoods for the communities surrounding the Park. The communities also have a strong socio-cultural attachment to the National Park, as it is the source of items used during traditional rituals like circumcision. Encroachment is driven by the high population pressure and the prevalent political climate. Farmers mainly use slash and burn technique to prepare land for cultivation and those close to the National Park are reluctant to adopt appropriate farming and soil conservation practices due to the uncertainties surrounding their future on such plots. Slash and burn iii techniques were observed to accelerate various forms of erosion including rills, gullies and sheet. Soil and water conservation techniques were mainly practiced on privately owned farms. The period 1960 and 1995 was characterized by minimal land use changes and no encroachment into the designated Mount Elgon National Park. Conversely, the period 1995 – 2006 marked a significant loss of woodlands and forest cover particularly on steep concave slopes (36º – 58º) within the National Park. The land use change trends were attributed to the prevalent land politics and exponential population growth in the region. The encroachment onto the critical slopes was noted to have induced a series of shallow and deep landslides in the area. Deforestation on Mt Elgon was reported to have both onsite and offsite climate variability and implications in the form of drought, heat waves, flash floods, economic dislocation, crop failure and associated malnutrition in surrounding low lying areas. The soils on pristine and disturbed slopes contain high amount of clay (>10 percent), are fine textured (>50 percent of the material passing the 0.075mm sieve) and highly plastic. These soil attributes imply low permeability, excessive water retention and high susceptibility to expansion and sliding. The vertic nature of soils at Nametsi was confirmed by the extremely high plasticity indices (averaging 33percent), while, high liquid limits at Buwabwala (53 percent) and Kitati (59 percent) qualified the soils as vertisols which are associated with landslides. The results point to the fact that soils at landslide sites are inherently ‘problem soils’ where slope failure can occur even without human intervention. Therefore, the hypothesis that soils at three landslide sites are inherently ‘problem soils’ where slope failure can occur even without human intervention is accepted. Notwithstanding the fact that the study was focussed on mid-altitude slopes of Mt Elgon, the results are in tandem with investigations carried out earlier on the lower densely populated slopes, thus confirming the widespread nature of problem soils on Mt Elgon. There is an urgent need to control human population growth and restore forest cover on the heavily deforested steep slopes particularly within the National Park, and restrain communities from encroaching on the pristine slopes of Mt Elgon. This will be achieved if the politicians, Park Authorities and local communities jointly participate in the design and implementation of CFMs. Future research could focus on climate change implications of deforestation of Mt Elgon environments and quantification of carbon loss related to deforestation and soil degradation in the mountain environments.
- Full Text:
- Date Issued: 2011
Land use/cover change modelling and land degradation assessment in the Keiskamma catchment using remote sensing and GIS
- Authors: Mhangara, Paidamwoyo
- Date: 2011
- Subjects: Land use -- South Africa -- Eastern Cape , Land degradation -- South Africa -- Eastern Cape , Keiskamma River (South Africa)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10647 , http://hdl.handle.net/10948/1467 , Land use -- South Africa -- Eastern Cape , Land degradation -- South Africa -- Eastern Cape , Keiskamma River (South Africa)
- Description: Land degradation in most communal parts of the Keiskamma catchment has reached alarming proportions. The Keiskamma catchment is particularly predisposed to severe land degradation associated with soil erosion, thicket degradation and deteriorating riparian vegetation. There is a close coupling between land use/cover dynamics and degradation trends witnessed in the catchment. Soil erosion is prevalent in most of the communal areas in the catchment. The principal aim of this study was to investigate land use/cover trends, model the spatial patterns of soil loss and predict future land use/cover scenarios as a means of assessing land degradation in the Keiskamma catchment. Multi-temporal Landsat satellite imagery from 1972 to 2006 was used for land use/cover change analyses using object-oriented post-classification comparison. Fragmentation analysis was performed by computing and analyzing landscape metrics in the riparian and adjacent hillslope areas to determine the land cover structural changes that have occurred since 1972. The landscape function analysis was used to validate the current rangeland conditions in the communal areas and the former commercial farms. The current condition of the riparian zones and proximal hillslopes was assessed using the Rapid Appraisal of Riparian Condition and future land use/cover scenarios were simulated using the Markovcellular automata model. Spatial patterns of soil loss in the Keiskamma catchment were determined using the Sediment Assessment Tool for Effective Erosion Control (SATEEC), which is a GIS based RUSLE model that integrates sediment delivery ratios. Object oriented classification was used to map soil erosion surfaces and valley infill in ephemeral stream channels as a means of demonstrating the major sediment transfer processes operating in the Keiskamma catchment. The Mahalanobis distance method was used to compute the topographic thresholds for gully erosion. To understand the effect of soil characteristics in severe forms of erosion, laboratory analyses were undertaken to determine the physico-chemical soil properties. iv The temporal land use/cover analysis done using the post-classification change detection indicated that intact vegetation has undergone a significant decline from 1972 to 2006. The temporal changes within the intermediate years are characterized by cyclic transitions of decline and recovery of intact vegetation. An overall decline in intact vegetation cover, an increase in degraded vegetation and bare eroded soil was noted. Fragmentation analyses done in the communal villages of the central Keiskamma catchment indicated increasing vegetation fragmentation manifested by an increase in smaller and less connected vegetation patches, and a subsequent increase of bare and degraded soil patches which are much bigger and more connected. The Landscape Organisation Index revealed very low vegetation connectivity in the communal rangelands that have weak local traditional institutions. Fragmentation analyses in the riparian and proximal hillslopes revealed evidence of increasing vegetation fragmentation from 1972 to 2006. The Markov Cellular Automata simulation predicted a decline in intact vegetation and an increase in bare and degraded soil in 2019. The Keiskamma catchment was noted as experiencing high rates of soil loss that are above provincial and national averages. The classification of erosion features and valley infill showcased the vegetation enrichment in the ephemeral streams which is occurring at the expense of high soil losses from severe gully erosion on the hillslopes. This in turn has led to an inversion of grazing patterns within the catchment, such that grazing is now concentrated within the ephemeral stream channels. Soil chemical analyses revealed a high sodium content and low soluble salt concentration, which promote soil dispersion, piping and gully erosion. The presence of high amounts of illite-smectite in the catchment also accounts for the highly dispersive nature of the soil even at low SAR values. Significant amounts of swelling 2:1 silicate clays such as smectites cause cracking and contribute to the development of piping and gullying in the catchment. Given the worsening degradation trends in the communal areas, a systematic re-allocation of state land in sections of the catchment that belonged to the former commercial farms is recommended to alleviate anthropogenic pressure. Strengthening local institutions that effectively monitor and manage natural resources will be required in order to maintain v optimum flow regimes in rivers and curb thicket degradation. Measures to curb environmental degradation in the Keiskamma catchment should encompass suitable ecological interventions that are sensitive to the socio-economic challenges facing the people in communal areas.
- Full Text:
- Date Issued: 2011
Macrophytes as indicators of physico-chemical factors in South African Estuaries
- Authors: Bezuidenhout, Chantel
- Date: 2011
- Subjects: Estuarine ecology -- South Africa , Aquatic plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10597 , http://hdl.handle.net/10948/1387 , Estuarine ecology -- South Africa , Aquatic plants -- South Africa
- Description: This study investigated the response of macrophytes to physico-chemical factors in seven South African estuaries and showed that dominant salt marsh species that occur in different estuaries respond to the same environmental factors. The most important variables influencing distribution were elevation, water level, sediment- and groundwater electrical conductivity and depth to the water table. In permanently open estuaries (Kromme and Olifants) transect surveys identified three distinct vegetation zones i.e. submerged macrophytes, intertidal salt marsh and supratidal salt marsh. In the Kromme Estuary intertidal salt marsh (81.2 ha) covered extensive areas, whereas supratidal (143 ha) and floodplain (797.1 ha) salt marsh were dominant in the Olifants Estuary. Transect surveys identified four distinct vegetation zones (submerged macrophytes, intertidal salt marsh, supratidal salt marsh and reeds and sedges) in the temporarily open/closed estuaries (Mngazi, Great Brak, East Kleinemonde and Seekoei estuaries), although all zones did not occur in all of the estuaries sampled. In the Mngazi Estuary reeds and sedges (1.09 ha) covered extensive areas (no submerged or salt marsh vegetation was present), whereas salt marsh (Great Brak 24.45 ha, East Kleinemonde 17.44 ha and Seekoei 12.9 ha) vegetation was dominant in the other estuaries. Despite the geographic differences, environmental factors influencing macrophyte distribution were similar in all estuaries. Canonical Correspondence Analysis showed that vegetation distribution was significantly affected by elevation, groundwater and sediment electrical conductivity and depth to groundwater. Supratidal species were associated with a greater depth to groundwater (1.2 ± 0.04 m; n = 153) compared to intertidal species (0.5 ± 0.01 m; n = 361). Correlation analysis showed that water level and rainfall were correlated with groundwater electrical conductivity in the lower and upper intertidal zones for all the estuaries sampled. These data indicate the influence of the estuary channel on the physico-chemical conditions of the salt marsh. Low rainfall (16 ± 3.3 mm per annum) in the Olifants Estuary (30-100 mS cm-1) and lack of freshwater flooding in the Kromme Estuary (42-115 mS cm-1) have resulted in high sediment electrical conductivity by comparison with the other estuaries sampled. In the Orange River Estuary approximately 70 ha of salt marsh have been lost through the building of a causeway and flood control levees. Even though salt marsh vegetation can tolerate hypersaline sediments by using the less saline water table, the groundwater at the Orange River Estuary was too saline (avg. of 90.3 ± 6.55 mS cm-1, n = 38) to be of use to the dominant floodplain species, Sarcocornia pillansii. Freshwater inflow to estuaries is important in maintaining longitudinal salinity gradients and reducing hypersaline conditions. In the Olifants Estuary and the Orange River Estuary where supratidal salt marsh is dominant, freshwater inflow is important in raising the water level and maintaining the depth to groundwater and salinity. Lack of freshwater inflow to the Kromme Estuary has highlighted the importance of rainfall in maintaining sediment salinity within acceptable ranges for the salt marsh. Macrophytes are relatively good indicators of physico-chemical factors in estuaries. From an understanding of the response of specific species to environmental variables, ecological water requirements can be set and sensitive areas can be rehabilitated.
- Full Text:
- Date Issued: 2011
Mutational analysis of the PacC binding sites within the aflR promoter in Aspergillus flavus
- Authors: Suleman, Essa
- Date: 2011
- Subjects: Mutation (Biology) , Genetic regulation , Proteins -- Synthesis , Microbiological synthesis
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10336 , http://hdl.handle.net/10948/d1012683 , Mutation (Biology) , Genetic regulation , Proteins -- Synthesis , Microbiological synthesis
- Description: It is generally known that media containing simple sugars (sucrose, glucose) and organic nitrogen sources (ammonium) when buffered to acidic pH stimulates aflatoxin production in Aspergillus flavus & A. parasiticus while lactose, nitrate and an alkaline pH inhibit aflatoxin biosynthesis. It has been shown that pH of the growth medium is the most important regulatory factor for aflatoxin biosynthesis since media containing stimulatory carbon and/or nitrogen sources (sucrose and ammonia) do not enhance aflatoxin (or sterigmatocystin) production at alkaline pH. RNA interference (in A. flavus) of the pH regulatory transcription factor, PacC, resulted in aflatoxin production under acidic and alkaline pH conditions whilst wildtype Aspergillus flavus produced aflatoxins only under acidic conditions. This conclusively proved that PacC negatively regulates aflatoxin production at alkaline pH in A. flavus. However the exact mechanism involved in PacC repression of aflatoxin biosynthesis at alkaline pH still remains unknown. The AflR protein is essential for expression of several genes in the aflatoxin biosynthetic cluster. In the current study, sequence analysis of the aflR promoter indicated the presence of two putative PacC binding sites within the aflR promoter of A. flavus 3357WT located at positions -162 and -487 bp from the start codon. The presence of the PacC binding sites in the aflR promoter indicated a possible link between aflR expression and PacC regulation under alkaline conditions. Thus, in this study, it was hypothesized that at alkaline pH, PacC inhibits aflR expression by binding to one or both of the PacC binding sites within the aflR promoter. This in turn, would result in inhibition of aflatoxin biosynthesis since expression of several aflatoxin biosynthetic pathway genes is dependent on activation by AflR. The aim and objective of this study was to test the validity of this hypothesis i.e. that at alkaline pH PacC binds to one or both of its recognition sites within the aflR promoter thereby inhibiting aflR expression which subsequently would result in inhibition of aflatoxin biosynthesis. This was done by first mutating each individual and then both PacC binding sites in the A. flavus 3357 aflR promoter via Single-Joint PCR (SJ-PCR) and fusing the wildtype and each mutated aflR promoter to the Green Fluorescent Protein (gfp) gene and the trpC terminator to yield a functional expression vector. These constructs were then transformed into A. flavus 3357.5. Positive transformants were confirmed to express GFP by fluorescence microscopy and spectrofluorometry. Quantification of GFP protein levels of the various transformants in this study indicated that PacC negatively regulated aflR promoter activity at alkaline pH. RT-qPCR was performed on positive transformants after growth on SLS medium at acidic and alkaline pH to determine if PacC negatively regulated aflR promoter activity at alkaline pH and to determine whether PacC binds preferentially to one or both recognition sites within the aflR promoter. RT-qPCR analysis suggest that PacC binds non-preferentially to both recognition sites within the aflR promoter on sucrose and lactose media at alkaline pH, although mutation of PacC binding site 2 results in a slightly higher expression compared to mutation of PacC binding site 1. Increasing the concentration of an aflatoxin conducive nitrogen source stimulated aflR promoter activity but this was not sufficient to overcome negative regulation by PacC. It is generally known that repression of aflR expression results in repression of aflatoxin biosynthesis irrespective of pH. The results of this study strongly suggest that PacC negatively regulates aflR promoter activity at alkaline pH by binding to one or both PacC recognition sites within the aflR promoter. Since aflR promoter activity is repressed by PacC at alkaline pH, this substantiates the hypothesis that PacC represses aflatoxin biosynthesis by inhibiting expression of aflR. Furthermore, the results of this study indicated that there may be some PacC protein present in the active form at acidic pH irrespective of the carbon source and nitrogen source used in the growth medium. RT-qPCR analysis indicated that any active PacC present at acidic pH may cause repression of the aflR promoter based on the position of the PacC binding site relative to the aflR start codon, although it appears that PacC may have a higher affinity for PacC binding site 2 (which is closer to the aflR start codon).
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- Date Issued: 2011
Repulsive-attractive models for the impact of two predators on prey species varying in anti-predator response
- Authors: Ddumba, Hassan
- Date: 2011
- Subjects: Predation (Biology) -- Mathematical models , Wildlife management -- Mathematical models , Pattern formation (Biology) , Predatory animals -- Ecology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10506 , http://hdl.handle.net/10948/d1010995 , Predation (Biology) -- Mathematical models , Wildlife management -- Mathematical models , Pattern formation (Biology) , Predatory animals -- Ecology
- Description: This study considers the dynamical interaction of two predatory carnivores (Lions (Panthera leo) and Spotted Hyaenas (Crocuta crocuta)) and three of their common prey (Buffalo (Syncerus caffer), Warthog (Phacochoerus africanus) and Kudu (Tragelaphus strepsiceros)). The dependence on spatial structure of species’ interaction stimulated the author to formulate reaction-diffusion models to explain the dynamics of predator-prey relationships in ecology. These models were used to predict and explain the effect of threshold populations, predator additional food and prey refuge on the general species’ dynamics. Vital parameters that model additional food to predators, prey refuge and population thresholds were given due attention in the analyses. The stability of a predator-prey model for an ecosystem faced with a prey out-flux which is analogous to and modelled as an Allee effect was investigated. The results highlight the bounds for the conversion efficiency of prey biomass to predator biomass (fertility gain) for which stability of the three species ecosystem model can be attained. Global stability analysis results showed that the prey (warthog) population density should exceed the sum of its carrying capacity and threshold value minus its equilibrium value i.e., W >(Kw + $) −W . This result shows that the warthog’s equilibrium population density is bounded above by population thresholds, i.e., W < (Kw+$). Besides showing the occurrence under parameter space of the so-called paradox of enrichment, early indicators of chaos can also be deduced. In addition, numerical results revealed stable oscillatory behaviour and stable spirals of the species as predator fertility rate, mortality rate and prey threshold were varied. The stabilising effect of prey refuge due to variations in predator fertility and proportion of prey in the refuge was studied. Formulation and analysis of a robust mathematical model for two predators having an overlapping dietary niche were also done. The Beddington-DeAngelis functional and numerical responses which are relevant in addressing the Principle of Competitive Exclusion as species interact were incorporated in the model. The stabilizing effect of additional food in relation to the relative diffusivity D, and wave number k, was investigated. Stability, dissipativity, permanence, persistence and periodicity of the model were studied using the routine and limit cycle perturbation methods. The periodic solutions (b 1 and b 3), which influence the dispersal rate (') of the interacting species, have been shown to be controlled by the wave number. For stability, and in order to overcome predator natural mortality, the nutritional value of predator additional food has been shown to be of high quality that can enhance predator fertility gain. The threshold relationships between various ecosystem parameters and the carrying capacity of the game park for the prey species were also deduced to ensure ecosystem persistence. Besides revealing irregular periodic travelling wave behaviour due to predator interference, numerical results also show oscillatory temporal dynamics resulting from additional food supplements combined with high predation rates.
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- Date Issued: 2011
Thermal degradation of diamond compacts: a TEM investigation
- Authors: Westraadt, Johan Ewald
- Date: 2011
- Subjects: Materials -- Thermal properties Chemical weathering
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/10829 , vital:26827
- Description: Diamond compacts consist of fine diamond grains bonded together by using high pressure and high temperature. In this study transmission electron microscopy (TEM)was used to study thermal degradation of diamond compacts. Three different types of diamond compacts – namely cobalt polycrystalline diamond (PCD), calcium carbonate PCD, and diamond-SiC composites – were investigated with TEM to understand the processes that occur during synthesis. These compacts were then heated in inert atmospheres and the chemical changes studied with TEM. It was found that PCD, using cobalt as a bonding agent, will degrade after exposure to temperatures above 750ºC. The cobalt pools contain tungsten in solid solution. During heat treatment above 700ºC the solid solution tungsten combines with cobalt and dissolved carbon to form η-phase particles at the cobalt/diamond interface. At higher temperatures or insufficient tungsten levels the rate of dissolved carbon, into the cobalt pool, is too high and the excess carbon will form as graphite in the cobalt pool. Increased levels of solid solution tungsten, in the cobalt, is expected to delay the onset of graphitization in the diamond compact, thereby increasing the thermal stability of the diamond compact. Non-metallic PCD using calcium carbonate as a bonding agent was successfully sintered in this study. TEM revealed similar micro-structural features as in cobalt based PCD. No signs of thermal degradation were found after exposure to 1200ºC in vacuum for this PCD. Contaminants introduced during processing prevented a detailed study of the binder in this system. The effect of substitutional metal atoms and plastic deformation of diamond on the thermal stability of diamond-SiC composites were investigated. A piston cylinder press was developed and used to synthesize diamond-SiC composites with different levels of plastically deformed diamond. It was concluded that substitutional metal atoms and plastic deformation of diamond grains play no role in the thermal degradation of diamond compacts at 750ºC. The thermal degradation of cobalt PCD is therefore completely determined by the cobalt/diamond interaction at 750ºC.
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- Date Issued: 2011