The effect of the Xpert MTB/RIF test on the time to MDR-TB treatment initiation in a rural setting: a cohort study in South Africa’s Eastern Cape Province
- Iruedo, Joshua, O’Mahony , Don, Mabunda, Sikhumbuzo A, Wright, Graham, Cawe , Busisiwe
- Authors: Iruedo, Joshua , O’Mahony , Don , Mabunda, Sikhumbuzo A , Wright, Graham , Cawe , Busisiwe
- Date: 2017
- Subjects: South Africa Multidrug-resistant tuberculosis Computer File
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/6098 , vital:45115 , https://DOI10.1186/s12879-017-2200-8
- Description: Background: There are significant delays in initiation of multidrug-resistant tuberculosis (MDR –TB) treatment. The Xpert MTB/RIF test has been shown to reduce the time to diagnosis and treatment of MDR-TB predominantly in urban centres. This study describes the time to treatment of MDR-TB and the effect of Xpert MTB/RIF on time to treatment in a deprived rural area in South Africa. Methods: This was a retrospective cohort study analysing the medical records of patients diagnosed with MDR-TB in King Sabata Dalindyebo Sub-District between 2009 and 2014. Numerical data were reported using the Kruskal-Wallis and Wilcoxon sum rank tests and categorical data compared using the two-sample test of proportions. Results: Of the 342 patients with MDR-TB identified, 285 were eligible for analysis, of whom 145 (61.4%) were HIV positive. The median time from sputum collection to MDR-TB diagnosis was 27 days (IQR: 2–45) and differed significantly between diagnostic modalities: Xpert MTB/RIF, 1 day (IQR: 1–4; n = 114: p less 0.0001); Line Probe Assay 12 days (IQR: 8–21; n = 28; p less 0.0001); and culture/phenotypic drug sensitivity testing 45 days (IQR: 39–59; n = 143: p less 0.0001). The time from diagnosis to treatment initiation was 14 days (IQR: 8–27) and did not differ significantly between diagnostic modality. The median time from sputum collection to treatment initiation was 49 days (IQR: 20–69) but differed significantly between diagnostic modalities: Xpert MTB/RIF, 18 days (IQR: 11–27; n = 114; p less 0.0001); Line Probe Assay 29 days (IQR: 14.5–53; n = 28; p les 0.0001); and culture/phenotypic drug sensitivity, 64 days (IQR: 50–103; n = 143: P less 0.0001). Age, sex and HIV status did not influence the time intervals. Conclusions: Xpert MTB/RIF significantly reduced the time to MDR-TB treatment in a deprived rural setting as a result of a reduced time to diagnosis. However, the national target of five days was not achieved. Further research is needed to explore and address programmatic and patient-related challenges contributing to delayed treatment initiation. Keywords: Xpert MTB/RIF, MDR-TB, Rural, Time-to-treatment, Cohort study
- Full Text:
- Date Issued: 2017
- Authors: Iruedo, Joshua , O’Mahony , Don , Mabunda, Sikhumbuzo A , Wright, Graham , Cawe , Busisiwe
- Date: 2017
- Subjects: South Africa Multidrug-resistant tuberculosis Computer File
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/6098 , vital:45115 , https://DOI10.1186/s12879-017-2200-8
- Description: Background: There are significant delays in initiation of multidrug-resistant tuberculosis (MDR –TB) treatment. The Xpert MTB/RIF test has been shown to reduce the time to diagnosis and treatment of MDR-TB predominantly in urban centres. This study describes the time to treatment of MDR-TB and the effect of Xpert MTB/RIF on time to treatment in a deprived rural area in South Africa. Methods: This was a retrospective cohort study analysing the medical records of patients diagnosed with MDR-TB in King Sabata Dalindyebo Sub-District between 2009 and 2014. Numerical data were reported using the Kruskal-Wallis and Wilcoxon sum rank tests and categorical data compared using the two-sample test of proportions. Results: Of the 342 patients with MDR-TB identified, 285 were eligible for analysis, of whom 145 (61.4%) were HIV positive. The median time from sputum collection to MDR-TB diagnosis was 27 days (IQR: 2–45) and differed significantly between diagnostic modalities: Xpert MTB/RIF, 1 day (IQR: 1–4; n = 114: p less 0.0001); Line Probe Assay 12 days (IQR: 8–21; n = 28; p less 0.0001); and culture/phenotypic drug sensitivity testing 45 days (IQR: 39–59; n = 143: p less 0.0001). The time from diagnosis to treatment initiation was 14 days (IQR: 8–27) and did not differ significantly between diagnostic modality. The median time from sputum collection to treatment initiation was 49 days (IQR: 20–69) but differed significantly between diagnostic modalities: Xpert MTB/RIF, 18 days (IQR: 11–27; n = 114; p less 0.0001); Line Probe Assay 29 days (IQR: 14.5–53; n = 28; p les 0.0001); and culture/phenotypic drug sensitivity, 64 days (IQR: 50–103; n = 143: P less 0.0001). Age, sex and HIV status did not influence the time intervals. Conclusions: Xpert MTB/RIF significantly reduced the time to MDR-TB treatment in a deprived rural setting as a result of a reduced time to diagnosis. However, the national target of five days was not achieved. Further research is needed to explore and address programmatic and patient-related challenges contributing to delayed treatment initiation. Keywords: Xpert MTB/RIF, MDR-TB, Rural, Time-to-treatment, Cohort study
- Full Text:
- Date Issued: 2017
The effects of a lion (Panthera Leo) re-introduction on a resident cheetah (Acinonyx Jubatus) population In Mountain Zebra National Park, Eastern Cape, South Africa
- Authors: Van de Vyver, Daniel
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7420 , vital:21259
- Description: The global decline of large (> 10 kg) carnivores has resulted in a variety of conservation measures being put into practice to prevent extinctions. The establishment of predator-proof fences around protected areas has been a successful tool for reducing human-predator conflict. Furthermore, the re-introduction of large carnivores into small (< 1 000 km²), enclosed reserves has aided in the conservation of many species. Cheetahs (Acinonyx jubatus) and lions (Panthera leo) have benefitted from such re-introductions. The re-introduction of cheetahs before lions into the Mountain Zebra National Park (MZNP) in the Eastern Cape Province of South Africa provided a unique opportunity to study the effects of lions on an already established cheetah population. Spatial data were downloaded remotely from GPS collared individuals (n=4) and cheetah kill data were collected using the GPS cluster method before (2012-2013) and after (2013-2014) the lion (n=3) re-introduction. The same methods were used for lion kill data collection once they had been re-introduced. In general, cheetah home range size did not change after the lion re-introduction. Cheetahs selected areas with a combination of open and closed vegetation covers, while lions selected either open or closed areas of vegetation covers. In addition, as vegetation cover became thicker, the presence of cheetahs decreased. The cheetahs preyed upon seven species before and 11 species after the lion re-introduction. Medium sized prey comprised the bulk of the cheetah diet with kudu (Tragelaphus strepsiceros) and springbok (Antidorcas marsupialis) being the preferred species both before and after the lion re-introduction. The lion diets consisted of medium to large sized prey, with the male lions selecting eland (Tragelaphus oryx) and buffalo (Syncerus caffer) and the lioness selecting red hartebeest (Alcelaphus buselaphus). The cheetahs had no significant dietary overlap with the lions and there was only one record of kleptoparasitism. The results of my study indicate that cheetahs are able to co-exist with lions when lions are at low densities in an enclosed reserve. The cheetahs did not experience landscape-level displacement because they made fine-scale adjustments to avoid lions within their environment. This adaptability may have important management implications for future re-introductions of cheetahs into enclosed game reserves.
- Full Text:
- Date Issued: 2017
- Authors: Van de Vyver, Daniel
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7420 , vital:21259
- Description: The global decline of large (> 10 kg) carnivores has resulted in a variety of conservation measures being put into practice to prevent extinctions. The establishment of predator-proof fences around protected areas has been a successful tool for reducing human-predator conflict. Furthermore, the re-introduction of large carnivores into small (< 1 000 km²), enclosed reserves has aided in the conservation of many species. Cheetahs (Acinonyx jubatus) and lions (Panthera leo) have benefitted from such re-introductions. The re-introduction of cheetahs before lions into the Mountain Zebra National Park (MZNP) in the Eastern Cape Province of South Africa provided a unique opportunity to study the effects of lions on an already established cheetah population. Spatial data were downloaded remotely from GPS collared individuals (n=4) and cheetah kill data were collected using the GPS cluster method before (2012-2013) and after (2013-2014) the lion (n=3) re-introduction. The same methods were used for lion kill data collection once they had been re-introduced. In general, cheetah home range size did not change after the lion re-introduction. Cheetahs selected areas with a combination of open and closed vegetation covers, while lions selected either open or closed areas of vegetation covers. In addition, as vegetation cover became thicker, the presence of cheetahs decreased. The cheetahs preyed upon seven species before and 11 species after the lion re-introduction. Medium sized prey comprised the bulk of the cheetah diet with kudu (Tragelaphus strepsiceros) and springbok (Antidorcas marsupialis) being the preferred species both before and after the lion re-introduction. The lion diets consisted of medium to large sized prey, with the male lions selecting eland (Tragelaphus oryx) and buffalo (Syncerus caffer) and the lioness selecting red hartebeest (Alcelaphus buselaphus). The cheetahs had no significant dietary overlap with the lions and there was only one record of kleptoparasitism. The results of my study indicate that cheetahs are able to co-exist with lions when lions are at low densities in an enclosed reserve. The cheetahs did not experience landscape-level displacement because they made fine-scale adjustments to avoid lions within their environment. This adaptability may have important management implications for future re-introductions of cheetahs into enclosed game reserves.
- Full Text:
- Date Issued: 2017
The effects of expansive shrubs on plant species richness and soils in semi-arid communal lands, South Africa
- Sholto-Douglas, Craig, Shackleton, Charlie M, Ruwanza, Sheunesu, Dold, Tony
- Authors: Sholto-Douglas, Craig , Shackleton, Charlie M , Ruwanza, Sheunesu , Dold, Tony
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/398394 , vital:69408 , xlink:href="https://doi.org/10.1002/ldr.2745"
- Description: Expansion by expansive species can have severe ecological, social and economic impacts through the reduction of ecosystem goods and services and species richness. However, expansion by expansive species may also offer benefits to ecosystems and humans, through the supply of ecosystem goods and services (such as firewood, fodder and fruits), as well as potentially offering refugia in heavily used landscapes. Here, we examine the effects of four expansive dwarf shrub species (Aspalathus subtingens, Dicerothamnus rhinocerotis, Pteronia incana and Oedera genistifolia) on plant species richness (at the point scale), vegetation cover, soil properties and whether the expansive species offer refugia to other species. Plant species richness, cover and soil properties were recorded in 1-m2 quadrats located within a mosaic of expanded and non-expanded patches for the four expansive shrub species. Plant species richness was significantly higher in the non-expanded areas compared to the expanded ones for all four expansive species. Some of the expansive shrubs provided refugia to certain plant species and limited the frequency of other species. With regard to species composition, there was little separation of expanded and non-expanded samples within sites, indicating that the site factors were stronger determinants of plant species richness and composition than expansion. Therefore, it is more likely that the reduction in species richness in expanded sites is caused by multiple drivers, including vegetation attributes cover, litter cover and soil nutrients (organic C, Zn and P) and soil compaction.
- Full Text:
- Date Issued: 2017
- Authors: Sholto-Douglas, Craig , Shackleton, Charlie M , Ruwanza, Sheunesu , Dold, Tony
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/398394 , vital:69408 , xlink:href="https://doi.org/10.1002/ldr.2745"
- Description: Expansion by expansive species can have severe ecological, social and economic impacts through the reduction of ecosystem goods and services and species richness. However, expansion by expansive species may also offer benefits to ecosystems and humans, through the supply of ecosystem goods and services (such as firewood, fodder and fruits), as well as potentially offering refugia in heavily used landscapes. Here, we examine the effects of four expansive dwarf shrub species (Aspalathus subtingens, Dicerothamnus rhinocerotis, Pteronia incana and Oedera genistifolia) on plant species richness (at the point scale), vegetation cover, soil properties and whether the expansive species offer refugia to other species. Plant species richness, cover and soil properties were recorded in 1-m2 quadrats located within a mosaic of expanded and non-expanded patches for the four expansive shrub species. Plant species richness was significantly higher in the non-expanded areas compared to the expanded ones for all four expansive species. Some of the expansive shrubs provided refugia to certain plant species and limited the frequency of other species. With regard to species composition, there was little separation of expanded and non-expanded samples within sites, indicating that the site factors were stronger determinants of plant species richness and composition than expansion. Therefore, it is more likely that the reduction in species richness in expanded sites is caused by multiple drivers, including vegetation attributes cover, litter cover and soil nutrients (organic C, Zn and P) and soil compaction.
- Full Text:
- Date Issued: 2017
The effects of rhizobium inoculation on growth performance, forage production, nutrient and anti-nutrient content of lablab purpureus cultivars
- Senti, Sibongile Portia https://orcid.org/0000-0003-4906-9570
- Authors: Senti, Sibongile Portia https://orcid.org/0000-0003-4906-9570
- Date: 2017
- Subjects: Livestock productivity , Rhizobium japonicum
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/22864 , vital:53011
- Description: Declining soil fertility and inadequate low quality feed resources limit smallholder livestock production in the semi-arid regions of Eastern Cape in South Africa. Smallholder farmers are facing problems of high cost of artificial fertilisers limiting them in production of cereal crops and also fodder for their livestock. This leads to poor nutrition, particularly in the dry season, it affects livestock production. Planting Lablab purpureus and inoculating with Rhizobium would limit the necessity for buying expensive protein supplements and nitrogen fertilisers. Lablab purpureus can provide feed in the dry season for the improvement of livestock production. The objective of this study was to investigate the effect of Bradyrhizobium japonicum inoculation on growth performance, biomass production, nutrient and anti-nutrient content of the two Lablab purpureus cultivars (Rongai and Highworth). The experiment was conducted at Fort Hare Research Farm in Alice, South Africa. Data was collected on plant seedling emergence, plant height, stem diameter, plant vigour, chlorophyll content, nodule numbers as well as dry matter content, biomass yield, nutrient and anti-nutrient contents at 30, 60 and 90 DAP. Samples of Lablab purpureus were harvested at flowering stage and analysed for dry matter content, biomass yield, chemical, mineral and anti-ntrient composition. The results showed that Rhizobium inoculation significantly increased (p<0.05) seedling emergence, plant height and stem diameter of both Lablab purpureus cultivars. Rhizobium inoculation had no significant effect (p>0.05) on chlorophyll content for both cultivars. Highworth had significantly higher (p<0.05) plant vigour than Rongai on both inoculated and uninoculated. Varieties and inoculation effects were significant (p<0.05) for number of nodules, nodulation rate, active nodules and nodule dry yield. Rhizobium inoculation significantly (p<0.05) increased fresh matter yield, dry matter yied and dry matter content on both cultivars. There were no significant differences (p>0.05) in NDF, ADIN, ADL, ADF, and Na between inoculated and uninoculated plants for both cultivars. The inoculation of Rhizobium improved CP (15.65%) in Highworth cultivar. The inoculation of Rhizobium significantly increased Ca (1.76-1.84%), Zn (191.91-2 8.33ppm) and Cu (3.50-6.16ppm) compared to un-inoculated plants. Varieties and Rhizobium had no interaction (p>0.05) with condensed tannin, hydrolysable tannin, total polyphenols and saponins . Therefore, the Rhizobium inoculation assisted in improving quality in terms of nutrient composition and decreasing anti-nutrients. It is recommended to use both cultivars of Lablab purpureus. Based on the results of this study it is concluded that Rhizobium inoculation increases yield and forage quality of Lablab purpureus. It is recommended that Highworth cultivar can be used by communal farmers in the Eastern Cape. This cultivar showed that it needs Rhizobium inoculation inorder to produce high quality that can increase livestock production. , Thesis (MSc) -- Faculty of Science and Agriculture, 2017
- Full Text:
- Date Issued: 2017
- Authors: Senti, Sibongile Portia https://orcid.org/0000-0003-4906-9570
- Date: 2017
- Subjects: Livestock productivity , Rhizobium japonicum
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/22864 , vital:53011
- Description: Declining soil fertility and inadequate low quality feed resources limit smallholder livestock production in the semi-arid regions of Eastern Cape in South Africa. Smallholder farmers are facing problems of high cost of artificial fertilisers limiting them in production of cereal crops and also fodder for their livestock. This leads to poor nutrition, particularly in the dry season, it affects livestock production. Planting Lablab purpureus and inoculating with Rhizobium would limit the necessity for buying expensive protein supplements and nitrogen fertilisers. Lablab purpureus can provide feed in the dry season for the improvement of livestock production. The objective of this study was to investigate the effect of Bradyrhizobium japonicum inoculation on growth performance, biomass production, nutrient and anti-nutrient content of the two Lablab purpureus cultivars (Rongai and Highworth). The experiment was conducted at Fort Hare Research Farm in Alice, South Africa. Data was collected on plant seedling emergence, plant height, stem diameter, plant vigour, chlorophyll content, nodule numbers as well as dry matter content, biomass yield, nutrient and anti-nutrient contents at 30, 60 and 90 DAP. Samples of Lablab purpureus were harvested at flowering stage and analysed for dry matter content, biomass yield, chemical, mineral and anti-ntrient composition. The results showed that Rhizobium inoculation significantly increased (p<0.05) seedling emergence, plant height and stem diameter of both Lablab purpureus cultivars. Rhizobium inoculation had no significant effect (p>0.05) on chlorophyll content for both cultivars. Highworth had significantly higher (p<0.05) plant vigour than Rongai on both inoculated and uninoculated. Varieties and inoculation effects were significant (p<0.05) for number of nodules, nodulation rate, active nodules and nodule dry yield. Rhizobium inoculation significantly (p<0.05) increased fresh matter yield, dry matter yied and dry matter content on both cultivars. There were no significant differences (p>0.05) in NDF, ADIN, ADL, ADF, and Na between inoculated and uninoculated plants for both cultivars. The inoculation of Rhizobium improved CP (15.65%) in Highworth cultivar. The inoculation of Rhizobium significantly increased Ca (1.76-1.84%), Zn (191.91-2 8.33ppm) and Cu (3.50-6.16ppm) compared to un-inoculated plants. Varieties and Rhizobium had no interaction (p>0.05) with condensed tannin, hydrolysable tannin, total polyphenols and saponins . Therefore, the Rhizobium inoculation assisted in improving quality in terms of nutrient composition and decreasing anti-nutrients. It is recommended to use both cultivars of Lablab purpureus. Based on the results of this study it is concluded that Rhizobium inoculation increases yield and forage quality of Lablab purpureus. It is recommended that Highworth cultivar can be used by communal farmers in the Eastern Cape. This cultivar showed that it needs Rhizobium inoculation inorder to produce high quality that can increase livestock production. , Thesis (MSc) -- Faculty of Science and Agriculture, 2017
- Full Text:
- Date Issued: 2017
The emergence of youth protest music and arts as alternative media in Zimbabwe: a Gramscian analysis
- Authors: Kabwato, Chris
- Date: 2017
- Subjects: Protest songs -- Zimbabwe , Protest poetry -- Zimbabwe , Hip-hop -- Political aspects -- Zimbabwe , Radical theater -- Zimbabwe
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/51228 , vital:26072
- Description: The primary goal of the research is to examine the reasons for the emergence of - hip-hop-based youth protest music and satirical video comedy in Zimbabwe in a context where democratic and media practice has been restricted. The study examines the strategies and platforms that the young urban-based, musicians and cultural activists employ as they contest the meta-narrative of political nationalists who control the public mass media. The study recognises culture as a site of struggle and seeks to tease out the meaning of specific art forms (‘conscious’ hip-hop music and faux-news satire) in this very specific period of Zimbabwe’s history. The study proposes that the rise of these new forms of hip-hop based protest music, poetry and satirical comedy indicate how through the production and circulation of popular culture, ordinary Africans are able to debate pertinent issues that are marginalised by the official media channels. The study thus sees these artists as organic intellectuals who use alternative media to engage with different publics as they seek to counter hegemonic discourses.
- Full Text:
- Date Issued: 2017
The emergence of youth protest music and arts as alternative media in Zimbabwe: a Gramscian analysis
- Authors: Kabwato, Chris
- Date: 2017
- Subjects: Protest songs -- Zimbabwe , Protest poetry -- Zimbabwe , Hip-hop -- Political aspects -- Zimbabwe , Radical theater -- Zimbabwe
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/51228 , vital:26072
- Description: The primary goal of the research is to examine the reasons for the emergence of - hip-hop-based youth protest music and satirical video comedy in Zimbabwe in a context where democratic and media practice has been restricted. The study examines the strategies and platforms that the young urban-based, musicians and cultural activists employ as they contest the meta-narrative of political nationalists who control the public mass media. The study recognises culture as a site of struggle and seeks to tease out the meaning of specific art forms (‘conscious’ hip-hop music and faux-news satire) in this very specific period of Zimbabwe’s history. The study proposes that the rise of these new forms of hip-hop based protest music, poetry and satirical comedy indicate how through the production and circulation of popular culture, ordinary Africans are able to debate pertinent issues that are marginalised by the official media channels. The study thus sees these artists as organic intellectuals who use alternative media to engage with different publics as they seek to counter hegemonic discourses.
- Full Text:
- Date Issued: 2017
The epidemiology of African horse sickness in the Eastern Cape, South Africa
- Authors: Riddin, Megan Amy
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/64460 , vital:28546
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
- Authors: Riddin, Megan Amy
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/64460 , vital:28546
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
The Etendeka Igneous Province: magma types and their stratigraphic distribution with implications for the evolution of the Paraná-Etendeka flood basalt province
- Marsh, Julian S, Ewart, A, Milner, Simon C, Duncan, Andrew R, Miller, R McG
- Authors: Marsh, Julian S , Ewart, A , Milner, Simon C , Duncan, Andrew R , Miller, R McG
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149762 , vital:38882 , https://doi.org/10.1007/s004450000115
- Description: Detailed geochemical and field data for the volcanic sequence and intrusions of the Etendeka Igneous Province are used to construct a stratigraphic framework for petrogenetic interpretation of the evolution of the Etendeka-Paraná continental flood volcanic event. Geochemical and petrographic characterization of over 1,000 analyzed samples allows 8 mafic and 17 silicic magma types to be recognized.
- Full Text: false
- Date Issued: 2017
- Authors: Marsh, Julian S , Ewart, A , Milner, Simon C , Duncan, Andrew R , Miller, R McG
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149762 , vital:38882 , https://doi.org/10.1007/s004450000115
- Description: Detailed geochemical and field data for the volcanic sequence and intrusions of the Etendeka Igneous Province are used to construct a stratigraphic framework for petrogenetic interpretation of the evolution of the Etendeka-Paraná continental flood volcanic event. Geochemical and petrographic characterization of over 1,000 analyzed samples allows 8 mafic and 17 silicic magma types to be recognized.
- Full Text: false
- Date Issued: 2017
The evaluation and validation of copper (II) force field parameters of the Auxiliary Activity family 9 enzymes:
- Moses, Vuyani, Tastan Bishop, Özlem, Lobb, Kevin A
- Authors: Moses, Vuyani , Tastan Bishop, Özlem , Lobb, Kevin A
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148206 , vital:38719 , DOI: 10.1016/j.cplett.2017.04.022
- Description: The Auxiliary Activity family 9 (AA9) proteins are Cu2+ coordinating enzymes which are crucial for the early stages of cellulose degradation. In this study, the force field parameters for copper-containing bonds in the Type 1 AA9 protein active site were established and used in a molecular dynamics simulation on a solvated, neutralized system containing an AA9 protein, Cu2+ and a β-cellulose surface. The copper to cellulose interaction was evident during the dynamics, which could also be accelerated by the use of high Cu O van der Waals parameters. The interaction of AA9, Cu2+ and cellulose is described in detail.
- Full Text:
- Date Issued: 2017
- Authors: Moses, Vuyani , Tastan Bishop, Özlem , Lobb, Kevin A
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148206 , vital:38719 , DOI: 10.1016/j.cplett.2017.04.022
- Description: The Auxiliary Activity family 9 (AA9) proteins are Cu2+ coordinating enzymes which are crucial for the early stages of cellulose degradation. In this study, the force field parameters for copper-containing bonds in the Type 1 AA9 protein active site were established and used in a molecular dynamics simulation on a solvated, neutralized system containing an AA9 protein, Cu2+ and a β-cellulose surface. The copper to cellulose interaction was evident during the dynamics, which could also be accelerated by the use of high Cu O van der Waals parameters. The interaction of AA9, Cu2+ and cellulose is described in detail.
- Full Text:
- Date Issued: 2017
The FOXP2 forkhead domain binds to a variety of DNA sequences with different rates and affinities
- Webb, Helen, Steeb, Olga, Blane, Ashleigh, Rotherham, Lia, Aron, Shaun, Machanick, Philip, Dirr, Heini, Fanucchi, Sylvia
- Authors: Webb, Helen , Steeb, Olga , Blane, Ashleigh , Rotherham, Lia , Aron, Shaun , Machanick, Philip , Dirr, Heini , Fanucchi, Sylvia
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439326 , vital:73567 , https://doi.org/10.1093/jb/mvx003
- Description: FOXP2 is a member of the P subfamily of FOX transcription factors, the DNA-binding domain of which is the winged helix forkhead domain (FHD). In this work we show that the FOXP2 FHD is able to bind to various DNA sequences, including a novel sequence identified in this work, with different affinities and rates as detected using surface plasmon resonance. Combining the experimental work with molecular docking, we show that high-affinity sequences remain bound to the protein for longer, form a greater number of interactions with the protein and induce a greater structural change in the protein than low-affinity sequences. We propose a binding model for the FOXP2 FHD that involves three types of binding sequence: low affinity sites which allow for rapid scanning of the genome by the protein in a partially unstructured state; moderate affinity sites which serve to locate the protein near target sites and high-affinity sites which secure the protein to the DNA and induce a conformational change necessary for functional binding and the possible initiation of downstream transcriptional events.
- Full Text:
- Date Issued: 2017
- Authors: Webb, Helen , Steeb, Olga , Blane, Ashleigh , Rotherham, Lia , Aron, Shaun , Machanick, Philip , Dirr, Heini , Fanucchi, Sylvia
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439326 , vital:73567 , https://doi.org/10.1093/jb/mvx003
- Description: FOXP2 is a member of the P subfamily of FOX transcription factors, the DNA-binding domain of which is the winged helix forkhead domain (FHD). In this work we show that the FOXP2 FHD is able to bind to various DNA sequences, including a novel sequence identified in this work, with different affinities and rates as detected using surface plasmon resonance. Combining the experimental work with molecular docking, we show that high-affinity sequences remain bound to the protein for longer, form a greater number of interactions with the protein and induce a greater structural change in the protein than low-affinity sequences. We propose a binding model for the FOXP2 FHD that involves three types of binding sequence: low affinity sites which allow for rapid scanning of the genome by the protein in a partially unstructured state; moderate affinity sites which serve to locate the protein near target sites and high-affinity sites which secure the protein to the DNA and induce a conformational change necessary for functional binding and the possible initiation of downstream transcriptional events.
- Full Text:
- Date Issued: 2017
The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype:
- Cornick, Jennifer E, Tastan Bishop, Özlem, Yalcin, Feyruz, Kiran, Anmol M, Kumwenda, Benjamin, Chaguza, Chrispin, Govindpershad, Shanil, Ousmane, Sani, Senghore, Madikay, du Plessis, Mignon, Pluschke, Gerd, 1952-, Ebruke, Chinelo, McGee, Lesley, Sigaùque , Beutel, Collard, Jean-Marc, Bentley, Stephen D, Kadioglu , Aras, Antonio, Martin, von Gottberg, Anne, French, Neil, Klugman, Keith P, Heyderman, Robert S, Alderson, Mark, Everett, Dean B
- Authors: Cornick, Jennifer E , Tastan Bishop, Özlem , Yalcin, Feyruz , Kiran, Anmol M , Kumwenda, Benjamin , Chaguza, Chrispin , Govindpershad, Shanil , Ousmane, Sani , Senghore, Madikay , du Plessis, Mignon , Pluschke, Gerd, 1952- , Ebruke, Chinelo , McGee, Lesley , Sigaùque , Beutel , Collard, Jean-Marc , Bentley, Stephen D , Kadioglu , Aras , Antonio, Martin , von Gottberg, Anne , French, Neil , Klugman, Keith P , Heyderman, Robert S , Alderson, Mark , Everett, Dean B
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148318 , vital:38729 , DOI: 10.1016/j.vaccine.2016.12.037
- Description: Serotype 1 is one of the most common causes of pneumococcal disease worldwide. Pneumococcal protein vaccines are currently being developed as an alternate intervention strategy to pneumococcal conjugate vaccines. Pre-requisites for an efficacious pneumococcal protein vaccine are universal presence and minimal variation of the target antigen in the pneumococcal population, and the capability to induce a robust human immune response. We used in silico analysis to assess the prevalence of seven protein vaccine candidates (CbpA, PcpA, PhtD, PspA, SP0148, SP1912, SP2108) among 445 serotype 1 pneumococci from 26 different countries, across four continents. CbpA (76%), PspA (68%), PhtD (28%), PcpA (11%) were not universally encoded in the study population, and would not provide full coverage against serotype 1.
- Full Text:
- Date Issued: 2017
- Authors: Cornick, Jennifer E , Tastan Bishop, Özlem , Yalcin, Feyruz , Kiran, Anmol M , Kumwenda, Benjamin , Chaguza, Chrispin , Govindpershad, Shanil , Ousmane, Sani , Senghore, Madikay , du Plessis, Mignon , Pluschke, Gerd, 1952- , Ebruke, Chinelo , McGee, Lesley , Sigaùque , Beutel , Collard, Jean-Marc , Bentley, Stephen D , Kadioglu , Aras , Antonio, Martin , von Gottberg, Anne , French, Neil , Klugman, Keith P , Heyderman, Robert S , Alderson, Mark , Everett, Dean B
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148318 , vital:38729 , DOI: 10.1016/j.vaccine.2016.12.037
- Description: Serotype 1 is one of the most common causes of pneumococcal disease worldwide. Pneumococcal protein vaccines are currently being developed as an alternate intervention strategy to pneumococcal conjugate vaccines. Pre-requisites for an efficacious pneumococcal protein vaccine are universal presence and minimal variation of the target antigen in the pneumococcal population, and the capability to induce a robust human immune response. We used in silico analysis to assess the prevalence of seven protein vaccine candidates (CbpA, PcpA, PhtD, PspA, SP0148, SP1912, SP2108) among 445 serotype 1 pneumococci from 26 different countries, across four continents. CbpA (76%), PspA (68%), PhtD (28%), PcpA (11%) were not universally encoded in the study population, and would not provide full coverage against serotype 1.
- Full Text:
- Date Issued: 2017
The impact of preventive family-strengthening programmes on family cohesion in the Buffalo City Metropolitan Municipality
- Nyanhoto, Rumbidzai https://orcid.org/0000-0002-8505-9890
- Authors: Nyanhoto, Rumbidzai https://orcid.org/0000-0002-8505-9890
- Date: 2017
- Subjects: Family social work http://id.loc.gov/authorities/subjects/sh85047068 , Social service http://id.loc.gov/authorities/subjects/sh85124049 , Social problems http://id.loc.gov/authorities/subjects/sh85123988
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19487 , vital:43132
- Description: This study focused on the impact which specific selected preventive family-strengthening programmes in the Buffalo City Metropolitan Municipality in the Eastern Cape province of South Africa have on improving family cohesion. A mixed methods approach was used to collect and analyse the data. The quantitative approach was the dominant one, while a qualitative approach was used to corroborate the quantitative findings. The quantitative data was collected through a survey. One hundred questionnaires were distributed among the beneficiaries of selected preventive family-strengthening programmes, which were parenting and marriage enrichment programmes. The beneficiaries of the programmes were selected through simple random sampling from the databases of the NGOs which had agreed to participate in the study. The qualitative component of the study produced results which supported the quantitative findings. This data was collected through in-depth interviews which were conducted with fifteen purposively selected social workers who were involved in the implementation of the selected preventive family-strengthening programmes. The findings of the study indicated that although both of the parenting and marriage enrichment programmes do cater for the common problems which affect families, in many cases they do not appear to meet the expectations of their intended beneficiaries. The study found that of the 10 objectives of the parenting programme, only 6 were being met. The programme was found to have achieved its objective of helping parents to understand the behaviour of their children, to be sensitive to their feelings, to develop their self-esteem, to communicate effectively with them, to build the family and to understand their rights with respect to grants. However, the beneficiaries who attended the programme were still unable to encourage self-discipline, to talk to their children about sexuality, to prevent instances of violence in their families or to deal with problems pertaining to child abuse, which represents a failure to meet four of the specific objectives of the programme. The marriage enrichment programme was found to have met its objectives to help couples to assess strength and growth areas, to strengthen their communication skills and to develop personal goals, goals for themselves as couples and goals for their families. The objectives of helping couples to resolve conflicts constructively, to resolve problems pertaining to their families of origin and develop workable budgets or financial plans between spouses were not being met, as the findings indicated that most of the beneficiaries were still struggling to meet these three specific objectives. Their failures in these domains could be attributed to the perceptions which their African culture had instilled in the beneficiaries. The results of the study also indicated that attending the preventive family-strengthening programmes had strengthened the cohesion of families. The discernible evidence of cohesion in the families of most of the beneficiaries who had attended the programmes was expressed through shared affection, a sense of loyalty, reciprocity, solidarity within families and shared decision making. On the basis of the findings, it is recommended that the government should provide adequate means to facilitate the implementation of the programmes, to facilitate partnerships among stakeholders and to ensure the continuous monitoring and evaluation of the programmes. It is also recommended that in order to meet the vii expectations of the beneficiaries of the programmes, needs assessments which engage the communities in the reviewing of the content of the programmes should be performed. In social work practice, the indigenisation of the programmes and the incorporation of the spill over hypothesis will promote their effective implementation. , Thesis (PhD) (Social Work) -- University of Fort Hare, 2017
- Full Text:
- Date Issued: 2017
- Authors: Nyanhoto, Rumbidzai https://orcid.org/0000-0002-8505-9890
- Date: 2017
- Subjects: Family social work http://id.loc.gov/authorities/subjects/sh85047068 , Social service http://id.loc.gov/authorities/subjects/sh85124049 , Social problems http://id.loc.gov/authorities/subjects/sh85123988
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19487 , vital:43132
- Description: This study focused on the impact which specific selected preventive family-strengthening programmes in the Buffalo City Metropolitan Municipality in the Eastern Cape province of South Africa have on improving family cohesion. A mixed methods approach was used to collect and analyse the data. The quantitative approach was the dominant one, while a qualitative approach was used to corroborate the quantitative findings. The quantitative data was collected through a survey. One hundred questionnaires were distributed among the beneficiaries of selected preventive family-strengthening programmes, which were parenting and marriage enrichment programmes. The beneficiaries of the programmes were selected through simple random sampling from the databases of the NGOs which had agreed to participate in the study. The qualitative component of the study produced results which supported the quantitative findings. This data was collected through in-depth interviews which were conducted with fifteen purposively selected social workers who were involved in the implementation of the selected preventive family-strengthening programmes. The findings of the study indicated that although both of the parenting and marriage enrichment programmes do cater for the common problems which affect families, in many cases they do not appear to meet the expectations of their intended beneficiaries. The study found that of the 10 objectives of the parenting programme, only 6 were being met. The programme was found to have achieved its objective of helping parents to understand the behaviour of their children, to be sensitive to their feelings, to develop their self-esteem, to communicate effectively with them, to build the family and to understand their rights with respect to grants. However, the beneficiaries who attended the programme were still unable to encourage self-discipline, to talk to their children about sexuality, to prevent instances of violence in their families or to deal with problems pertaining to child abuse, which represents a failure to meet four of the specific objectives of the programme. The marriage enrichment programme was found to have met its objectives to help couples to assess strength and growth areas, to strengthen their communication skills and to develop personal goals, goals for themselves as couples and goals for their families. The objectives of helping couples to resolve conflicts constructively, to resolve problems pertaining to their families of origin and develop workable budgets or financial plans between spouses were not being met, as the findings indicated that most of the beneficiaries were still struggling to meet these three specific objectives. Their failures in these domains could be attributed to the perceptions which their African culture had instilled in the beneficiaries. The results of the study also indicated that attending the preventive family-strengthening programmes had strengthened the cohesion of families. The discernible evidence of cohesion in the families of most of the beneficiaries who had attended the programmes was expressed through shared affection, a sense of loyalty, reciprocity, solidarity within families and shared decision making. On the basis of the findings, it is recommended that the government should provide adequate means to facilitate the implementation of the programmes, to facilitate partnerships among stakeholders and to ensure the continuous monitoring and evaluation of the programmes. It is also recommended that in order to meet the vii expectations of the beneficiaries of the programmes, needs assessments which engage the communities in the reviewing of the content of the programmes should be performed. In social work practice, the indigenisation of the programmes and the incorporation of the spill over hypothesis will promote their effective implementation. , Thesis (PhD) (Social Work) -- University of Fort Hare, 2017
- Full Text:
- Date Issued: 2017
The influence of dose on the kinetic parameters and dosimetric features of the main thermoluminescence glow peak in α-Al2O3: C, Mg
- Kalita, Jitumani M, Chithambo, Makaiko L
- Authors: Kalita, Jitumani M , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/119834 , vital:34787 , https://doi.org/10.1016/j.nimb.2016.12.027
- Description: The influence of dose (0.1–100 Gy) on the kinetic parameters and the dosimetric features of the main glow peak of α-Al2O3:C,Mg have been investigated. Thermoluminescence (TL) measured at 1 °C/s shows a very high intensity glow peak at 161 °C and six secondary peaks at 42, 72, 193, 279, 330, 370 °C respectively. Analysis shows that the main peak follows first order kinetics irrespective of the irradiation dose. The activation energy is found to be consistent at 1.37 eV and the frequency factor is of the order of 1014 s−1 for any dose between 0.1 and 100 Gy. Further, the analysis for thermal quenching of the main peak of 0.1 Gy irradiated sample shows that the activation energy for thermal quenching is (0.94 ± 0.04) eV.
- Full Text: false
- Date Issued: 2017
- Authors: Kalita, Jitumani M , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/119834 , vital:34787 , https://doi.org/10.1016/j.nimb.2016.12.027
- Description: The influence of dose (0.1–100 Gy) on the kinetic parameters and the dosimetric features of the main glow peak of α-Al2O3:C,Mg have been investigated. Thermoluminescence (TL) measured at 1 °C/s shows a very high intensity glow peak at 161 °C and six secondary peaks at 42, 72, 193, 279, 330, 370 °C respectively. Analysis shows that the main peak follows first order kinetics irrespective of the irradiation dose. The activation energy is found to be consistent at 1.37 eV and the frequency factor is of the order of 1014 s−1 for any dose between 0.1 and 100 Gy. Further, the analysis for thermal quenching of the main peak of 0.1 Gy irradiated sample shows that the activation energy for thermal quenching is (0.94 ± 0.04) eV.
- Full Text: false
- Date Issued: 2017
The influence of radiation-induced defects on thermoluminescence and optically stimulated luminescence of α-Al2O3: C
- Nyirenda, Angel N, Chithambo, Makaiko L
- Authors: Nyirenda, Angel N , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/119818 , vital:34786 , https://doi.org/10.1016/j.nimb.2017.02.077
- Description: It is known that when α-Al2O3:C is exposed to excessive amounts of ionising radiation, defects are induced within its matrix. We report the influence of radiation-induced defects on the thermoluminescence (TL) and optically stimulated luminescence (OSL) measured from α-Al2O3:C after irradiation to 1000 Gy. These radiation-induced defects are thermally unstable in the region 450–650 °C and result in TL peaks in this range when the TL is measured at 1 °C/s. Heating a sample to 700 °C obliterates the radiation-induced defects, that is, the TL peaks corresponding to the radiation induced defects are no longer observed in the subsequent TL measurements when moderate irradiation doses below 10 Gy are used. The charge traps associated with these radiation-induced defects are more stable than the dosimetric trap when the sample is exposed to either sunlight or 470-nm blue light from LEDs. TL glow curves measured following the defect-inducing irradiation produce a dosimetric peak that is broader and positioned at a higher temperature than observed in glow curves obtained before the heavy irradiation. In addition, sample sensitization/desensitization occurs due to the presence of these radiation-induced defects. Furthermore, both the activation energy and the kinetic order of the dosimetric peak evaluated when the radiation-induced defects are present in the sample are significantly lower in value than those obtained when these defects are absent. The radiation-induced defects also affect the shape and total light sum of the OSL signal as well as the position and width of the resultant residual phototransferred thermoluminescence main peak.
- Full Text: false
- Date Issued: 2017
- Authors: Nyirenda, Angel N , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/119818 , vital:34786 , https://doi.org/10.1016/j.nimb.2017.02.077
- Description: It is known that when α-Al2O3:C is exposed to excessive amounts of ionising radiation, defects are induced within its matrix. We report the influence of radiation-induced defects on the thermoluminescence (TL) and optically stimulated luminescence (OSL) measured from α-Al2O3:C after irradiation to 1000 Gy. These radiation-induced defects are thermally unstable in the region 450–650 °C and result in TL peaks in this range when the TL is measured at 1 °C/s. Heating a sample to 700 °C obliterates the radiation-induced defects, that is, the TL peaks corresponding to the radiation induced defects are no longer observed in the subsequent TL measurements when moderate irradiation doses below 10 Gy are used. The charge traps associated with these radiation-induced defects are more stable than the dosimetric trap when the sample is exposed to either sunlight or 470-nm blue light from LEDs. TL glow curves measured following the defect-inducing irradiation produce a dosimetric peak that is broader and positioned at a higher temperature than observed in glow curves obtained before the heavy irradiation. In addition, sample sensitization/desensitization occurs due to the presence of these radiation-induced defects. Furthermore, both the activation energy and the kinetic order of the dosimetric peak evaluated when the radiation-induced defects are present in the sample are significantly lower in value than those obtained when these defects are absent. The radiation-induced defects also affect the shape and total light sum of the OSL signal as well as the position and width of the resultant residual phototransferred thermoluminescence main peak.
- Full Text: false
- Date Issued: 2017
The interaction of selected bacteria with tailored electrospun fibres: towards future applications in bioremediation, bacterial inactivation and electricity generation
- Authors: Mfuku, Aphiwe
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/65123 , vital:28693
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
- Authors: Mfuku, Aphiwe
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/65123 , vital:28693
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
The isolation and genetic characterisation of a novel alphabaculovirus for the microbial control of Cryptophlebia peltastica and closely related tortricid pests
- Authors: Marsberg, Tamryn
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/59292 , vital:27543
- Description: Cryptophlebia peltastica (Meyrick) (Lepidoptera: Tortricidae) is an economically damaging pest of litchis and macadamias in South Africa. Cryptophlebia peltastica causes both pre- and post-harvest damage to litchis, reducing overall yields and thus classifying the pest as a phytosanitary risk. Various control methods have been implemented against C. peltastica in an integrated pest management programme. These control methods include chemical control, cultural control and biological control. However, these methods have not yet provided satisfactory control as of yet. As a result, an alternative control option needs to be identified and implemented into the IPM programme. An alternative method of control that has proved successful in other agricultural sectors and not yet implemented in the control of C. peltastica is that of microbial control, specifically the use of baculovirus biopesticides. This study aimed to isolate and characterise a novel baculovirus from a laboratory culture of C. peltastica that could be used as a commercially available baculovirus biopesticide. In order to isolate a baculovirus a laboratory culture of C. peltastica was successfully established at Rhodes University, Grahamstown, South Africa. This is the first time a laboratory culture of C. peltastica has been established. This allowed for various biological aspects of the pest to be determined, which included: length of the life cycle, fecundity and time to oviposition, egg and larval development and percentage hatch. The results obtained from these studies found that the biology of C. peltastica was similar to that of Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae). Once the laboratory culture had reached high densities, larvae showing symptoms of baculovirus infection were observed. Symptomatic larvae were collected and examined for the presence of a baculovirus. An alphabaculovirus (NPV) was successfully isolated and morphologically identified using purified OBs that were sectioned and observed by transmission electron microscopy. This was then confirmed by amplifying the polyhedrin gene region using degenerate primers. A BLAST analysis found a 93% similarity to a partial polyhedrin gene sequence to be that of Epinotia granitalis (Butler) (Lepidoptera: Tortricidae). The alphabaculovirus was then genetically characterised by generating restriction profiles and sequencing the whole genome. Due to the novelty of the virus, no comparison could be made. The biological activity of the alphabaculovirus was then tested against C. peltastica and two closely related Tortricidae pests: T. leucotreta and Cydiapomonella (Linnaeous) (Lepidoptera: Tortricidae). The alphabaculovirus was highly virulent against all three species. The lethal concentrations (LC50 and LC90) for the virus against C. peltastica was 8.19 x 103 and 3.33 x 105 OBs/ml. The LC50 and LC90 for T. leucotreta was 2.29 x 103 and 9.97 x 104 OBs/ml, respectively and C. pomonella had a LC50 of 1.43 x 103 OBs/ml and LC90 1.26 x 104 OBs/ml. The virus was particularly virulent against T. leucotreta and C. pomonella as compared to C. peltastica. The biological activity of the alphabaculovirus was also tested against CpGV resistant European C. pomonella. From the results it was observed that the virus had the ability to overcome the resistance in C. pomonella and could potentially be used in the resistance management of C. pomonella. With the successful biological activity results obtained from this study, preliminary investigation were made into the mass production of the alphabaculovirus using both the in vivo and in vitro production methods. For in vivo production both the homologous host (C. peltastica) and a heterologous host (T leucotreta) were investigated. Preliminary studies focused on determining the biological activity in fifth instars of both hosts. Fifth instar LC50 and LC90 values for C. peltastica were 3.43 x 103 and 1.11 x 107 OBs/ml and for T. leucotreta the LC50 and LC90 values were 2.53 x 103 and 8.82 x 106 OBs/ml, respectively. The average yield of virus produced in each species was also determined. Cryptophlebia peltastica had the highest viral yield of 5.37 x 1010 OBs/larva and 2.93 x 1010 OBs/larva for T. leucotreta. The results obtained, from the preliminary investigation concluded that the virus could be produced in vivo in both C. peltastica and T. leucotreta, however further research is required into the mass production in both hosts. The in vitro production of the virus was also considered and the susceptibility of the virus was tested against the C. pomonella cell line, Cp14R. After infection of the Cp14R cells with budded virus collected from fifth instar C. peltastica larvae, OBs could be observed after three days. Thus, the alphabaculovirus is susceptible to the Cp14R cell line, thus has the potential to be produced in vitro and further characterised. This study is the first to report of the identification and characterisation of a novel alphabaculovirus isolated from a laboratory reared culture of C. peltastica and the potential for it to be commercially developed into a bipoesticide and used against Tortricidae pests.
- Full Text:
- Date Issued: 2017
- Authors: Marsberg, Tamryn
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/59292 , vital:27543
- Description: Cryptophlebia peltastica (Meyrick) (Lepidoptera: Tortricidae) is an economically damaging pest of litchis and macadamias in South Africa. Cryptophlebia peltastica causes both pre- and post-harvest damage to litchis, reducing overall yields and thus classifying the pest as a phytosanitary risk. Various control methods have been implemented against C. peltastica in an integrated pest management programme. These control methods include chemical control, cultural control and biological control. However, these methods have not yet provided satisfactory control as of yet. As a result, an alternative control option needs to be identified and implemented into the IPM programme. An alternative method of control that has proved successful in other agricultural sectors and not yet implemented in the control of C. peltastica is that of microbial control, specifically the use of baculovirus biopesticides. This study aimed to isolate and characterise a novel baculovirus from a laboratory culture of C. peltastica that could be used as a commercially available baculovirus biopesticide. In order to isolate a baculovirus a laboratory culture of C. peltastica was successfully established at Rhodes University, Grahamstown, South Africa. This is the first time a laboratory culture of C. peltastica has been established. This allowed for various biological aspects of the pest to be determined, which included: length of the life cycle, fecundity and time to oviposition, egg and larval development and percentage hatch. The results obtained from these studies found that the biology of C. peltastica was similar to that of Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae). Once the laboratory culture had reached high densities, larvae showing symptoms of baculovirus infection were observed. Symptomatic larvae were collected and examined for the presence of a baculovirus. An alphabaculovirus (NPV) was successfully isolated and morphologically identified using purified OBs that were sectioned and observed by transmission electron microscopy. This was then confirmed by amplifying the polyhedrin gene region using degenerate primers. A BLAST analysis found a 93% similarity to a partial polyhedrin gene sequence to be that of Epinotia granitalis (Butler) (Lepidoptera: Tortricidae). The alphabaculovirus was then genetically characterised by generating restriction profiles and sequencing the whole genome. Due to the novelty of the virus, no comparison could be made. The biological activity of the alphabaculovirus was then tested against C. peltastica and two closely related Tortricidae pests: T. leucotreta and Cydiapomonella (Linnaeous) (Lepidoptera: Tortricidae). The alphabaculovirus was highly virulent against all three species. The lethal concentrations (LC50 and LC90) for the virus against C. peltastica was 8.19 x 103 and 3.33 x 105 OBs/ml. The LC50 and LC90 for T. leucotreta was 2.29 x 103 and 9.97 x 104 OBs/ml, respectively and C. pomonella had a LC50 of 1.43 x 103 OBs/ml and LC90 1.26 x 104 OBs/ml. The virus was particularly virulent against T. leucotreta and C. pomonella as compared to C. peltastica. The biological activity of the alphabaculovirus was also tested against CpGV resistant European C. pomonella. From the results it was observed that the virus had the ability to overcome the resistance in C. pomonella and could potentially be used in the resistance management of C. pomonella. With the successful biological activity results obtained from this study, preliminary investigation were made into the mass production of the alphabaculovirus using both the in vivo and in vitro production methods. For in vivo production both the homologous host (C. peltastica) and a heterologous host (T leucotreta) were investigated. Preliminary studies focused on determining the biological activity in fifth instars of both hosts. Fifth instar LC50 and LC90 values for C. peltastica were 3.43 x 103 and 1.11 x 107 OBs/ml and for T. leucotreta the LC50 and LC90 values were 2.53 x 103 and 8.82 x 106 OBs/ml, respectively. The average yield of virus produced in each species was also determined. Cryptophlebia peltastica had the highest viral yield of 5.37 x 1010 OBs/larva and 2.93 x 1010 OBs/larva for T. leucotreta. The results obtained, from the preliminary investigation concluded that the virus could be produced in vivo in both C. peltastica and T. leucotreta, however further research is required into the mass production in both hosts. The in vitro production of the virus was also considered and the susceptibility of the virus was tested against the C. pomonella cell line, Cp14R. After infection of the Cp14R cells with budded virus collected from fifth instar C. peltastica larvae, OBs could be observed after three days. Thus, the alphabaculovirus is susceptible to the Cp14R cell line, thus has the potential to be produced in vitro and further characterised. This study is the first to report of the identification and characterisation of a novel alphabaculovirus isolated from a laboratory reared culture of C. peltastica and the potential for it to be commercially developed into a bipoesticide and used against Tortricidae pests.
- Full Text:
- Date Issued: 2017
The Kenyan banking industry: Challenges and sustainability
- Muriithi, Samuel M, Louw, Lynette
- Authors: Muriithi, Samuel M , Louw, Lynette
- Date: 2017
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/69151 , vital:29433 , https://doi.org/10.1007/978-3-319-41090-6_1
- Description: This first chapter of the book aims to provide an overview of the key factors in knowledge and innovation management processes that are influencing and are influenced by the business environment in Africa. The chapter highlights the problematic of achieving a successful and sustainable business in Africa. It therefore outlines the various study programmes of cutting-edge research within different thematic areas such as innovation; entrepreneurship; education; capacity building; human capital; investment; and banking and finance. Finally, the chapter provides an executive summary of all the chapters included in the book.
- Full Text: false
- Date Issued: 2017
- Authors: Muriithi, Samuel M , Louw, Lynette
- Date: 2017
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/69151 , vital:29433 , https://doi.org/10.1007/978-3-319-41090-6_1
- Description: This first chapter of the book aims to provide an overview of the key factors in knowledge and innovation management processes that are influencing and are influenced by the business environment in Africa. The chapter highlights the problematic of achieving a successful and sustainable business in Africa. It therefore outlines the various study programmes of cutting-edge research within different thematic areas such as innovation; entrepreneurship; education; capacity building; human capital; investment; and banking and finance. Finally, the chapter provides an executive summary of all the chapters included in the book.
- Full Text: false
- Date Issued: 2017
The nature of learning and work transitioning in boundaryless work : the case of the environmental engineer
- Ramsarup, Presha, Lotz-Sisitka, Heila
- Authors: Ramsarup, Presha , Lotz-Sisitka, Heila
- Date: 2017
- Subjects: Environmental engineers -- South Africa , Environmental degradation , Workplace literacy
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59657 , vital:27635 , https://doi.org/10.4314/sajee.v.33i1.8
- Description: Transition is a common characteristic of our lives, particularly in a rapidly changing world. In this context, how careers are enacted has become increasingly varied, requiring new conceptual tools to study the transitions of learners and workers. This paper uses theoretical constructs from the literature on boundaryless career discourse as well as learning and on work transitioning in order to explore the learning pathways of environmental engineers. It thus contributes to empirical work that articulates ongoing transitions (beyond the first job) within ‘occupational and organisational life’, as well as to the understanding of learning pathways as educational and occupational progression. The career stories help us to understand how non-linear transitions emerge, the complexity of these transitions, and the need to attend to broader institutional arrangements within and across education and training, the labour market and the workplace. Through its focus on the environmental engineer, it helps us to understand the processes and outcomes of transitions in an important occupation in contemporary professional work in South Africa. Finally, in a field dominated by research on entry into a first job, the paper also provides much-needed insights into occupational transitions into specialised work.
- Full Text:
- Date Issued: 2017
- Authors: Ramsarup, Presha , Lotz-Sisitka, Heila
- Date: 2017
- Subjects: Environmental engineers -- South Africa , Environmental degradation , Workplace literacy
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59657 , vital:27635 , https://doi.org/10.4314/sajee.v.33i1.8
- Description: Transition is a common characteristic of our lives, particularly in a rapidly changing world. In this context, how careers are enacted has become increasingly varied, requiring new conceptual tools to study the transitions of learners and workers. This paper uses theoretical constructs from the literature on boundaryless career discourse as well as learning and on work transitioning in order to explore the learning pathways of environmental engineers. It thus contributes to empirical work that articulates ongoing transitions (beyond the first job) within ‘occupational and organisational life’, as well as to the understanding of learning pathways as educational and occupational progression. The career stories help us to understand how non-linear transitions emerge, the complexity of these transitions, and the need to attend to broader institutional arrangements within and across education and training, the labour market and the workplace. Through its focus on the environmental engineer, it helps us to understand the processes and outcomes of transitions in an important occupation in contemporary professional work in South Africa. Finally, in a field dominated by research on entry into a first job, the paper also provides much-needed insights into occupational transitions into specialised work.
- Full Text:
- Date Issued: 2017
The pest status and integrated management programme of carob moth, Ectomyelois ceratoniae Zeller, attacking citrus in South Africa
- Authors: Thackeray, Sean Robin
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7758 , vital:21293
- Description: The carob moth, Ectomyelois ceratoniae Zeller, is a pest of agricultural commodities and stored products around the world. Carob moth is known to infest citrus in the Mediterranean region and in southern Africa. In grapefruit cultivars, carob moth infestations are associated with high levels of mealybug. However, although this relationship has been observed in other citrus types such as Navel oranges, this has never been quantified. A recent survey of infested fruit from various production areas in South Africa indicated that the pest status of carob moth on Navel oranges may have been underestimated. As a result of the incidental pest status of carob moth on citrus in South Africa in the past, a species specific integrated pest management (IPM) programme does not exist. Therefore, the overriding aim of this theses was to evaluate the pest status of carob moth in citrus and establish a species specific IPM programme by determine the autecology of carob moth in citrus. Reliable methods for monitoring carob moth in citrus orchards both for producers and for research purposes were developed. A user-friendly monitoring method for determining weekly carob moth infestation through dropped fruit was suitable for producers. A timed scouting method was also developed; although the accuracy of this method varied with the experience of the scout. The pest status of carob moth was highest in the Loskop Valley, Nelspruit and the Vaalharts production areas and economic injury to growers ranged from R512.35 to R3 719.80 per hectare as a direct result of infestation. No infestation was recorded in the Sundays River Valley and Citrusdal production areas over both the 2014-15 and 201516 growing seasons. A laboratory study showed the survival of carob moth larvae infesting citrus is less than 10% in the absence of mealybug. However, this increases to almost 40% in the presence of mealybug residues and sooty mould. There was a significant relationship between carob infestation at harvest and mealybug infestation in the middle months of the growing season. The relationship between carob moth and mealybug indicates that current production guidelines for the management of mealybug in citrus may need to be amended. Consequently, it is proposed that an orchard with a history of carob moth infestation and a high mealybug infestation in the previous season should be subjected to an early season preventative application of a registered control product. Also, if mealybug infestation in December is higher than a 5% of fruit per tree, then a corrective application of a registered product is recommended. The application of 2,4-D at petal drop reduced the size of the navel-end opening, decreasing the proportion of mealybug found in the navel-end, subsequently reducing carob moth infestation, resulting in a direct benefit for producers. Products registered for the control of false codling moth (FCM), Thaumatotibia leucotreta Meyrick, were effective in reducing carob moth infestation. In a spray trial conducted over two seasons, Delegate® and Runner® reduced infestation significantly in the 2014-15 season (over 80%), while only Delegate® was effective in the 2015-16 season (over 80%). If a late season corrective chemical application is targeted at both FCM and carob moth, this application should take place between 6-7 weeks prior to harvest. The mating disruption product, SPLAT® EC, reduced carob moth infestation by 70% compared to the untreated control. A laboratory culture was established and head-capsule size categories were determined for all five carob moth instars. A parasitoid survey indicated that parasitism of carob moth larvae is generally less than 5% in citrus orchards and a new species of Braconidae was described as Phanterotoma carobivora van Achterberg and Thackeray. Carob moth fifth instar were found to be the most cold-tolerant larval stage, and were shown to be more cold susceptible than the most cold-tolerant FCM instars at -0.55ºC for eighteen days. This cold treatment resulted in a mortality of 94.6% fifth instar carob moth compared to a combined fourth and fifth instar mortality of 87.8% for FCM after eighteen days. These results indicate that post-harvest cold treatments targeting FCM will be as, if not more, effective against carob moth, suggesting that current phytosanitary legislation for carob moth should be amended to incorporate this study’s findings.
- Full Text:
- Date Issued: 2017
- Authors: Thackeray, Sean Robin
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7758 , vital:21293
- Description: The carob moth, Ectomyelois ceratoniae Zeller, is a pest of agricultural commodities and stored products around the world. Carob moth is known to infest citrus in the Mediterranean region and in southern Africa. In grapefruit cultivars, carob moth infestations are associated with high levels of mealybug. However, although this relationship has been observed in other citrus types such as Navel oranges, this has never been quantified. A recent survey of infested fruit from various production areas in South Africa indicated that the pest status of carob moth on Navel oranges may have been underestimated. As a result of the incidental pest status of carob moth on citrus in South Africa in the past, a species specific integrated pest management (IPM) programme does not exist. Therefore, the overriding aim of this theses was to evaluate the pest status of carob moth in citrus and establish a species specific IPM programme by determine the autecology of carob moth in citrus. Reliable methods for monitoring carob moth in citrus orchards both for producers and for research purposes were developed. A user-friendly monitoring method for determining weekly carob moth infestation through dropped fruit was suitable for producers. A timed scouting method was also developed; although the accuracy of this method varied with the experience of the scout. The pest status of carob moth was highest in the Loskop Valley, Nelspruit and the Vaalharts production areas and economic injury to growers ranged from R512.35 to R3 719.80 per hectare as a direct result of infestation. No infestation was recorded in the Sundays River Valley and Citrusdal production areas over both the 2014-15 and 201516 growing seasons. A laboratory study showed the survival of carob moth larvae infesting citrus is less than 10% in the absence of mealybug. However, this increases to almost 40% in the presence of mealybug residues and sooty mould. There was a significant relationship between carob infestation at harvest and mealybug infestation in the middle months of the growing season. The relationship between carob moth and mealybug indicates that current production guidelines for the management of mealybug in citrus may need to be amended. Consequently, it is proposed that an orchard with a history of carob moth infestation and a high mealybug infestation in the previous season should be subjected to an early season preventative application of a registered control product. Also, if mealybug infestation in December is higher than a 5% of fruit per tree, then a corrective application of a registered product is recommended. The application of 2,4-D at petal drop reduced the size of the navel-end opening, decreasing the proportion of mealybug found in the navel-end, subsequently reducing carob moth infestation, resulting in a direct benefit for producers. Products registered for the control of false codling moth (FCM), Thaumatotibia leucotreta Meyrick, were effective in reducing carob moth infestation. In a spray trial conducted over two seasons, Delegate® and Runner® reduced infestation significantly in the 2014-15 season (over 80%), while only Delegate® was effective in the 2015-16 season (over 80%). If a late season corrective chemical application is targeted at both FCM and carob moth, this application should take place between 6-7 weeks prior to harvest. The mating disruption product, SPLAT® EC, reduced carob moth infestation by 70% compared to the untreated control. A laboratory culture was established and head-capsule size categories were determined for all five carob moth instars. A parasitoid survey indicated that parasitism of carob moth larvae is generally less than 5% in citrus orchards and a new species of Braconidae was described as Phanterotoma carobivora van Achterberg and Thackeray. Carob moth fifth instar were found to be the most cold-tolerant larval stage, and were shown to be more cold susceptible than the most cold-tolerant FCM instars at -0.55ºC for eighteen days. This cold treatment resulted in a mortality of 94.6% fifth instar carob moth compared to a combined fourth and fifth instar mortality of 87.8% for FCM after eighteen days. These results indicate that post-harvest cold treatments targeting FCM will be as, if not more, effective against carob moth, suggesting that current phytosanitary legislation for carob moth should be amended to incorporate this study’s findings.
- Full Text:
- Date Issued: 2017
The photophysical studies of Pluronic F127/P123 micelle mixture system loaded with metal free and Zn 5, 10, 15, 20-tetrakis [4-(benzyloxy) phenyl] porphyrins
- Managa, Muthumuni, Ngoy, Bokolombe P, Nyokong, Tebello
- Authors: Managa, Muthumuni , Ngoy, Bokolombe P , Nyokong, Tebello
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/188932 , vital:44799 , xlink:href="https://doi.org/10.1016/j.jphotochem.2017.02.018"
- Description: Binary mixtures of Pluronics are studied as drug nanocarriers in this work. H2 and Zn 5,10,15,20-tetrakis[4-(benzyloxy) phenyl] porphyrin were encapsulated onto binary micelle mixture of Pluronic F127/P123. The fluorescence and singlet oxygen generating behaviour of the porphyrins were investigated following incorporation. The fluorescence quantum yield for H2TBnOPP (ΦF = 0.034) was higher than that of ZnTBnOPP (ΦF = 0.023) and decreased when ZnTBnOPP or H2TBnOPP when in the presence of Pluronic F127/P123 binary mixtures. The kq values were 2.8 × 108 and 3.7 × 108 M−1 s−1, for H2TBnOPP + Pluronic F127/P123 and ZnTBnOPP + Pluronic F127/P123 in water, respectively. The binding constants (Kb) were 1.58 × 105 M−1 and 1.02 × 105 M−1 for ZnTBnOPP + Pluronic F127/P123 and H2TBnOPP + Pluronic F127/P123, respectively.
- Full Text:
- Date Issued: 2017
- Authors: Managa, Muthumuni , Ngoy, Bokolombe P , Nyokong, Tebello
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/188932 , vital:44799 , xlink:href="https://doi.org/10.1016/j.jphotochem.2017.02.018"
- Description: Binary mixtures of Pluronics are studied as drug nanocarriers in this work. H2 and Zn 5,10,15,20-tetrakis[4-(benzyloxy) phenyl] porphyrin were encapsulated onto binary micelle mixture of Pluronic F127/P123. The fluorescence and singlet oxygen generating behaviour of the porphyrins were investigated following incorporation. The fluorescence quantum yield for H2TBnOPP (ΦF = 0.034) was higher than that of ZnTBnOPP (ΦF = 0.023) and decreased when ZnTBnOPP or H2TBnOPP when in the presence of Pluronic F127/P123 binary mixtures. The kq values were 2.8 × 108 and 3.7 × 108 M−1 s−1, for H2TBnOPP + Pluronic F127/P123 and ZnTBnOPP + Pluronic F127/P123 in water, respectively. The binding constants (Kb) were 1.58 × 105 M−1 and 1.02 × 105 M−1 for ZnTBnOPP + Pluronic F127/P123 and H2TBnOPP + Pluronic F127/P123, respectively.
- Full Text:
- Date Issued: 2017
The potential of hydrellia egeriae rodrigues (diptera: ephydridae) as a biocontrol agent for egeria densa planch. (hydrocharitaceae) in South Africa
- Authors: Smith, Rosali
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/53733 , vital:26314
- Description: The integrity of South Africa’s valuable freshwater ecosystems has been threatened by aquatic invasive plants since the 1900s. Floating aquatic weeds, such as Eichhornia crassipes (C. Mart) Solms (Pondederiaceae), Pistia stratiotes L. (Araceae), Salvinia molesta D.S. Mitchell (Salviniaceae), Azolla filiculoides Lam. (Azollaceae), and the emergent weed, Myriophyllum aquaticum Verdc. (Haloragaceae) benefited from open, nutrient-rich water bodies. Due to the limitations of mechanical and chemical control in aquatic environments, classical biological control has been a huge asset in managing these weeds; consequently bringing them under complete or substantial control. However, submerged aquatic weeds are widely distributed through the aquarium trade in South Africa; facilitating their invasion into new habitats. The removal of surface mats following the successful management of floating weeds has enhanced the growth and competitive ability of submerged aquatic weeds, such as Hydrilla verticillata (L.f.) Royle (Hydrocharitaceae), Myriophyllum spicatum L. (Haloragaceae) and Egeria densa Planch. (Hydrocharitaceae) in South Africa. Of these species, E. densa has become the most widely distributed, invading numerous systems across South Africa. Compared to other exotic submerged aquatic plants, E. densa is the only species capable of inhabiting freshwater systems in every province and therefore, it is vital to manage existing populations and prevent its further distribution and invasion. Hydrellia spp. (Diptera: Ephydridae) biological control agents have been used extensively in the management of submerged aquatic weeds elsewhere, particularly those in the Hydrocharitaceae (Balciunas and Burrows 1996; Wheeler and Center 2001. Hydrellia egeriae Rodrigues (Diptera: Ephydridae) has been identified as a promising candidate for E. densa and was imported into quarantine at Rhodes University, Grahamstown in 2014. The aims of this study were to conduct a pre-release assessment of the potential of H. egeriae as a biological control agent for E. densa in South Africa. The first objective of this study was to establish the life history of the agent under controlled conditions on E. densa found in South Africa, as well as its population growth parameters to predict its invasion success in the field. Secondly, laboratory host-specificity testing was conducted to validate the host range of the agent, in view of published native range host-specificity testing, and to establish potential risks to non-target species, should it be released. Finally, a biological control agent should also effectively reduce the fitness of its host plant, and therefore, impact studies were conducted. Laboratory impact studies have been limited in the past, in that they only investigate agent damage for short ecological periods, thus underestimating the damage capacity of the agent under investigation. Therefore, the damage capacity of H. egeriae was investigated over three consecutive generations in multi-generational impact trials. In a controlled environment of 22 ± 2°C, H. egeriae exhibited the ability to rapidly increase in population size within a short period of time, which will enhance agent establishment and build-up in the field. Host-specificity trials indicated that H. egeriae has a host range restricted to the Hydrocharitaceae, with exploratory feeding and development on Lagarosiphon major Ridley, L. muscoides Harvey and Vallisneria spiralis L. However, only L. major supported agent development during paired larval choice tests, and continuation trials showed that the test species was not physiologically capable of supporting viable agent populations. Risk analysis illustrated that the feeding and reproductive risks that H. egeriae pose to non-target species are very low and therefore, H. egeriae should be safe for release in South Africa. Additionally, significant damage to vital plant structures (shoot growth and side shoot length) was only recorded under high (five larvae) agent abundances. Encouragingly, the number of leaves mined at the end of the experiment was similar for both intermediate (three) and high (five) larval abundances, suggesting that cumulative leaf-mining under intermediate larval abundances has the potential to reduce the fitness of E. densa, given sufficient time. Results from pre-release assessments provide a robust understanding of the specialization of the potential biological control agent to its host plant. Nevertheless, the absolute success of a biological control programme depends on the many factors after prerelease assessments that determine agent establishment, persistence and target weed suppression, e.g. mass-rearing, release protocols and a/biotic factors within the recipient community. Considering these factors, the best mass-rearing and release protocols are proposed here and future research priorities are identified. Finally, the long term success for managing E. densa in South Africa will require a holistic approach to address the underlying factors, such as eutrophication and human-mediated distribution that drive submerged aquatic plant invasions.
- Full Text:
- Date Issued: 2017
- Authors: Smith, Rosali
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/53733 , vital:26314
- Description: The integrity of South Africa’s valuable freshwater ecosystems has been threatened by aquatic invasive plants since the 1900s. Floating aquatic weeds, such as Eichhornia crassipes (C. Mart) Solms (Pondederiaceae), Pistia stratiotes L. (Araceae), Salvinia molesta D.S. Mitchell (Salviniaceae), Azolla filiculoides Lam. (Azollaceae), and the emergent weed, Myriophyllum aquaticum Verdc. (Haloragaceae) benefited from open, nutrient-rich water bodies. Due to the limitations of mechanical and chemical control in aquatic environments, classical biological control has been a huge asset in managing these weeds; consequently bringing them under complete or substantial control. However, submerged aquatic weeds are widely distributed through the aquarium trade in South Africa; facilitating their invasion into new habitats. The removal of surface mats following the successful management of floating weeds has enhanced the growth and competitive ability of submerged aquatic weeds, such as Hydrilla verticillata (L.f.) Royle (Hydrocharitaceae), Myriophyllum spicatum L. (Haloragaceae) and Egeria densa Planch. (Hydrocharitaceae) in South Africa. Of these species, E. densa has become the most widely distributed, invading numerous systems across South Africa. Compared to other exotic submerged aquatic plants, E. densa is the only species capable of inhabiting freshwater systems in every province and therefore, it is vital to manage existing populations and prevent its further distribution and invasion. Hydrellia spp. (Diptera: Ephydridae) biological control agents have been used extensively in the management of submerged aquatic weeds elsewhere, particularly those in the Hydrocharitaceae (Balciunas and Burrows 1996; Wheeler and Center 2001. Hydrellia egeriae Rodrigues (Diptera: Ephydridae) has been identified as a promising candidate for E. densa and was imported into quarantine at Rhodes University, Grahamstown in 2014. The aims of this study were to conduct a pre-release assessment of the potential of H. egeriae as a biological control agent for E. densa in South Africa. The first objective of this study was to establish the life history of the agent under controlled conditions on E. densa found in South Africa, as well as its population growth parameters to predict its invasion success in the field. Secondly, laboratory host-specificity testing was conducted to validate the host range of the agent, in view of published native range host-specificity testing, and to establish potential risks to non-target species, should it be released. Finally, a biological control agent should also effectively reduce the fitness of its host plant, and therefore, impact studies were conducted. Laboratory impact studies have been limited in the past, in that they only investigate agent damage for short ecological periods, thus underestimating the damage capacity of the agent under investigation. Therefore, the damage capacity of H. egeriae was investigated over three consecutive generations in multi-generational impact trials. In a controlled environment of 22 ± 2°C, H. egeriae exhibited the ability to rapidly increase in population size within a short period of time, which will enhance agent establishment and build-up in the field. Host-specificity trials indicated that H. egeriae has a host range restricted to the Hydrocharitaceae, with exploratory feeding and development on Lagarosiphon major Ridley, L. muscoides Harvey and Vallisneria spiralis L. However, only L. major supported agent development during paired larval choice tests, and continuation trials showed that the test species was not physiologically capable of supporting viable agent populations. Risk analysis illustrated that the feeding and reproductive risks that H. egeriae pose to non-target species are very low and therefore, H. egeriae should be safe for release in South Africa. Additionally, significant damage to vital plant structures (shoot growth and side shoot length) was only recorded under high (five larvae) agent abundances. Encouragingly, the number of leaves mined at the end of the experiment was similar for both intermediate (three) and high (five) larval abundances, suggesting that cumulative leaf-mining under intermediate larval abundances has the potential to reduce the fitness of E. densa, given sufficient time. Results from pre-release assessments provide a robust understanding of the specialization of the potential biological control agent to its host plant. Nevertheless, the absolute success of a biological control programme depends on the many factors after prerelease assessments that determine agent establishment, persistence and target weed suppression, e.g. mass-rearing, release protocols and a/biotic factors within the recipient community. Considering these factors, the best mass-rearing and release protocols are proposed here and future research priorities are identified. Finally, the long term success for managing E. densa in South Africa will require a holistic approach to address the underlying factors, such as eutrophication and human-mediated distribution that drive submerged aquatic plant invasions.
- Full Text:
- Date Issued: 2017