Cheetah Acinonyx jubatus behaviour and resource use in response to other African large carnivores
- Authors: Cornhill, Kristina
- Date: 2019
- Subjects: Cheetahs -- Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/44735 , vital:38169
- Description: Competition occurs between species for shared resources. Subordinate species employ resource selection to shift their resource use away from that of dominant species in order to avoid the negative consequences of competition. Only in Africa is the post-Pleistocene large carnivore guild intact, consisting of lions Panthera leo, spotted hyaenas Crocuta crocuta, leopards Panthera pardus, cheetahs Acinonyx jubatus, and African wild dogs Lycaon pictus. Therefore, only in Africa can we explore how large carnivores co-exist with one another in a diverse community. Cheetahs are a subordinate member of the large carnivore guild due to their small stature and solitary nature. However, we still do not fully understand how competition shapes cheetah behaviour and resource use. I used cheetahs as a model subordinate predator to determine the behavioural responses and resource selection of cheetah in response to assumed competition from other large carnivores. I experimentally explored the behavioural response of cheetah to large carnivore scent sources (scats) and their presence at cheetah scent-marking sites to test for avoidance of such cues. Moreover, using unplanned experiments based on the resource use of cheetahs in the absence and then presence of lions (assessing space and time use by cheetah) and African wild dogs (assessing prey use by both species), I evaluated resource selection by cheetahs as a way to reduce competition with these large carnivores. In addition, I measured spatial and temporal partitioning between cheetahs and all four large carnivores at camera trap sites. Finally, I assessed whether cheetahs responded to competitors using a long term proactive response or a short term reactive response. I found that all four of the other large carnivores in the guild shaped cheetahs resource use, however, all did so on different axes in accordance with the niche complementarity hypothesis. Lions and spotted hyenas were avoided through time, African wild dogs through space and prey use, and lions and leopards on the spatiotemporal axis. Moreover, I show that cheetahs utilize a reactive response to competition that allows them to avoid risk while still obtaining necessary resources.
- Full Text:
- Date Issued: 2019
- Authors: Cornhill, Kristina
- Date: 2019
- Subjects: Cheetahs -- Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/44735 , vital:38169
- Description: Competition occurs between species for shared resources. Subordinate species employ resource selection to shift their resource use away from that of dominant species in order to avoid the negative consequences of competition. Only in Africa is the post-Pleistocene large carnivore guild intact, consisting of lions Panthera leo, spotted hyaenas Crocuta crocuta, leopards Panthera pardus, cheetahs Acinonyx jubatus, and African wild dogs Lycaon pictus. Therefore, only in Africa can we explore how large carnivores co-exist with one another in a diverse community. Cheetahs are a subordinate member of the large carnivore guild due to their small stature and solitary nature. However, we still do not fully understand how competition shapes cheetah behaviour and resource use. I used cheetahs as a model subordinate predator to determine the behavioural responses and resource selection of cheetah in response to assumed competition from other large carnivores. I experimentally explored the behavioural response of cheetah to large carnivore scent sources (scats) and their presence at cheetah scent-marking sites to test for avoidance of such cues. Moreover, using unplanned experiments based on the resource use of cheetahs in the absence and then presence of lions (assessing space and time use by cheetah) and African wild dogs (assessing prey use by both species), I evaluated resource selection by cheetahs as a way to reduce competition with these large carnivores. In addition, I measured spatial and temporal partitioning between cheetahs and all four large carnivores at camera trap sites. Finally, I assessed whether cheetahs responded to competitors using a long term proactive response or a short term reactive response. I found that all four of the other large carnivores in the guild shaped cheetahs resource use, however, all did so on different axes in accordance with the niche complementarity hypothesis. Lions and spotted hyenas were avoided through time, African wild dogs through space and prey use, and lions and leopards on the spatiotemporal axis. Moreover, I show that cheetahs utilize a reactive response to competition that allows them to avoid risk while still obtaining necessary resources.
- Full Text:
- Date Issued: 2019
Characterisation of photovoltaic devices using large area light beam induced current measurements
- Okullo, Michael, Van Dyk, Ernes, Okullo, W
- Authors: Okullo, Michael , Van Dyk, Ernes , Okullo, W
- Date: 2017
- Subjects: Photovoltaic cells Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/20526 , vital:29314
- Description: Photovoltaic (PV) modules are made by connecting PV cells in series in order to generate a reasonable voltage that can be used for any productive work. Inaccuracy in cell sorting during crystalline silicon module construction, or non-uniform deposition of PV material and laser scribing during thin _lm module construction, may introduce current mismatch in the module. Current mismatch is a consequence of connecting module cells which have non-identical electrical characteristics. When current mismatch occurs in a module, it is the cell generating the lowest current that determines the module output current and this leads to a decrease in the output power and lifespan of the module. Investigation of current uniformity and the different current reducing features in PV modules, which are potential sources of current mismatch, is therefore critical in optimising the performance of PV modules. In this study, a large area light beam induced current (LA-LBIC) measurement system was developed. This non-destructive technique was used to characterise crystalline silicon PV modules (mono-crystalline and multi-crystalline), thin _lm PV modules (amorphous silicon and copper indium diselenide) and a combined concentrator photovoltaic (CPV) module. A light source mounted onto a motorised x-y scanning stage was used to illuminate a PV module, or the Fresnel lens of a CPV module, point-by-point, while measuring the module output current. The measured current was mapped as a function of position and presented as an LBIC image. The point-illuminated circuit model of a PV module was designed and used to explain the variation in current between and within module cells in the LA-LBIC maps. Application of the model to crystalline silicon modules attributes the variation in photo-generated current between cells mainly to current mismatch between series connected cells. Current variation within cells is attributed to individual cell shunts. In the thin _lm modules, the model attributes the variation in photo-generated current mainly to differences in local cell shunts and series resistances originating from the scribing procedure during cell formation in the manufacturing process. In the PV modules studied, variation in photo-generated current was found to exist both between and within cells. The variation was more pronounced between cells than within cells. Module point I-V curves at different points of the module were measured in order to extract short circuit current, to quantify the variations between and within cells. A striation ring defect, causing a drop in short circuit current of 38%, was detected in the mono-crystalline module. Investigation of the striation ring defect indicated that the defect is active in the bulk (p-type) but inactive in the top (n-type) layer. Further characterisation of the defect revealed that a higher percentage loss in short circuit current occurs at lower light intensities. In the multi-crystalline silicon module, cracks were detected and found to electrically isolate the module cells into two parts, causing them to operate in parallel and consequently introducing current mismatch in the module. The I-V curve of the module at standard test condition (STC) revealed a step below the knee, which is a manifestation of current mismatch in the module. High currents, as a consequence of diffuse reflection, leading to multiple reflections by the top glass were also observed at localised points on the bus bar and cell separations. In the a-Si module, the variation in photo-current within some cells, was found to be substantial. In the copper indium diselenide (CIS) module, an electrical disconnection across the module cells was identified. A disconnection in the form of a triangular shape was also identified in this module, which completely disconnected the front contact of this area from the module. This unique disconnection feature caused current in the module to follow in a reverse direction when the light spot was incident within the boundary of the disconnection. Scans performed under different forward voltage biases were useful in identifying severely shunted module cells. A severely shunted cell was found to generate a higher photo-current than a good cell at the same forward bias voltage. This unique observation was explored further using point-illuminated module I-V measurements, and was found to be due to the crossing over of the I-V curves of the two cells. In order to explore the relationship between cell photo-current and cell shunt resistance, a method to determine the shunt resistances of the cells in an encapsulated module was devised. The method involves measuring the I-V curves of a fully illuminated module and a partially illuminated module when one of its cells is shaded and the I-V curves used to determine the short circuit current and the shunt resistance of the shaded cell. A strong correlation was found to exist between the short circuit current of the shaded cell and the cell shunt resistance, as well as between the short circuit current of the shaded cell and dark LBIC. The LA-LBIC technique was further applied to characterise a combine CPV module. Results showed that the Fresnel lens facets close to the centre generate a higher photo-current at the receiver than those towards the edges. The reduced photo-current towards the edges was attributed to losses due to di_raction, dielectric reflection and internal re_ection. About 65% of the area of the Fresnel lenses were found to be e_ective in light collection in terms of the photo-current generated at the receiver. Abrasions and scratches on the Fresnel lenses were identi_ed as some of the current limiting features in a CPV module. The LA-LBIC technique used in this study has demonstrated the potential to investigate current mismatch, current limiting and current enhancing features in PV modules. The capacity to further characterise current limiting features in order to investigate their effects on photo-current under different wavelengths and light intensities was also demonstrated. Extending the LA-LBIC technique to characterise a combined CPV module is a great achievement of this work.
- Full Text:
- Date Issued: 2017
- Authors: Okullo, Michael , Van Dyk, Ernes , Okullo, W
- Date: 2017
- Subjects: Photovoltaic cells Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/20526 , vital:29314
- Description: Photovoltaic (PV) modules are made by connecting PV cells in series in order to generate a reasonable voltage that can be used for any productive work. Inaccuracy in cell sorting during crystalline silicon module construction, or non-uniform deposition of PV material and laser scribing during thin _lm module construction, may introduce current mismatch in the module. Current mismatch is a consequence of connecting module cells which have non-identical electrical characteristics. When current mismatch occurs in a module, it is the cell generating the lowest current that determines the module output current and this leads to a decrease in the output power and lifespan of the module. Investigation of current uniformity and the different current reducing features in PV modules, which are potential sources of current mismatch, is therefore critical in optimising the performance of PV modules. In this study, a large area light beam induced current (LA-LBIC) measurement system was developed. This non-destructive technique was used to characterise crystalline silicon PV modules (mono-crystalline and multi-crystalline), thin _lm PV modules (amorphous silicon and copper indium diselenide) and a combined concentrator photovoltaic (CPV) module. A light source mounted onto a motorised x-y scanning stage was used to illuminate a PV module, or the Fresnel lens of a CPV module, point-by-point, while measuring the module output current. The measured current was mapped as a function of position and presented as an LBIC image. The point-illuminated circuit model of a PV module was designed and used to explain the variation in current between and within module cells in the LA-LBIC maps. Application of the model to crystalline silicon modules attributes the variation in photo-generated current between cells mainly to current mismatch between series connected cells. Current variation within cells is attributed to individual cell shunts. In the thin _lm modules, the model attributes the variation in photo-generated current mainly to differences in local cell shunts and series resistances originating from the scribing procedure during cell formation in the manufacturing process. In the PV modules studied, variation in photo-generated current was found to exist both between and within cells. The variation was more pronounced between cells than within cells. Module point I-V curves at different points of the module were measured in order to extract short circuit current, to quantify the variations between and within cells. A striation ring defect, causing a drop in short circuit current of 38%, was detected in the mono-crystalline module. Investigation of the striation ring defect indicated that the defect is active in the bulk (p-type) but inactive in the top (n-type) layer. Further characterisation of the defect revealed that a higher percentage loss in short circuit current occurs at lower light intensities. In the multi-crystalline silicon module, cracks were detected and found to electrically isolate the module cells into two parts, causing them to operate in parallel and consequently introducing current mismatch in the module. The I-V curve of the module at standard test condition (STC) revealed a step below the knee, which is a manifestation of current mismatch in the module. High currents, as a consequence of diffuse reflection, leading to multiple reflections by the top glass were also observed at localised points on the bus bar and cell separations. In the a-Si module, the variation in photo-current within some cells, was found to be substantial. In the copper indium diselenide (CIS) module, an electrical disconnection across the module cells was identified. A disconnection in the form of a triangular shape was also identified in this module, which completely disconnected the front contact of this area from the module. This unique disconnection feature caused current in the module to follow in a reverse direction when the light spot was incident within the boundary of the disconnection. Scans performed under different forward voltage biases were useful in identifying severely shunted module cells. A severely shunted cell was found to generate a higher photo-current than a good cell at the same forward bias voltage. This unique observation was explored further using point-illuminated module I-V measurements, and was found to be due to the crossing over of the I-V curves of the two cells. In order to explore the relationship between cell photo-current and cell shunt resistance, a method to determine the shunt resistances of the cells in an encapsulated module was devised. The method involves measuring the I-V curves of a fully illuminated module and a partially illuminated module when one of its cells is shaded and the I-V curves used to determine the short circuit current and the shunt resistance of the shaded cell. A strong correlation was found to exist between the short circuit current of the shaded cell and the cell shunt resistance, as well as between the short circuit current of the shaded cell and dark LBIC. The LA-LBIC technique was further applied to characterise a combine CPV module. Results showed that the Fresnel lens facets close to the centre generate a higher photo-current at the receiver than those towards the edges. The reduced photo-current towards the edges was attributed to losses due to di_raction, dielectric reflection and internal re_ection. About 65% of the area of the Fresnel lenses were found to be e_ective in light collection in terms of the photo-current generated at the receiver. Abrasions and scratches on the Fresnel lenses were identi_ed as some of the current limiting features in a CPV module. The LA-LBIC technique used in this study has demonstrated the potential to investigate current mismatch, current limiting and current enhancing features in PV modules. The capacity to further characterise current limiting features in order to investigate their effects on photo-current under different wavelengths and light intensities was also demonstrated. Extending the LA-LBIC technique to characterise a combined CPV module is a great achievement of this work.
- Full Text:
- Date Issued: 2017
Development of a process for the preparation of linalool from CIS-2-pinanol
- Authors: Buddoo, Subash Ramnarain
- Date: 2009
- Subjects: Odors , Perfumes -- History , Perfumes -- Formulae , Fermentation
- Language: English
- Type: Thesis , Doctoral , DTech
- Identifier: vital:10425 , http://hdl.handle.net/10948/d1016219
- Description: Linalool is a key intermediate for the production of important fragrance chemicals such as geraniol, nerol, geranial, and neral. Linalool can be produced via a two-step process from α-pinene which is a major component of crude sulphated turpentine (CST) a foul-smelling, volatile waste product of the pulp and paper industry. The key step in this process is the pyrolysis step which involves the isomerisation of cis-2-pinanol to linalool and requires high temperatures (600-650°C) and is not very selective due to the decomposition of the product itself under these conditions. A client of the CSIR, Teubes Pty. Ltd., is a manufacturer of flavour and fragrance compounds for the local and international fragrance market and expressed an interest in producing linalool since the company would then gain access to other valuable fragrance chemicals via relatively simple processes. Earlier work conducted by AECI, R & D did not meet with much success since the selectivity to linalool was very poor and the process could hardly be deemed as scalable. The main objective of this project was therefore to develop a process for the selective isomerisation of cis-2-pinanol to linalool with minimum by-product formation and using process equipment that could be scaled to full-scale production. Since cis-2- pinanol could not be purchased in sufficient quantities for process development, a process had to be developed for the bench-scale preparation of kilogram quantities of cis-2-pinanol from α-pinene obtained from the client. Although this synthesis formed a minor part of this investigation, several process improvements and innovations were introduced to produce high quality cis-2-pinanol, in very good yields at kilogram scale. A major part of this investigation was the design and set up of a pyrolyis rig capable of operating at elevated temperatures (400 - 750°C) for the evaluation of various process parameters. Various vaporizer, reactor, and condensation systems were evaluated for their ability to cope with the demanding conditions on a consistent basis. The initial part of the investigation was a screening exercise to evaluate various process parameters as well as solvents, materials of construction, catalysts, etc. A comprehensive statistical design was also conducted to determine the critical process parameters and the model obtained was used to predict the optimum conditions required for the preparation of in-specification product on a consistent basis. These conditions were used in the preparation of a 1kg sample which was required by theclient for market evaluation purposes. The use of a novel microreactor system was also evaluated for the pinanol pyrolysis reaction. To our knowledge, this is the first time that a microreactor has been successfully used for this type of reaction in the Fragrance industry and a patent application is being filed by the CSIR. The kinetics of the reaction in both the tubular reactor system and the microreactor system was investigated. Computer modelling studies on both the systems were also conducted. The raw material cost to produce a kilogram of linalool is $1.40. There is a significant margin of 60.8 percent between the raw material cost of linalool and the current selling price ($3.57/kg). This clearly indicates that the project is potentially feasible from an economic point of view and we can now proceed with confidence to the next stage which is the engineering design, building and commissioning of the large scale pyrolysis rig. The rest of the process steps will be conducted on existing equipment currently present at the CSIR’s large scale facility (Imbiza in Isando, Gauteng).
- Full Text:
- Date Issued: 2009
- Authors: Buddoo, Subash Ramnarain
- Date: 2009
- Subjects: Odors , Perfumes -- History , Perfumes -- Formulae , Fermentation
- Language: English
- Type: Thesis , Doctoral , DTech
- Identifier: vital:10425 , http://hdl.handle.net/10948/d1016219
- Description: Linalool is a key intermediate for the production of important fragrance chemicals such as geraniol, nerol, geranial, and neral. Linalool can be produced via a two-step process from α-pinene which is a major component of crude sulphated turpentine (CST) a foul-smelling, volatile waste product of the pulp and paper industry. The key step in this process is the pyrolysis step which involves the isomerisation of cis-2-pinanol to linalool and requires high temperatures (600-650°C) and is not very selective due to the decomposition of the product itself under these conditions. A client of the CSIR, Teubes Pty. Ltd., is a manufacturer of flavour and fragrance compounds for the local and international fragrance market and expressed an interest in producing linalool since the company would then gain access to other valuable fragrance chemicals via relatively simple processes. Earlier work conducted by AECI, R & D did not meet with much success since the selectivity to linalool was very poor and the process could hardly be deemed as scalable. The main objective of this project was therefore to develop a process for the selective isomerisation of cis-2-pinanol to linalool with minimum by-product formation and using process equipment that could be scaled to full-scale production. Since cis-2- pinanol could not be purchased in sufficient quantities for process development, a process had to be developed for the bench-scale preparation of kilogram quantities of cis-2-pinanol from α-pinene obtained from the client. Although this synthesis formed a minor part of this investigation, several process improvements and innovations were introduced to produce high quality cis-2-pinanol, in very good yields at kilogram scale. A major part of this investigation was the design and set up of a pyrolyis rig capable of operating at elevated temperatures (400 - 750°C) for the evaluation of various process parameters. Various vaporizer, reactor, and condensation systems were evaluated for their ability to cope with the demanding conditions on a consistent basis. The initial part of the investigation was a screening exercise to evaluate various process parameters as well as solvents, materials of construction, catalysts, etc. A comprehensive statistical design was also conducted to determine the critical process parameters and the model obtained was used to predict the optimum conditions required for the preparation of in-specification product on a consistent basis. These conditions were used in the preparation of a 1kg sample which was required by theclient for market evaluation purposes. The use of a novel microreactor system was also evaluated for the pinanol pyrolysis reaction. To our knowledge, this is the first time that a microreactor has been successfully used for this type of reaction in the Fragrance industry and a patent application is being filed by the CSIR. The kinetics of the reaction in both the tubular reactor system and the microreactor system was investigated. Computer modelling studies on both the systems were also conducted. The raw material cost to produce a kilogram of linalool is $1.40. There is a significant margin of 60.8 percent between the raw material cost of linalool and the current selling price ($3.57/kg). This clearly indicates that the project is potentially feasible from an economic point of view and we can now proceed with confidence to the next stage which is the engineering design, building and commissioning of the large scale pyrolysis rig. The rest of the process steps will be conducted on existing equipment currently present at the CSIR’s large scale facility (Imbiza in Isando, Gauteng).
- Full Text:
- Date Issued: 2009
A combination of platinum anticancer drugs and mangiferin causes increased efficacy in cancer cell lines
- Authors: Du Plessis-Stoman, Debbie
- Date: 2010
- Subjects: Cancer -- Chemotherapy , Antineoplastic agents , Platinum compounds -- Therapeutic use , Cancer cells
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10338 , http://hdl.handle.net/10948/d1016160
- Description: This thesis mainly deals with some biochemical aspects regarding the efficacy of novel platinum anticancer compounds alone and in combination with mangiferin, as part of a broader study in which both chemistry and biochemistry are involved. Various novel diamine and N-S donor chelate compounds of platinum II and IV have been developed in which factors such as stereochemistry, ligand exchange rate and biocompatibility were considered as additional parameters. In the first order testing, each of these compounds was tested with reference to their “killing” potential by comparing their rate of killing, over a period of 48 hours with those of cisplatin and oxaliplatin. Numerous novel compounds were tested in this way, using the MTT cell viability assay and the three cancer cell lines MCF7, HT29 and HeLa. Although only a few could be regarded as equal to or even better than cisplatin, CPA7 and oxaliplatin, the testing of these compounds on cancer cells provided useful knowledge for the further development of novel compounds. Three of the better compounds, namely Yol 25, Yol 29.1 and Mar 4.1.4 were selected for further studies, together with oxaliplatin and CPA7 as positive controls, to obtain more detailed knowledge of their anticancer action, both alone and when applied in combination with mangiferin. In addition to the above, resistant cells were produced for each of the three different cell lines tested and all the selected compounds, both in the presence and absence of mangiferin. The effects of these treatments on the activation of NFĸB when applied to normal and resistant cell lines were also investigated. All the compounds induced apoptosis in the cell lines tested as well as alter the DNA cycle at one or more phase. Additionally, combination of these compounds with mangiferin enhanced the above-mentioned effects. Mangiferin decreases the IC50 values of the platinum drugs by up to 3.4 times and, although mangiferin alone did not induce cell cycle arrest, the presence of mangiferin in combination with oxaliplatin and Yol 25 shows an earlier and greatly enhanced delay in the S-phase, while cells treated with CPA7, Yol 29.1 and Mar 4.1.4 in combination with mangiferin showed a later, but greatly enhanced delay in the S-phase. It was also found that mangiferin acts as an NFĸB inhibitor when applied in combination with these drugs, which, in turn, reduces the occurrence of resistance in the cell lines. Resistance to oxaliplatin was counteracted by the combination with mangiferin in HeLa and HT29, but not in MCF7 cells, while resistance to CPA7 was only counteracted in the MCF7 cell line. Yol 25 and Mar 4.1.4 did not seem to induce resistance in HeLa and MCF7 cells, but did in HT29 cells, whereas Yol 29.1 caused resistance in HeLa and HT29 cells, but not in MCF7 cells. Finally, an effort was made to evaluate the different compounds by comparing them with respect to their properties relating to anticancer action with and without the addition of mangiferin.
- Full Text:
- Date Issued: 2010
- Authors: Du Plessis-Stoman, Debbie
- Date: 2010
- Subjects: Cancer -- Chemotherapy , Antineoplastic agents , Platinum compounds -- Therapeutic use , Cancer cells
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10338 , http://hdl.handle.net/10948/d1016160
- Description: This thesis mainly deals with some biochemical aspects regarding the efficacy of novel platinum anticancer compounds alone and in combination with mangiferin, as part of a broader study in which both chemistry and biochemistry are involved. Various novel diamine and N-S donor chelate compounds of platinum II and IV have been developed in which factors such as stereochemistry, ligand exchange rate and biocompatibility were considered as additional parameters. In the first order testing, each of these compounds was tested with reference to their “killing” potential by comparing their rate of killing, over a period of 48 hours with those of cisplatin and oxaliplatin. Numerous novel compounds were tested in this way, using the MTT cell viability assay and the three cancer cell lines MCF7, HT29 and HeLa. Although only a few could be regarded as equal to or even better than cisplatin, CPA7 and oxaliplatin, the testing of these compounds on cancer cells provided useful knowledge for the further development of novel compounds. Three of the better compounds, namely Yol 25, Yol 29.1 and Mar 4.1.4 were selected for further studies, together with oxaliplatin and CPA7 as positive controls, to obtain more detailed knowledge of their anticancer action, both alone and when applied in combination with mangiferin. In addition to the above, resistant cells were produced for each of the three different cell lines tested and all the selected compounds, both in the presence and absence of mangiferin. The effects of these treatments on the activation of NFĸB when applied to normal and resistant cell lines were also investigated. All the compounds induced apoptosis in the cell lines tested as well as alter the DNA cycle at one or more phase. Additionally, combination of these compounds with mangiferin enhanced the above-mentioned effects. Mangiferin decreases the IC50 values of the platinum drugs by up to 3.4 times and, although mangiferin alone did not induce cell cycle arrest, the presence of mangiferin in combination with oxaliplatin and Yol 25 shows an earlier and greatly enhanced delay in the S-phase, while cells treated with CPA7, Yol 29.1 and Mar 4.1.4 in combination with mangiferin showed a later, but greatly enhanced delay in the S-phase. It was also found that mangiferin acts as an NFĸB inhibitor when applied in combination with these drugs, which, in turn, reduces the occurrence of resistance in the cell lines. Resistance to oxaliplatin was counteracted by the combination with mangiferin in HeLa and HT29, but not in MCF7 cells, while resistance to CPA7 was only counteracted in the MCF7 cell line. Yol 25 and Mar 4.1.4 did not seem to induce resistance in HeLa and MCF7 cells, but did in HT29 cells, whereas Yol 29.1 caused resistance in HeLa and HT29 cells, but not in MCF7 cells. Finally, an effort was made to evaluate the different compounds by comparing them with respect to their properties relating to anticancer action with and without the addition of mangiferin.
- Full Text:
- Date Issued: 2010
Synthesis, crystal structures and molecular modelling of rare earth complexes with bis(2-pyridylmethyl)amine and its derivatives : a quantum chemical investigation of ligand conformational space, complex intramolecular rearrangement and stability
- Authors: Matthews, Cameron
- Date: 2020
- Subjects: Rare earths , Complex compounds , Ligands
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/46229 , vital:39517
- Description: Limited research has been performed on the coordination behaviour of hybrid aliphatic and heterocyclic polyamines with trivalent rare earth elements. The rare earth coordination properties of several Nalkylated derivatives of the tridentate ligand bis(2-pyridylmethyl)amine (DPA, HL1) backbone - involving the rare earth elements Y, La-Nd, Sm, Eu and Tb-Lu - have been investigated in this study However, the structural and energetic characteristics of DPA coordination with rare earth elements (REE) have not been studied thus far. Potential applications of DPA-based rare earth complexes are primarily dependent on their electronic and magnetic characteristics, which are affected weakly by the coordination environment, where potential applications may include use as Lanthanide Shift Reagents (LSR), Luminescence probes and small-molecule magnets (SMM). A systematic conformational search of DPA was carried out in this study in order to identify the global minimum conformer and for comparison of the free and coordinated geometries, using the M06(D3) functional belonging to the Density Functional Theory (DFT) family of model chemistries. An understanding of the aforementioned would play an important role in analysis of bulk characterization and the prediction of the reactivity of DPA. Final geometries and electronic energies were obtained from the ‘domain based local pair natural orbital’ (DLPNO)-Møller-Plesset and -coupled cluster theoretical methods, as follows: DLPNO-CCSD(T0)/aug-cc-pVQZ//DLPNO-MP2/aug-cc-pVTZ. Fifteen Single-crystal X-ray diffractometer (SC-XRD) crystal structures of mononuclear rare earth chloride coordination complexes with DPA (RE = La-Nd, Sm, Eu, Tb-Lu and Y) were obtained and geometrically analysed in this study. Three isostructural series of constitutional isomers were identified, consisting of one series of nine-coordinate molecule (M1) and two series of eight-coordinate ion pairs (M2 and M3). This conformational diversity is most likely due the flexible nature of the DPA backbone, as well as the additional stability gained from reduced coordination spheres as a function of decreasing rare earth ionic radii across the lanthanide series (Lanthanide contraction). A Quantum Theory of Atoms-in-Molecules (QTAIM) topological analysis was performed in order to identify and characterise potential hydrogen bonding interactions in H-optimised crystal structures. The crystal structures of five dinuclear (RE = Tb-Tm) and two tetranuclear (RE = Yb and Lu) rare earth chloride complexes with DPA have also been structurally analysed. Furthermore, one mononuclear (RE = Dy), two dinuclear complexes (RE = Dy and Lu) with EtDPA, and one mononuclear complex with the DPA-derivative HL4 (RE = Dy) were structurally characterised. A DFT study of the theoretical interconversion of one real- and two hypothetical- mononuclear lanthanum containing isostructural series (cf. aforementioned crystal structures) was undertaken in order to gain a deeper understanding of the processes involved, in terms of the participating minimum energy paths (MEPs), intermediates and transition states – as determined via the Nudged-Elastic Band (NEB) procedure. This hypothesis is supported by the well-known conformational lability of rare earth complexes, due to the weak/minor covalency of their coordination bonds. An attempt was made to determine the respective energies of one real- and two hypothetical diamagnetic or ‘closed-shell’ constitutional isomers containing the rare earth ions La3+(M1), Y3+(M2) and Lu3+ (M3). It was assumed that the most stable isomers have a greater probability of being observed as the asymmetric unit of the complex crystal structure – assuming weak contributions of lattice or intermolecular interactions towards the geometry of the asymmetric unit.
- Full Text:
- Date Issued: 2020
- Authors: Matthews, Cameron
- Date: 2020
- Subjects: Rare earths , Complex compounds , Ligands
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/46229 , vital:39517
- Description: Limited research has been performed on the coordination behaviour of hybrid aliphatic and heterocyclic polyamines with trivalent rare earth elements. The rare earth coordination properties of several Nalkylated derivatives of the tridentate ligand bis(2-pyridylmethyl)amine (DPA, HL1) backbone - involving the rare earth elements Y, La-Nd, Sm, Eu and Tb-Lu - have been investigated in this study However, the structural and energetic characteristics of DPA coordination with rare earth elements (REE) have not been studied thus far. Potential applications of DPA-based rare earth complexes are primarily dependent on their electronic and magnetic characteristics, which are affected weakly by the coordination environment, where potential applications may include use as Lanthanide Shift Reagents (LSR), Luminescence probes and small-molecule magnets (SMM). A systematic conformational search of DPA was carried out in this study in order to identify the global minimum conformer and for comparison of the free and coordinated geometries, using the M06(D3) functional belonging to the Density Functional Theory (DFT) family of model chemistries. An understanding of the aforementioned would play an important role in analysis of bulk characterization and the prediction of the reactivity of DPA. Final geometries and electronic energies were obtained from the ‘domain based local pair natural orbital’ (DLPNO)-Møller-Plesset and -coupled cluster theoretical methods, as follows: DLPNO-CCSD(T0)/aug-cc-pVQZ//DLPNO-MP2/aug-cc-pVTZ. Fifteen Single-crystal X-ray diffractometer (SC-XRD) crystal structures of mononuclear rare earth chloride coordination complexes with DPA (RE = La-Nd, Sm, Eu, Tb-Lu and Y) were obtained and geometrically analysed in this study. Three isostructural series of constitutional isomers were identified, consisting of one series of nine-coordinate molecule (M1) and two series of eight-coordinate ion pairs (M2 and M3). This conformational diversity is most likely due the flexible nature of the DPA backbone, as well as the additional stability gained from reduced coordination spheres as a function of decreasing rare earth ionic radii across the lanthanide series (Lanthanide contraction). A Quantum Theory of Atoms-in-Molecules (QTAIM) topological analysis was performed in order to identify and characterise potential hydrogen bonding interactions in H-optimised crystal structures. The crystal structures of five dinuclear (RE = Tb-Tm) and two tetranuclear (RE = Yb and Lu) rare earth chloride complexes with DPA have also been structurally analysed. Furthermore, one mononuclear (RE = Dy), two dinuclear complexes (RE = Dy and Lu) with EtDPA, and one mononuclear complex with the DPA-derivative HL4 (RE = Dy) were structurally characterised. A DFT study of the theoretical interconversion of one real- and two hypothetical- mononuclear lanthanum containing isostructural series (cf. aforementioned crystal structures) was undertaken in order to gain a deeper understanding of the processes involved, in terms of the participating minimum energy paths (MEPs), intermediates and transition states – as determined via the Nudged-Elastic Band (NEB) procedure. This hypothesis is supported by the well-known conformational lability of rare earth complexes, due to the weak/minor covalency of their coordination bonds. An attempt was made to determine the respective energies of one real- and two hypothetical diamagnetic or ‘closed-shell’ constitutional isomers containing the rare earth ions La3+(M1), Y3+(M2) and Lu3+ (M3). It was assumed that the most stable isomers have a greater probability of being observed as the asymmetric unit of the complex crystal structure – assuming weak contributions of lattice or intermolecular interactions towards the geometry of the asymmetric unit.
- Full Text:
- Date Issued: 2020
Synthesis, characterization and reactions of novel ferrocenylimidazoles as donor ligands
- Authors: Onyancha, Douglas Okerio
- Date: 2010
- Subjects: Ferrocene
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10390 , http://hdl.handle.net/10948/1150 , Ferrocene
- Description: In this project a series of ferrocenylimidazole derivatives were successfully prepared and characterized using an array of analytical techniques. Reactions of ferrocenylcarbinols with N,N′-thiocarbonyldiimidazole under both solvent-free conditions and in dichloromethane are described. The reaction of ferrocenylmethanol afforded S,S-bis(ferrocenylmethyl)dithiocarbonate, the reaction of α-substituted ferrocenylcarbinols provided ferrocenylalkylimidazolides, while ω-ferrocenylcarbinols yielded ferrocenylimidazolecarbothioates. The reactions were carried out under solvent-free conditions, consistent with the principles of Green Chemistry. Ferrocenyl benzyl ethers were successfully prepared by reacting 4-ferrocenylbenzyl-1Hcarboxylate with a series of primary alcohols under catalytic condition and under a catalyst– free environment. Refluxing a mixture of alcohol-water and 4-ferrocenylbenzyl-1Hcarboxylate provided the corresponding ethers in modest yields. The same ethers were obtained at room temperature by employing potassium tetrachloroplatinate or hydrochloric acid as catalyst. Ferrocenyl-1H-imidazole, 4-ferrocenylphenyl-1H-imidazole and their corresponding ferrocenyl-3-subsitituted imidazolium salts have been successfully synthesized. The compounds were characterized and the electrochemical properties of selected imidazolium salts were examined by cyclic voltammetry. Additionally, X-ray structures of two of the imidazolium salts were determined. The imidazolium salts were found to be good catalysts for the Heck and Suzuki cross-coupling reactions.
- Full Text:
- Date Issued: 2010
- Authors: Onyancha, Douglas Okerio
- Date: 2010
- Subjects: Ferrocene
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10390 , http://hdl.handle.net/10948/1150 , Ferrocene
- Description: In this project a series of ferrocenylimidazole derivatives were successfully prepared and characterized using an array of analytical techniques. Reactions of ferrocenylcarbinols with N,N′-thiocarbonyldiimidazole under both solvent-free conditions and in dichloromethane are described. The reaction of ferrocenylmethanol afforded S,S-bis(ferrocenylmethyl)dithiocarbonate, the reaction of α-substituted ferrocenylcarbinols provided ferrocenylalkylimidazolides, while ω-ferrocenylcarbinols yielded ferrocenylimidazolecarbothioates. The reactions were carried out under solvent-free conditions, consistent with the principles of Green Chemistry. Ferrocenyl benzyl ethers were successfully prepared by reacting 4-ferrocenylbenzyl-1Hcarboxylate with a series of primary alcohols under catalytic condition and under a catalyst– free environment. Refluxing a mixture of alcohol-water and 4-ferrocenylbenzyl-1Hcarboxylate provided the corresponding ethers in modest yields. The same ethers were obtained at room temperature by employing potassium tetrachloroplatinate or hydrochloric acid as catalyst. Ferrocenyl-1H-imidazole, 4-ferrocenylphenyl-1H-imidazole and their corresponding ferrocenyl-3-subsitituted imidazolium salts have been successfully synthesized. The compounds were characterized and the electrochemical properties of selected imidazolium salts were examined by cyclic voltammetry. Additionally, X-ray structures of two of the imidazolium salts were determined. The imidazolium salts were found to be good catalysts for the Heck and Suzuki cross-coupling reactions.
- Full Text:
- Date Issued: 2010
Characterisation and biotic classification of Eastern Cape mixed substrate shores
- Authors: Garner, Cornelia Johanna
- Date: 2013
- Subjects: Coastal sediments -- South Africa -- Eastern Cape , Coastal biodiversity --- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10641 , http://hdl.handle.net/10948/d1020825
- Description: A significant proportion of the South African coastline is composed of both soft (mostly sand) and hard (mostly bedrock) substrata, i.e. “mixed”. This study described and classified macrobenthic assemblages of 20 Eastern Cape mixed substrate shores that differed in shore topography and the extent and position of intertidal rock and sand. A stratified random approach was used. Species richness, composition, abundance and environmental variables were determined. Commonly used beach indices were calculated. A total of 78 macrofaunal and 172 macroalgal species from rock substrate assemblages and 205 macrofauna species from sediment were recorded. Total species richness and richness per substratum exceeded that of sandy beaches devoid of rock and rocky shores with no sand. Rhodophyta were the most diverse and abundant algae, dominating all low-elevation rock surfaces as midlittoral and infralittoral turfs. Chlorophyta diversity was higher than at rocky shores, contributing more to cover-abundance at study sites and in microhabitats with an increased sand load. Sessile macrofauna species richness and abundance was lower than that of rocky shores. Polychaetes and crustaceans were the most diverse and abundant beach infauna. Species richness of both substrates declined from the low shore towards the high shore, but abundance trends varied substantially. The presence and extent of an intertidal biotope/subzone at either substrate depended on substrate availability.The supralittoral fringe in both substrate types was most often affected. Zonal overlap was evident on rock substrate: assemblages of raised midlittoral rock surfaces were enriched by species from lower surfaces sometimes leading to elimination of character taxa. Classification and ordination identified three potential mixed substrate shore biotic types: Biotic type A (Jania-Corallina- Polysiphonia turf) was characterised by robustly-textured algal turfs, a lowered predominance and diversity of polychaetes and an increase in crustacean abundance and diversity in sediment. Biotic type B (Polysiphonia-Tayloriella-Caulacanthus turf) had intermediately and biotic type C (Arthrocardia-Laurencia turf) the most sheltered eulittoral zones and beaches. DCCA identified the major environmental parameters affecting the macrobiota as: the level of wave energy, geological control of waves by hard substrate, sediment grain size and sediment inundation. A strong cross-shore wave attenuation results in sheltered sediments and midshore rock surfaces. Beach macrofauna were highly variable and diverse, which directly opposes previous perceptions about the sediment-bound biota of mixed substrate shores. The hierarchical cluster analysis produced a biotic classification of mixed substrate shores that was indicative of a biotic response to the total effects of leading environmental parameters. Macrobenthos of rock surfaces and sediment therefore showed potential to be used as an alternative or complementary to physical characteristics in classifying mixed substrate shores.
- Full Text:
- Date Issued: 2013
- Authors: Garner, Cornelia Johanna
- Date: 2013
- Subjects: Coastal sediments -- South Africa -- Eastern Cape , Coastal biodiversity --- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10641 , http://hdl.handle.net/10948/d1020825
- Description: A significant proportion of the South African coastline is composed of both soft (mostly sand) and hard (mostly bedrock) substrata, i.e. “mixed”. This study described and classified macrobenthic assemblages of 20 Eastern Cape mixed substrate shores that differed in shore topography and the extent and position of intertidal rock and sand. A stratified random approach was used. Species richness, composition, abundance and environmental variables were determined. Commonly used beach indices were calculated. A total of 78 macrofaunal and 172 macroalgal species from rock substrate assemblages and 205 macrofauna species from sediment were recorded. Total species richness and richness per substratum exceeded that of sandy beaches devoid of rock and rocky shores with no sand. Rhodophyta were the most diverse and abundant algae, dominating all low-elevation rock surfaces as midlittoral and infralittoral turfs. Chlorophyta diversity was higher than at rocky shores, contributing more to cover-abundance at study sites and in microhabitats with an increased sand load. Sessile macrofauna species richness and abundance was lower than that of rocky shores. Polychaetes and crustaceans were the most diverse and abundant beach infauna. Species richness of both substrates declined from the low shore towards the high shore, but abundance trends varied substantially. The presence and extent of an intertidal biotope/subzone at either substrate depended on substrate availability.The supralittoral fringe in both substrate types was most often affected. Zonal overlap was evident on rock substrate: assemblages of raised midlittoral rock surfaces were enriched by species from lower surfaces sometimes leading to elimination of character taxa. Classification and ordination identified three potential mixed substrate shore biotic types: Biotic type A (Jania-Corallina- Polysiphonia turf) was characterised by robustly-textured algal turfs, a lowered predominance and diversity of polychaetes and an increase in crustacean abundance and diversity in sediment. Biotic type B (Polysiphonia-Tayloriella-Caulacanthus turf) had intermediately and biotic type C (Arthrocardia-Laurencia turf) the most sheltered eulittoral zones and beaches. DCCA identified the major environmental parameters affecting the macrobiota as: the level of wave energy, geological control of waves by hard substrate, sediment grain size and sediment inundation. A strong cross-shore wave attenuation results in sheltered sediments and midshore rock surfaces. Beach macrofauna were highly variable and diverse, which directly opposes previous perceptions about the sediment-bound biota of mixed substrate shores. The hierarchical cluster analysis produced a biotic classification of mixed substrate shores that was indicative of a biotic response to the total effects of leading environmental parameters. Macrobenthos of rock surfaces and sediment therefore showed potential to be used as an alternative or complementary to physical characteristics in classifying mixed substrate shores.
- Full Text:
- Date Issued: 2013
The economic and ecological trade-offs of wetland conversion for development projects: the case of the Kampala–Mukono corridor
- Authors: Wasswa, Hannington
- Date: 2018
- Subjects: Wetland ecology -- Uganda -- Kampala , Wetlands -- Uganda -- Kampala Wetland management -- Uganda -- Kampala Hydrogeology
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/36409 , vital:33939
- Description: Wetland diminution for development projects (DPs) in the Kampala–Mukono Corridor (KMC) continues to pose threats to the socio-economic and ecological benefits of wetlands because decision-makers and wetland users at various levels often have insufficient knowledge of these benefits. This situation has resulted in unsustainable development decisions that accord little weight to wetlands and have allocated many of them to DPs. In order to inform decision making for optimal development in the KMC, the present study analysed the spatial and temporal wetland loss to DPs, estimated the economic value of the KMC wetlands, and assessed the environmental consequences of wetland conversion for DPs. Sets of ortho-rectified and cloud-free multi-temporal Landsat MSS (1974) and Landsat TM/ETM+ images (30m) for 1986, 2006, and 2013 were analysed in a spatial and temporal framework. The 79m Landsat image (MSS) of 1974 was resampled and later filtered with subsequent 30m images using a majority filter method. An unsupervised classification approach was employed to characterize the wetlands and associated DPs. The classified DPs and wetland cover types were validated by reference to topographical maps (sheets) of 1974 at a scale of 1:50,000 obtained from Uganda Lands and Surveys, apriori knowledge and Google earth images corresponding to the same spatial and temporal frames. The IDRISI Selva-based Markov Chain model was employed to model future wetland loss to DPs. The Total Economic Valuation Approach (TEV) was employed to quantify selected use values of wetland economic benefits using the market price, replacement cost and contingent valuation techniques. The ecological implications of wetland loss focused on soil organic carbon (SOC) and hydrological impacts in the KMC wetlands. The estimated SOC was assessed with climatic data in order to infer the implication of SOC loss for local climate variability. The manual wet chemistry/oxidation method by Walkley-Black (1934) was adopted to estimate SOC in various wetland cover types. Hydrological impact assessments focused on water quality analysis in various wetland cover types, with major parameters being total nitrogen (TN), total phosphorous (TP) total dissolved solids – (TDS) and total suspended sediments (TSS). Hydrologic flow data parameters across the different wetland cover types in the KMC focused on water level, speed, stream width, and bed load. Results from analysis of the spatial-temporal wetland change revealed that by 2013 the KMC wetlands had lost almost half (47%) of their 1974 areal coverage, with 56% of this loss resulting from conversion to DPs. It is projected that 26% of the KMC wetlands will be lost to more DPs by 2040. Wetland loss is attributed to intensified economic activity and preference of Kampala as an industrial zone, weakness in the previous spatial planning of Kampala, and the general lack of information flow to various institutions involved in the establishment of DPs. The KMC wetlands provide a flow of economic benefits at a minimum approximated value of US$ 3,418 / ha / per year. It is revealed that a great deal of these economic benefits (88%) accrues to the local subsistence level in the form of livelihood products, incomes, and employment benefits. The 56% wetlands loss to DPs in the KMC by 2013 brings the minimum economic value lost to US$ 19,311,700 in the sampled wetlands, and projections of future wetland loss put the minimum economic loss at US$ 48,368,118 by 2040. Continuous degradation of these wetlands means serious economic costs to the government and local communities, as reflected in high replacement expenditures for wetland services, foregone incomes, subsistence livelihood support and alternative employment. The highest carbon (C) sinks were identified in forest swamps, palms, thickets and wetlands converted to agriculture, which accounted for 25% of the KMC wetlands by 2013, while the lowest total soil organic carbon (TSOC) range occurred in converted wetland cover types (converted wetlands to industrial and settlements) that occupied 47% of the study area. A general decrease in SOC sequestration from 1974 to 2013 across the KMC wetlands is identified, with the lowest C pool registered in 2013. The dwindling SOC banks are considered to be partly responsible for varying climate and related feedbacks on wetland benefits in the KMC. The hydrologic impacts of wetland loss are felt mainly in converted wetland cover types, in the form of compromised water quality, with increased nutrient pollution and TSS. These all create negative impacts on wetland hydrological services, particularly filtration, flood attenuation, recharge and discharge benefits, all of which have profound effects on biodiversity. There is an urgent need to reduce the scale of wetland diminution in the KMC. This will be achieved if mitigation and conservation measures are undertaken. Mitigation measures should include a revision of development plans, user sensitization on wetland economic values and enforcement of regulatory mechanisms. Conservation strategies should involve the use of economic incentives and disincentives which include: a revision of historic property rights to regulate wetland use, performance bonds or subsidies for environmentally friendly activities and taxes, fees or fines for unacceptable levels of degradation and tradable permits that utilise the concept of ‘wetland banks’ to ensure no further loss of the KMC wetlands to DPs. Future research should focus on modelling the response of wetland ecosystems to multiple threats and management interventions, and on a feasibility study of wetland restoration options and the implications for local people’s livelihoods in the KMC.
- Full Text:
- Date Issued: 2018
- Authors: Wasswa, Hannington
- Date: 2018
- Subjects: Wetland ecology -- Uganda -- Kampala , Wetlands -- Uganda -- Kampala Wetland management -- Uganda -- Kampala Hydrogeology
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/36409 , vital:33939
- Description: Wetland diminution for development projects (DPs) in the Kampala–Mukono Corridor (KMC) continues to pose threats to the socio-economic and ecological benefits of wetlands because decision-makers and wetland users at various levels often have insufficient knowledge of these benefits. This situation has resulted in unsustainable development decisions that accord little weight to wetlands and have allocated many of them to DPs. In order to inform decision making for optimal development in the KMC, the present study analysed the spatial and temporal wetland loss to DPs, estimated the economic value of the KMC wetlands, and assessed the environmental consequences of wetland conversion for DPs. Sets of ortho-rectified and cloud-free multi-temporal Landsat MSS (1974) and Landsat TM/ETM+ images (30m) for 1986, 2006, and 2013 were analysed in a spatial and temporal framework. The 79m Landsat image (MSS) of 1974 was resampled and later filtered with subsequent 30m images using a majority filter method. An unsupervised classification approach was employed to characterize the wetlands and associated DPs. The classified DPs and wetland cover types were validated by reference to topographical maps (sheets) of 1974 at a scale of 1:50,000 obtained from Uganda Lands and Surveys, apriori knowledge and Google earth images corresponding to the same spatial and temporal frames. The IDRISI Selva-based Markov Chain model was employed to model future wetland loss to DPs. The Total Economic Valuation Approach (TEV) was employed to quantify selected use values of wetland economic benefits using the market price, replacement cost and contingent valuation techniques. The ecological implications of wetland loss focused on soil organic carbon (SOC) and hydrological impacts in the KMC wetlands. The estimated SOC was assessed with climatic data in order to infer the implication of SOC loss for local climate variability. The manual wet chemistry/oxidation method by Walkley-Black (1934) was adopted to estimate SOC in various wetland cover types. Hydrological impact assessments focused on water quality analysis in various wetland cover types, with major parameters being total nitrogen (TN), total phosphorous (TP) total dissolved solids – (TDS) and total suspended sediments (TSS). Hydrologic flow data parameters across the different wetland cover types in the KMC focused on water level, speed, stream width, and bed load. Results from analysis of the spatial-temporal wetland change revealed that by 2013 the KMC wetlands had lost almost half (47%) of their 1974 areal coverage, with 56% of this loss resulting from conversion to DPs. It is projected that 26% of the KMC wetlands will be lost to more DPs by 2040. Wetland loss is attributed to intensified economic activity and preference of Kampala as an industrial zone, weakness in the previous spatial planning of Kampala, and the general lack of information flow to various institutions involved in the establishment of DPs. The KMC wetlands provide a flow of economic benefits at a minimum approximated value of US$ 3,418 / ha / per year. It is revealed that a great deal of these economic benefits (88%) accrues to the local subsistence level in the form of livelihood products, incomes, and employment benefits. The 56% wetlands loss to DPs in the KMC by 2013 brings the minimum economic value lost to US$ 19,311,700 in the sampled wetlands, and projections of future wetland loss put the minimum economic loss at US$ 48,368,118 by 2040. Continuous degradation of these wetlands means serious economic costs to the government and local communities, as reflected in high replacement expenditures for wetland services, foregone incomes, subsistence livelihood support and alternative employment. The highest carbon (C) sinks were identified in forest swamps, palms, thickets and wetlands converted to agriculture, which accounted for 25% of the KMC wetlands by 2013, while the lowest total soil organic carbon (TSOC) range occurred in converted wetland cover types (converted wetlands to industrial and settlements) that occupied 47% of the study area. A general decrease in SOC sequestration from 1974 to 2013 across the KMC wetlands is identified, with the lowest C pool registered in 2013. The dwindling SOC banks are considered to be partly responsible for varying climate and related feedbacks on wetland benefits in the KMC. The hydrologic impacts of wetland loss are felt mainly in converted wetland cover types, in the form of compromised water quality, with increased nutrient pollution and TSS. These all create negative impacts on wetland hydrological services, particularly filtration, flood attenuation, recharge and discharge benefits, all of which have profound effects on biodiversity. There is an urgent need to reduce the scale of wetland diminution in the KMC. This will be achieved if mitigation and conservation measures are undertaken. Mitigation measures should include a revision of development plans, user sensitization on wetland economic values and enforcement of regulatory mechanisms. Conservation strategies should involve the use of economic incentives and disincentives which include: a revision of historic property rights to regulate wetland use, performance bonds or subsidies for environmentally friendly activities and taxes, fees or fines for unacceptable levels of degradation and tradable permits that utilise the concept of ‘wetland banks’ to ensure no further loss of the KMC wetlands to DPs. Future research should focus on modelling the response of wetland ecosystems to multiple threats and management interventions, and on a feasibility study of wetland restoration options and the implications for local people’s livelihoods in the KMC.
- Full Text:
- Date Issued: 2018
Effects of polarization in a distributed raman fibre amplifier
- Authors: Muguro, Kennedy Mwaura
- Date: 2011
- Subjects: Fiber optics , Polarization (Light) , Optical communications , Optical amplifiers , Raman effect
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10544 , http://hdl.handle.net/10948/d1014621
- Description: The need to exploit the large fibre bandwidth and increase the reach has seen the application of the Raman fibre amplifier (RFA) become indispensable in modern light wave systems. The success and resilience of RFAs in optical communication is deeply rooted in their unique optical properties and new technologies which have allowed the amplifier to come of age. However, the full potential of RFAs in optical communication and other applications are yet to be realized. More so are its polarization properties which still remain largely unexploited and have not been fully understood. In this work, fundamental issues regarding distributed RFA have been investigated with the aim of acquiring a better understanding of the amplifier polarization characteristics which have potential applications. In particular the effects of polarization mode dispersion (PMD) and polarization dependent loss (PDL) have been demonstrated both by simulation and experiment. The possibility of Raman polarization pulling in single mode fibres (SMFs) has also been addressed. Polarization sensitivity of RFA has been known for a long time but the clear manifestation of it has become evident in the advent of modern low PMD fibre. Unlike EDFAs which make use of special doped fibre, RFAs require no special fibre for operation. Besides, RFA uses a very long length of fibre and as such the fibre polarization characteristics come into play during amplification. In the demonstrations presented in this thesis a fibre of PMD coefficient < 0.05 pskm-1/2 was regarded as low PMD fibre while one having coefficient ≥ 0.05 pskm-1/2 was categorized to have high PMD unless otherwise stated. Several experiments were performed to evaluate the RFA gain characteristics with respect to fibre PMD and the system performance in the presence of noise emanating from amplified spontaneous emission (ASE). Analysis of Raman gain statistics was done for fibres of low and high PMD coefficients. The statistics of PDG and on-off gain were eventually used to demonstrate the extraction of PMD coefficients of fibres between 0.01- 0.1 pskm-1/2 using a forward pumping configuration. It was found that, at increasing pump power a linear relationship exists between forward and backward signal gain on a dB scale. The interaction of PDL and Raman PDG in the presence of PMD were observed at very fundamental level. It was found the presence of PDL serves to reduce the available on-off gain. It was also established that the presence of PMD mediates the interaction between PDG/PDL. When PMD is high it reduces PDG but the presence of PDL introduces a wavelength dependent gain tilting for WDM channels. Further analysis revealed that signal polarization is influenced by the pump SOP due to the pulling effect which is present even at moderate pump power.
- Full Text:
- Date Issued: 2011
- Authors: Muguro, Kennedy Mwaura
- Date: 2011
- Subjects: Fiber optics , Polarization (Light) , Optical communications , Optical amplifiers , Raman effect
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10544 , http://hdl.handle.net/10948/d1014621
- Description: The need to exploit the large fibre bandwidth and increase the reach has seen the application of the Raman fibre amplifier (RFA) become indispensable in modern light wave systems. The success and resilience of RFAs in optical communication is deeply rooted in their unique optical properties and new technologies which have allowed the amplifier to come of age. However, the full potential of RFAs in optical communication and other applications are yet to be realized. More so are its polarization properties which still remain largely unexploited and have not been fully understood. In this work, fundamental issues regarding distributed RFA have been investigated with the aim of acquiring a better understanding of the amplifier polarization characteristics which have potential applications. In particular the effects of polarization mode dispersion (PMD) and polarization dependent loss (PDL) have been demonstrated both by simulation and experiment. The possibility of Raman polarization pulling in single mode fibres (SMFs) has also been addressed. Polarization sensitivity of RFA has been known for a long time but the clear manifestation of it has become evident in the advent of modern low PMD fibre. Unlike EDFAs which make use of special doped fibre, RFAs require no special fibre for operation. Besides, RFA uses a very long length of fibre and as such the fibre polarization characteristics come into play during amplification. In the demonstrations presented in this thesis a fibre of PMD coefficient < 0.05 pskm-1/2 was regarded as low PMD fibre while one having coefficient ≥ 0.05 pskm-1/2 was categorized to have high PMD unless otherwise stated. Several experiments were performed to evaluate the RFA gain characteristics with respect to fibre PMD and the system performance in the presence of noise emanating from amplified spontaneous emission (ASE). Analysis of Raman gain statistics was done for fibres of low and high PMD coefficients. The statistics of PDG and on-off gain were eventually used to demonstrate the extraction of PMD coefficients of fibres between 0.01- 0.1 pskm-1/2 using a forward pumping configuration. It was found that, at increasing pump power a linear relationship exists between forward and backward signal gain on a dB scale. The interaction of PDL and Raman PDG in the presence of PMD were observed at very fundamental level. It was found the presence of PDL serves to reduce the available on-off gain. It was also established that the presence of PMD mediates the interaction between PDG/PDL. When PMD is high it reduces PDG but the presence of PDL introduces a wavelength dependent gain tilting for WDM channels. Further analysis revealed that signal polarization is influenced by the pump SOP due to the pulling effect which is present even at moderate pump power.
- Full Text:
- Date Issued: 2011
The selective dechlorination of poly-chlorophenols
- Authors: Thomas, Maxwell Paul
- Date: 2009
- Subjects: Sewage -- Purification -- Chlorination , Pesticides -- Toxicology , Chlorine -- Toxicology
- Language: English
- Type: Thesis , Doctoral , DTech
- Identifier: vital:10391 , http://hdl.handle.net/10948/1124 , Sewage -- Purification -- Chlorination , Pesticides -- Toxicology , Chlorine -- Toxicology
- Description: Liquid phase catalytic hydrodechlorinations can provide a convenient and environmentally friendly method for treating organic chlorinated compounds in waste streams generated during the manufacturing of agrochemicals. During such treatment hydrochloric acid is generated as a by-product, which can be easily neutralized employing a base to yield an inorganic salt. This work describes the results obtained during the liquid phase hydrodechlorination of 2,6-dichlorophenol (2,6-DCP) and 2,4,6-trichlorophenol (2,4,6-TCP). The hydrodechlorination of these chlorinated phenolic compounds in a mixture of methanol and water was investigated using supported and unsupported palladium catalysts to yield lower chlorinated phenols or phenol. Various parameters were investigated such as catalyst concentration, ammonium formate concentration, effect of base addition and effect of temperature. During this study two methods of hydrodechlorination were also investigated such as hydride-transfer hydrogenolysis, using ammonium formate, and hydrogenolysis, using dihydrogen. These methods offer a mild treatment in terms of the reaction temperature with temperatures used below 800C. A comparison of the palladium catalyst systems using these methods also showed that Pd/C produced the best results in terms of the hydrodechlorination rate and the selectivity towards phenol. When the ammonium formate method was used, complete hydrodechlorination of both substrates was achieved in 1h of reaction time at a selectivity of 100 percent towards phenol. A comparison of the method using dihydrogen and Pd/C showed that the reaction rate and the selectivity towards phenol during the hydrodechlorination of 2,6-DCP were 87.92 percent and 93.30 percent. Similarly, the reaction rate and selectivity during 2,4,6- TCP hydrodechlorination were 63.77 percent and 70.57 percent. These results were achieved in a reaction time of 3 hours. A high catalyst loading increases the reaction rate at the expense of selectivity, due to the formation of cyclohexanone, formed during further hydrogenation of phenol. The formation of cyclohexanone was limited at high temperatures (ca. 800C) with none detected during the hydrodechlorination of 2,6-DCP and 0.19 percent during the hydrodechlorination of 2,4,6-TCP. Evaluation of the hydrodechlorination parameters showed that the catalytic efficiency of the Pd/C catalysts was inhibited as the reaction proceeded due to the formation of HCl as by-product. A significant increase in the reaction rate was achieved when the reaction was performed in the presence of an inorganic base, which neutralized HCl.
- Full Text:
- Date Issued: 2009
- Authors: Thomas, Maxwell Paul
- Date: 2009
- Subjects: Sewage -- Purification -- Chlorination , Pesticides -- Toxicology , Chlorine -- Toxicology
- Language: English
- Type: Thesis , Doctoral , DTech
- Identifier: vital:10391 , http://hdl.handle.net/10948/1124 , Sewage -- Purification -- Chlorination , Pesticides -- Toxicology , Chlorine -- Toxicology
- Description: Liquid phase catalytic hydrodechlorinations can provide a convenient and environmentally friendly method for treating organic chlorinated compounds in waste streams generated during the manufacturing of agrochemicals. During such treatment hydrochloric acid is generated as a by-product, which can be easily neutralized employing a base to yield an inorganic salt. This work describes the results obtained during the liquid phase hydrodechlorination of 2,6-dichlorophenol (2,6-DCP) and 2,4,6-trichlorophenol (2,4,6-TCP). The hydrodechlorination of these chlorinated phenolic compounds in a mixture of methanol and water was investigated using supported and unsupported palladium catalysts to yield lower chlorinated phenols or phenol. Various parameters were investigated such as catalyst concentration, ammonium formate concentration, effect of base addition and effect of temperature. During this study two methods of hydrodechlorination were also investigated such as hydride-transfer hydrogenolysis, using ammonium formate, and hydrogenolysis, using dihydrogen. These methods offer a mild treatment in terms of the reaction temperature with temperatures used below 800C. A comparison of the palladium catalyst systems using these methods also showed that Pd/C produced the best results in terms of the hydrodechlorination rate and the selectivity towards phenol. When the ammonium formate method was used, complete hydrodechlorination of both substrates was achieved in 1h of reaction time at a selectivity of 100 percent towards phenol. A comparison of the method using dihydrogen and Pd/C showed that the reaction rate and the selectivity towards phenol during the hydrodechlorination of 2,6-DCP were 87.92 percent and 93.30 percent. Similarly, the reaction rate and selectivity during 2,4,6- TCP hydrodechlorination were 63.77 percent and 70.57 percent. These results were achieved in a reaction time of 3 hours. A high catalyst loading increases the reaction rate at the expense of selectivity, due to the formation of cyclohexanone, formed during further hydrogenation of phenol. The formation of cyclohexanone was limited at high temperatures (ca. 800C) with none detected during the hydrodechlorination of 2,6-DCP and 0.19 percent during the hydrodechlorination of 2,4,6-TCP. Evaluation of the hydrodechlorination parameters showed that the catalytic efficiency of the Pd/C catalysts was inhibited as the reaction proceeded due to the formation of HCl as by-product. A significant increase in the reaction rate was achieved when the reaction was performed in the presence of an inorganic base, which neutralized HCl.
- Full Text:
- Date Issued: 2009
β-N-Methylamino-L-Alanine is a developmental neurotoxin
- Authors: Scott, Laura Louise
- Date: 2019
- Subjects: Neurotoxic agents , Nervous system -- Diseases
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/43633 , vital:36949
- Description: β-N-methylamino-L-alanine (BMAA) has been implicated in the development of the neurodegenerative diseases Amyotrophic Lateral Sclerosis/Parkinsonism Dementia Complex (ALS/PDC), Amyotrophic Lateral Sclerosis (ALS) and Alzheimer’s Disease (AD), but to date no animal model has adequately substantiated this link at environmentally relevant or even exaggerated BMAA exposure levels. The resulting controversy over a possible role for BMAA in neurodegenerative diseases was further hampered by a lack of evidence for mechanistic explanation for the disease pathology associated with these diseases However, the different responses to BMAA that have been observed in neonatal compared to adult rats, together with the findings of epidemiological studies that exposure to environmental factors in utero or in the early stages of life may be important for the development of ALS several years later, suggested that age of exposure might be the determining factor of BMAA neurotoxicity. This study therefore specifically addresses the developmental nature of BMAA as a neurotoxin, and investigates the pathology and progressive nature of that pathology after exposure to the toxin at the most susceptible age. This study demonstrated the importance of BMAA exposure age over total BMAA dose by showing that the administration of a single neonatal dose of BMAA to rodents on postnatal day (PND) 3, 4 and 5, and not prenatally or on PND 6, 7 and 10, caused behavioural, locomotor, emotional and long-term cognitive deficits, clinical symptoms of neurodegeneration as well as pathological hallmarks of AD, PD and ALS in the central nervous system. Furthermore, the observed behavioural deficits and distribution of neuronal loss and proteinopathies in the rodent central nervous system following exposure to BMAA on PND 3, 4 and 5 (corresponding to the developing age of an infant during the third trimester of pregnancy) is consistent with that typically associated with the disruption of normal dopamine and/or serotonin signaling in the brain and the consequent alteration in normal hippocampal and striatal neurogenesis that is modulated, in part, by dopamine. The pattern of spread and rate of propagation of pathology in this neonatal rat BMAA model provided further evidence that BMAA potentially exerts its effect by acting on neurotransmitter signaling. The observed late onset of typical ALS symptoms and pathology suggest that in this BMAA model AD and/or PD related symptoms develop first, followed by the start of ALS symptoms only after the AD and/or PD neuropathological deficits have severely progressed. This study also demonstrated that BMAA exposure at different doses and at different developmental ages resulted in the development of different combinations of either AD and/or PD and/or ALS pathology and/or symptoms in rats, and it is therefore feasible that in humans the age and/or frequency of exposure as well as the BMAA dose might similarly be a major determinant of the variant of AD, PD and/or ALS that might develop in adulthood. Based on the low BMAA dose that was able to cause AD and/or PD-like neuropathological abnormalities in rats in this study, it is feasible that a pregnant human could over the course of her pregnancy, and specifically during the third trimester of pregnancy, consume sufficient BMAA to result in her unborn child developing AD and/or PD and/or ALS up to 30-50 years later. This neonatal BMAA model is the only non-transgenic rodent model that reproduces the behavioural deficits, neuropathology and clinical symptoms that are typically associated with AD, PD and ALS in humans and that, more importantly, mimics the delayed onset of disease symptoms and typical slow progression of these neurodegenerative diseases with age. It now seems very likely that BMAA is a developmental neurotoxin that, as a result of perinatal, but probably prenatal exposure, causes or contributes significantly to the development of neurodegenerative diseases in humans.
- Full Text:
- Date Issued: 2019
- Authors: Scott, Laura Louise
- Date: 2019
- Subjects: Neurotoxic agents , Nervous system -- Diseases
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/43633 , vital:36949
- Description: β-N-methylamino-L-alanine (BMAA) has been implicated in the development of the neurodegenerative diseases Amyotrophic Lateral Sclerosis/Parkinsonism Dementia Complex (ALS/PDC), Amyotrophic Lateral Sclerosis (ALS) and Alzheimer’s Disease (AD), but to date no animal model has adequately substantiated this link at environmentally relevant or even exaggerated BMAA exposure levels. The resulting controversy over a possible role for BMAA in neurodegenerative diseases was further hampered by a lack of evidence for mechanistic explanation for the disease pathology associated with these diseases However, the different responses to BMAA that have been observed in neonatal compared to adult rats, together with the findings of epidemiological studies that exposure to environmental factors in utero or in the early stages of life may be important for the development of ALS several years later, suggested that age of exposure might be the determining factor of BMAA neurotoxicity. This study therefore specifically addresses the developmental nature of BMAA as a neurotoxin, and investigates the pathology and progressive nature of that pathology after exposure to the toxin at the most susceptible age. This study demonstrated the importance of BMAA exposure age over total BMAA dose by showing that the administration of a single neonatal dose of BMAA to rodents on postnatal day (PND) 3, 4 and 5, and not prenatally or on PND 6, 7 and 10, caused behavioural, locomotor, emotional and long-term cognitive deficits, clinical symptoms of neurodegeneration as well as pathological hallmarks of AD, PD and ALS in the central nervous system. Furthermore, the observed behavioural deficits and distribution of neuronal loss and proteinopathies in the rodent central nervous system following exposure to BMAA on PND 3, 4 and 5 (corresponding to the developing age of an infant during the third trimester of pregnancy) is consistent with that typically associated with the disruption of normal dopamine and/or serotonin signaling in the brain and the consequent alteration in normal hippocampal and striatal neurogenesis that is modulated, in part, by dopamine. The pattern of spread and rate of propagation of pathology in this neonatal rat BMAA model provided further evidence that BMAA potentially exerts its effect by acting on neurotransmitter signaling. The observed late onset of typical ALS symptoms and pathology suggest that in this BMAA model AD and/or PD related symptoms develop first, followed by the start of ALS symptoms only after the AD and/or PD neuropathological deficits have severely progressed. This study also demonstrated that BMAA exposure at different doses and at different developmental ages resulted in the development of different combinations of either AD and/or PD and/or ALS pathology and/or symptoms in rats, and it is therefore feasible that in humans the age and/or frequency of exposure as well as the BMAA dose might similarly be a major determinant of the variant of AD, PD and/or ALS that might develop in adulthood. Based on the low BMAA dose that was able to cause AD and/or PD-like neuropathological abnormalities in rats in this study, it is feasible that a pregnant human could over the course of her pregnancy, and specifically during the third trimester of pregnancy, consume sufficient BMAA to result in her unborn child developing AD and/or PD and/or ALS up to 30-50 years later. This neonatal BMAA model is the only non-transgenic rodent model that reproduces the behavioural deficits, neuropathology and clinical symptoms that are typically associated with AD, PD and ALS in humans and that, more importantly, mimics the delayed onset of disease symptoms and typical slow progression of these neurodegenerative diseases with age. It now seems very likely that BMAA is a developmental neurotoxin that, as a result of perinatal, but probably prenatal exposure, causes or contributes significantly to the development of neurodegenerative diseases in humans.
- Full Text:
- Date Issued: 2019
Studies on acoustic properties of non-woven fabrics
- Authors: Mvubu, Mlando Basel
- Date: 2017
- Subjects: Needlepunch (Nonwoven fabric) Nonwoven fabrics , Textile fabrics
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/19387 , vital:28866
- Description: This study is divided in to two main parts. The first part deals with the optimization of process parameters of needle-punched non-woven fabrics for achieving maximum sound absorption by employing a Box-Behnken factorial design. The influence of fibre type, depth of needle penetration and stroke frequency on sound absorption properties were studied. These parameters were varied at three levels during experimental trials. From multiple regression analysis, it was observed that the depth of needle penetration alone was the most dominant factor among the selected parameters, which was followed by the interaction between depth of needle penetration and stroke frequency. Fibre type was the least dominant parameter affecting sound absorption. A maximum sound absorption coefficient of 47% (0.47) was obtained from the selected parameters. The results showed that for a process such as needle-punching, which is influenced by multiple variables, it is important to also study the interactive effects of process parameters for achieving optimum sound absorption. The second part of the study deals with the effect of type of natural fibre (fineness), and the blending ratio (with PET fibres) on the air permeability of the needle-punched non-woven fabrics and then it proceeds to study the effect of the air-gap, type of natural fibre (fineness) and blending ratio (with PET fibres) on sound absorption of needle-punched non-woven fabrics. These parameters are tested individually and their two way interaction (synergy) effect using ANOVA. The air-gap was varied from 0mm to 25mm with 5mm increments, three natural fibre types were used and all were blended with polyester fibres at three blending ratios for each natural fibre type. The Univariate Tests of Significance shows that all three parameters have a significant effect on sound absorption together with two two-way interactions, with the exception of the Blend Ratio × Air Gap two-way interaction which was not significant. It was found that the sound absorption improves with the increase in the air-gap size up to 15mm after which sound absorption decreased slightly with the further increase in the air-gap up to 25mm.
- Full Text:
- Date Issued: 2017
- Authors: Mvubu, Mlando Basel
- Date: 2017
- Subjects: Needlepunch (Nonwoven fabric) Nonwoven fabrics , Textile fabrics
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/19387 , vital:28866
- Description: This study is divided in to two main parts. The first part deals with the optimization of process parameters of needle-punched non-woven fabrics for achieving maximum sound absorption by employing a Box-Behnken factorial design. The influence of fibre type, depth of needle penetration and stroke frequency on sound absorption properties were studied. These parameters were varied at three levels during experimental trials. From multiple regression analysis, it was observed that the depth of needle penetration alone was the most dominant factor among the selected parameters, which was followed by the interaction between depth of needle penetration and stroke frequency. Fibre type was the least dominant parameter affecting sound absorption. A maximum sound absorption coefficient of 47% (0.47) was obtained from the selected parameters. The results showed that for a process such as needle-punching, which is influenced by multiple variables, it is important to also study the interactive effects of process parameters for achieving optimum sound absorption. The second part of the study deals with the effect of type of natural fibre (fineness), and the blending ratio (with PET fibres) on the air permeability of the needle-punched non-woven fabrics and then it proceeds to study the effect of the air-gap, type of natural fibre (fineness) and blending ratio (with PET fibres) on sound absorption of needle-punched non-woven fabrics. These parameters are tested individually and their two way interaction (synergy) effect using ANOVA. The air-gap was varied from 0mm to 25mm with 5mm increments, three natural fibre types were used and all were blended with polyester fibres at three blending ratios for each natural fibre type. The Univariate Tests of Significance shows that all three parameters have a significant effect on sound absorption together with two two-way interactions, with the exception of the Blend Ratio × Air Gap two-way interaction which was not significant. It was found that the sound absorption improves with the increase in the air-gap size up to 15mm after which sound absorption decreased slightly with the further increase in the air-gap up to 25mm.
- Full Text:
- Date Issued: 2017
An investigation of statistical methodologies for evaluating natural herbicides for the control of yellow nutsedge (Cyperus esculentus)
- Authors: Asquith, Ilse Bernadette
- Date: 2007
- Subjects: Chemometrics , Weeds
- Language: English
- Type: Thesis , Doctoral , DTech (Chemistry)
- Identifier: vital:10376 , Chemometrics , Weeds
- Description: The present study was undertaken with the view to evaluate methodologies based on traditional Scheffé experimental designs that study mixtures as a tool for discovery research particularly when seeking new and or improved uses of existing mixtures. For the purpose of this study, the topic of controlling the problematic weed known as Yellow Nutsedge (Cyperus esculentus L. var. esculentus) or “Geel Uintjie”, was selected on a rather ad hoc basis. Yellow Nutsedge is a troublesome perennial weed found in most agricultural countries in the world. Herbicidal control is often difficult because of the weeds’ ability to propagate via tubers, which can remain dormant for a number of years and are also resistant to most synthetic herbicide controls. As a first step the study involved the selection of a group of chemical compounds that would be used in suppressing the germination of Yellow Nutsedge tubers. Treatment with various combinations of these chemical compounds as determined by statistical experimental designs was carried out. A review of the literature, particularly literature concerned with the study of the phenomenon of allelopathy, suggested that various phenolic-D-glucopyranosides could show promise in the suppressing the germination of Yellow Nutsedge tubers. This led to the selection of this group of compounds as the target group of “active” substances for the study. Since the group of phenolic-D-glucopyranosides is quite large, and in order to keep the study to a reasonable size, only four phenolic-D-glucopyranosides were selected namely: 4-nitrophenyl-D-glucopyranoside, 4-chlorophenyl--Dglucopyranoside, arbutin and salicin. This selection was based firstly based on a particular phenolic-D-glucopyranoside being a suspected allelochemical, and secondly the ease of technical synthesis using a catalytic process. In addition to the four selected phenolic-D-glucopyranosides, their aglycones (4,nitrophenol, 4,chlorophenol, hydroquinone and salicyl alcohol) were also included as potential “active” substances in order to discern any potential activity between the phenolic-D-glucopyranosides and the aglycones. iii The selected “active substances” were combined in various combinations according to various mixture designs in such a manner that the sum of the proportions of the various actives in any one mixture was always equal to 1. The mixtures of actives were then used in various germination experiments and three experimental responses were measured namely the germination, average dry mass and length of longest shoot. From the results of these germination studies the canonical form of the polynomial equation describing the variation in each of the three germination responses was calculated and evaluated statistically. These equations were then used to estimate the presence of, and the magnitude of synergism between the various active substances. The results from these screening experiments and their detailed statistical analysis indicated that the response surface model for the germination response contains three synergistic blends (4-nitrophenyl--D-glucopyranoside + arbutin; 4-nitrophenyl--Dglucopyranoside + hydroquinone; and 4-chlorophenyl--D-glucopyranoside + salicin) and one antagonistic blend (4-nitrophenyl--D-glucopyranoside + 4- chlorophenol--D-glucopyranoside). The response surface model for the average dry mass response contains two synergistic blends (4-nitrophenyl--Dglucopyranoside + hydroquinone; and 4-chlorophenol--D-glucopyranoside + salicin) and the same antagonistic blend as for germination response. For both germination and average dry mass responses, the most synergistic blend was found to be the combination of 4-chlorophenyl--D-glucopyranoside and salicin. Two additional tests were conducted and both confirmed the results obtained from the screening designs. These tests involved the identification of the two components responsible for the synergistic activity that resulted in the suppression of the germination of the tubers and growth of the seedlings. The experimental response measuring the longest shoot proved to be erroneous and was excluded from the statistical analysis. In summary, this study has clearly shown that statistically designed experiments based on mixture designs can be used as a powerful tool in identifying and quantifying synergistic (or antagonistic) effects of chemicals on the germination ability of plant seeds.
- Full Text:
- Date Issued: 2007
- Authors: Asquith, Ilse Bernadette
- Date: 2007
- Subjects: Chemometrics , Weeds
- Language: English
- Type: Thesis , Doctoral , DTech (Chemistry)
- Identifier: vital:10376 , Chemometrics , Weeds
- Description: The present study was undertaken with the view to evaluate methodologies based on traditional Scheffé experimental designs that study mixtures as a tool for discovery research particularly when seeking new and or improved uses of existing mixtures. For the purpose of this study, the topic of controlling the problematic weed known as Yellow Nutsedge (Cyperus esculentus L. var. esculentus) or “Geel Uintjie”, was selected on a rather ad hoc basis. Yellow Nutsedge is a troublesome perennial weed found in most agricultural countries in the world. Herbicidal control is often difficult because of the weeds’ ability to propagate via tubers, which can remain dormant for a number of years and are also resistant to most synthetic herbicide controls. As a first step the study involved the selection of a group of chemical compounds that would be used in suppressing the germination of Yellow Nutsedge tubers. Treatment with various combinations of these chemical compounds as determined by statistical experimental designs was carried out. A review of the literature, particularly literature concerned with the study of the phenomenon of allelopathy, suggested that various phenolic-D-glucopyranosides could show promise in the suppressing the germination of Yellow Nutsedge tubers. This led to the selection of this group of compounds as the target group of “active” substances for the study. Since the group of phenolic-D-glucopyranosides is quite large, and in order to keep the study to a reasonable size, only four phenolic-D-glucopyranosides were selected namely: 4-nitrophenyl-D-glucopyranoside, 4-chlorophenyl--Dglucopyranoside, arbutin and salicin. This selection was based firstly based on a particular phenolic-D-glucopyranoside being a suspected allelochemical, and secondly the ease of technical synthesis using a catalytic process. In addition to the four selected phenolic-D-glucopyranosides, their aglycones (4,nitrophenol, 4,chlorophenol, hydroquinone and salicyl alcohol) were also included as potential “active” substances in order to discern any potential activity between the phenolic-D-glucopyranosides and the aglycones. iii The selected “active substances” were combined in various combinations according to various mixture designs in such a manner that the sum of the proportions of the various actives in any one mixture was always equal to 1. The mixtures of actives were then used in various germination experiments and three experimental responses were measured namely the germination, average dry mass and length of longest shoot. From the results of these germination studies the canonical form of the polynomial equation describing the variation in each of the three germination responses was calculated and evaluated statistically. These equations were then used to estimate the presence of, and the magnitude of synergism between the various active substances. The results from these screening experiments and their detailed statistical analysis indicated that the response surface model for the germination response contains three synergistic blends (4-nitrophenyl--D-glucopyranoside + arbutin; 4-nitrophenyl--Dglucopyranoside + hydroquinone; and 4-chlorophenyl--D-glucopyranoside + salicin) and one antagonistic blend (4-nitrophenyl--D-glucopyranoside + 4- chlorophenol--D-glucopyranoside). The response surface model for the average dry mass response contains two synergistic blends (4-nitrophenyl--Dglucopyranoside + hydroquinone; and 4-chlorophenol--D-glucopyranoside + salicin) and the same antagonistic blend as for germination response. For both germination and average dry mass responses, the most synergistic blend was found to be the combination of 4-chlorophenyl--D-glucopyranoside and salicin. Two additional tests were conducted and both confirmed the results obtained from the screening designs. These tests involved the identification of the two components responsible for the synergistic activity that resulted in the suppression of the germination of the tubers and growth of the seedlings. The experimental response measuring the longest shoot proved to be erroneous and was excluded from the statistical analysis. In summary, this study has clearly shown that statistically designed experiments based on mixture designs can be used as a powerful tool in identifying and quantifying synergistic (or antagonistic) effects of chemicals on the germination ability of plant seeds.
- Full Text:
- Date Issued: 2007
Towards the bioremediation of the hypertrophic Swartkops Solar Salt-works
- Authors: Difford, Mark
- Date: 2008
- Subjects: Salt industry and trade -- South Africa -- Port Elizabeth , Bioremediation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10606 , http://hdl.handle.net/10948/1506 , Salt industry and trade -- South Africa -- Port Elizabeth , Bioremediation
- Description: This thesis presents the results of three studies aimed at improving brine-quality at the Swartkops solar salt-works (Swartkops Sea Salt [Pty] Ltd) on the outskirts of Port Elizabeth, South Africa. This is a highly eutrophic salt-works, the management of which has become increasingly difficult in recent years. The fundamental problem is how best to operate the system at maximum capacity while limiting nutrient inputs from the nutrient-rich microtidal Swartkops Estuary. In the first study, brine-quality at several sites along the axis of the Swartkops Estuary, and the extent to which it is affected by a variety of factors, is compared. Sites were sampled on micro- and macrotidal time scales, and were selected by the management of the salt-works as possible locations for a new pump-house (for extracting brine from the estuary) for their salt-work operations at Swartkops and Missionvale. The study showed that there are incremental benefits to be had from moving the site of extraction downstream from its present position to a site closer to the mouth of the estuary, where the concentration of nutrients usually is lower and where salinity usually is higher. There is little to be gained from moving the site of extraction laterally, to the mouth of the Inlet from which brine currently is extracted, so that brine is extracted directly from the estuary itself. A set of models relating the concentrations of NH+ 4 , NO{u100000}3 , and PO34{u100000} to salinity is proposed. These take into account the influences of site and season and may be used to estimate the concentration of these nutrients from a measurement of salinity. The model for PO34{u100000} shows that it would be more damaging to the salt-works’ operations to pump “low”-salinity brine during the early months of summer than during autumn. Evidence is also presented to show that Wylde Bridge has no influence on nutrient concentrations in the estuary, with tidal flushing generally passing beyond the Wylde-Bridge break-point. The exceptionally heavy flooding of the estuary that occurred in September 2002 may, however, have biased this conclusion, because of its scouring effect. The second study concentrated on monitoring the effect of (1) decreasing pond depth and (2) increasing pond salinity—two readily available management tools—on brine quality at the salt-works. Pond depth throughout the salt-works was decreased by 40 cm, and the salinity of Pond 5, a pond in the middle of the system, was increased to 175 S. Both measures were kept in place for the duration of the study (Nov. 2002–Aug. 2004). The pond-depth experiment did not have the expected result, there being no evidence of the increase in microalgal growth in the water column that was predicted based on previous research. There was, however, a significant increase in benthic chlorophyll-a, and there was a general improvement in the condition of the sedimentary system of the salt-works. There was also a substantial decrease in particulate organic matter in the water column, with clear evidence that the remaining fraction was closely associated with living forms of particulate matter rather than with detritus. The pond-salinity experiment proves that there is a flourishing, and resilient, population of brine shrimp (Artemia salina L.) at the salt-works. Restocking the salina, or stocking it with a different strain of brine shrimp, is therefore not necessary. The results of this study show that the brine shrimp population at the salt-works needs salinities of greater than about 65–70 S to survive. As a living force they almost certainly need a protective salinity that is greater than about 120–140 S, perhaps even as great as 160 S. Brine shrimp thrived in the high salinity milieu of the experimental pond for the duration of the study, but dwindled from three other ponds of the system once their salinities fell to below 90 S, eventually to disappear from them, apparently completely, once salinity fell to below 65 S. The third and final study concentrated on establishing whether the products released by decomposing barley straw could be used in a solar salt-works to control macroalgal blooms without detrimentally affecting the benthic-mat. Previous research has shown that these products are effective inhibitors of macroalgal growth and that they remain effective under saline conditions. The results presented here show that the same products, or products released under similar conditions of decomposition, adversely effect both the structure and the function of the mat. Consequently, their use in a solar salt-works cannot be recommended.
- Full Text:
- Date Issued: 2008
- Authors: Difford, Mark
- Date: 2008
- Subjects: Salt industry and trade -- South Africa -- Port Elizabeth , Bioremediation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10606 , http://hdl.handle.net/10948/1506 , Salt industry and trade -- South Africa -- Port Elizabeth , Bioremediation
- Description: This thesis presents the results of three studies aimed at improving brine-quality at the Swartkops solar salt-works (Swartkops Sea Salt [Pty] Ltd) on the outskirts of Port Elizabeth, South Africa. This is a highly eutrophic salt-works, the management of which has become increasingly difficult in recent years. The fundamental problem is how best to operate the system at maximum capacity while limiting nutrient inputs from the nutrient-rich microtidal Swartkops Estuary. In the first study, brine-quality at several sites along the axis of the Swartkops Estuary, and the extent to which it is affected by a variety of factors, is compared. Sites were sampled on micro- and macrotidal time scales, and were selected by the management of the salt-works as possible locations for a new pump-house (for extracting brine from the estuary) for their salt-work operations at Swartkops and Missionvale. The study showed that there are incremental benefits to be had from moving the site of extraction downstream from its present position to a site closer to the mouth of the estuary, where the concentration of nutrients usually is lower and where salinity usually is higher. There is little to be gained from moving the site of extraction laterally, to the mouth of the Inlet from which brine currently is extracted, so that brine is extracted directly from the estuary itself. A set of models relating the concentrations of NH+ 4 , NO{u100000}3 , and PO34{u100000} to salinity is proposed. These take into account the influences of site and season and may be used to estimate the concentration of these nutrients from a measurement of salinity. The model for PO34{u100000} shows that it would be more damaging to the salt-works’ operations to pump “low”-salinity brine during the early months of summer than during autumn. Evidence is also presented to show that Wylde Bridge has no influence on nutrient concentrations in the estuary, with tidal flushing generally passing beyond the Wylde-Bridge break-point. The exceptionally heavy flooding of the estuary that occurred in September 2002 may, however, have biased this conclusion, because of its scouring effect. The second study concentrated on monitoring the effect of (1) decreasing pond depth and (2) increasing pond salinity—two readily available management tools—on brine quality at the salt-works. Pond depth throughout the salt-works was decreased by 40 cm, and the salinity of Pond 5, a pond in the middle of the system, was increased to 175 S. Both measures were kept in place for the duration of the study (Nov. 2002–Aug. 2004). The pond-depth experiment did not have the expected result, there being no evidence of the increase in microalgal growth in the water column that was predicted based on previous research. There was, however, a significant increase in benthic chlorophyll-a, and there was a general improvement in the condition of the sedimentary system of the salt-works. There was also a substantial decrease in particulate organic matter in the water column, with clear evidence that the remaining fraction was closely associated with living forms of particulate matter rather than with detritus. The pond-salinity experiment proves that there is a flourishing, and resilient, population of brine shrimp (Artemia salina L.) at the salt-works. Restocking the salina, or stocking it with a different strain of brine shrimp, is therefore not necessary. The results of this study show that the brine shrimp population at the salt-works needs salinities of greater than about 65–70 S to survive. As a living force they almost certainly need a protective salinity that is greater than about 120–140 S, perhaps even as great as 160 S. Brine shrimp thrived in the high salinity milieu of the experimental pond for the duration of the study, but dwindled from three other ponds of the system once their salinities fell to below 90 S, eventually to disappear from them, apparently completely, once salinity fell to below 65 S. The third and final study concentrated on establishing whether the products released by decomposing barley straw could be used in a solar salt-works to control macroalgal blooms without detrimentally affecting the benthic-mat. Previous research has shown that these products are effective inhibitors of macroalgal growth and that they remain effective under saline conditions. The results presented here show that the same products, or products released under similar conditions of decomposition, adversely effect both the structure and the function of the mat. Consequently, their use in a solar salt-works cannot be recommended.
- Full Text:
- Date Issued: 2008
On the electrical characterisation of bulk and epitaxial n-type Te doped GaSb
- Authors: Murape, Davison Munyaradzi
- Date: 2014
- Subjects: Gallium arsenide semiconductors , Electronics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10554 , http://hdl.handle.net/10948/d1020763
- Description: Since the development of the transistor in the Bell Telephone Laboratories in 1948 [78], the semiconductor industry has transformed the world we live in. It is difficult to picture a world without the modern day cutting edge technology. Imagine performing every day functions without “trivial” devices such as computers, cell phones or microwave ovens. The ability to tailor the band gaps of various binary, ternary and quaternary semiconductor systems has opened up a whole new spectrum of potential purpose designed devices [27]. This thesis focuses on the electronic properties of gallium (III) antimonide (V). The antimonides, in general, have the smallest band gap and highest electron mobility of the III-V compound semiconductors and are well suited for long wavelength emission and detection as well as high frequency switching device applications. Furthermore, III-V ternaries and quaternaries, such as (AlGaIn)(AsSb), lattice matched to gallium antimonide (GaSb) are considered serious competitors for HgCdTe and PbSe in long-wavelength infrared (LWIR) and very long-wavelength infrared (VLWIR) technology [4, 10, 11]. Epitaxial material systems based on GaSb are suitable for a wide range of applications such as missile and surveillance systems and a host of other military and civil applications. In addition, an assortment of devices on InAs, GaSb, and AlSb, including resonant tunnelling devices, infrared detectors and mid-infrared semiconductor lasers have been demonstrated [14, 15]. Furthermore, antimonide based devices could potentially reduce optical fibre power loss by a few orders of magnitude, as their implementation can lead to use of non-silica based optical fibres that minimise Raleigh scatter related power loss [8]. GaSb related technology faces a number of challenges. A significant amount of effort is required to exploit the potential it offers. GaSb oxidises readily in the ambient, resulting in the formation of a native oxide layer as well as deposits of elemental antimony (Sb) at the oxide/substrate interface therefore it has poor surface electronic properties resulting from high surface state densities[4, 17, 18]. As grown GaSb is characterised by a high density of surface states of which many are classified as non-radiative (Auger) recombination centres. The elemental Sb layer constitutes an unwanted conduction path parallel to the active surface region [17]. The potential that GaSb and GaSb-based strained layer superlattices offer as successors to the current generation of LWIR and VLWIR optoelectronic materials has therefore been largely impeded [4]. Furthermore, processing steps in device fabrication leads to an unintentionally damaged GaSb surface exacerbating the situation. Any efforts to engineer devices of superior quality on GaSb have to address these and more material specific problems [19]. This study attempts to contribute towards an improved understanding of the structural and electrical properties of the near surface region of Te-doped bulk (100) and MOVPE grown epitaxial Te doped n- GaSb. The main focus of this study is to develop means to de-oxidise and stabilize the highly reactive GaSb surface and to develop diode structures to demonstrate the improved interface characteristics and use related current–voltage (I-V) measurements to quantify the surface state density before and after treatment. These devices were also used to probe the near surface region for electrically active deep level defects that often act as non-radiative recombination centers. Au, Pd and Al were used as metals to establish a metal semiconductor barrier and subsequent depletion region. Sulphur based chemicals, ([(NH4)2S / (NH4)2SO4] + S), not previously reported for the treatment of (100) n-GaSb surfaces, and the commonly used passivants Na2S:9H2O and (NH4)2S were compared by assessing the electrical and structural properties both before and after treatment. The effect of treatment on the electrical response of the material was determined using current-voltage, capacitance-voltage (C-V) and deep level transient spectroscopy (DLTS) measurements, while the surface morphology and composition were studied by SEM, AES and XPS.
- Full Text:
- Date Issued: 2014
- Authors: Murape, Davison Munyaradzi
- Date: 2014
- Subjects: Gallium arsenide semiconductors , Electronics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10554 , http://hdl.handle.net/10948/d1020763
- Description: Since the development of the transistor in the Bell Telephone Laboratories in 1948 [78], the semiconductor industry has transformed the world we live in. It is difficult to picture a world without the modern day cutting edge technology. Imagine performing every day functions without “trivial” devices such as computers, cell phones or microwave ovens. The ability to tailor the band gaps of various binary, ternary and quaternary semiconductor systems has opened up a whole new spectrum of potential purpose designed devices [27]. This thesis focuses on the electronic properties of gallium (III) antimonide (V). The antimonides, in general, have the smallest band gap and highest electron mobility of the III-V compound semiconductors and are well suited for long wavelength emission and detection as well as high frequency switching device applications. Furthermore, III-V ternaries and quaternaries, such as (AlGaIn)(AsSb), lattice matched to gallium antimonide (GaSb) are considered serious competitors for HgCdTe and PbSe in long-wavelength infrared (LWIR) and very long-wavelength infrared (VLWIR) technology [4, 10, 11]. Epitaxial material systems based on GaSb are suitable for a wide range of applications such as missile and surveillance systems and a host of other military and civil applications. In addition, an assortment of devices on InAs, GaSb, and AlSb, including resonant tunnelling devices, infrared detectors and mid-infrared semiconductor lasers have been demonstrated [14, 15]. Furthermore, antimonide based devices could potentially reduce optical fibre power loss by a few orders of magnitude, as their implementation can lead to use of non-silica based optical fibres that minimise Raleigh scatter related power loss [8]. GaSb related technology faces a number of challenges. A significant amount of effort is required to exploit the potential it offers. GaSb oxidises readily in the ambient, resulting in the formation of a native oxide layer as well as deposits of elemental antimony (Sb) at the oxide/substrate interface therefore it has poor surface electronic properties resulting from high surface state densities[4, 17, 18]. As grown GaSb is characterised by a high density of surface states of which many are classified as non-radiative (Auger) recombination centres. The elemental Sb layer constitutes an unwanted conduction path parallel to the active surface region [17]. The potential that GaSb and GaSb-based strained layer superlattices offer as successors to the current generation of LWIR and VLWIR optoelectronic materials has therefore been largely impeded [4]. Furthermore, processing steps in device fabrication leads to an unintentionally damaged GaSb surface exacerbating the situation. Any efforts to engineer devices of superior quality on GaSb have to address these and more material specific problems [19]. This study attempts to contribute towards an improved understanding of the structural and electrical properties of the near surface region of Te-doped bulk (100) and MOVPE grown epitaxial Te doped n- GaSb. The main focus of this study is to develop means to de-oxidise and stabilize the highly reactive GaSb surface and to develop diode structures to demonstrate the improved interface characteristics and use related current–voltage (I-V) measurements to quantify the surface state density before and after treatment. These devices were also used to probe the near surface region for electrically active deep level defects that often act as non-radiative recombination centers. Au, Pd and Al were used as metals to establish a metal semiconductor barrier and subsequent depletion region. Sulphur based chemicals, ([(NH4)2S / (NH4)2SO4] + S), not previously reported for the treatment of (100) n-GaSb surfaces, and the commonly used passivants Na2S:9H2O and (NH4)2S were compared by assessing the electrical and structural properties both before and after treatment. The effect of treatment on the electrical response of the material was determined using current-voltage, capacitance-voltage (C-V) and deep level transient spectroscopy (DLTS) measurements, while the surface morphology and composition were studied by SEM, AES and XPS.
- Full Text:
- Date Issued: 2014
The identification of criteria to be utilised in mathematical diagnostic tests
- Authors: Wagner-Welsh, Shirley Joy
- Date: 2008
- Subjects: Educational tests and measurements -- South Africa -- Port Elizabeth , Mathematical ability -- Testing , Ability -- Testing , Guidance test battery for secondary pupils , Mathematics -- Study and teaching -- South Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: vital:10501 , http://hdl.handle.net/10948/708 , Educational tests and measurements -- South Africa -- Port Elizabeth , Mathematical ability -- Testing , Ability -- Testing , Guidance test battery for secondary pupils , Mathematics -- Study and teaching -- South Africa
- Description: School-related mistakes and low pass rates have led this researcher to perceive that some students are not adequately prepared for Mathematics 1. To address the problem of under-preparedness overseas universities use placement or diagnostic tests. Diagnostic testing identifies areas of weakness and provides information to guide the development of appropriate remedial support. This researcher embarked on a study to identify the sub-domains (criteria) that should be included in a diagnostic Mathematics test battery at the NMMU. An analysis of first-year curricula was undertaken to determine the required Mathematical pre-knowledge and skills entry-level students should have. Thereafter, the required pre-knowledge and skills were reflected against the standard grade school syllabi. From this it was determined that the school learners should acquire the necessary pre-knowledge and skills for university success as part of the school syllabus. However, in reality this is not the case as the researcher and other Mathematics lecturers identified a number of basic errors that incoming students make. This suggests that they have not developed all the required knowledge and skills. Furthermore, their performance in the matriculation examinations does not provide an adequate measure of the requisite Mathematical pre-knowledge and skills necessary for success at university-level Mathematics. No suitable existing diagnostic Mathematics test could be found. By utilizing both an action research as well as a test development methodology, the researcher thus proceeded to delineate the sub-domains that should be included in a diagnostic Mathematics test battery. Thereafter, test specifications were developed for two pilot tests and items were developed or sourced. The constructed response item-type was chosen for the pilot tests as it was argued that this item-type was more useful to use in a diagnostic test than a multiple-choice item format, for example. The pilot test battery, which consisted of a pilot Arithmetic and Algebra and Calculus tests, was administered to a sample of first-year students at the NMMU in 2004 and their performance in Mathematics at the end of the first year was tracked. Tests were scored holistically and analytically to provide a rich source of information. Thereafter, the test results were analysed to obtain evidence on the content validity of the pilot tests, including the item difficulty values and the item-total correlations; to determine the predictive validity of performance on the pilot tests with respect to final first-year Mathematics marks; and their reliability was determined using the Cronbach’s Alpha statistic. These findings suggest that appropriate sub-domains (criteria) were delineated and the items appropriately covered these sub-domains (i.e. the content validity of the pilot tests is acceptable). Furthermore, the predictive validity of the pilot ix tests was found to be acceptable in that significant correlations were found between the pilot tests and performance in first-year Mathematics. Finally, the pilot tests were found to be reliable. Based on the results, suggestions are made regarding how to refine the diagnostic test battery and the research related to it. The final diagnostic Mathematics test battery holds much potential to be able to assist in the early identification of at-risk students who can be timeously placed in developmentally appropriate Mathematics modules or provided with appropriate remedial intervention.
- Full Text:
- Date Issued: 2008
- Authors: Wagner-Welsh, Shirley Joy
- Date: 2008
- Subjects: Educational tests and measurements -- South Africa -- Port Elizabeth , Mathematical ability -- Testing , Ability -- Testing , Guidance test battery for secondary pupils , Mathematics -- Study and teaching -- South Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: vital:10501 , http://hdl.handle.net/10948/708 , Educational tests and measurements -- South Africa -- Port Elizabeth , Mathematical ability -- Testing , Ability -- Testing , Guidance test battery for secondary pupils , Mathematics -- Study and teaching -- South Africa
- Description: School-related mistakes and low pass rates have led this researcher to perceive that some students are not adequately prepared for Mathematics 1. To address the problem of under-preparedness overseas universities use placement or diagnostic tests. Diagnostic testing identifies areas of weakness and provides information to guide the development of appropriate remedial support. This researcher embarked on a study to identify the sub-domains (criteria) that should be included in a diagnostic Mathematics test battery at the NMMU. An analysis of first-year curricula was undertaken to determine the required Mathematical pre-knowledge and skills entry-level students should have. Thereafter, the required pre-knowledge and skills were reflected against the standard grade school syllabi. From this it was determined that the school learners should acquire the necessary pre-knowledge and skills for university success as part of the school syllabus. However, in reality this is not the case as the researcher and other Mathematics lecturers identified a number of basic errors that incoming students make. This suggests that they have not developed all the required knowledge and skills. Furthermore, their performance in the matriculation examinations does not provide an adequate measure of the requisite Mathematical pre-knowledge and skills necessary for success at university-level Mathematics. No suitable existing diagnostic Mathematics test could be found. By utilizing both an action research as well as a test development methodology, the researcher thus proceeded to delineate the sub-domains that should be included in a diagnostic Mathematics test battery. Thereafter, test specifications were developed for two pilot tests and items were developed or sourced. The constructed response item-type was chosen for the pilot tests as it was argued that this item-type was more useful to use in a diagnostic test than a multiple-choice item format, for example. The pilot test battery, which consisted of a pilot Arithmetic and Algebra and Calculus tests, was administered to a sample of first-year students at the NMMU in 2004 and their performance in Mathematics at the end of the first year was tracked. Tests were scored holistically and analytically to provide a rich source of information. Thereafter, the test results were analysed to obtain evidence on the content validity of the pilot tests, including the item difficulty values and the item-total correlations; to determine the predictive validity of performance on the pilot tests with respect to final first-year Mathematics marks; and their reliability was determined using the Cronbach’s Alpha statistic. These findings suggest that appropriate sub-domains (criteria) were delineated and the items appropriately covered these sub-domains (i.e. the content validity of the pilot tests is acceptable). Furthermore, the predictive validity of the pilot ix tests was found to be acceptable in that significant correlations were found between the pilot tests and performance in first-year Mathematics. Finally, the pilot tests were found to be reliable. Based on the results, suggestions are made regarding how to refine the diagnostic test battery and the research related to it. The final diagnostic Mathematics test battery holds much potential to be able to assist in the early identification of at-risk students who can be timeously placed in developmentally appropriate Mathematics modules or provided with appropriate remedial intervention.
- Full Text:
- Date Issued: 2008
The design and testing of a national estuarine monitoring prgramme for South Africa
- Authors: Cilliers, Gerhard Jordaan
- Date: 2017
- Subjects: Estuaries -- South Africa Berg Estuary (South Africa)
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/15490 , vital:28258
- Description: Adaptive water resource management requires sound scientific based decisions, emanating from robust scientific data. The Department of Environmental Affairs are mandated for collaborative management of the South African coast, including estuaries, through the Integrated Coastal Management Act (Act no 24 of 2008) (ICMA). The Department Water and Sanitation is mandated through the National Water Act (Act no 36 of 1998) (NWA) to design, test and implement monitoring programmes to provide water resource data. Extensive freshwater monitoring programmes exist in South Africa but there is no standard long-term monitoring programme for estuaries. This study designed and tested a National Estuarine Monitoring Programme (NESMP) that is anchored in the NWA and the ICMA. The design was based on a review of international estuary monitoring programmes, consultation with relevant role players and five decades experience in the design, testing and implementation of water resource monitoring programmes by DWS. The main objective of this thesis is 1) to design a national estuarine monitoring programme 2) test the design of the programme for practical implementation by reflecting on collected data from case studies, and 3) design a Decision Support System to translate complex monitoring data into management information. The main objective of the NESMP is 1) to collect long-term data to determine trends in the condition of estuaries in South Africa and 2) to provide management orientated information for effective estuary management. The National Estuary Monitoring programme consists of three tiers. Tier 1 focuses on basic data including system variables and nutrient data. Tier 2 collects data required for the determination of the Ecological Water Requirements (EWR) of estuaries in accordance with a standardised method used by DWS. A tailor made monitoring programme addressing specific issues including pollution incidents and localised development pressure, making use of a combination of Tier 1 and Tier 2 components, forms Tier 3 of the NESMP. This study tested the Tier 1 components of the programme on 28 estuaries across the South African coast since 2012. However, due to space constraints, the data reflected on in this thesis, is only for case studies on the Berg and Breede estuaries between 2012 and 2016. The results indicate that the establishment and operation of the NESMP on South African estuaries making use of monthly surveys, and the deployment of permanent water quality loggers, in line with the proposed protocol, are possible. This does however require collaboration with other role players in order to share responsibility and associated resources. A tiered management structure ensures national, regional and local level implementation takes place seamlessly. A decision support system (DSS) was also designed as part of this thesis to assist with data interpretation and the creation of management orientated information. This DSS includes a measurement of the percentage exceedance of the Threshold of Potential Concern (TPC), which acts as an early warning system for water resource deterioration. This study showed that effective collaboration will ensure the sustainability of the NESMP. Implementation of the more complex and resource intensive Tier 2 and Tier 3 sampling will however need to be investigated to establish the overall success of the NESMP.
- Full Text:
- Date Issued: 2017
- Authors: Cilliers, Gerhard Jordaan
- Date: 2017
- Subjects: Estuaries -- South Africa Berg Estuary (South Africa)
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/15490 , vital:28258
- Description: Adaptive water resource management requires sound scientific based decisions, emanating from robust scientific data. The Department of Environmental Affairs are mandated for collaborative management of the South African coast, including estuaries, through the Integrated Coastal Management Act (Act no 24 of 2008) (ICMA). The Department Water and Sanitation is mandated through the National Water Act (Act no 36 of 1998) (NWA) to design, test and implement monitoring programmes to provide water resource data. Extensive freshwater monitoring programmes exist in South Africa but there is no standard long-term monitoring programme for estuaries. This study designed and tested a National Estuarine Monitoring Programme (NESMP) that is anchored in the NWA and the ICMA. The design was based on a review of international estuary monitoring programmes, consultation with relevant role players and five decades experience in the design, testing and implementation of water resource monitoring programmes by DWS. The main objective of this thesis is 1) to design a national estuarine monitoring programme 2) test the design of the programme for practical implementation by reflecting on collected data from case studies, and 3) design a Decision Support System to translate complex monitoring data into management information. The main objective of the NESMP is 1) to collect long-term data to determine trends in the condition of estuaries in South Africa and 2) to provide management orientated information for effective estuary management. The National Estuary Monitoring programme consists of three tiers. Tier 1 focuses on basic data including system variables and nutrient data. Tier 2 collects data required for the determination of the Ecological Water Requirements (EWR) of estuaries in accordance with a standardised method used by DWS. A tailor made monitoring programme addressing specific issues including pollution incidents and localised development pressure, making use of a combination of Tier 1 and Tier 2 components, forms Tier 3 of the NESMP. This study tested the Tier 1 components of the programme on 28 estuaries across the South African coast since 2012. However, due to space constraints, the data reflected on in this thesis, is only for case studies on the Berg and Breede estuaries between 2012 and 2016. The results indicate that the establishment and operation of the NESMP on South African estuaries making use of monthly surveys, and the deployment of permanent water quality loggers, in line with the proposed protocol, are possible. This does however require collaboration with other role players in order to share responsibility and associated resources. A tiered management structure ensures national, regional and local level implementation takes place seamlessly. A decision support system (DSS) was also designed as part of this thesis to assist with data interpretation and the creation of management orientated information. This DSS includes a measurement of the percentage exceedance of the Threshold of Potential Concern (TPC), which acts as an early warning system for water resource deterioration. This study showed that effective collaboration will ensure the sustainability of the NESMP. Implementation of the more complex and resource intensive Tier 2 and Tier 3 sampling will however need to be investigated to establish the overall success of the NESMP.
- Full Text:
- Date Issued: 2017
In vivo toxicological evaluation of peptide conjugated gold nanoparticles for potential application in colorectal cancer diagnosis
- Authors: Adewale, Olusola Bolaji
- Date: 2018
- Subjects: Nanostructured materials -- Toxicology , Colon (Anatomy) -- Cancer Rectum -- Cancer
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/50133 , vital:42050
- Description: Colorectal cancer (CRC) is among the leading cause of cancer-related deaths in South Africa and worldwide. Efforts are being made at finding improved diagnostic tools, as early detection (before metastasis) is a major factor in CRC treatment. Colonoscopy is the most reliable detection method, but is a specialised and expensive procedure, which is invasive, not readily available and not patient-friendly. There is a risk of developing interval cancers, as colonoscopies are performed every 10 years after the age of 40. The development of non-invasive, cost efficient and readily available diagnostic tools to CRC, which can be performed at more regular intervals, using tumour-targeting molecular imaging agents, is of urgent attention. Gold nanoparticles (AuNPs) possess several physicochemical properties, including ease of synthesis, biocompatibility, and the ability to be conjugated by ligands or biomolecules such as polyethylene glycol (PEG) and peptides for improved stability, tissue targeting and selectivity. These factors potentiate the role in biomedical applications, including cancer theranostics. Conjugation of AuNPs with a targeting molecule (e.g. antibody or peptide) is directed against cancer cell receptors. The peptides, p.C, p.L, and p.14, bind to CRC cells in vitro. Conjugation of AuNPs with these peptides should be investigated for CRC diagnosis in vivo, as it is hypothesised to allow examinations at shorter intervals through imaging techniques. This could reduce the risk of interval cancers, but before developing this novel tool, in vivo toxicity evaluations are essential. This study was therefore aimed at investigating the short- and long-term toxicological effects of a single intravenous injection of peptides (p.C, p.L, and p.14) conjugated to AuNPs in a healthy rat model. Citrate-capped AuNPs were synthesised by the citrate-reduction method, and conjugated with each peptide (biotinylated) using a combination of PEG (99% PEG-OH and 1% PEG-biotin) as a stabilising agent and linker, via biotin-streptavidin interaction. Healthy male Wistar rats were intravenously injected with 14 nm citrate-AuNPs, PEG-, p.C-PEG, p.L-PEG, and p.14-PEG-AuNPs (100 μg/kg body weight), and the control rats were injected with phosphate buffered saline. The animals were monitored for behavioural, physiological, biochemical, haematological and histological changes, as well as inflammatory responses. Phase 1 rats were sacrificed 2 weeks post-injection to determine the immediate or acute toxicity of the AuNPs, while phase 2 animals were sacrificed 12 weeks post-injection, to investigate the delayed or persistence toxicity of the AuNPs. Results revealed no significant toxicities with the citrate, PEG-, p.C-PEG and p.14-PEG-AuNPs over 12 weeks post-exposure, as evidenced by biochemical assays such as serum marker enzymes, liver and kidney function markers, and cholestatic indicators; haematological parameters; oxidative stress markers; and histopathological examinations. P.L-PEG-AuNPs, however, caused significant toxicity (p<0.05) to rats, as evidenced by increased relative liver weight, increased malondialdehyde levels, and total white blood cell counts 2 weeks post-exposure when compared to the control group. This was, however, reversed during the 12 weeks post-exposure. Further, there were no evidence of inflammatory responses, using pro-inflammatory markers including phospho interleukin 18 (IL-18) and interferon-γ (IFN-γ), as indicated by immunohistochemical staining of the liver, spleen, kidney and colon of rats 2 weeks post-injection of AuNPs. Citrate, PEG-, p.C-PEG, and p.14-PEG-AuNPs did not induce immediate, acute or persistent toxicity, while p.L-PEG-AuNPs induced a transient acute toxicity. It can be concluded that 14 nm spherical citrate-AuNPs at 100 μg/kg body weight is a good candidate for biomedical applications, and as a suitable carrier for diagnostic and/or therapeutic molecules. Combination of 99% PEG-OH and 1% PEG-biotin is an appropriate option for stabilising AuNPs in biological environment, and conjugating secondary diagnostic or therapeutic biomolecules or agents to citrate-capped AuNPs. Peptide-conjugated AuNPs are suitable for the development into a diagnostic tool for CRC in vivo.
- Full Text:
- Date Issued: 2018
- Authors: Adewale, Olusola Bolaji
- Date: 2018
- Subjects: Nanostructured materials -- Toxicology , Colon (Anatomy) -- Cancer Rectum -- Cancer
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/50133 , vital:42050
- Description: Colorectal cancer (CRC) is among the leading cause of cancer-related deaths in South Africa and worldwide. Efforts are being made at finding improved diagnostic tools, as early detection (before metastasis) is a major factor in CRC treatment. Colonoscopy is the most reliable detection method, but is a specialised and expensive procedure, which is invasive, not readily available and not patient-friendly. There is a risk of developing interval cancers, as colonoscopies are performed every 10 years after the age of 40. The development of non-invasive, cost efficient and readily available diagnostic tools to CRC, which can be performed at more regular intervals, using tumour-targeting molecular imaging agents, is of urgent attention. Gold nanoparticles (AuNPs) possess several physicochemical properties, including ease of synthesis, biocompatibility, and the ability to be conjugated by ligands or biomolecules such as polyethylene glycol (PEG) and peptides for improved stability, tissue targeting and selectivity. These factors potentiate the role in biomedical applications, including cancer theranostics. Conjugation of AuNPs with a targeting molecule (e.g. antibody or peptide) is directed against cancer cell receptors. The peptides, p.C, p.L, and p.14, bind to CRC cells in vitro. Conjugation of AuNPs with these peptides should be investigated for CRC diagnosis in vivo, as it is hypothesised to allow examinations at shorter intervals through imaging techniques. This could reduce the risk of interval cancers, but before developing this novel tool, in vivo toxicity evaluations are essential. This study was therefore aimed at investigating the short- and long-term toxicological effects of a single intravenous injection of peptides (p.C, p.L, and p.14) conjugated to AuNPs in a healthy rat model. Citrate-capped AuNPs were synthesised by the citrate-reduction method, and conjugated with each peptide (biotinylated) using a combination of PEG (99% PEG-OH and 1% PEG-biotin) as a stabilising agent and linker, via biotin-streptavidin interaction. Healthy male Wistar rats were intravenously injected with 14 nm citrate-AuNPs, PEG-, p.C-PEG, p.L-PEG, and p.14-PEG-AuNPs (100 μg/kg body weight), and the control rats were injected with phosphate buffered saline. The animals were monitored for behavioural, physiological, biochemical, haematological and histological changes, as well as inflammatory responses. Phase 1 rats were sacrificed 2 weeks post-injection to determine the immediate or acute toxicity of the AuNPs, while phase 2 animals were sacrificed 12 weeks post-injection, to investigate the delayed or persistence toxicity of the AuNPs. Results revealed no significant toxicities with the citrate, PEG-, p.C-PEG and p.14-PEG-AuNPs over 12 weeks post-exposure, as evidenced by biochemical assays such as serum marker enzymes, liver and kidney function markers, and cholestatic indicators; haematological parameters; oxidative stress markers; and histopathological examinations. P.L-PEG-AuNPs, however, caused significant toxicity (p<0.05) to rats, as evidenced by increased relative liver weight, increased malondialdehyde levels, and total white blood cell counts 2 weeks post-exposure when compared to the control group. This was, however, reversed during the 12 weeks post-exposure. Further, there were no evidence of inflammatory responses, using pro-inflammatory markers including phospho interleukin 18 (IL-18) and interferon-γ (IFN-γ), as indicated by immunohistochemical staining of the liver, spleen, kidney and colon of rats 2 weeks post-injection of AuNPs. Citrate, PEG-, p.C-PEG, and p.14-PEG-AuNPs did not induce immediate, acute or persistent toxicity, while p.L-PEG-AuNPs induced a transient acute toxicity. It can be concluded that 14 nm spherical citrate-AuNPs at 100 μg/kg body weight is a good candidate for biomedical applications, and as a suitable carrier for diagnostic and/or therapeutic molecules. Combination of 99% PEG-OH and 1% PEG-biotin is an appropriate option for stabilising AuNPs in biological environment, and conjugating secondary diagnostic or therapeutic biomolecules or agents to citrate-capped AuNPs. Peptide-conjugated AuNPs are suitable for the development into a diagnostic tool for CRC in vivo.
- Full Text:
- Date Issued: 2018
The effect of gamma radiation on the physical and chemical properties of wool
- Authors: Rapakgadi, Jim
- Date: 2020
- Subjects: Semiconductors -- Effect of radiation on
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/47668 , vital:40263
- Description: Pathogens (e.g. viruses, spores and bacteria) remain one of the biggest threats to trading and the economy of natural fibre products, such as wool, mohair and cotton. One of the means to kill or eliminate pathogens is by radiation sterilisation, involving electromagnetic radiation (e.g. gamma radiation and UV light). The research, reported in this thesis, was aimed at establishing the effect of gamma irradiation dosage on the various quality related physical and chemical characteristics of four different types of merino wool when treated in situ in scoured and greasy state in mini-bale form. Specific properties studied include wool colour (yellowness and brightness), solubility (alkali solubility and urea bisulphite solubility), fibre diameter and tensile properties (staple strength and bundle tenacity). Standard analytical and diagnostic techniques were used to assess changes, if any, in the above mentioned properties due to the radiation treatment. Nominal radiation dosages, ranging from 25 kGy to 75 kGy (actual measured from 0 kGy to 92.2 kGy) were used, 50 kGy normally being regarded as sufficient to destroy the pathogens in question. It was found that nominial gamma radiation dosages of up to 92.2 kGy did not significantly affect fibre diameter or staple length, indicating that no irreversible swelling of the wool fibres occurred as a result of gamma irradiation. Alkali and urea bisulphite solubility as well as yellowness, on the other hand, showed a systematic increase with an increase in irradiation dose, indicating that changes occurred at molecular level. Fibre tensile properties (staple strength and bundle tenacity) were also affected but to a much lesser extent than solubility and colour. The various merino wool types studied showed similar reactions to the radiation treatment, irrespective of the wool quality and type and also whether they were treated in greasy or scoured form.
- Full Text:
- Date Issued: 2020
- Authors: Rapakgadi, Jim
- Date: 2020
- Subjects: Semiconductors -- Effect of radiation on
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/47668 , vital:40263
- Description: Pathogens (e.g. viruses, spores and bacteria) remain one of the biggest threats to trading and the economy of natural fibre products, such as wool, mohair and cotton. One of the means to kill or eliminate pathogens is by radiation sterilisation, involving electromagnetic radiation (e.g. gamma radiation and UV light). The research, reported in this thesis, was aimed at establishing the effect of gamma irradiation dosage on the various quality related physical and chemical characteristics of four different types of merino wool when treated in situ in scoured and greasy state in mini-bale form. Specific properties studied include wool colour (yellowness and brightness), solubility (alkali solubility and urea bisulphite solubility), fibre diameter and tensile properties (staple strength and bundle tenacity). Standard analytical and diagnostic techniques were used to assess changes, if any, in the above mentioned properties due to the radiation treatment. Nominal radiation dosages, ranging from 25 kGy to 75 kGy (actual measured from 0 kGy to 92.2 kGy) were used, 50 kGy normally being regarded as sufficient to destroy the pathogens in question. It was found that nominial gamma radiation dosages of up to 92.2 kGy did not significantly affect fibre diameter or staple length, indicating that no irreversible swelling of the wool fibres occurred as a result of gamma irradiation. Alkali and urea bisulphite solubility as well as yellowness, on the other hand, showed a systematic increase with an increase in irradiation dose, indicating that changes occurred at molecular level. Fibre tensile properties (staple strength and bundle tenacity) were also affected but to a much lesser extent than solubility and colour. The various merino wool types studied showed similar reactions to the radiation treatment, irrespective of the wool quality and type and also whether they were treated in greasy or scoured form.
- Full Text:
- Date Issued: 2020
Macrophytes as indicators of physico-chemical factors in South African Estuaries
- Authors: Bezuidenhout, Chantel
- Date: 2011
- Subjects: Estuarine ecology -- South Africa , Aquatic plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10597 , http://hdl.handle.net/10948/1387 , Estuarine ecology -- South Africa , Aquatic plants -- South Africa
- Description: This study investigated the response of macrophytes to physico-chemical factors in seven South African estuaries and showed that dominant salt marsh species that occur in different estuaries respond to the same environmental factors. The most important variables influencing distribution were elevation, water level, sediment- and groundwater electrical conductivity and depth to the water table. In permanently open estuaries (Kromme and Olifants) transect surveys identified three distinct vegetation zones i.e. submerged macrophytes, intertidal salt marsh and supratidal salt marsh. In the Kromme Estuary intertidal salt marsh (81.2 ha) covered extensive areas, whereas supratidal (143 ha) and floodplain (797.1 ha) salt marsh were dominant in the Olifants Estuary. Transect surveys identified four distinct vegetation zones (submerged macrophytes, intertidal salt marsh, supratidal salt marsh and reeds and sedges) in the temporarily open/closed estuaries (Mngazi, Great Brak, East Kleinemonde and Seekoei estuaries), although all zones did not occur in all of the estuaries sampled. In the Mngazi Estuary reeds and sedges (1.09 ha) covered extensive areas (no submerged or salt marsh vegetation was present), whereas salt marsh (Great Brak 24.45 ha, East Kleinemonde 17.44 ha and Seekoei 12.9 ha) vegetation was dominant in the other estuaries. Despite the geographic differences, environmental factors influencing macrophyte distribution were similar in all estuaries. Canonical Correspondence Analysis showed that vegetation distribution was significantly affected by elevation, groundwater and sediment electrical conductivity and depth to groundwater. Supratidal species were associated with a greater depth to groundwater (1.2 ± 0.04 m; n = 153) compared to intertidal species (0.5 ± 0.01 m; n = 361). Correlation analysis showed that water level and rainfall were correlated with groundwater electrical conductivity in the lower and upper intertidal zones for all the estuaries sampled. These data indicate the influence of the estuary channel on the physico-chemical conditions of the salt marsh. Low rainfall (16 ± 3.3 mm per annum) in the Olifants Estuary (30-100 mS cm-1) and lack of freshwater flooding in the Kromme Estuary (42-115 mS cm-1) have resulted in high sediment electrical conductivity by comparison with the other estuaries sampled. In the Orange River Estuary approximately 70 ha of salt marsh have been lost through the building of a causeway and flood control levees. Even though salt marsh vegetation can tolerate hypersaline sediments by using the less saline water table, the groundwater at the Orange River Estuary was too saline (avg. of 90.3 ± 6.55 mS cm-1, n = 38) to be of use to the dominant floodplain species, Sarcocornia pillansii. Freshwater inflow to estuaries is important in maintaining longitudinal salinity gradients and reducing hypersaline conditions. In the Olifants Estuary and the Orange River Estuary where supratidal salt marsh is dominant, freshwater inflow is important in raising the water level and maintaining the depth to groundwater and salinity. Lack of freshwater inflow to the Kromme Estuary has highlighted the importance of rainfall in maintaining sediment salinity within acceptable ranges for the salt marsh. Macrophytes are relatively good indicators of physico-chemical factors in estuaries. From an understanding of the response of specific species to environmental variables, ecological water requirements can be set and sensitive areas can be rehabilitated.
- Full Text:
- Date Issued: 2011
- Authors: Bezuidenhout, Chantel
- Date: 2011
- Subjects: Estuarine ecology -- South Africa , Aquatic plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10597 , http://hdl.handle.net/10948/1387 , Estuarine ecology -- South Africa , Aquatic plants -- South Africa
- Description: This study investigated the response of macrophytes to physico-chemical factors in seven South African estuaries and showed that dominant salt marsh species that occur in different estuaries respond to the same environmental factors. The most important variables influencing distribution were elevation, water level, sediment- and groundwater electrical conductivity and depth to the water table. In permanently open estuaries (Kromme and Olifants) transect surveys identified three distinct vegetation zones i.e. submerged macrophytes, intertidal salt marsh and supratidal salt marsh. In the Kromme Estuary intertidal salt marsh (81.2 ha) covered extensive areas, whereas supratidal (143 ha) and floodplain (797.1 ha) salt marsh were dominant in the Olifants Estuary. Transect surveys identified four distinct vegetation zones (submerged macrophytes, intertidal salt marsh, supratidal salt marsh and reeds and sedges) in the temporarily open/closed estuaries (Mngazi, Great Brak, East Kleinemonde and Seekoei estuaries), although all zones did not occur in all of the estuaries sampled. In the Mngazi Estuary reeds and sedges (1.09 ha) covered extensive areas (no submerged or salt marsh vegetation was present), whereas salt marsh (Great Brak 24.45 ha, East Kleinemonde 17.44 ha and Seekoei 12.9 ha) vegetation was dominant in the other estuaries. Despite the geographic differences, environmental factors influencing macrophyte distribution were similar in all estuaries. Canonical Correspondence Analysis showed that vegetation distribution was significantly affected by elevation, groundwater and sediment electrical conductivity and depth to groundwater. Supratidal species were associated with a greater depth to groundwater (1.2 ± 0.04 m; n = 153) compared to intertidal species (0.5 ± 0.01 m; n = 361). Correlation analysis showed that water level and rainfall were correlated with groundwater electrical conductivity in the lower and upper intertidal zones for all the estuaries sampled. These data indicate the influence of the estuary channel on the physico-chemical conditions of the salt marsh. Low rainfall (16 ± 3.3 mm per annum) in the Olifants Estuary (30-100 mS cm-1) and lack of freshwater flooding in the Kromme Estuary (42-115 mS cm-1) have resulted in high sediment electrical conductivity by comparison with the other estuaries sampled. In the Orange River Estuary approximately 70 ha of salt marsh have been lost through the building of a causeway and flood control levees. Even though salt marsh vegetation can tolerate hypersaline sediments by using the less saline water table, the groundwater at the Orange River Estuary was too saline (avg. of 90.3 ± 6.55 mS cm-1, n = 38) to be of use to the dominant floodplain species, Sarcocornia pillansii. Freshwater inflow to estuaries is important in maintaining longitudinal salinity gradients and reducing hypersaline conditions. In the Olifants Estuary and the Orange River Estuary where supratidal salt marsh is dominant, freshwater inflow is important in raising the water level and maintaining the depth to groundwater and salinity. Lack of freshwater inflow to the Kromme Estuary has highlighted the importance of rainfall in maintaining sediment salinity within acceptable ranges for the salt marsh. Macrophytes are relatively good indicators of physico-chemical factors in estuaries. From an understanding of the response of specific species to environmental variables, ecological water requirements can be set and sensitive areas can be rehabilitated.
- Full Text:
- Date Issued: 2011