Characterization of polychlorinated biphenyl residues in the North End lake and Port Elizabeth harbour, South Africa
- Authors: Kampire, Edwige
- Date: 2015
- Subjects: Marine pollution -- South Africa -- Port Elizabeth , Estuarine pollution -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/7903 , vital:24320
- Description: Persistent organic pollutants (POPs), including polychlorinated biphenyls (PCBs) are widespread in aquatic systems, they can bioaccumulate in the tissues of aquatic organisms, especially fish as they occupy a position near the top of the aquatic food web. PCBs are among the most toxic substances and have been shown to cause many adverse effects to humans and wildlife. High health risks are associated with populations that follow a diet high in fat content such as fish and shellfish in which PCBs bioaccumulate. Given the importance of industries and the potential health concerns of exposure to PCBs, the lack of information on environmental levels of PCBs in South Africa (SA) is significant and concerning. Less attention has been directed to analysis of PCBs in the South African environments due to high cost and lack of appropriate equipment. This study was the first conducted in order to assess the levels of PCBs in the environment of Nelson Mandela Bay Municipality (Port Elizabeth). The research was directed at determining the PCB levels in water, sediments, fish and mussels collected in the Nelson Mandela Bay Municipality. The sampling sites, North End Lake (NEL) and Port Elizabeth Harbour (PEH) were selected based on their location and the importance of activities taking place in these areas. In total 456 samples of water (dissolved and particulate phases), sediments, mussels and tissues of fish were analysed. Suitable analytical methods were based on the equipment and materials available at the Nelson Mandela Metropolitan University. Gas chromatography-mass spectrometry (GC/MS) was used to quantify PCBs in the samples using the internal standard method. Six indicator congeners (PCB nos. 28, 52, 101, 138, 153, 180) were chosen because they are mainly present in most PCB mixtures in environmental samples and they are recommended for regular monitoring. These congeners represent about 50% of the total non-dioxin like (NDL) PCBs in food. All these congeners were detected in the samples analysed. The total PCB concentrations in the sediments from the NEL and PEH ranged from 1.60 to 3.06 and from 0.56 to 2.35 ng g-1 dry weight, respectively. The concentrations of total PCBs in Mytilus galloprovincialis ranged from 14.48 to 21.37 ng g-1 wet weight and from 20.84 to 31.34 ng g-1 wet weight in Perna perna. Total PCBs in water ranged from 0.18 to 0.355 ng L-1. The concentrations of total PCBs in the liver, gonads, gills and muscle were 95.69, 57.49, 44.63, 34.14 ng g-1 lipid weight in Cyprinus carpio and 119.73, 59.21, 49.78, 34.63 ng g-1 in Oreochromis mossambicus, respectively. Fish liver was the most contaminated organ due to its high lipid content compared to other parts of fish analysed. The NEL was found to be more contaminated than the PEH. The main potential sources of PCB pollutants in both areas of this study are industrial and municipal discharges. The NEL is surrounded by many industries and serves as a potential pollutant sink due to wastewater and inflow entering into this lake. Four 0.227 kg meals of the edible part of fish (muscle) per month were recommended based on the non-cancer health endpoint and one 0.227 kg meal per month was recommended based on the cancer health endpoint. This research contributed to notify the public and relevant governmental departments on the PCB pollution status of sediments, water and aquatic life in the PEH and NEL.
- Full Text:
- Date Issued: 2015
- Authors: Kampire, Edwige
- Date: 2015
- Subjects: Marine pollution -- South Africa -- Port Elizabeth , Estuarine pollution -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/7903 , vital:24320
- Description: Persistent organic pollutants (POPs), including polychlorinated biphenyls (PCBs) are widespread in aquatic systems, they can bioaccumulate in the tissues of aquatic organisms, especially fish as they occupy a position near the top of the aquatic food web. PCBs are among the most toxic substances and have been shown to cause many adverse effects to humans and wildlife. High health risks are associated with populations that follow a diet high in fat content such as fish and shellfish in which PCBs bioaccumulate. Given the importance of industries and the potential health concerns of exposure to PCBs, the lack of information on environmental levels of PCBs in South Africa (SA) is significant and concerning. Less attention has been directed to analysis of PCBs in the South African environments due to high cost and lack of appropriate equipment. This study was the first conducted in order to assess the levels of PCBs in the environment of Nelson Mandela Bay Municipality (Port Elizabeth). The research was directed at determining the PCB levels in water, sediments, fish and mussels collected in the Nelson Mandela Bay Municipality. The sampling sites, North End Lake (NEL) and Port Elizabeth Harbour (PEH) were selected based on their location and the importance of activities taking place in these areas. In total 456 samples of water (dissolved and particulate phases), sediments, mussels and tissues of fish were analysed. Suitable analytical methods were based on the equipment and materials available at the Nelson Mandela Metropolitan University. Gas chromatography-mass spectrometry (GC/MS) was used to quantify PCBs in the samples using the internal standard method. Six indicator congeners (PCB nos. 28, 52, 101, 138, 153, 180) were chosen because they are mainly present in most PCB mixtures in environmental samples and they are recommended for regular monitoring. These congeners represent about 50% of the total non-dioxin like (NDL) PCBs in food. All these congeners were detected in the samples analysed. The total PCB concentrations in the sediments from the NEL and PEH ranged from 1.60 to 3.06 and from 0.56 to 2.35 ng g-1 dry weight, respectively. The concentrations of total PCBs in Mytilus galloprovincialis ranged from 14.48 to 21.37 ng g-1 wet weight and from 20.84 to 31.34 ng g-1 wet weight in Perna perna. Total PCBs in water ranged from 0.18 to 0.355 ng L-1. The concentrations of total PCBs in the liver, gonads, gills and muscle were 95.69, 57.49, 44.63, 34.14 ng g-1 lipid weight in Cyprinus carpio and 119.73, 59.21, 49.78, 34.63 ng g-1 in Oreochromis mossambicus, respectively. Fish liver was the most contaminated organ due to its high lipid content compared to other parts of fish analysed. The NEL was found to be more contaminated than the PEH. The main potential sources of PCB pollutants in both areas of this study are industrial and municipal discharges. The NEL is surrounded by many industries and serves as a potential pollutant sink due to wastewater and inflow entering into this lake. Four 0.227 kg meals of the edible part of fish (muscle) per month were recommended based on the non-cancer health endpoint and one 0.227 kg meal per month was recommended based on the cancer health endpoint. This research contributed to notify the public and relevant governmental departments on the PCB pollution status of sediments, water and aquatic life in the PEH and NEL.
- Full Text:
- Date Issued: 2015
Patterns and drivers of benthic macrofouna to support systematic conservation planning for marine unconsolidated sediment ecosystems
- Authors: Karenyi, Natasha
- Date: 2014
- Subjects: Marine sediments -- Microbiology , Biotic communities , Ecosystem management , Conservation of natural resources
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10355 , http://hdl.handle.net/10948/d1020989
- Description: Marine unconsolidated sediments constitute the largest ecosystems on earth in terms of spatial coverage, but there are still critical gaps in the science required to support conservation and ecosystem-based management. This is mainly due to the inaccessibility of these ecosystems in wave-exposed environments or deeper waters and the difficulty in observing biota in their three-dimensional sedimentary habitat. Currently, the physical driving processes of intertidal unconsolidated sediment ecosystems are much better understood than those of the subtidal ecosystems. However, these ecosystems are linked through water and sediment movement. This thesis, therefore, considers the continuum of unconsolidated sediment ecosystems across the entire continental shelf (i.e. intertidal to the shelf edge). The aim of this thesis was two-fold; (i) to advance the foundational understanding of biodiversity patterns and driving processes in unconsolidated sediment habitats, and (ii) to apply this knowledge in the development of a systematic conservation plan for marine unconsolidated sediment ecosystems. The South African west coast continental shelf was used as a case study in order to represent Eastern boundary upwelling regions. This study sought to investigate biodiversity patterns in macro-infaunal communities and determine their driving processes for incorporation into habitat classifications and the development of a habitat map. Systematic conservation plans require a map of biodiversity patterns and processes, and quantitative conservation targets to ensure representation of all biodiversity features including habitats.in marine protected areas. This thesis provided these key elements by classifying the unconsolidated sediment habitats and determining habitat-specific evidence-based conservation targets to support conservation of these important ecosystems. The application of these elements was then demonstrated in a systematic conservation plan for the unconsolidated sediment ecosystems of the South African west coast. Diversity patterns were examined using physical and macro-infauna data, ranging from the beach to the shelf edge (0-412 m). These data were analysed to develop two different habitat classifications, namely seascapes derived from geophysical and biophysical data, and biotopes derived from the combination of macro-infaunal and physical data. Multivariate analyses of 13 physical variables identified eight seascapes for the unconsolidated sediment samples from 48 sites on the South African west coast. These were based on depth, slope, sediment type, and upwelling-related processes (i.e. maximum chlorophyll concentration, sediment organic carbon content and austral summer bottom oxygen concentration). Latitude and bottom temperature were not considered major drivers of seascapes on the west coast because latitude closely reflected changes in upwelling-related processes and the temperature range was narrow across the shelf. This study revealed that productivity, a biophysical variable not usually included in geo-physical habitat classifications, played a significant role in the definition of seascapes on the South African west coast. It is therefore recommended that productivity be included in future seascape classifications to improve the utility of these classifications particularly in areas of variable productivity. Seascapes should, however, be tested against biological data to improve the understanding of key physical drivers of communities in unconsolidated sediment ecosystems. Macro-infaunal community distributions were determined along with their physical drivers for the unconsolidated sediments of the South African west coast. A total of 44 828 individuals from 469 taxa were identified from 48 sites representing 46.2 m2 of seafloor. Seven distinct macro-infaunal communities were defined through multivariate analyses and their key characteristic and distinguishing species were identified. These communities reflected five depth zones across the shelf, namely beach, inner shelf (10-42 m), middle shelf (60-142 m), outer shelf (150-357 m) and shelf edge (348-412 m). The processes driving the community structure of these depth zones were postulated to be tides, wave turbulence, seasonal hypoxia, habitat stability and homogeneity, and internal tides and/or shelf break upwelling, with drivers listed in order of increasing influence with depth. The middle shelf was further separated into three distinct communities based on sediment type, sediment organic carbon content and frequency of hypoxia. Variations in water turbulence, sediment grain size, upwelling-related variables and riverine sediment input were identified as the likely primary drivers of macro-infaunal community patterns. This chapter culminated in the development of a biotope classification based on the combination of macro-infaunal communities and their physical habitats (i.e. biotopes). South Africa has developed an expert-derived National Marine and Coastal Habitat (SANMC) Classification System which is used as a biodiversity surrogate in ecosystem assessment and spatial planning. This thesis tested the validity of this classification and the data derived Seascape classification against macro-infauna species abundance and biomass data in an effort to determine how well the different classifications represent macro-infaunal diversity of the west coast. These two classifications were also compared to the Biotope classification which combines macro-infaunal communities with their physical habitats. A canonical analysis of principle coordinates (CAP) was utilised to test the success with which each sample was allocated to the relevant habitat type in each classification. The total allocation success for each classification was used as a measure of effectiveness in terms of representing biodiversity patterns. Both classifications had similar allocation successes of 89-92 percent and 92-94 percent for the Seascape and National Habitat Classification respectively, but either over- or under-classified the macrofauna communities. The Biotope classification had the highest allocation success (98 percent), therefore it is the most accurate reflection of the macrofauna biodiversity patterns on the west coast. A key finding of this study was the increasing accuracy of classifications from physically- to expert- to biologically-derived habitat classifications. In this thesis, the Biotope classification was deemed the best representative of biodiversity patterns and was therefore used to produce the Biotope map for use in spatial assessment and planning. The distinct depth patterns that emerged in both the Seascape and Biotope classifications highlighted the need for further investigation of the relationship between depth and biodiversity. Despite variability in macro-infaunal communities, a general unifying pattern in biodiversity across the shelf was sought. Three relationships between depth and species richness have been described in the literature; namely a unimodal pattern, a positively linear relationship with depth, and no relationship between depth and species richness. These hypotheses were tested on the west coast. Two different species richness metrics were utilised to test the depth-diversity relationship, namely observed species density (spp.0.2m-2) and estimated species richness (spp.site-1). Observed species density increased from the beach to the shelf edge (350 m), then decreased to 412 m. The decline may have been due to difficulty in detecting species at greater depths as a result of sampling challenges. The inclusion of an innovative extrapolative method for estimating species richness (the capture-recapture heterogeneity model) within the Bayesian statistical framework mitigated the effects of species detection heterogeneity and revealed that species richness actually increased continuously across the shelf from beach to shelf edge. Thus the general relationship between depth and species richness is positively linear on the west coast of South Africa The new macro-infauna dataset and biotope map provided the opportunity to develop the first habitat-specific evidence-based conservation targets for unconsolidated sediments of the west coast. Species-Area Relationship (SAR) based conservation targets were developed for the biotopes using a modification of the generally accepted methodology. The accepted methodology has three steps (i) the estimation of total species richness for each habitat using the Bootstrap asymptotic estimator, (ii) the calculation of the slope of the species area curve (i.e. the z-value), and (iii) the calculation of targets representing 80 percent of the species. The inclusion of an innovative extrapolative species richness estimator, the Multi-species Site Occupancy Model (MSOM) provided better species richness estimation than the more conventional bootstrap species richness estimator, even though both are based on species accumulation. The MSOM, applied in the Bayesian statistical framework takes detectability of a species into account.
- Full Text:
- Date Issued: 2014
- Authors: Karenyi, Natasha
- Date: 2014
- Subjects: Marine sediments -- Microbiology , Biotic communities , Ecosystem management , Conservation of natural resources
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10355 , http://hdl.handle.net/10948/d1020989
- Description: Marine unconsolidated sediments constitute the largest ecosystems on earth in terms of spatial coverage, but there are still critical gaps in the science required to support conservation and ecosystem-based management. This is mainly due to the inaccessibility of these ecosystems in wave-exposed environments or deeper waters and the difficulty in observing biota in their three-dimensional sedimentary habitat. Currently, the physical driving processes of intertidal unconsolidated sediment ecosystems are much better understood than those of the subtidal ecosystems. However, these ecosystems are linked through water and sediment movement. This thesis, therefore, considers the continuum of unconsolidated sediment ecosystems across the entire continental shelf (i.e. intertidal to the shelf edge). The aim of this thesis was two-fold; (i) to advance the foundational understanding of biodiversity patterns and driving processes in unconsolidated sediment habitats, and (ii) to apply this knowledge in the development of a systematic conservation plan for marine unconsolidated sediment ecosystems. The South African west coast continental shelf was used as a case study in order to represent Eastern boundary upwelling regions. This study sought to investigate biodiversity patterns in macro-infaunal communities and determine their driving processes for incorporation into habitat classifications and the development of a habitat map. Systematic conservation plans require a map of biodiversity patterns and processes, and quantitative conservation targets to ensure representation of all biodiversity features including habitats.in marine protected areas. This thesis provided these key elements by classifying the unconsolidated sediment habitats and determining habitat-specific evidence-based conservation targets to support conservation of these important ecosystems. The application of these elements was then demonstrated in a systematic conservation plan for the unconsolidated sediment ecosystems of the South African west coast. Diversity patterns were examined using physical and macro-infauna data, ranging from the beach to the shelf edge (0-412 m). These data were analysed to develop two different habitat classifications, namely seascapes derived from geophysical and biophysical data, and biotopes derived from the combination of macro-infaunal and physical data. Multivariate analyses of 13 physical variables identified eight seascapes for the unconsolidated sediment samples from 48 sites on the South African west coast. These were based on depth, slope, sediment type, and upwelling-related processes (i.e. maximum chlorophyll concentration, sediment organic carbon content and austral summer bottom oxygen concentration). Latitude and bottom temperature were not considered major drivers of seascapes on the west coast because latitude closely reflected changes in upwelling-related processes and the temperature range was narrow across the shelf. This study revealed that productivity, a biophysical variable not usually included in geo-physical habitat classifications, played a significant role in the definition of seascapes on the South African west coast. It is therefore recommended that productivity be included in future seascape classifications to improve the utility of these classifications particularly in areas of variable productivity. Seascapes should, however, be tested against biological data to improve the understanding of key physical drivers of communities in unconsolidated sediment ecosystems. Macro-infaunal community distributions were determined along with their physical drivers for the unconsolidated sediments of the South African west coast. A total of 44 828 individuals from 469 taxa were identified from 48 sites representing 46.2 m2 of seafloor. Seven distinct macro-infaunal communities were defined through multivariate analyses and their key characteristic and distinguishing species were identified. These communities reflected five depth zones across the shelf, namely beach, inner shelf (10-42 m), middle shelf (60-142 m), outer shelf (150-357 m) and shelf edge (348-412 m). The processes driving the community structure of these depth zones were postulated to be tides, wave turbulence, seasonal hypoxia, habitat stability and homogeneity, and internal tides and/or shelf break upwelling, with drivers listed in order of increasing influence with depth. The middle shelf was further separated into three distinct communities based on sediment type, sediment organic carbon content and frequency of hypoxia. Variations in water turbulence, sediment grain size, upwelling-related variables and riverine sediment input were identified as the likely primary drivers of macro-infaunal community patterns. This chapter culminated in the development of a biotope classification based on the combination of macro-infaunal communities and their physical habitats (i.e. biotopes). South Africa has developed an expert-derived National Marine and Coastal Habitat (SANMC) Classification System which is used as a biodiversity surrogate in ecosystem assessment and spatial planning. This thesis tested the validity of this classification and the data derived Seascape classification against macro-infauna species abundance and biomass data in an effort to determine how well the different classifications represent macro-infaunal diversity of the west coast. These two classifications were also compared to the Biotope classification which combines macro-infaunal communities with their physical habitats. A canonical analysis of principle coordinates (CAP) was utilised to test the success with which each sample was allocated to the relevant habitat type in each classification. The total allocation success for each classification was used as a measure of effectiveness in terms of representing biodiversity patterns. Both classifications had similar allocation successes of 89-92 percent and 92-94 percent for the Seascape and National Habitat Classification respectively, but either over- or under-classified the macrofauna communities. The Biotope classification had the highest allocation success (98 percent), therefore it is the most accurate reflection of the macrofauna biodiversity patterns on the west coast. A key finding of this study was the increasing accuracy of classifications from physically- to expert- to biologically-derived habitat classifications. In this thesis, the Biotope classification was deemed the best representative of biodiversity patterns and was therefore used to produce the Biotope map for use in spatial assessment and planning. The distinct depth patterns that emerged in both the Seascape and Biotope classifications highlighted the need for further investigation of the relationship between depth and biodiversity. Despite variability in macro-infaunal communities, a general unifying pattern in biodiversity across the shelf was sought. Three relationships between depth and species richness have been described in the literature; namely a unimodal pattern, a positively linear relationship with depth, and no relationship between depth and species richness. These hypotheses were tested on the west coast. Two different species richness metrics were utilised to test the depth-diversity relationship, namely observed species density (spp.0.2m-2) and estimated species richness (spp.site-1). Observed species density increased from the beach to the shelf edge (350 m), then decreased to 412 m. The decline may have been due to difficulty in detecting species at greater depths as a result of sampling challenges. The inclusion of an innovative extrapolative method for estimating species richness (the capture-recapture heterogeneity model) within the Bayesian statistical framework mitigated the effects of species detection heterogeneity and revealed that species richness actually increased continuously across the shelf from beach to shelf edge. Thus the general relationship between depth and species richness is positively linear on the west coast of South Africa The new macro-infauna dataset and biotope map provided the opportunity to develop the first habitat-specific evidence-based conservation targets for unconsolidated sediments of the west coast. Species-Area Relationship (SAR) based conservation targets were developed for the biotopes using a modification of the generally accepted methodology. The accepted methodology has three steps (i) the estimation of total species richness for each habitat using the Bootstrap asymptotic estimator, (ii) the calculation of the slope of the species area curve (i.e. the z-value), and (iii) the calculation of targets representing 80 percent of the species. The inclusion of an innovative extrapolative species richness estimator, the Multi-species Site Occupancy Model (MSOM) provided better species richness estimation than the more conventional bootstrap species richness estimator, even though both are based on species accumulation. The MSOM, applied in the Bayesian statistical framework takes detectability of a species into account.
- Full Text:
- Date Issued: 2014
The impact of the slum upgrading approach on the livelihoods of scheme participants in Uganda : using the sustainable livelihoods framework
- Authors: Karungi, Doreen
- Date: 2020
- Subjects: Slums -- Public welfare -- Uganda
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/48412 , vital:40874
- Description: International and local agencies recommend implementing slum upgrading projects in slum areas for slum improvement. However, with no model or guiding principles provided to slum upgrading project implementers on how to upgrade a slum, slum clearance and redevelopment are implemented rather than slum upgrading consequently projects fail to benefit the target group, slum dwellers. Data collection, took place in five areas in Uganda that implemented slum upgrading. In depth interviews were held with project beneficiaries, local council officials and association executives, and government officials at the Ministry of Lands, Housing and Urban Development. Field observation, and document analysis was carried out. Data analysis involved the use of the sustainable livelihoods framework. This study demonstrates that the slum upgrading approach adopted in Uganda exhibited low sustainability and undercut the sustainability of livelihoods of scheme participants. Slum dwellers faced vulnerabilities from loss of land, characterized by rights based actions resulting in minimal to no compensation or eviction and loss of existing livelihoods. Slum upgrading projects introduced new livelihood opportunities that were too few for slum dwellers, were not sustainable and ended during or with project implementation, leaving beneficiaries without employment or income opportunities. Increased vulnerability was observed as slum dwellers that did not benefit from the project were displaced to worse conditions while slum dwellers that benefitted, project beneficiaries remained poor and in debt, with project loans to repay. Although project beneficiaries were provided with access to assets, they were unable to draw on these to build their livelihoods. Some beneficiaries sold plots and project houses allocated to them and moved to adjacent slums, where they lived in worse conditions. At the time of the current research, good quality houses in the slum upgrading areas did not belong to the original beneficiaries old dilapidated structures were occupied by project beneficiaries. This study shows that income earning activities carried out at the time of the study were similar to those carried out prior to the introduction of slum upgrading in project areas and were destroyed during project implementation or banned by implementers. These activities were however carried out in incomplete houses, vacant plots, temporary structures in project areas and in adjacent swamps and forest. Generally, after completion of slum upgrading projects, project areas, adjacent swamps and forest were characterized by haphazard developments including: rentals, informal businesses, farming, brewing and distilling local alcohol used by beneficiaries to derive livelihoods, in other words, slums were recreated, a problem slum upgrading project implementers set out to solve - except in one study area where the project was implemented differently as a result of persist rights based actions.
- Full Text:
- Date Issued: 2020
- Authors: Karungi, Doreen
- Date: 2020
- Subjects: Slums -- Public welfare -- Uganda
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/48412 , vital:40874
- Description: International and local agencies recommend implementing slum upgrading projects in slum areas for slum improvement. However, with no model or guiding principles provided to slum upgrading project implementers on how to upgrade a slum, slum clearance and redevelopment are implemented rather than slum upgrading consequently projects fail to benefit the target group, slum dwellers. Data collection, took place in five areas in Uganda that implemented slum upgrading. In depth interviews were held with project beneficiaries, local council officials and association executives, and government officials at the Ministry of Lands, Housing and Urban Development. Field observation, and document analysis was carried out. Data analysis involved the use of the sustainable livelihoods framework. This study demonstrates that the slum upgrading approach adopted in Uganda exhibited low sustainability and undercut the sustainability of livelihoods of scheme participants. Slum dwellers faced vulnerabilities from loss of land, characterized by rights based actions resulting in minimal to no compensation or eviction and loss of existing livelihoods. Slum upgrading projects introduced new livelihood opportunities that were too few for slum dwellers, were not sustainable and ended during or with project implementation, leaving beneficiaries without employment or income opportunities. Increased vulnerability was observed as slum dwellers that did not benefit from the project were displaced to worse conditions while slum dwellers that benefitted, project beneficiaries remained poor and in debt, with project loans to repay. Although project beneficiaries were provided with access to assets, they were unable to draw on these to build their livelihoods. Some beneficiaries sold plots and project houses allocated to them and moved to adjacent slums, where they lived in worse conditions. At the time of the current research, good quality houses in the slum upgrading areas did not belong to the original beneficiaries old dilapidated structures were occupied by project beneficiaries. This study shows that income earning activities carried out at the time of the study were similar to those carried out prior to the introduction of slum upgrading in project areas and were destroyed during project implementation or banned by implementers. These activities were however carried out in incomplete houses, vacant plots, temporary structures in project areas and in adjacent swamps and forest. Generally, after completion of slum upgrading projects, project areas, adjacent swamps and forest were characterized by haphazard developments including: rentals, informal businesses, farming, brewing and distilling local alcohol used by beneficiaries to derive livelihoods, in other words, slums were recreated, a problem slum upgrading project implementers set out to solve - except in one study area where the project was implemented differently as a result of persist rights based actions.
- Full Text:
- Date Issued: 2020
Development of a bulbine frutescens and carpobrotus edulis cream in collaboration with african traditional healers of the Nelson Mandela Metropole
- Authors: Keele, Mbali Zamathiyane
- Date: 2014
- Subjects: Drug development -- South Africa -- Port Elizabeth , Healers -- South Africa -- Port Elizabeth , Traditional medicine -- South Africa -- Port Elizabeth , Physicians -- Health -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10358 , http://hdl.handle.net/10948/d1021016
- Description: Collaborations between researchers and African traditional healers on medicinal plants need to go beyond the flow of information from African traditional healers to researchers. Mutual beneficiation wherein African traditional healers reap rewards due to the information they possess is necessary and has been legislated in South Africa. The manner in which such beneficiation occurs and how it will be distributed should be subject to negotiation between (a) the researchers and holders of indigenous knowledge and (b) among holders of indigenous knowledge themselves. Beneficiation can be in the form of access to information, monetary or through shares in commercialised products, amongst others. African traditional healers involved in the collaboration with researchers of the Department of Biochemistry and Microbiology and the Department of Pharmacy at the Nelson Mandela Metropolitan University beneficiated by having access to knowledge and medicinal plants cultivated in the medicinal garden. Beneficiation was expected to extend to monetary gains from the sale of sewn garments and plants from a medicinal plants nursery which was to be developed and from a herbal topical product which was also to be developed. The aim of this research project was to develop a wound healing herbal cream consisting of Bulbine frutescens and Carpobrotus edulis as active ingredients. B. frutescens demonstrated better wound closure properties when compared to C. edulis and the combined extracts. The scratch assay wound was completely closed after 24 hours at B. frutescens concentrations of 5 μg/ml and 10 μg/ml. B. frutescens was more toxic to 3t3-L1 cells than C. edulis, but it was less toxic than the combined extracts. None of the extracts were toxic to Vero cells and the combined extracts significantly promoted their proliferation. Antibacterial activity of all the extracts was low. C. edulis showed antiviral activity against human herpes simplex virus 1 at 62.5, 125 and 250 μg/ml, while the combined extracts were active at 250 μg/ml. The combined extracts exhibited synergistic antioxidant activity. A reverse phase, gradient, high performance liquid chromatography method was developed and validated and used to conduct quality control tests on the extracts and the finished product. It was concluded that the use of whole chromatographic data instead of common peaks data is best for analysis of medicinal plants. The cream that was developed used buffered cream as the base and was stable at 25 °C/65 percent RH for one month with regard to organoleptic and rheological properties and microbial preservation.
- Full Text:
- Date Issued: 2014
- Authors: Keele, Mbali Zamathiyane
- Date: 2014
- Subjects: Drug development -- South Africa -- Port Elizabeth , Healers -- South Africa -- Port Elizabeth , Traditional medicine -- South Africa -- Port Elizabeth , Physicians -- Health -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10358 , http://hdl.handle.net/10948/d1021016
- Description: Collaborations between researchers and African traditional healers on medicinal plants need to go beyond the flow of information from African traditional healers to researchers. Mutual beneficiation wherein African traditional healers reap rewards due to the information they possess is necessary and has been legislated in South Africa. The manner in which such beneficiation occurs and how it will be distributed should be subject to negotiation between (a) the researchers and holders of indigenous knowledge and (b) among holders of indigenous knowledge themselves. Beneficiation can be in the form of access to information, monetary or through shares in commercialised products, amongst others. African traditional healers involved in the collaboration with researchers of the Department of Biochemistry and Microbiology and the Department of Pharmacy at the Nelson Mandela Metropolitan University beneficiated by having access to knowledge and medicinal plants cultivated in the medicinal garden. Beneficiation was expected to extend to monetary gains from the sale of sewn garments and plants from a medicinal plants nursery which was to be developed and from a herbal topical product which was also to be developed. The aim of this research project was to develop a wound healing herbal cream consisting of Bulbine frutescens and Carpobrotus edulis as active ingredients. B. frutescens demonstrated better wound closure properties when compared to C. edulis and the combined extracts. The scratch assay wound was completely closed after 24 hours at B. frutescens concentrations of 5 μg/ml and 10 μg/ml. B. frutescens was more toxic to 3t3-L1 cells than C. edulis, but it was less toxic than the combined extracts. None of the extracts were toxic to Vero cells and the combined extracts significantly promoted their proliferation. Antibacterial activity of all the extracts was low. C. edulis showed antiviral activity against human herpes simplex virus 1 at 62.5, 125 and 250 μg/ml, while the combined extracts were active at 250 μg/ml. The combined extracts exhibited synergistic antioxidant activity. A reverse phase, gradient, high performance liquid chromatography method was developed and validated and used to conduct quality control tests on the extracts and the finished product. It was concluded that the use of whole chromatographic data instead of common peaks data is best for analysis of medicinal plants. The cream that was developed used buffered cream as the base and was stable at 25 °C/65 percent RH for one month with regard to organoleptic and rheological properties and microbial preservation.
- Full Text:
- Date Issued: 2014
Towards knowing through doing : improving the societal relevance of systematic conservation assessments
- Authors: Knight, Andrew Thomas
- Date: 2007
- Subjects: Conservation of natural resources -- Planning , Nature conservation -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10598 , http://hdl.handle.net/10948/711 , Conservation of natural resources -- Planning , Nature conservation -- South Africa
- Description: Systematic conservation assessments are spatially-explicit techniques for prioritising areas for the implementation of conservation action. There has been considerable reference in the peer-reviewed literature as to the usefulness of these tools, which appear to be primarily used by academics for theoretical research. A literature review and author survey reveals the peer-reviewed literature is largely theoretical, although conservation action results more frequently than reported. The effectiveness of these interventions is generally described as only ‘fairly effective’. This general trend, coupled with previous personal failures in translating systematic conservation assessments into effective conservation action triggered an explicit process of social learning implemented as action research. It examined the workings of the Subtropical Thicket Ecosystem Planning (STEP) project, which included development of a systematic conservation assessment. Systematic conservations assessments simply provide information on where action should be implemented, and so are only useful if situated within broader operational models for conservation planning. Most operational models presented in the peer-reviewed literature are primarily focused upon the testing ecological data, not upon the delivery of conservation action. A new operational model for conservation planning is presented which more accurately reflects the ‘real-world’ process of conservation planning. An implementation strategy is an essential complement to a systematic conservation assessment. It describes how specific, explicitly-stated goals will be achieved, who is accountable for undertaking these activities, and the resources required. As the Implementation Specialist for the STEP Project, I co-lead the collaborative development of an implementation strategy with stakeholders that aimed to mobilise resources towards achieving common goals. Whilst the development and initial uptake of the strategy was good, subsequent implementation has flounder. The reasons for this are explored. The ultimate pragmatic goal of a conservation planning process is the establishment of effective social learning institutions. These develop common visions, mobilise collective action, and adaptively learn and refine their conservation activities. Thicket Forum is one xi such institution established through the STEP Project. My involvement with Thicket Forum since 2004 in implementing an adaptive learning approach facilitates collaboration between land managers, government and research organisations. Systematic conservation assessments evolved in response to the ad hoc way in which protected areas were implemented, leaving unrepresentative, biased protected area networks. Most research is theoretical and without an intimate understanding of the social-ecological system of a planning region, notably opportunities and constraints for implementing conservation action. Highlighting the importance of an approach which is flexible, not only in space, but in time, which can capitalise upon implementation opportunities, is important for stemming the myth that opportunism is the nemesis of systematic conservation assessments. To this end, conservation planners have been slow to include factors influencing effective implementation in systematic conservation assessments. Many studies which identify candidate protected area networks, first, fail to identify the specific instrument(s) to be applied, and second, assume all intact land is available. Having mapped the willingness of land managers in the Albany District, South Africa, to sell their land, it is demonstrated the majority of targets fail to be achieved because land managers will not sell. Knowing this, the current focus of gathering ever-more ecological data is misplaced. Human, social and economic factors influence target achievement, efficiency and spatial configuration of priority areas. Selecting important areas for conservation, particularly at the local-scale, requires the mapping of factors which define opportunities for conservation. Land manager willingness to collaborate and participate, entrepreneurial orientation, conservation knowledge, social capital, and local champions were applied using a method of hierarchical clustering to identify land managers who represent conservation opportunities for private land conservation initiatives.
- Full Text:
- Date Issued: 2007
- Authors: Knight, Andrew Thomas
- Date: 2007
- Subjects: Conservation of natural resources -- Planning , Nature conservation -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10598 , http://hdl.handle.net/10948/711 , Conservation of natural resources -- Planning , Nature conservation -- South Africa
- Description: Systematic conservation assessments are spatially-explicit techniques for prioritising areas for the implementation of conservation action. There has been considerable reference in the peer-reviewed literature as to the usefulness of these tools, which appear to be primarily used by academics for theoretical research. A literature review and author survey reveals the peer-reviewed literature is largely theoretical, although conservation action results more frequently than reported. The effectiveness of these interventions is generally described as only ‘fairly effective’. This general trend, coupled with previous personal failures in translating systematic conservation assessments into effective conservation action triggered an explicit process of social learning implemented as action research. It examined the workings of the Subtropical Thicket Ecosystem Planning (STEP) project, which included development of a systematic conservation assessment. Systematic conservations assessments simply provide information on where action should be implemented, and so are only useful if situated within broader operational models for conservation planning. Most operational models presented in the peer-reviewed literature are primarily focused upon the testing ecological data, not upon the delivery of conservation action. A new operational model for conservation planning is presented which more accurately reflects the ‘real-world’ process of conservation planning. An implementation strategy is an essential complement to a systematic conservation assessment. It describes how specific, explicitly-stated goals will be achieved, who is accountable for undertaking these activities, and the resources required. As the Implementation Specialist for the STEP Project, I co-lead the collaborative development of an implementation strategy with stakeholders that aimed to mobilise resources towards achieving common goals. Whilst the development and initial uptake of the strategy was good, subsequent implementation has flounder. The reasons for this are explored. The ultimate pragmatic goal of a conservation planning process is the establishment of effective social learning institutions. These develop common visions, mobilise collective action, and adaptively learn and refine their conservation activities. Thicket Forum is one xi such institution established through the STEP Project. My involvement with Thicket Forum since 2004 in implementing an adaptive learning approach facilitates collaboration between land managers, government and research organisations. Systematic conservation assessments evolved in response to the ad hoc way in which protected areas were implemented, leaving unrepresentative, biased protected area networks. Most research is theoretical and without an intimate understanding of the social-ecological system of a planning region, notably opportunities and constraints for implementing conservation action. Highlighting the importance of an approach which is flexible, not only in space, but in time, which can capitalise upon implementation opportunities, is important for stemming the myth that opportunism is the nemesis of systematic conservation assessments. To this end, conservation planners have been slow to include factors influencing effective implementation in systematic conservation assessments. Many studies which identify candidate protected area networks, first, fail to identify the specific instrument(s) to be applied, and second, assume all intact land is available. Having mapped the willingness of land managers in the Albany District, South Africa, to sell their land, it is demonstrated the majority of targets fail to be achieved because land managers will not sell. Knowing this, the current focus of gathering ever-more ecological data is misplaced. Human, social and economic factors influence target achievement, efficiency and spatial configuration of priority areas. Selecting important areas for conservation, particularly at the local-scale, requires the mapping of factors which define opportunities for conservation. Land manager willingness to collaborate and participate, entrepreneurial orientation, conservation knowledge, social capital, and local champions were applied using a method of hierarchical clustering to identify land managers who represent conservation opportunities for private land conservation initiatives.
- Full Text:
- Date Issued: 2007
An evaluation of programming assistance tools to support the learning of IT programming: a case study in South African secondary schools
- Authors: Koorsse, Melisa
- Date: 2012
- Subjects: Computer science , Computer literacy , Computer programming
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10472 , http://hdl.handle.net/10948/d1010581 , Computer science , Computer literacy , Computer programming
- Description: Worldwide, there is a decline in interest in the computer science profession and in the subject at secondary school level. Novice programmers struggle to understand introductory programming concepts and this difficulty of learning to program is contributing to the lack of interest in the field of computer science. Information Technology (IT) learners in South African secondary schools are novice programmers, introduced to introductory programming concepts in the subject which also includes topics on hardware and system software, e-communication, social and ethical issues, spreadsheets and databases. The difficulties faced by IT learners are worsened by the lack of suitably qualified teachers, a saturated learning programme that allocates very little time to the understanding of complex programming concepts and limited class time where practical examples can be implemented with the support of the IT teacher. This research proposes that IT learners could be supported by a programming assistance tool (PAT). A PAT is a software program that can be used by novice programmers to learn how to program and/or improve their understanding of programming concepts. PATs use different techniques to assist novice programmers. The main objective of this research was to determine whether the use of a PAT impacted IT learners’ understanding of programming concepts and motivation towards programming. The literature study and feedback from IT learners and teachers were used to identify novice programming difficulties and IT learner programming difficulties, respectively. Selection criteria were derived from the programming difficulties identified. The selection criteria were grouped into three categories, namely, programming concepts, programming knowledge and programming skills. Existing PATs were evaluated using the selection criteria and three PATs, namely, RoboMind, Scratch and B#, were selected as suitable for use by IT learners. RoboMind was adapted in this research study, allowing it to support the Delphi programming language. The three PATs were evaluated by participating IT learners at four schools. The findings of this research provided no conclusive evidence that IT learners who used a PAT had a significantly better understanding of programming concepts and motivation towards programming than learners who did not use a PAT. IT learner feedback was used to identify the strengths and shortcomings of the three PATs and to provide recommendations for the development of PATs specifically to support IT learners. This research study has provided several theoretical and practical contributions, including the research design, selection criteria, adaptations to RoboMind and the evaluation of the three PATs. In addition, IT teachers and learners have been made aware of PATs and the support that can be provided by these PATs. IT teachers have also been provided with a means of selecting PATs applicable to the IT curriculum. All the research contributions have formed the basis for future work, such as improving and extending RoboMind’s functionality and support of programming concepts, the refinement of the selection criteria and, ultimately, the development of a new PAT, specifically designed to support IT learner understanding of programming concepts and motivation towards programming.
- Full Text:
- Date Issued: 2012
- Authors: Koorsse, Melisa
- Date: 2012
- Subjects: Computer science , Computer literacy , Computer programming
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10472 , http://hdl.handle.net/10948/d1010581 , Computer science , Computer literacy , Computer programming
- Description: Worldwide, there is a decline in interest in the computer science profession and in the subject at secondary school level. Novice programmers struggle to understand introductory programming concepts and this difficulty of learning to program is contributing to the lack of interest in the field of computer science. Information Technology (IT) learners in South African secondary schools are novice programmers, introduced to introductory programming concepts in the subject which also includes topics on hardware and system software, e-communication, social and ethical issues, spreadsheets and databases. The difficulties faced by IT learners are worsened by the lack of suitably qualified teachers, a saturated learning programme that allocates very little time to the understanding of complex programming concepts and limited class time where practical examples can be implemented with the support of the IT teacher. This research proposes that IT learners could be supported by a programming assistance tool (PAT). A PAT is a software program that can be used by novice programmers to learn how to program and/or improve their understanding of programming concepts. PATs use different techniques to assist novice programmers. The main objective of this research was to determine whether the use of a PAT impacted IT learners’ understanding of programming concepts and motivation towards programming. The literature study and feedback from IT learners and teachers were used to identify novice programming difficulties and IT learner programming difficulties, respectively. Selection criteria were derived from the programming difficulties identified. The selection criteria were grouped into three categories, namely, programming concepts, programming knowledge and programming skills. Existing PATs were evaluated using the selection criteria and three PATs, namely, RoboMind, Scratch and B#, were selected as suitable for use by IT learners. RoboMind was adapted in this research study, allowing it to support the Delphi programming language. The three PATs were evaluated by participating IT learners at four schools. The findings of this research provided no conclusive evidence that IT learners who used a PAT had a significantly better understanding of programming concepts and motivation towards programming than learners who did not use a PAT. IT learner feedback was used to identify the strengths and shortcomings of the three PATs and to provide recommendations for the development of PATs specifically to support IT learners. This research study has provided several theoretical and practical contributions, including the research design, selection criteria, adaptations to RoboMind and the evaluation of the three PATs. In addition, IT teachers and learners have been made aware of PATs and the support that can be provided by these PATs. IT teachers have also been provided with a means of selecting PATs applicable to the IT curriculum. All the research contributions have formed the basis for future work, such as improving and extending RoboMind’s functionality and support of programming concepts, the refinement of the selection criteria and, ultimately, the development of a new PAT, specifically designed to support IT learner understanding of programming concepts and motivation towards programming.
- Full Text:
- Date Issued: 2012
Fire regimes in eastern coastal fynbos: drivers, ecology and management
- Authors: Kraaij, Tineke
- Date: 2012
- Subjects: Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10607 , http://hdl.handle.net/10948/d1008047 , Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Description: Conventional knowledge of fynbos fire ecology is based on the summer-autumn fire regimes of the western Cape Floral Kingdom (CFK) where the climate is Mediterranean. However, the climate in the eastern coastal-CFK is milder and rainfall occurs year-round, with presumed effects on fire regimes. The Garden Route National Park (GRNP) has recently been established in the region, in a landscape where indigenous forests, fire-prone fynbos shrublands and fire-sensitive plantations of invasive alien trees are interspersed. The park faces considerable challenges related to the management of fire, including significant pressure from the adjacent plantation industry to reduce wildfire hazard by burning fynbos at short intervals, and high levels of invasion by alien trees (largely Pinus species originating from plantations). This study sought to improve understanding of fire regimes in eastern coastal fynbos shrublands, and to provide guidelines for ecologically sound management of fire in the area. My approach entailed (i) an assessment of the context within which fire management was practiced during the past century; (ii) characterisation of the recent fire history and fire regime (1900–2010); (iii) characterisation of the seasonality of fire weather and lightning; (iv) estimation of minimum fire return intervals (FRIs) from juvenile periods and post-fire recruitment success of overstorey proteoids (non-sprouting, slow-maturing, serotinous Proteaceae); and (v) determination of the ecologically appropriate fire season from post-fire recruitment seasonality of proteoids. I established that historically, plantation protection enjoyed priority over fynbos conservation in the area that is now the GRNP. Fynbos close to plantations has most likely been compromised by frequent and low-intensity burning in the past, as well as by invasion by alien trees. In terms of area burnt (1900–2010), natural (lightning-ignited) fires dominated the fire regime, particularly in the east, whereas prescribed burning was relatively unimportant. Typical fire return intervals (FRIs; 8–26 years; 1980–2010) were comparable to those in other fynbos protected areas and appeared to be shorter in the eastern Tsitsikamma than in the western Outeniqua halves of the study area. Proteaceae juvenile periods (4–9 years) and post-fire recruitment success (following fires in ≥7 year-old vegetation) suggested that for biodiversity conservation purposes, FRIs should be no less than nine years in moist, productive fynbos. Increases in the total area burnt annually (since 1980) were correlated with long-term increases in average fire danger weather, suggesting that fire regime changes may be related to global change. Collectively, findings on the seasonality of actual fires and the seasonality of fire danger weather, lightning, and post-fire proteoid recruitment suggested that fires in eastern coastal fynbos are not limited to any particular season, and for this reason managers do not need to be concerned if fires occur in any season. The ecological requirements for higher fire intensity may nonetheless be constrained by a need for safety. I articulated these findings into ecological thresholds pertaining to the different elements of the fire regime in eastern coastal fynbos, to guide adaptive management of fire in the Garden Route National Park. I also recommended a fire management strategy for the park to address the aforementioned operational considerations within the constraints posed by ecological thresholds. Finally, I highlighted further research and monitoring needs.
- Full Text:
- Date Issued: 2012
- Authors: Kraaij, Tineke
- Date: 2012
- Subjects: Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10607 , http://hdl.handle.net/10948/d1008047 , Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Description: Conventional knowledge of fynbos fire ecology is based on the summer-autumn fire regimes of the western Cape Floral Kingdom (CFK) where the climate is Mediterranean. However, the climate in the eastern coastal-CFK is milder and rainfall occurs year-round, with presumed effects on fire regimes. The Garden Route National Park (GRNP) has recently been established in the region, in a landscape where indigenous forests, fire-prone fynbos shrublands and fire-sensitive plantations of invasive alien trees are interspersed. The park faces considerable challenges related to the management of fire, including significant pressure from the adjacent plantation industry to reduce wildfire hazard by burning fynbos at short intervals, and high levels of invasion by alien trees (largely Pinus species originating from plantations). This study sought to improve understanding of fire regimes in eastern coastal fynbos shrublands, and to provide guidelines for ecologically sound management of fire in the area. My approach entailed (i) an assessment of the context within which fire management was practiced during the past century; (ii) characterisation of the recent fire history and fire regime (1900–2010); (iii) characterisation of the seasonality of fire weather and lightning; (iv) estimation of minimum fire return intervals (FRIs) from juvenile periods and post-fire recruitment success of overstorey proteoids (non-sprouting, slow-maturing, serotinous Proteaceae); and (v) determination of the ecologically appropriate fire season from post-fire recruitment seasonality of proteoids. I established that historically, plantation protection enjoyed priority over fynbos conservation in the area that is now the GRNP. Fynbos close to plantations has most likely been compromised by frequent and low-intensity burning in the past, as well as by invasion by alien trees. In terms of area burnt (1900–2010), natural (lightning-ignited) fires dominated the fire regime, particularly in the east, whereas prescribed burning was relatively unimportant. Typical fire return intervals (FRIs; 8–26 years; 1980–2010) were comparable to those in other fynbos protected areas and appeared to be shorter in the eastern Tsitsikamma than in the western Outeniqua halves of the study area. Proteaceae juvenile periods (4–9 years) and post-fire recruitment success (following fires in ≥7 year-old vegetation) suggested that for biodiversity conservation purposes, FRIs should be no less than nine years in moist, productive fynbos. Increases in the total area burnt annually (since 1980) were correlated with long-term increases in average fire danger weather, suggesting that fire regime changes may be related to global change. Collectively, findings on the seasonality of actual fires and the seasonality of fire danger weather, lightning, and post-fire proteoid recruitment suggested that fires in eastern coastal fynbos are not limited to any particular season, and for this reason managers do not need to be concerned if fires occur in any season. The ecological requirements for higher fire intensity may nonetheless be constrained by a need for safety. I articulated these findings into ecological thresholds pertaining to the different elements of the fire regime in eastern coastal fynbos, to guide adaptive management of fire in the Garden Route National Park. I also recommended a fire management strategy for the park to address the aforementioned operational considerations within the constraints posed by ecological thresholds. Finally, I highlighted further research and monitoring needs.
- Full Text:
- Date Issued: 2012
Isolation, purification and partial characterisation of cancer procoagulant from placental amnion-chorion membranes and its role in angiogenesis inflammation and metastasis
- Authors: Krause, Jason
- Date: 2014
- Subjects: Coagulation , Amnion , Chorion , Metastasis , Inflammation , Neovascularization
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10350 , http://hdl.handle.net/10948/d1020897
- Description: Cancer procoagulant (EC 3.4.22.26) is an enzyme that is derived from tumour and foetal tissue, but not normal tissue. It is a direct activator of factor X and has been isolated from amnion-chorion membranes as well as from extracts and cells from human melanoma. The presence of cancer procoagulant has been associated with the malignant phenotype, as well as having a particularly high activity in metastatic cells. Cancer procoagulant activity is elevated in the serum of early stage breast cancer patients and decreased to normal in the advanced stages of the disease. In this study, cancer procoagulant was successfully isolated from amnion-chorion membranes and purified to homogeneity. The molecular weight of cancer procoagulant was determined using SDS-PAGE and was found to be 68 kDa. Cancer procoagulant was delipidated and it was shown that its activity was increased by the presence of lipids in a dose-dependent manner. Recovery of cancer procoagulant after delipidation is poor, consequently, a larger mass of sample is required to obtain sufficient amounts of delipidated material for N-terminal amino acid analysis. The optimum pH of cancer procoagulant was determined to be pH 8 and its optimal temperature was found to be 50°C. Novel synthetic substrates were designed to assay for cancer procoagulant activity. Currently, 2 potential candidates have been identified, namely, PQVR-AMC and AVSQSKP-AMC. Cancer procoagulant-induced expression of cytokines is differently modulated in the less aggressive MCF-7 cell line as compared to the metastatic and more aggressive MDA-MB-231 cell line. There are marked similarities in the inflammatory response produced by cancer procoagulant in hTERT-HDLEC and MDA-MB-231 cells, which are both associated with migratory capacity. Furthermore, cancer procoagulant-induced PDGF-β expression in hTERT-HDLEC and MDA-MB-231 cells could point to involvement of cancer procoagulant in wound healing and metastatic spread, respectively. Cancer procoagulant induced the motility of MDA-MB-231, MCF-7 and hTERT- cells in vitro in a time- and dose-dependent manner. Together, these results suggest that cancer procoagulant plays a role in the migration of breast cancer cells as well as the migration of endothelial cells.
- Full Text:
- Date Issued: 2014
- Authors: Krause, Jason
- Date: 2014
- Subjects: Coagulation , Amnion , Chorion , Metastasis , Inflammation , Neovascularization
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10350 , http://hdl.handle.net/10948/d1020897
- Description: Cancer procoagulant (EC 3.4.22.26) is an enzyme that is derived from tumour and foetal tissue, but not normal tissue. It is a direct activator of factor X and has been isolated from amnion-chorion membranes as well as from extracts and cells from human melanoma. The presence of cancer procoagulant has been associated with the malignant phenotype, as well as having a particularly high activity in metastatic cells. Cancer procoagulant activity is elevated in the serum of early stage breast cancer patients and decreased to normal in the advanced stages of the disease. In this study, cancer procoagulant was successfully isolated from amnion-chorion membranes and purified to homogeneity. The molecular weight of cancer procoagulant was determined using SDS-PAGE and was found to be 68 kDa. Cancer procoagulant was delipidated and it was shown that its activity was increased by the presence of lipids in a dose-dependent manner. Recovery of cancer procoagulant after delipidation is poor, consequently, a larger mass of sample is required to obtain sufficient amounts of delipidated material for N-terminal amino acid analysis. The optimum pH of cancer procoagulant was determined to be pH 8 and its optimal temperature was found to be 50°C. Novel synthetic substrates were designed to assay for cancer procoagulant activity. Currently, 2 potential candidates have been identified, namely, PQVR-AMC and AVSQSKP-AMC. Cancer procoagulant-induced expression of cytokines is differently modulated in the less aggressive MCF-7 cell line as compared to the metastatic and more aggressive MDA-MB-231 cell line. There are marked similarities in the inflammatory response produced by cancer procoagulant in hTERT-HDLEC and MDA-MB-231 cells, which are both associated with migratory capacity. Furthermore, cancer procoagulant-induced PDGF-β expression in hTERT-HDLEC and MDA-MB-231 cells could point to involvement of cancer procoagulant in wound healing and metastatic spread, respectively. Cancer procoagulant induced the motility of MDA-MB-231, MCF-7 and hTERT- cells in vitro in a time- and dose-dependent manner. Together, these results suggest that cancer procoagulant plays a role in the migration of breast cancer cells as well as the migration of endothelial cells.
- Full Text:
- Date Issued: 2014
On the characterisation of solar cells using light beam induced current measurements
- Authors: Kwarikunda, Nicholas
- Date: 2015
- Subjects: Solor cells Spectrum, Solar
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11147 , vital:26889
- Description: The presence of inhomogeneities in semiconductor materials used to fabricate solar cell devices may result in spatial non uniformities in the device properties which may affect current generation in these devices. Besides, current reducing defects such as inclusions, local shunts and optical blockages may be introduced during the various device manufacturing processes which may adversely affect the performance and overall efficiency of solar cells. Diagnostic techniques are therefore needed to identify these defects so as to improve the production technology. This thesis presents the Light Beam Induced Current (LBIC) technique for mapping spatial non uniformities in solar cell devices. The LBIC is a non destructive characterisation technique that uses a focused light beam to raster scan a solar cell surface as the photo-generated current is recorded as a function of position to generate a photo-response map. The technique was used to obtain photoresponse maps for a mc-Si, Back contact Back junction (BC-BJ) silicon solar cell and the InGaP/InGaAs/Ge concentrating triple junction (CTJ) solar cell from which various local current reducing defects were mapped. A reflection signal detector was incorporated into the LBIC measurement system to enable us distinguish between optical blockages on the cell surface and current reducing defects within the solar cell devices. By dynamically biasing the solar cell devices, the electrical activity of the identified defects was investigated and also point-by-point current-voltage (I-V) characteristics were obtained. An interval division algorithm was applied to the measured point-by-point I-V characteristics to extract device and performance parameters from which device and performance parameter uniformity of the devices were mapped. Dark and full cell solar illumination I-V characteristics were also measured to extract device parameters. Analysis of extracted parameters revealed differences between extracted dark and illuminated device parameters which was attributed to departure from the superposition principle due to non-linearity of the semiconductor device equations with respect to carrier concentration. An investigation into the effect of illumination intensity on the I-V parameters of a spot illuminated BC-BJ Si solar cell showed a linear increase and a logarithmic increase of the short circuit current and open circuit voltage respectively with intensity while the series resistance decreased with intensity, which was attributed to increase in conductivity of the active layer. The ideality factor and saturation current were observed to increase while the shunt resistance initially increased before decreasing at higher intensity levels. Under monochromatic illumination, the photo-response of the BC-BJ Si cell was higher at 785nm than at 445nm due to low absorption coefficient of Si for longer wavelength radiations, resulting in carrier generation within the bulk, where there is a higher probability of carriers being collected at the p-n junction before they recombine. Under solar illumination, as the spectral content was altered using long pass colour filters with cut off wavelengths of 610nm and 1000nm, the performance parameters were observed to decrease and this was mainly due to decrease in intensity. For the CTJ solar cell, however, blocking of radiations below 610nm resulted in current mismatch that severely degraded the short circuit current (Isc). The current mismatch affected the extracted device and performance parameters. With a 1000nm long pass filter, a dark I-V was obtained since only the bottom Ge subcell was activated.
- Full Text:
- Date Issued: 2015
- Authors: Kwarikunda, Nicholas
- Date: 2015
- Subjects: Solor cells Spectrum, Solar
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11147 , vital:26889
- Description: The presence of inhomogeneities in semiconductor materials used to fabricate solar cell devices may result in spatial non uniformities in the device properties which may affect current generation in these devices. Besides, current reducing defects such as inclusions, local shunts and optical blockages may be introduced during the various device manufacturing processes which may adversely affect the performance and overall efficiency of solar cells. Diagnostic techniques are therefore needed to identify these defects so as to improve the production technology. This thesis presents the Light Beam Induced Current (LBIC) technique for mapping spatial non uniformities in solar cell devices. The LBIC is a non destructive characterisation technique that uses a focused light beam to raster scan a solar cell surface as the photo-generated current is recorded as a function of position to generate a photo-response map. The technique was used to obtain photoresponse maps for a mc-Si, Back contact Back junction (BC-BJ) silicon solar cell and the InGaP/InGaAs/Ge concentrating triple junction (CTJ) solar cell from which various local current reducing defects were mapped. A reflection signal detector was incorporated into the LBIC measurement system to enable us distinguish between optical blockages on the cell surface and current reducing defects within the solar cell devices. By dynamically biasing the solar cell devices, the electrical activity of the identified defects was investigated and also point-by-point current-voltage (I-V) characteristics were obtained. An interval division algorithm was applied to the measured point-by-point I-V characteristics to extract device and performance parameters from which device and performance parameter uniformity of the devices were mapped. Dark and full cell solar illumination I-V characteristics were also measured to extract device parameters. Analysis of extracted parameters revealed differences between extracted dark and illuminated device parameters which was attributed to departure from the superposition principle due to non-linearity of the semiconductor device equations with respect to carrier concentration. An investigation into the effect of illumination intensity on the I-V parameters of a spot illuminated BC-BJ Si solar cell showed a linear increase and a logarithmic increase of the short circuit current and open circuit voltage respectively with intensity while the series resistance decreased with intensity, which was attributed to increase in conductivity of the active layer. The ideality factor and saturation current were observed to increase while the shunt resistance initially increased before decreasing at higher intensity levels. Under monochromatic illumination, the photo-response of the BC-BJ Si cell was higher at 785nm than at 445nm due to low absorption coefficient of Si for longer wavelength radiations, resulting in carrier generation within the bulk, where there is a higher probability of carriers being collected at the p-n junction before they recombine. Under solar illumination, as the spectral content was altered using long pass colour filters with cut off wavelengths of 610nm and 1000nm, the performance parameters were observed to decrease and this was mainly due to decrease in intensity. For the CTJ solar cell, however, blocking of radiations below 610nm resulted in current mismatch that severely degraded the short circuit current (Isc). The current mismatch affected the extracted device and performance parameters. With a 1000nm long pass filter, a dark I-V was obtained since only the bottom Ge subcell was activated.
- Full Text:
- Date Issued: 2015
Investigation of potential induced degradation as a performance limiting defect in photovoltaic modules
- Authors: Kwembur, Isaac Morko
- Date: 2020
- Subjects: Photovoltaic cells
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/48423 , vital:40875
- Description: Potential Induced Degradation (PID) impacts negatively on photovoltaic (PV) module durability because it significantly affects the output of PV modules and systems. Unless detected at infancy, PID progression can be catastrophic. This study involved systematic PID stressing of PV modules using a custom-built environmental chamber that can achieve suitable environmental conditions, viz., of the 35 °C ± 1 °C and relative humidity of 75 % ± 5 %. The first part of this work was to induce PID using three approaches: climate chamber testing, inducing PID using a conductive aluminium plate on the surface of the module without touching the frame and a localised PID induction on one cell in a module. The second part is to detect induced PID using Electroluminescence (EL) images taken at current corresponding to 10% Isc, EL histograms analysis and Voc ratio taken at 1000 W/m2 to 200 W/m2 . The third part is to study module regeneration after PID shunting degradation in two ways, viz., forced reverse polarization and natural recovery. The PID detection tools used in this work are well known module characterization techniques such as EL imaging, Infrared imaging, and light and dark current-voltage measurements. These characterisation tools are used in combination to detect defects such as optical losses, cracks, breakage, electric circuit degradation and PID. Under normal testing PID was detected and in some cases, modules were able to recover, while for advanced stage PID regeneration or PID reversal was difficult. This thesis focuses on PID detection at infancy using three approaches; EL imaging at current corresponding to 10% of Isc. Light and dark current – voltage measurements (L-IV & D-IV) and open circuit voltage (Voc) ratios at low irradiance. The early detection procedures are essential in reversing the degradation caused by PID which is reversible. The time taken to reverse the PID degradation will depend on the extent of the degradation. If detected early, it will take a short period of time to completely reverse lost power. Infrared thermography is a non-contact characteristic tool that can be deployed in large scale plants using drones to detect the presence of PID in PV plants. Module performance and device parameters extracted from the L-IV curves on a module before and after PID stress, such as Pmpp, Voc, Isc Fill Factor (FF), shunt resistance (Rsh) and series resistance (Rs) and ideality (n) are sensitive to PID shunting. Voc and Rsh drop significantly with the onset of PID, while Rs increases. The decrease in Voc and Rsh is due to heavy shunting on the module resulting in increased carrier recombination, while the increase in Rs is due to increased shunting paths leading to decreased photocurrent. When substantial degradation on a module occurs Pmpp, FF and n will drop and at very advanced stage of PID degradation Isc may drop excessively.
- Full Text:
- Date Issued: 2020
- Authors: Kwembur, Isaac Morko
- Date: 2020
- Subjects: Photovoltaic cells
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/48423 , vital:40875
- Description: Potential Induced Degradation (PID) impacts negatively on photovoltaic (PV) module durability because it significantly affects the output of PV modules and systems. Unless detected at infancy, PID progression can be catastrophic. This study involved systematic PID stressing of PV modules using a custom-built environmental chamber that can achieve suitable environmental conditions, viz., of the 35 °C ± 1 °C and relative humidity of 75 % ± 5 %. The first part of this work was to induce PID using three approaches: climate chamber testing, inducing PID using a conductive aluminium plate on the surface of the module without touching the frame and a localised PID induction on one cell in a module. The second part is to detect induced PID using Electroluminescence (EL) images taken at current corresponding to 10% Isc, EL histograms analysis and Voc ratio taken at 1000 W/m2 to 200 W/m2 . The third part is to study module regeneration after PID shunting degradation in two ways, viz., forced reverse polarization and natural recovery. The PID detection tools used in this work are well known module characterization techniques such as EL imaging, Infrared imaging, and light and dark current-voltage measurements. These characterisation tools are used in combination to detect defects such as optical losses, cracks, breakage, electric circuit degradation and PID. Under normal testing PID was detected and in some cases, modules were able to recover, while for advanced stage PID regeneration or PID reversal was difficult. This thesis focuses on PID detection at infancy using three approaches; EL imaging at current corresponding to 10% of Isc. Light and dark current – voltage measurements (L-IV & D-IV) and open circuit voltage (Voc) ratios at low irradiance. The early detection procedures are essential in reversing the degradation caused by PID which is reversible. The time taken to reverse the PID degradation will depend on the extent of the degradation. If detected early, it will take a short period of time to completely reverse lost power. Infrared thermography is a non-contact characteristic tool that can be deployed in large scale plants using drones to detect the presence of PID in PV plants. Module performance and device parameters extracted from the L-IV curves on a module before and after PID stress, such as Pmpp, Voc, Isc Fill Factor (FF), shunt resistance (Rsh) and series resistance (Rs) and ideality (n) are sensitive to PID shunting. Voc and Rsh drop significantly with the onset of PID, while Rs increases. The decrease in Voc and Rsh is due to heavy shunting on the module resulting in increased carrier recombination, while the increase in Rs is due to increased shunting paths leading to decreased photocurrent. When substantial degradation on a module occurs Pmpp, FF and n will drop and at very advanced stage of PID degradation Isc may drop excessively.
- Full Text:
- Date Issued: 2020
A framework for designing ambient assisted living services for disabled individuals
- Authors: Kyazze, Michael
- Date: 2018
- Subjects: Assistive computer technology , Computers and people with disabilities Self-help devices for people with disabilities People with disabilities -- Means of communication -- Technological innovations Communication devices for people with disabilities
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/31240 , vital:31347
- Description: Physically disabled individuals face a number of challenges when carrying out their everyday activities such as moving around, communicating with others, and their personal care. One way of overcoming these challenges is by using personal assistants. An alternative is to enable independence through assistive technology. This research aimed to investigate how physically disabled individuals experience these challenges, and how assistive technology can enable them to be more independent. In order to achieve the goal of this research, existing literature was reviewed on disability, assisted living, and interaction techniques. The literature study on disability identified some of the challenges faced by disabled individuals in their daily lives. In order to contextualize these challenges, interview studies with eighteen disabled individuals, and twelve personal assistants were carried out in Kampala, Uganda and Port Elizabeth, South Africa. The participants from both Uganda and South Africa were limited to those living in urban areas. The Ugandan participants noted that, whereas technology may assist their daily lives, their most essential needs are basic disability support aids such as wheelchairs and better long canes. This was in contrast with the South African participants, who have access to basic disability support aids. The South African participants identified their key needs as controlling an electronic environment without assistance, e.g. house lights, using a mobile phone, and using a computer without assistance. The interviews narrowed down the scope to focus on individuals with quadriplegia, specifically individuals who have limited hand use, but can comfortably speak and move their heads, and make gestures such as head shake and nod. Literature on assisted living technologies and frameworks, provided the technical foundation for the research. The literature review of interaction techniques identified a number of possible ways in which individuals with quadriplegia can interact with technology. An appropriate set of interaction techniques, namely head shake and nod, voice, and facial feature tracking were identified. Evaluations of the interaction techniques excluded head shake and nod, because of an inconsistency in detecting an individual’s head pose in different lighting conditions, when using a Microsoft Kinect. Voice and facial feature tracking using a standard computer camera were identified as the most suitable interaction techniques for this study. A framework for designing assisted living software services was developed. The framework allows disability researchers and solution developers to understand the needs of a given disability group, and design relevant solutions. To demonstrate that the proposed framework iii | P a g e addresses the main aim of this research, a prototype was developed that enables users to control smart lights (Phillips hue), a Smart TV (Samsung), and carry out basic navigation and webbrowsing on a computer. Users could interact with the software using voice and facial feature commands. A usability study was carried out with fifteen physically disabled individuals in Port Elizabeth, South Africa. The results of the evaluation study were highly positive. The successful evaluation of the prototype provided empirical evidence that the proposed framework does assist in the design of relevant and useful software services, to meet the unique needs of physically disabled individuals.
- Full Text:
- Date Issued: 2018
- Authors: Kyazze, Michael
- Date: 2018
- Subjects: Assistive computer technology , Computers and people with disabilities Self-help devices for people with disabilities People with disabilities -- Means of communication -- Technological innovations Communication devices for people with disabilities
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/31240 , vital:31347
- Description: Physically disabled individuals face a number of challenges when carrying out their everyday activities such as moving around, communicating with others, and their personal care. One way of overcoming these challenges is by using personal assistants. An alternative is to enable independence through assistive technology. This research aimed to investigate how physically disabled individuals experience these challenges, and how assistive technology can enable them to be more independent. In order to achieve the goal of this research, existing literature was reviewed on disability, assisted living, and interaction techniques. The literature study on disability identified some of the challenges faced by disabled individuals in their daily lives. In order to contextualize these challenges, interview studies with eighteen disabled individuals, and twelve personal assistants were carried out in Kampala, Uganda and Port Elizabeth, South Africa. The participants from both Uganda and South Africa were limited to those living in urban areas. The Ugandan participants noted that, whereas technology may assist their daily lives, their most essential needs are basic disability support aids such as wheelchairs and better long canes. This was in contrast with the South African participants, who have access to basic disability support aids. The South African participants identified their key needs as controlling an electronic environment without assistance, e.g. house lights, using a mobile phone, and using a computer without assistance. The interviews narrowed down the scope to focus on individuals with quadriplegia, specifically individuals who have limited hand use, but can comfortably speak and move their heads, and make gestures such as head shake and nod. Literature on assisted living technologies and frameworks, provided the technical foundation for the research. The literature review of interaction techniques identified a number of possible ways in which individuals with quadriplegia can interact with technology. An appropriate set of interaction techniques, namely head shake and nod, voice, and facial feature tracking were identified. Evaluations of the interaction techniques excluded head shake and nod, because of an inconsistency in detecting an individual’s head pose in different lighting conditions, when using a Microsoft Kinect. Voice and facial feature tracking using a standard computer camera were identified as the most suitable interaction techniques for this study. A framework for designing assisted living software services was developed. The framework allows disability researchers and solution developers to understand the needs of a given disability group, and design relevant solutions. To demonstrate that the proposed framework iii | P a g e addresses the main aim of this research, a prototype was developed that enables users to control smart lights (Phillips hue), a Smart TV (Samsung), and carry out basic navigation and webbrowsing on a computer. Users could interact with the software using voice and facial feature commands. A usability study was carried out with fifteen physically disabled individuals in Port Elizabeth, South Africa. The results of the evaluation study were highly positive. The successful evaluation of the prototype provided empirical evidence that the proposed framework does assist in the design of relevant and useful software services, to meet the unique needs of physically disabled individuals.
- Full Text:
- Date Issued: 2018
Megaherbivores in succulent thicket: resource use and implications
- Authors: Landman, Marietjie
- Date: 2012
- Subjects: Elephants , African elephant , Black rhinoceros , Succulent plants
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10689 , http://hdl.handle.net/10948/d1007956 , Elephants , African elephant , Black rhinoceros , Succulent plants
- Description: This study aims to develop a predictive understanding of the resource use, impacts and interactions of elephant Loxodonta africana and black rhinoceros Diceros bicornis in the succulent thickets of the Eastern Cape, South Africa. While these megaherbivores typically dominate the biomass, elephant are more abundant, such that their impacts off-set that of all other herbivores. Consequently, this thesis has three main foci: first, developing a mechanistic understanding of the influences of elephant; second, developing predictive insights into elephant impacts on plant communities; finally, an understanding of the knockon-effects of the impacts for coexisting rhinoceros. Thus, by documenting the diet and dietary preferences of elephant, I firstly show that only about 18 percent of the species previously thought vulnerable to herbivory, occur in the diet. This refutes the generally held belief that elephant herbivory is the primary driver of decline among plants, and emphasizes the likely contribution of other mechanisms (e.g. trampling, knock-on-effects, etc.). Thus, the accurate prediction of the impacts caused by elephant requires an understanding of previously marginalized mechanisms. From here, I quantify >50 years of impacts on the thicket shrub community and test their spatial and temporal extent near water. I confirm the vulnerability of thicket to transformation (particularly near water) as the accumulated influences of elephant reduce community composition and structure, and predict that these impacts will eventually bring about landscape-level degradation and a significant loss of biodiversity. Importantly, results show an uneven distribution of effects between elements of this community: from community composition and structure, to the structure of individual canopy species and ecological functioning. While these findings confound our interpretation of the extent of the impacts, it demonstrates the importance of explicitly recognizing biodiversity and heterogeneity for the conservation management of elephant. Finally, I test the consequences of the impacts for coexisting rhinoceros. While I show that this causes rhinoceros to change their foraging strategies in the presence of elephant at high densities, I also show that elephant may facilitate access to food for rhinoceros at reduced densities. These findings indicate the importance of elephant in driving the structure and composition of the thicket shrub community and the consequences of this for coexisting large herbivores. Thus, developing a predictive understanding of the spatial and temporal variations of elephant impacts between elements of biodiversity and the mechanisms driving these changes are key to their management. This implies that the effective conservation management of elephant can only be achieved through the careful, scientific design of monitoring programmes.
- Full Text:
- Date Issued: 2012
- Authors: Landman, Marietjie
- Date: 2012
- Subjects: Elephants , African elephant , Black rhinoceros , Succulent plants
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10689 , http://hdl.handle.net/10948/d1007956 , Elephants , African elephant , Black rhinoceros , Succulent plants
- Description: This study aims to develop a predictive understanding of the resource use, impacts and interactions of elephant Loxodonta africana and black rhinoceros Diceros bicornis in the succulent thickets of the Eastern Cape, South Africa. While these megaherbivores typically dominate the biomass, elephant are more abundant, such that their impacts off-set that of all other herbivores. Consequently, this thesis has three main foci: first, developing a mechanistic understanding of the influences of elephant; second, developing predictive insights into elephant impacts on plant communities; finally, an understanding of the knockon-effects of the impacts for coexisting rhinoceros. Thus, by documenting the diet and dietary preferences of elephant, I firstly show that only about 18 percent of the species previously thought vulnerable to herbivory, occur in the diet. This refutes the generally held belief that elephant herbivory is the primary driver of decline among plants, and emphasizes the likely contribution of other mechanisms (e.g. trampling, knock-on-effects, etc.). Thus, the accurate prediction of the impacts caused by elephant requires an understanding of previously marginalized mechanisms. From here, I quantify >50 years of impacts on the thicket shrub community and test their spatial and temporal extent near water. I confirm the vulnerability of thicket to transformation (particularly near water) as the accumulated influences of elephant reduce community composition and structure, and predict that these impacts will eventually bring about landscape-level degradation and a significant loss of biodiversity. Importantly, results show an uneven distribution of effects between elements of this community: from community composition and structure, to the structure of individual canopy species and ecological functioning. While these findings confound our interpretation of the extent of the impacts, it demonstrates the importance of explicitly recognizing biodiversity and heterogeneity for the conservation management of elephant. Finally, I test the consequences of the impacts for coexisting rhinoceros. While I show that this causes rhinoceros to change their foraging strategies in the presence of elephant at high densities, I also show that elephant may facilitate access to food for rhinoceros at reduced densities. These findings indicate the importance of elephant in driving the structure and composition of the thicket shrub community and the consequences of this for coexisting large herbivores. Thus, developing a predictive understanding of the spatial and temporal variations of elephant impacts between elements of biodiversity and the mechanisms driving these changes are key to their management. This implies that the effective conservation management of elephant can only be achieved through the careful, scientific design of monitoring programmes.
- Full Text:
- Date Issued: 2012
Investigating the fitness of sea turtles nesting in South Africa
- Le Gouvello du Timat, Diane Z M
- Authors: Le Gouvello du Timat, Diane Z M
- Date: 2020
- Subjects: Sea turtles -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/48445 , vital:40877
- Description: The South African rookeries of the South Western Indian Ocean (SWIO) loggerhead and leatherback regional management units have been continuously monitored for more than 5 decades, representing one of the longest-running sea turtle beach protection and monitoring programmes in the world. Although such conservation has been successful in protecting adults on land when they come to nest, it might not be enough to ensure population recovery if survival is not ensured across all life stages. Sea turtles are particularly vulnerable to direct threats and changing environmental conditions because they are long-lived, slow maturing, and have low survival rates at early life stages, making them conservation-dependent. These characteristics also render them difficult to conserve as a consequence of their wide geographic distributions, spanning multiple jurisdictions and legislative systems with different conservation targets, and a complex life cycle with changes in habitats and diets at different life stages. Sea turtle populations have been severely depleted as a result of historical over-exploitation and current threats including fisheries bycatch, direct harvest, habitat loss, pollution and pathogens, and climate change. In many cases however, population declines have been reversed by a variety of effective conservation measures such as beach protection programs, and marine protected areas, enabling successful population recovery around the world. Despite protection and apparent increase in abundance, indirect pressures can still affect turtle populations. Therefore, it is fundamental to evaluate the effectiveness of conservation measures (using fitness traits such as female and hatchling sizes) and examine underlying trends. The aim of this thesis was thus to evaluate the fitness of loggerhead and leatherback sea turtles nesting in South Africa. Long-term female size trends over time were evaluated and the populations were split between first-time nesters and experienced nesters. As sea turtle reproductive output (clutch size only) is correlated with female size and evidence is showing that in some populations individual female size is decreasing, the effects of maternal body size on reproductive output and hatchling fitness were investigated for both species. Crawling and swimming speeds were used as proxies of hatchling fitness, because these two traits positively influence their survival. An oceanic model was further used in combination with a particle tracking framework to estimate, for the first time, post-hatchling dispersal of loggerhead and leatherback turtles in the SWIO. I investigated whether the trend in female size for loggerhead turtles nesting in South Africa is a result of their foraging strategy to determine if there is a foraging dichotomy (neritic and oceanic). Despite an apparent increasing population, a significant 3.7 and 3.6 cm decrease in the size of both recruit and remingrant female loggerhead turtles, but a stable mean size of leatherbacks for both age groups was observed. I hypothesise that these contradictory effects are attributable to the very distinct foraging ecologies of the two turtle species and speculate that these variations in carapace length may be driven by environmental change. The reproductive strategy of both loggerhead and leatherback turtles nesting in South Africa supports the optimal egg size theory with larger turtles producing larger clutches but not larger eggs. Egg size was thus constant irrespective of maternal length. Hatchlings with longer carapaces and flippers had higher swimming speed, suggesting that larger hatchlings are fitter (potentially higher survival) than smaller ones by spending less time in high predation risk areas (i.e. beach and nearshore). The model revealed that dispersal trajectories of both loggerhead and leatherback sea turtle hatchlings were very similar and simulations indicated that initial active swimming (frenzy) as well as variability in oceanic conditions strongly influenced dispersal of virtual hatchlings. The trends observed in this study emphasize the importance of long-term monitoring, examining not only abundance but also individual size, to understand population dynamics, support recovery planning and prioritize future conservation practices. Furthermore, the findings of this study have important implications for overall population growth if smaller hatchlings of lower fitness are produced as a result of climate change and thus have decreased dispersal abilities and lower likelihood of survival.
- Full Text:
- Date Issued: 2020
- Authors: Le Gouvello du Timat, Diane Z M
- Date: 2020
- Subjects: Sea turtles -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/48445 , vital:40877
- Description: The South African rookeries of the South Western Indian Ocean (SWIO) loggerhead and leatherback regional management units have been continuously monitored for more than 5 decades, representing one of the longest-running sea turtle beach protection and monitoring programmes in the world. Although such conservation has been successful in protecting adults on land when they come to nest, it might not be enough to ensure population recovery if survival is not ensured across all life stages. Sea turtles are particularly vulnerable to direct threats and changing environmental conditions because they are long-lived, slow maturing, and have low survival rates at early life stages, making them conservation-dependent. These characteristics also render them difficult to conserve as a consequence of their wide geographic distributions, spanning multiple jurisdictions and legislative systems with different conservation targets, and a complex life cycle with changes in habitats and diets at different life stages. Sea turtle populations have been severely depleted as a result of historical over-exploitation and current threats including fisheries bycatch, direct harvest, habitat loss, pollution and pathogens, and climate change. In many cases however, population declines have been reversed by a variety of effective conservation measures such as beach protection programs, and marine protected areas, enabling successful population recovery around the world. Despite protection and apparent increase in abundance, indirect pressures can still affect turtle populations. Therefore, it is fundamental to evaluate the effectiveness of conservation measures (using fitness traits such as female and hatchling sizes) and examine underlying trends. The aim of this thesis was thus to evaluate the fitness of loggerhead and leatherback sea turtles nesting in South Africa. Long-term female size trends over time were evaluated and the populations were split between first-time nesters and experienced nesters. As sea turtle reproductive output (clutch size only) is correlated with female size and evidence is showing that in some populations individual female size is decreasing, the effects of maternal body size on reproductive output and hatchling fitness were investigated for both species. Crawling and swimming speeds were used as proxies of hatchling fitness, because these two traits positively influence their survival. An oceanic model was further used in combination with a particle tracking framework to estimate, for the first time, post-hatchling dispersal of loggerhead and leatherback turtles in the SWIO. I investigated whether the trend in female size for loggerhead turtles nesting in South Africa is a result of their foraging strategy to determine if there is a foraging dichotomy (neritic and oceanic). Despite an apparent increasing population, a significant 3.7 and 3.6 cm decrease in the size of both recruit and remingrant female loggerhead turtles, but a stable mean size of leatherbacks for both age groups was observed. I hypothesise that these contradictory effects are attributable to the very distinct foraging ecologies of the two turtle species and speculate that these variations in carapace length may be driven by environmental change. The reproductive strategy of both loggerhead and leatherback turtles nesting in South Africa supports the optimal egg size theory with larger turtles producing larger clutches but not larger eggs. Egg size was thus constant irrespective of maternal length. Hatchlings with longer carapaces and flippers had higher swimming speed, suggesting that larger hatchlings are fitter (potentially higher survival) than smaller ones by spending less time in high predation risk areas (i.e. beach and nearshore). The model revealed that dispersal trajectories of both loggerhead and leatherback sea turtle hatchlings were very similar and simulations indicated that initial active swimming (frenzy) as well as variability in oceanic conditions strongly influenced dispersal of virtual hatchlings. The trends observed in this study emphasize the importance of long-term monitoring, examining not only abundance but also individual size, to understand population dynamics, support recovery planning and prioritize future conservation practices. Furthermore, the findings of this study have important implications for overall population growth if smaller hatchlings of lower fitness are produced as a result of climate change and thus have decreased dispersal abilities and lower likelihood of survival.
- Full Text:
- Date Issued: 2020
The effects of goat browsing on ecosystem patterns and processes in succulent thicket, South Africa
- Lechmere-Oertel, Richard Geoffrey
- Authors: Lechmere-Oertel, Richard Geoffrey
- Date: 2003
- Subjects: Succulent plants -- South Africa -- Eastern Cape , Landscape ecology -- South Africa -- Eastern Cape , Goats -- Feeding and feeds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:11074 , http://hdl.handle.net/10948/309 , Succulent plants -- South Africa -- Eastern Cape , Landscape ecology -- South Africa -- Eastern Cape , Goats -- Feeding and feeds
- Description: Transformation in the arid succulent thicket of the Eastern Cape of South Africa in response to unsustainable livestock production has been widespread, with less than 10 percent remaining intact. Transformation in succulent thicket has resulted in large areas of dense thicket (comprising a two-phase mosaic of perennial-vegetated patches separated by animal paths and bare patches) being replaced with a ‘pseudo-savanna’ of remnant canopy trees with a structurally simple field layer of ephemeral and short- lived perennial grasses and forbs. There is an extensive literature describing the transformation of succulent thicket, with many speculative statements about the underlying mechanisms of transformation. The central focus of this study was to improve our mechanistic understanding of transformation in succulent thicket using field experiments. Hopefully these results will set another foundation upon which future management of succulent thicket can be improved and large-scale restoration initiated. This study comprises four themes that are linked to the concept of landscape function. The central premise of landscape function is that functional landscapes have mechanisms that capture and retain scarce resources. Conversely, as landscapes become increasingly dysfunctional, so these mechanisms become disrupted. In succulent thicket, dysfunctio n appears to be linked to the reduced ability to harvest water, cycle carbon and a loss of organic carbon. In this thesis I examined some of the key processes that influence water and organic carbon fluxes: perennial vegetation cover, soil fertility, litter fall and decomposition, and runoff and soil erosion. The experimental design that was used for all this work was a factorial ANOVA based on replicated fenceline contrasts that reflect differences in long-term management history. The main objectives of this thesis were to: quantify the patterns of transformation in an arid form of succulent thicket, including changes in the biomass, cover and structure of the dominant vegetation guilds; test the stability of the transformed succulent thicket ecosystem to show whether it is a new stable state or an intermediate stage in a trajectory towards a highly desertified state where only the ephemeral grasses and forbs persist; describe and compare soil fertility across transformation contrasts, concentrating on changes in the spatial patterns of soil resources and the ability of the soil to harvest precipitation; to compare litter fall and decomposition of leaf material from the dominant plants in intact and transformed succulent thicket; to quantify and compare run-off and erosion from run-off plots in intact and transformed succulent thicket. Transformation and stability I quantified the changes in plant diversity, physiognomy and biomass that occur across transformation contrasts. Thicket transformation results in a significant loss of plant diversity and functional types. There is also a significant reduction in the biomass (c. 80 t.ha-1) and structural complexity of the vegetation, both vertically and horizontally. These results were interpreted in terms of their implications for ecosystem functioning and stability. To test the stability of the transformed succulent thicket I used aerial photographs and ground-truthing to track the survivorship of canopy trees over 60 years in pseudo-savanna landscapes. I also measured seedling establishment in different habitats. I show that the pseudo-savanna is not a stable state owing to ongoing adult mortality and no recruitment of canopy trees. Soil fertility and water status I hypothesised that the above-ground changes in ve getation would be accompanied by similar trends in the pattern and levels of soil nutrient resources and the ability of the landscape to harvest precipitation. I compared soil fertility (organic carbon, available nitrogen and phosphorus), texture, matric potential, and surface micro-topography in the two main micro- habitats on either side of the replicated fenceline contrasts. The results show that intact spekboom thicket has a distinct spatial pattern of soil fertility where nutrients and organic carbon are concentrated under the patches of perennial shrubs, compared to under canopy trees and open spaces. Transformation results in a significant homogenisation out of this pattern and an overall reduction in the fertility of the landscape. The proportion of the landscape surface that would promote infiltration of water decreases from 60 – 0.6 percent. Soil moisture retention (matric potential) also decreases with transformation. I interpreted these patterns in terms of the ability of the landscape to harvest and release water after rainfall events. Litter fall and decomposition Surface litter and soil organic matter are critical components to wooded ecosystems; contributing to several ecosystem functions. The rates of litter fall and decomposition are ratelimiting steps in nutrient cycling and incorporation of organic matter into the soil. The ecological mechanisms behind the collapse of succulent thicket in the face of domestic herbivory are not fully understood, but are believed to include the breakdown of several ecosystem processes, including litter fall and decomposition. I quantified the changes in litter fall and litter decomposition of four of the dominant perennial woody plants (Euclea undulata, Pappea capensis, Portulacaria afra and Rhus longispina) across the replicated fenceline. Litter fall was measured over 14 months using mesh traps. Decomposition was measured over 15 months using a combination of litterbags and unprotected leaf packs. I also quantified soil microclimate during the experimental period; hypothesising that transformation would lead to soil conditions less amenable for biotic activity. Litter fall in succulent thicket was very high for a semi-arid system, comparing more to temperate forests. The leaf-succulent P. afra contributed the largest single component of the total litter production at a landscape scale. The effect of transformation on litter fall was species specific. Deep-rooted or drought-adapted species showed no change in litter yield with transformation; shallow-rooted species showed a significant decrease. There were few significant differences in decomposition rates across the transformation gradient and between litter types. Portulacaria afra litter had the steepest rate of mass loss, and was most affected by transformation. The more recalcitrant (high C:N ratio) leaves of P. capensis remained largely unaffected by transformation. These results indicate the critical role of the perennial vegetation in incorporating organic carbon into the soil. Transformation of succulent thicket leads to a disruption of the flow of carbon into the soil, reinforcing the cycle of transformation through reduced fertility. Rehabilitation of this ecosystem will require the active establishment of species, such as P. afra, that will restart the flow of carbon into the soil. Run-off & Erosion The landscape function model predicts that functional semi-arid shrublands efficiently conserve limiting resources such as water and water-bourn sediments (soil and organic matter). As these rangelands become transformed through unsustainable livestock production, so their ability to conserve resources decreases. The primary determinant of landscape function and conservation of resources appears to be the proportional cover of perennial vegetation. I hypothesised that the switch from a two-phase mosaic dominated by perennial succulent and woody shrubs to a single phase system dominated by an ephemeral field layer would be accompanied by disruption of the mechanisms that conserve resources. Specifically, I tested the hypothesis that transformation of succulent thicket increases runoff volume, sediment concentration of runoff, soil erosion and loss of organic matter at a patch scale (c. 100 m2). Runoff and water-borne sediment were measured from runoff plots established across replicated fenceline contrasts. Data were collected from eight extreme weather events over two years. There were no significant differences between runoff and erosion across the transformation contrast, as each extreme weather event was unique in terms of its runoff response. The transformed runoff plots alone also gave inconsistent results, largely due to differences in the cover of ephemeral forbs and weakly perennial grasses. Runoff and erosion were not predictable from the data across the transformation gradient due to complex interactions between the nature of the above-ground vegetation, soil micro-topography and land use history. The results highlighted the need for longer-term catchment experiments to generate a predictive understanding of the effect of transformation on runoff and erosion in succulent thicket.
- Full Text:
- Date Issued: 2003
- Authors: Lechmere-Oertel, Richard Geoffrey
- Date: 2003
- Subjects: Succulent plants -- South Africa -- Eastern Cape , Landscape ecology -- South Africa -- Eastern Cape , Goats -- Feeding and feeds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:11074 , http://hdl.handle.net/10948/309 , Succulent plants -- South Africa -- Eastern Cape , Landscape ecology -- South Africa -- Eastern Cape , Goats -- Feeding and feeds
- Description: Transformation in the arid succulent thicket of the Eastern Cape of South Africa in response to unsustainable livestock production has been widespread, with less than 10 percent remaining intact. Transformation in succulent thicket has resulted in large areas of dense thicket (comprising a two-phase mosaic of perennial-vegetated patches separated by animal paths and bare patches) being replaced with a ‘pseudo-savanna’ of remnant canopy trees with a structurally simple field layer of ephemeral and short- lived perennial grasses and forbs. There is an extensive literature describing the transformation of succulent thicket, with many speculative statements about the underlying mechanisms of transformation. The central focus of this study was to improve our mechanistic understanding of transformation in succulent thicket using field experiments. Hopefully these results will set another foundation upon which future management of succulent thicket can be improved and large-scale restoration initiated. This study comprises four themes that are linked to the concept of landscape function. The central premise of landscape function is that functional landscapes have mechanisms that capture and retain scarce resources. Conversely, as landscapes become increasingly dysfunctional, so these mechanisms become disrupted. In succulent thicket, dysfunctio n appears to be linked to the reduced ability to harvest water, cycle carbon and a loss of organic carbon. In this thesis I examined some of the key processes that influence water and organic carbon fluxes: perennial vegetation cover, soil fertility, litter fall and decomposition, and runoff and soil erosion. The experimental design that was used for all this work was a factorial ANOVA based on replicated fenceline contrasts that reflect differences in long-term management history. The main objectives of this thesis were to: quantify the patterns of transformation in an arid form of succulent thicket, including changes in the biomass, cover and structure of the dominant vegetation guilds; test the stability of the transformed succulent thicket ecosystem to show whether it is a new stable state or an intermediate stage in a trajectory towards a highly desertified state where only the ephemeral grasses and forbs persist; describe and compare soil fertility across transformation contrasts, concentrating on changes in the spatial patterns of soil resources and the ability of the soil to harvest precipitation; to compare litter fall and decomposition of leaf material from the dominant plants in intact and transformed succulent thicket; to quantify and compare run-off and erosion from run-off plots in intact and transformed succulent thicket. Transformation and stability I quantified the changes in plant diversity, physiognomy and biomass that occur across transformation contrasts. Thicket transformation results in a significant loss of plant diversity and functional types. There is also a significant reduction in the biomass (c. 80 t.ha-1) and structural complexity of the vegetation, both vertically and horizontally. These results were interpreted in terms of their implications for ecosystem functioning and stability. To test the stability of the transformed succulent thicket I used aerial photographs and ground-truthing to track the survivorship of canopy trees over 60 years in pseudo-savanna landscapes. I also measured seedling establishment in different habitats. I show that the pseudo-savanna is not a stable state owing to ongoing adult mortality and no recruitment of canopy trees. Soil fertility and water status I hypothesised that the above-ground changes in ve getation would be accompanied by similar trends in the pattern and levels of soil nutrient resources and the ability of the landscape to harvest precipitation. I compared soil fertility (organic carbon, available nitrogen and phosphorus), texture, matric potential, and surface micro-topography in the two main micro- habitats on either side of the replicated fenceline contrasts. The results show that intact spekboom thicket has a distinct spatial pattern of soil fertility where nutrients and organic carbon are concentrated under the patches of perennial shrubs, compared to under canopy trees and open spaces. Transformation results in a significant homogenisation out of this pattern and an overall reduction in the fertility of the landscape. The proportion of the landscape surface that would promote infiltration of water decreases from 60 – 0.6 percent. Soil moisture retention (matric potential) also decreases with transformation. I interpreted these patterns in terms of the ability of the landscape to harvest and release water after rainfall events. Litter fall and decomposition Surface litter and soil organic matter are critical components to wooded ecosystems; contributing to several ecosystem functions. The rates of litter fall and decomposition are ratelimiting steps in nutrient cycling and incorporation of organic matter into the soil. The ecological mechanisms behind the collapse of succulent thicket in the face of domestic herbivory are not fully understood, but are believed to include the breakdown of several ecosystem processes, including litter fall and decomposition. I quantified the changes in litter fall and litter decomposition of four of the dominant perennial woody plants (Euclea undulata, Pappea capensis, Portulacaria afra and Rhus longispina) across the replicated fenceline. Litter fall was measured over 14 months using mesh traps. Decomposition was measured over 15 months using a combination of litterbags and unprotected leaf packs. I also quantified soil microclimate during the experimental period; hypothesising that transformation would lead to soil conditions less amenable for biotic activity. Litter fall in succulent thicket was very high for a semi-arid system, comparing more to temperate forests. The leaf-succulent P. afra contributed the largest single component of the total litter production at a landscape scale. The effect of transformation on litter fall was species specific. Deep-rooted or drought-adapted species showed no change in litter yield with transformation; shallow-rooted species showed a significant decrease. There were few significant differences in decomposition rates across the transformation gradient and between litter types. Portulacaria afra litter had the steepest rate of mass loss, and was most affected by transformation. The more recalcitrant (high C:N ratio) leaves of P. capensis remained largely unaffected by transformation. These results indicate the critical role of the perennial vegetation in incorporating organic carbon into the soil. Transformation of succulent thicket leads to a disruption of the flow of carbon into the soil, reinforcing the cycle of transformation through reduced fertility. Rehabilitation of this ecosystem will require the active establishment of species, such as P. afra, that will restart the flow of carbon into the soil. Run-off & Erosion The landscape function model predicts that functional semi-arid shrublands efficiently conserve limiting resources such as water and water-bourn sediments (soil and organic matter). As these rangelands become transformed through unsustainable livestock production, so their ability to conserve resources decreases. The primary determinant of landscape function and conservation of resources appears to be the proportional cover of perennial vegetation. I hypothesised that the switch from a two-phase mosaic dominated by perennial succulent and woody shrubs to a single phase system dominated by an ephemeral field layer would be accompanied by disruption of the mechanisms that conserve resources. Specifically, I tested the hypothesis that transformation of succulent thicket increases runoff volume, sediment concentration of runoff, soil erosion and loss of organic matter at a patch scale (c. 100 m2). Runoff and water-borne sediment were measured from runoff plots established across replicated fenceline contrasts. Data were collected from eight extreme weather events over two years. There were no significant differences between runoff and erosion across the transformation contrast, as each extreme weather event was unique in terms of its runoff response. The transformed runoff plots alone also gave inconsistent results, largely due to differences in the cover of ephemeral forbs and weakly perennial grasses. Runoff and erosion were not predictable from the data across the transformation gradient due to complex interactions between the nature of the above-ground vegetation, soil micro-topography and land use history. The results highlighted the need for longer-term catchment experiments to generate a predictive understanding of the effect of transformation on runoff and erosion in succulent thicket.
- Full Text:
- Date Issued: 2003
Estuarine microalgal bloom dynamics at multiple temporal scales
- Authors: Lemley, Daniel Alan
- Date: 2018
- Subjects: Ecological integrity -- South Africa , Phytoplankton populations -- South Africa , Estuarine ecology -- South Africa , Freshwater algae -- Ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/21044 , vital:29431
- Description: Microalgal communities sustain the ecological functioning of estuarine ecosystems through the provision of numerous ecosystem services. As such, gaining an understanding of the processes that govern spatio-temporal patterns of phytoplankton communities is key to the effective management of these ecosystems. However, detailed investigations of estuarine phytoplankton dynamics, and particularly harmful algal blooms (HAB), are largely absent in South Africa. Therefore, geared at addressing these knowledge gaps, this study was initiated to elucidate the processes shaping estuarine phytoplankton bloom dynamics at multiple temporal scales. Initially, five permanently open estuaries, each with varying types and levels of anthropogenic pressures, were selected to test the efficacy of an estuarine eutrophic condition index to flow variability (‘Annual’ study). Results from this study highlighted the sensitivity of the proposed index to environmental perturbations (e.g. flood events), whilst also identifying freshwater inflow variability and anthropogenic disturbance as the key processes shaping microalgal responses at an annual scale. Next, the agriculturally-influenced Gamtoos and Sundays estuaries were further investigated to elucidate the role of natural and anthropogenic drivers in defining microalgal responses (‘Seasonal’ study). Despite similarities in nutrient input and temperature patterns, phytoplankton bloom conditions (> 20 μg Chl-a l-1) were episodic and flow-dependent in the Gamtoos Estuary, whilst those in the Sundays Estuary were persistent and seasonal. Related to its reduced hydrodynamic variability – i.e. consistent nutrient-rich baseflows and reduced propensity for flushing events – persistent undesirable disturbances were highlighted for the Sundays Estuary, including: summer bottom-water hypoxia (< 2 mg l-1) and exceptional proliferations (> 550 μg Chl-a l-1) of two HAB species (Heterosigma akashiwo and Heterocapsa rotundata). Finally, fine-scale ecological research was undertaken in the Sundays Estuary to identify the processes – abiotic and biotic – that facilitate HABs (‘Daily’ and ‘Hourly’ studies). Findings from the ‘Daily’ study, identified inorganic nutrient availability (i.e. nitrate and phosphate) and mesohaline conditions (ca. 10) as the key bottom-up controls influencing the magnitude and duration of spring/summer phytoplankton blooms. Additionally, bottom-water hypoxia was explicitly linked to the decay of a single HAB species. During the ‘Hourly’ investigation, four known HAB-forming species were recorded at bloom concentrations. Model results indicated that variability in temperature, salinity profiles and nitrate concentrations were significant in facilitating the occurrence of HAB species. Finally, local biotic interactions (e.g. interspecies competition, diel vertical migration and mixotrophy) were recognized as key mechanisms shaping phytoplankton communities. The persistent occurrence of HABs is a new feature in South African estuaries and continued research is needed to recommend management responses. Ultimately, this research highlights the multitude of processes at work shaping phytoplankton variability in estuaries. From a broad perspective (i.e. seasonal and annual), processes such as freshwater inflow regimes, degree of anthropogenic disturbance, as well as seasonal temperature and nutrient supply patterns are the key processes. At a more refined scale (i.e. hourly and daily), local processes including salinity preferences, nutrient availability, diel light cycles and internal biotic interactions are the key drivers organising phytoplankton dynamics. Given the potentially severe ecological consequences of disrupting natural phytoplankton dynamics (e.g. HABs), an element of ‘unpredictability’ should be restored to the hydrological and chemical makeup of highly-regulated estuaries to prevent the continued exacerbation of eutrophic symptoms.
- Full Text:
- Date Issued: 2018
- Authors: Lemley, Daniel Alan
- Date: 2018
- Subjects: Ecological integrity -- South Africa , Phytoplankton populations -- South Africa , Estuarine ecology -- South Africa , Freshwater algae -- Ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/21044 , vital:29431
- Description: Microalgal communities sustain the ecological functioning of estuarine ecosystems through the provision of numerous ecosystem services. As such, gaining an understanding of the processes that govern spatio-temporal patterns of phytoplankton communities is key to the effective management of these ecosystems. However, detailed investigations of estuarine phytoplankton dynamics, and particularly harmful algal blooms (HAB), are largely absent in South Africa. Therefore, geared at addressing these knowledge gaps, this study was initiated to elucidate the processes shaping estuarine phytoplankton bloom dynamics at multiple temporal scales. Initially, five permanently open estuaries, each with varying types and levels of anthropogenic pressures, were selected to test the efficacy of an estuarine eutrophic condition index to flow variability (‘Annual’ study). Results from this study highlighted the sensitivity of the proposed index to environmental perturbations (e.g. flood events), whilst also identifying freshwater inflow variability and anthropogenic disturbance as the key processes shaping microalgal responses at an annual scale. Next, the agriculturally-influenced Gamtoos and Sundays estuaries were further investigated to elucidate the role of natural and anthropogenic drivers in defining microalgal responses (‘Seasonal’ study). Despite similarities in nutrient input and temperature patterns, phytoplankton bloom conditions (> 20 μg Chl-a l-1) were episodic and flow-dependent in the Gamtoos Estuary, whilst those in the Sundays Estuary were persistent and seasonal. Related to its reduced hydrodynamic variability – i.e. consistent nutrient-rich baseflows and reduced propensity for flushing events – persistent undesirable disturbances were highlighted for the Sundays Estuary, including: summer bottom-water hypoxia (< 2 mg l-1) and exceptional proliferations (> 550 μg Chl-a l-1) of two HAB species (Heterosigma akashiwo and Heterocapsa rotundata). Finally, fine-scale ecological research was undertaken in the Sundays Estuary to identify the processes – abiotic and biotic – that facilitate HABs (‘Daily’ and ‘Hourly’ studies). Findings from the ‘Daily’ study, identified inorganic nutrient availability (i.e. nitrate and phosphate) and mesohaline conditions (ca. 10) as the key bottom-up controls influencing the magnitude and duration of spring/summer phytoplankton blooms. Additionally, bottom-water hypoxia was explicitly linked to the decay of a single HAB species. During the ‘Hourly’ investigation, four known HAB-forming species were recorded at bloom concentrations. Model results indicated that variability in temperature, salinity profiles and nitrate concentrations were significant in facilitating the occurrence of HAB species. Finally, local biotic interactions (e.g. interspecies competition, diel vertical migration and mixotrophy) were recognized as key mechanisms shaping phytoplankton communities. The persistent occurrence of HABs is a new feature in South African estuaries and continued research is needed to recommend management responses. Ultimately, this research highlights the multitude of processes at work shaping phytoplankton variability in estuaries. From a broad perspective (i.e. seasonal and annual), processes such as freshwater inflow regimes, degree of anthropogenic disturbance, as well as seasonal temperature and nutrient supply patterns are the key processes. At a more refined scale (i.e. hourly and daily), local processes including salinity preferences, nutrient availability, diel light cycles and internal biotic interactions are the key drivers organising phytoplankton dynamics. Given the potentially severe ecological consequences of disrupting natural phytoplankton dynamics (e.g. HABs), an element of ‘unpredictability’ should be restored to the hydrological and chemical makeup of highly-regulated estuaries to prevent the continued exacerbation of eutrophic symptoms.
- Full Text:
- Date Issued: 2018
Sedimentology and sequence stratigraphy of the Congo and Kalahari basins of South Central Africa and their evolution during the formation and break-up of West Gondwana
- Authors: Linol, Bastien
- Date: 2013
- Subjects: Sedimentary basins -- Africa , Sedimentology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10655 , http://hdl.handle.net/10948/d1012148 , Sedimentary basins -- Africa , Sedimentology
- Description: The high elevated (ca. 1100 m) continental Kalahari Basin (KB) of southern Africa and the linked lower lying (ca. 400 m) Congo Basin (CB) of central Africa preserve in their interiors extensive sedimentary rock sequences and sediments that represent a unique record of the Phanerozoic geodynamic and climatic evolution of sub-Saharan Africa. In this thesis, field observations and new borehole data from the Democratic Republic of Congo (DRC) and Botswana are integrated with new paleontology and geochronology to present a substantially revised stratigraphy for the CB, and south-central Africa in general. This work also introduces a new multiphase model for the subsidence and uplift history of the CB, and improves correlations with the Cape-Karoo Basin (CKB) of South Africa and the Paraná Basin (PB) of south-east Brazil. Four deep boreholes, each between 2 and 4.5 km deep, drilled in the centre of the CB in the 1950’s and 1970’s are re-examined together with the colonial literature (in French) and available seismic data. This stratigraphic and basin analysis is complemented with new U-Pb dates of detrital zircons from core-samples of two of the boreholes (Samba and Dekese), as well as from samples collected during field work in the Kwango region of the south-west DRC. This work, for the first time, constrains the maximum ages and source provenances of the successions in the CB. Following the Pan African orogens (ca. 650-530 Ma), extensive sequences of red beds were deposited by regional paleocurrents to the south. These are now best preserved (1 km thick) along the West Congo, Oubanguides, and Lufilian Belts surrounding the CB. Overlying a hiatus that represents most of the early-Paleozoic, is a 1 to 3 km thick succession of easterly derived glacial, and then continental sequences of the Karoo Supergroup. This succession records the first main episode of subsidence [10-15 m/Ma], interrupted by a phase of uplift that is likely related to far-field intracontinental deformation within Gondwana supercontinent during the Variscan and Cape Fold orogenies (ca. 250-330 Ma) at its peripheries. Detrital zircons from the lower Karoo diamictites are dated at 1.85-2.05 Ga and 1.37- 1.42 Ga, and thus sourced from Paleoproterozoic (Eburnean) and mid-Mesoproterozoic (Kibaran type-I) basement rocks in Uganda and Tanzania. Zircons from all the other successions in the CB date predominantly at 950-1050 Ma and 500-800 Ma. These are derived from sediment recycling of late-Mesoproterozoic (Kibaran type-II) and late- Neoproterozoic (Pan African) sources in the Central African Republic (CAR) and Chad. A distinct unconformity across the Karoo Supergroup in the CB is overlain by 500- 1000 m Jurassic-Cretaceous sequences, here named the Congo Supergroup. During initial rapid subsidence [10-50 m/Ma], late-Jurassic (Kimmeridgian) shallow marine to continental sedimentation attests to a short transgression of proto-Indian Ocean waters into the northern CB (at 160 m above present day sea-level), succeeded by widespread deposition of aeolian dunes that extend from the southern CB to the PB in South America. The youngest zircons from these aeolian sediments in the CB date at 190 Ma and 240-290 Ma, and most likely indicate the influence of extensive silicic volcanic ash derived from the proto-Andes along the south-western margin of Gondwana. Two superimposed mid-Cretaceous (Albian-Cenomanian) lacustrine sequences in the central CB record a succeeding, slower [10-15 m/Ma], phase of basin subsidence during the opening of the South Atlantic (ca. 85-135 Ma). These Cretaceous sequences are in turn truncated by another regional peneplanation surface covered by Cenozoic (Eocene) silcretized sands and alluviums of the Kalahari Group, only 50-250 m thick in the centre of the CB. Southward, on top of the Kalahari Plateau in the central desert region of north-west Botswana, new boreholes intercepted laterally equivalent condensed lacustrine carbonates and calcretes (20-50 m thick) covered by sands. These terrestrial sequences are key archives of late-Mesozoic – Cenozoic paleo-climate changes, yet they remain stratigraphically unresolved. This new analysis of the Phanerozoic continental basins of south-central Africa and their equivalents in South America, opens a fresh continental-scale window into how West Gondwana break-up and concomitant epeirogenic uplifts of Kalahari (>2 km) and Congo (>200 m) are linked to interactions between the lithosphere and mantle geodynamics, and how these processes likely affected global climate changes.
- Full Text:
- Date Issued: 2013
- Authors: Linol, Bastien
- Date: 2013
- Subjects: Sedimentary basins -- Africa , Sedimentology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10655 , http://hdl.handle.net/10948/d1012148 , Sedimentary basins -- Africa , Sedimentology
- Description: The high elevated (ca. 1100 m) continental Kalahari Basin (KB) of southern Africa and the linked lower lying (ca. 400 m) Congo Basin (CB) of central Africa preserve in their interiors extensive sedimentary rock sequences and sediments that represent a unique record of the Phanerozoic geodynamic and climatic evolution of sub-Saharan Africa. In this thesis, field observations and new borehole data from the Democratic Republic of Congo (DRC) and Botswana are integrated with new paleontology and geochronology to present a substantially revised stratigraphy for the CB, and south-central Africa in general. This work also introduces a new multiphase model for the subsidence and uplift history of the CB, and improves correlations with the Cape-Karoo Basin (CKB) of South Africa and the Paraná Basin (PB) of south-east Brazil. Four deep boreholes, each between 2 and 4.5 km deep, drilled in the centre of the CB in the 1950’s and 1970’s are re-examined together with the colonial literature (in French) and available seismic data. This stratigraphic and basin analysis is complemented with new U-Pb dates of detrital zircons from core-samples of two of the boreholes (Samba and Dekese), as well as from samples collected during field work in the Kwango region of the south-west DRC. This work, for the first time, constrains the maximum ages and source provenances of the successions in the CB. Following the Pan African orogens (ca. 650-530 Ma), extensive sequences of red beds were deposited by regional paleocurrents to the south. These are now best preserved (1 km thick) along the West Congo, Oubanguides, and Lufilian Belts surrounding the CB. Overlying a hiatus that represents most of the early-Paleozoic, is a 1 to 3 km thick succession of easterly derived glacial, and then continental sequences of the Karoo Supergroup. This succession records the first main episode of subsidence [10-15 m/Ma], interrupted by a phase of uplift that is likely related to far-field intracontinental deformation within Gondwana supercontinent during the Variscan and Cape Fold orogenies (ca. 250-330 Ma) at its peripheries. Detrital zircons from the lower Karoo diamictites are dated at 1.85-2.05 Ga and 1.37- 1.42 Ga, and thus sourced from Paleoproterozoic (Eburnean) and mid-Mesoproterozoic (Kibaran type-I) basement rocks in Uganda and Tanzania. Zircons from all the other successions in the CB date predominantly at 950-1050 Ma and 500-800 Ma. These are derived from sediment recycling of late-Mesoproterozoic (Kibaran type-II) and late- Neoproterozoic (Pan African) sources in the Central African Republic (CAR) and Chad. A distinct unconformity across the Karoo Supergroup in the CB is overlain by 500- 1000 m Jurassic-Cretaceous sequences, here named the Congo Supergroup. During initial rapid subsidence [10-50 m/Ma], late-Jurassic (Kimmeridgian) shallow marine to continental sedimentation attests to a short transgression of proto-Indian Ocean waters into the northern CB (at 160 m above present day sea-level), succeeded by widespread deposition of aeolian dunes that extend from the southern CB to the PB in South America. The youngest zircons from these aeolian sediments in the CB date at 190 Ma and 240-290 Ma, and most likely indicate the influence of extensive silicic volcanic ash derived from the proto-Andes along the south-western margin of Gondwana. Two superimposed mid-Cretaceous (Albian-Cenomanian) lacustrine sequences in the central CB record a succeeding, slower [10-15 m/Ma], phase of basin subsidence during the opening of the South Atlantic (ca. 85-135 Ma). These Cretaceous sequences are in turn truncated by another regional peneplanation surface covered by Cenozoic (Eocene) silcretized sands and alluviums of the Kalahari Group, only 50-250 m thick in the centre of the CB. Southward, on top of the Kalahari Plateau in the central desert region of north-west Botswana, new boreholes intercepted laterally equivalent condensed lacustrine carbonates and calcretes (20-50 m thick) covered by sands. These terrestrial sequences are key archives of late-Mesozoic – Cenozoic paleo-climate changes, yet they remain stratigraphically unresolved. This new analysis of the Phanerozoic continental basins of south-central Africa and their equivalents in South America, opens a fresh continental-scale window into how West Gondwana break-up and concomitant epeirogenic uplifts of Kalahari (>2 km) and Congo (>200 m) are linked to interactions between the lithosphere and mantle geodynamics, and how these processes likely affected global climate changes.
- Full Text:
- Date Issued: 2013
The separation of platinum and gold from an industrial feed solution
- Authors: Louw, Talana
- Date: 2008
- Subjects: Platinum -- Separation , Gold , Separation -- Technology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10400 , http://hdl.handle.net/10948/731 , Platinum -- Separation , Gold , Separation -- Technology
- Description: In this thesis, the aim was to develop resins which are platinum and gold specific to be utilized for the early removal of these metals from the industrial feed. Efforts were therefore directed towards the synthesis of silica based resins with active centra which were designed for platinum and gold specificity respectively. The large chlorometallate ions in the feed stream were characterized in terms of physical parameters relevant to phase distribution namely distortability (RD), charge density, softness (σ) etc. Matching cations for each of the types were investigated. In order to attempt the design of platinum specific resins different structural amines were used to aminate the silicone precursor and subsequently to fix these onto the silica framework. Two different solvents i.e. alcohol and dmf were used for this process, resulting in two sets of resins with different properties. For gold specific resins, various polyethers were attached to a different type of silicone precursor, which was attached to the silica framework. The design was based on previous experience with these ions with reference to their behaviour towards different types of cations. The platinum species PtCl6 2- and PtCl4 2-, the gold species AuCl4 -, as well as the most important contaminants in the feed stream were typified bearing in mind size, charge, charge density and distortability. Different types of cationic centra having differences in charge density, stereochemical crowding and extent of hydrophobicity were synthesized and tested both as solvent extractants (where possible) and silica based resins. The results indicated that partly screened secondary ammonium cationic resin species, which could be regarded as “intermediate”, proved to be satisfactory both in their high percentage extraction for PtCl4 2- and rejection of contaminants like chlororhodates, chloroiridates(III) and FeCl4 -. It was, however, necessary to work at a redox potential where iridium(IV) in the form of IrCl6 2- is absent. Various 2-aminoalkane resins were prepared with variation in the length of alkane group and synthesized in the two different solvents. The latter resulted in two sets of resins with different compactness also having significantly different properties with reference to platinum specificity, HCl effect and stripping potential. The 2- aminobutane and 2-aminoheptane resins both proved to be very satisfactory platinum specific resins with respect to selectivity, platinum capacity and stripping potential. The various physical parameters could be utilized to accommodate the chemical behaviour. To obtain gold specific resins, experiments were performed with resins having oxygen-donor atoms which can readily be protonated to form onium type cations for example amides and ether oxygen atoms. In the case of the latter, various polyethers with a different number of ether groups (polyether groups linked by ethylene and propylene groups) and variations of hydrophobicity (by substitution) have also been studied. Linked to the polyether groups were alkane and aryl groups. Those having 8 to 10 ether groups and aromatic tail ends proved to be moderately successful in terms of gold capacity and sharp breakthrough curves of their columns, however, platinum could not be very effectively rejected.
- Full Text:
- Date Issued: 2008
- Authors: Louw, Talana
- Date: 2008
- Subjects: Platinum -- Separation , Gold , Separation -- Technology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10400 , http://hdl.handle.net/10948/731 , Platinum -- Separation , Gold , Separation -- Technology
- Description: In this thesis, the aim was to develop resins which are platinum and gold specific to be utilized for the early removal of these metals from the industrial feed. Efforts were therefore directed towards the synthesis of silica based resins with active centra which were designed for platinum and gold specificity respectively. The large chlorometallate ions in the feed stream were characterized in terms of physical parameters relevant to phase distribution namely distortability (RD), charge density, softness (σ) etc. Matching cations for each of the types were investigated. In order to attempt the design of platinum specific resins different structural amines were used to aminate the silicone precursor and subsequently to fix these onto the silica framework. Two different solvents i.e. alcohol and dmf were used for this process, resulting in two sets of resins with different properties. For gold specific resins, various polyethers were attached to a different type of silicone precursor, which was attached to the silica framework. The design was based on previous experience with these ions with reference to their behaviour towards different types of cations. The platinum species PtCl6 2- and PtCl4 2-, the gold species AuCl4 -, as well as the most important contaminants in the feed stream were typified bearing in mind size, charge, charge density and distortability. Different types of cationic centra having differences in charge density, stereochemical crowding and extent of hydrophobicity were synthesized and tested both as solvent extractants (where possible) and silica based resins. The results indicated that partly screened secondary ammonium cationic resin species, which could be regarded as “intermediate”, proved to be satisfactory both in their high percentage extraction for PtCl4 2- and rejection of contaminants like chlororhodates, chloroiridates(III) and FeCl4 -. It was, however, necessary to work at a redox potential where iridium(IV) in the form of IrCl6 2- is absent. Various 2-aminoalkane resins were prepared with variation in the length of alkane group and synthesized in the two different solvents. The latter resulted in two sets of resins with different compactness also having significantly different properties with reference to platinum specificity, HCl effect and stripping potential. The 2- aminobutane and 2-aminoheptane resins both proved to be very satisfactory platinum specific resins with respect to selectivity, platinum capacity and stripping potential. The various physical parameters could be utilized to accommodate the chemical behaviour. To obtain gold specific resins, experiments were performed with resins having oxygen-donor atoms which can readily be protonated to form onium type cations for example amides and ether oxygen atoms. In the case of the latter, various polyethers with a different number of ether groups (polyether groups linked by ethylene and propylene groups) and variations of hydrophobicity (by substitution) have also been studied. Linked to the polyether groups were alkane and aryl groups. Those having 8 to 10 ether groups and aromatic tail ends proved to be moderately successful in terms of gold capacity and sharp breakthrough curves of their columns, however, platinum could not be very effectively rejected.
- Full Text:
- Date Issued: 2008
Freshwater invertebrate assemblages of the Eastern Cape Karoo region (South Africa) earmarked for shale gas exploration
- Authors: Mabidi, Annah
- Date: 2017
- Subjects: Invertebrates -- South Africa -- Karoo , Shale gas -- Conservation -- South Africa -- Karoo Freshwater animals -- South Africa -- Karoo Stream ecology -- South Africa -- Karoo
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/13713 , vital:27301
- Description: The Eastern Cape Karoo region is semi-arid with highly variable rainfall. This variability in rainfall sustains a mosaic of surface freshwater bodies that range from permanently to temporarily inundated. These waterbodies provide habitats for diverse invertebrate assemblages. The imminent hydraulic fracturing for shale gas has a potential to modify the water regime, with particular risk of salinisation. Accumulation of salts in freshwater wetlands results in loss of biodiversity, as invertebrate species shift from salt intolerant to salt tolerant species. This study therefore aims to expand on existing knowledge and provide new information on the distribution, diversity and structure of macroinvertebrate assemblages associated with various freshwater bodies in the region prior to shale gas exploration. Limnological and ecological aspects of thirty-three waterbodies (rivers, dams and depression wetlands) were investigated between November 2014 and March 2016. An experimental study on the effects of salinity on hatching success of branchiopod resting eggs was also included in the research. Rivers were characterised by high conductivity and depression wetlands by high turbidity, while dams had relatively higher pH than the other two waterbody types. In terms of global phosphorus interpretation guidelines, the results indicate that freshwater systems in the study region are predominantly eutrophic, indicating that agricultural run-off, particularly from livestock dung (goats, cattle and sheep), is an important source of phosphorus in the freshwater systems studied. Our results revealed new distribution records for branchiopod crustaceans in the Eastern Cape region, including the first record of Laevicaudata. Results showed that the sampled variables were unable to explain the variation in physicochemistry and invertebrate assemblage of several sites. Waterbody type, whether a depression wetland or a river, was the only factor that consistently showed an effect on the composition of both physicochemical data and invertebrate data. Depression wetlands ranged from completely bare to being extensively covered by macrophytes. Therefore, the effect of macrophyte cover in structuring macroinvertebrate assemblages was the focus of further investigation. The results indicated that the macrophyte cover gradient had little influence on the structure of the invertebrate assemblages in the depression wetlands, while only the presence/absence of vegetation significantly influenced the structure of the invertebrate assemblages in these systems. Surface area, dissolved inorganic nitrogen and pelagic chlorophyll-a were the environmental variables that best explained the variation in the macroinvertebrate assemblages among the sites. However, the differences in macroinvertebrate richness, abundance and distribution patterns among sites were only weakly influenced by local and regional environmental factors. These findings suggest that invertebrate in temporary wetland systems are adapted to the highly variable nature of temporary habitats, thus the influence of local variables is negligible. Results of the experimental study, on the effect of salinity on hatching success of branchiopod resting eggs, revealed that hatchling abundance and diversity of large branchiopods was significantly reduced at salinities of 2.5 g L−1 and above. Salt-tolerant taxa such as Copepoda and Ostracoda were the only ones to emerge in the highest salinity of 10 g L−1. Thus, should the region continue to experience increasing aridity and possible shale gas development, which all aggravate the salinisation problem, severe loss of branchiopod diversity (Anostraca, Laevicaudata, Spinicaudata and Notostraca) is likely to occur. This may lead to considerable decline in invertebrate diversity in the region, with cascading effects on food webs and ecosystem functions. The findings of this study can potentially be used in comparative studies on wetland invertebrate ecology in other semi-arid regions and in the formulation of policy and strategies for biodiversity conservation.
- Full Text:
- Date Issued: 2017
- Authors: Mabidi, Annah
- Date: 2017
- Subjects: Invertebrates -- South Africa -- Karoo , Shale gas -- Conservation -- South Africa -- Karoo Freshwater animals -- South Africa -- Karoo Stream ecology -- South Africa -- Karoo
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/13713 , vital:27301
- Description: The Eastern Cape Karoo region is semi-arid with highly variable rainfall. This variability in rainfall sustains a mosaic of surface freshwater bodies that range from permanently to temporarily inundated. These waterbodies provide habitats for diverse invertebrate assemblages. The imminent hydraulic fracturing for shale gas has a potential to modify the water regime, with particular risk of salinisation. Accumulation of salts in freshwater wetlands results in loss of biodiversity, as invertebrate species shift from salt intolerant to salt tolerant species. This study therefore aims to expand on existing knowledge and provide new information on the distribution, diversity and structure of macroinvertebrate assemblages associated with various freshwater bodies in the region prior to shale gas exploration. Limnological and ecological aspects of thirty-three waterbodies (rivers, dams and depression wetlands) were investigated between November 2014 and March 2016. An experimental study on the effects of salinity on hatching success of branchiopod resting eggs was also included in the research. Rivers were characterised by high conductivity and depression wetlands by high turbidity, while dams had relatively higher pH than the other two waterbody types. In terms of global phosphorus interpretation guidelines, the results indicate that freshwater systems in the study region are predominantly eutrophic, indicating that agricultural run-off, particularly from livestock dung (goats, cattle and sheep), is an important source of phosphorus in the freshwater systems studied. Our results revealed new distribution records for branchiopod crustaceans in the Eastern Cape region, including the first record of Laevicaudata. Results showed that the sampled variables were unable to explain the variation in physicochemistry and invertebrate assemblage of several sites. Waterbody type, whether a depression wetland or a river, was the only factor that consistently showed an effect on the composition of both physicochemical data and invertebrate data. Depression wetlands ranged from completely bare to being extensively covered by macrophytes. Therefore, the effect of macrophyte cover in structuring macroinvertebrate assemblages was the focus of further investigation. The results indicated that the macrophyte cover gradient had little influence on the structure of the invertebrate assemblages in the depression wetlands, while only the presence/absence of vegetation significantly influenced the structure of the invertebrate assemblages in these systems. Surface area, dissolved inorganic nitrogen and pelagic chlorophyll-a were the environmental variables that best explained the variation in the macroinvertebrate assemblages among the sites. However, the differences in macroinvertebrate richness, abundance and distribution patterns among sites were only weakly influenced by local and regional environmental factors. These findings suggest that invertebrate in temporary wetland systems are adapted to the highly variable nature of temporary habitats, thus the influence of local variables is negligible. Results of the experimental study, on the effect of salinity on hatching success of branchiopod resting eggs, revealed that hatchling abundance and diversity of large branchiopods was significantly reduced at salinities of 2.5 g L−1 and above. Salt-tolerant taxa such as Copepoda and Ostracoda were the only ones to emerge in the highest salinity of 10 g L−1. Thus, should the region continue to experience increasing aridity and possible shale gas development, which all aggravate the salinisation problem, severe loss of branchiopod diversity (Anostraca, Laevicaudata, Spinicaudata and Notostraca) is likely to occur. This may lead to considerable decline in invertebrate diversity in the region, with cascading effects on food webs and ecosystem functions. The findings of this study can potentially be used in comparative studies on wetland invertebrate ecology in other semi-arid regions and in the formulation of policy and strategies for biodiversity conservation.
- Full Text:
- Date Issued: 2017
Investigation of device and performance parameters of photovoltaic devices
- Macabebe, Erees Queen Barrido
- Authors: Macabebe, Erees Queen Barrido
- Date: 2009
- Subjects: Photovoltaic cells , Solar cells , Photovoltaic power systems , Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10538 , http://hdl.handle.net/10948/1003 , http://hdl.handle.net/10948/d1012890 , Photovoltaic cells , Solar cells , Photovoltaic power systems , Photovoltaic power generation
- Description: In order to investigate the influence of parasitic resistances, saturation current and diode ideality factor on the performance of photovoltaic devices, parameter extraction routines employing the standard iteration (SI) method and the particle swarm optimization (PSO) method were developed to extract the series resistance, shunt resistance, saturation current and ideality factor from the I-V characteristics of solar cells and PV modules. The well-known one- and two-diode models were used to describe the behavior of the I-V curve and the parameters of the models were determined by approximation and iteration techniques. The SI and the PSO extraction programmes were used to assess the suitability of the one- and the two-diode solar cell models in describing the I-V characteristics of mono- and multicrystalline silicon solar cells, CISS- and CIGSS-based solar cells. This exercise revealed that the two-diode model provides more information regarding the different processes involved in solar cell operation. Between the two methods developed, the PSO method is faster, yielded fitted curves with lower standard deviation of residuals and, therefore, was the preferred extraction method. The PSO method was then used to extract the device parameters of CISS-based solar cells with the CISS layer selenized under different selenization process conditions and CIGSS-based solar cells with varying i-ZnO layer thickness. For the CISS-based solar cells, the detrimental effect of parasitic resistances on device performance increased when the temperature and duration of the selenization process was increased. For the CIGSS-based devices, photogeneration improved with increasing i-ZnO layer thickness. At high forward bias, bulk recombination and/or tunneling-assisted recombination were the dominant processes affecting the I-V characteristics of the devices. v Lastly, device and performance parameters of mono-, multicrystalline silicon and CIS modules derived from I-V characteristics obtained under dark and illuminated conditions were analyzed considering the effects of temperature on the performance of the devices. Results showed that the effects of parasitic resistances are greater under illumination and, under outdoor conditions, the values further declined due to increasing temperature. The saturation current and ideality factor also increased under outdoor conditions which suggest increased recombination and, coupled with the adverse effects of parasitic resistances, these factors result in lower FF and lower maximum power point. Analysis performed on crystalline silicon and thin film devices utilized in this study revealed that parameter extraction from I-V characteristics of photovoltaic devices and, in particular, the implementation of PSO in solar cell device parameter extraction developed in this work is a useful characterization technique.
- Full Text:
- Date Issued: 2009
- Authors: Macabebe, Erees Queen Barrido
- Date: 2009
- Subjects: Photovoltaic cells , Solar cells , Photovoltaic power systems , Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10538 , http://hdl.handle.net/10948/1003 , http://hdl.handle.net/10948/d1012890 , Photovoltaic cells , Solar cells , Photovoltaic power systems , Photovoltaic power generation
- Description: In order to investigate the influence of parasitic resistances, saturation current and diode ideality factor on the performance of photovoltaic devices, parameter extraction routines employing the standard iteration (SI) method and the particle swarm optimization (PSO) method were developed to extract the series resistance, shunt resistance, saturation current and ideality factor from the I-V characteristics of solar cells and PV modules. The well-known one- and two-diode models were used to describe the behavior of the I-V curve and the parameters of the models were determined by approximation and iteration techniques. The SI and the PSO extraction programmes were used to assess the suitability of the one- and the two-diode solar cell models in describing the I-V characteristics of mono- and multicrystalline silicon solar cells, CISS- and CIGSS-based solar cells. This exercise revealed that the two-diode model provides more information regarding the different processes involved in solar cell operation. Between the two methods developed, the PSO method is faster, yielded fitted curves with lower standard deviation of residuals and, therefore, was the preferred extraction method. The PSO method was then used to extract the device parameters of CISS-based solar cells with the CISS layer selenized under different selenization process conditions and CIGSS-based solar cells with varying i-ZnO layer thickness. For the CISS-based solar cells, the detrimental effect of parasitic resistances on device performance increased when the temperature and duration of the selenization process was increased. For the CIGSS-based devices, photogeneration improved with increasing i-ZnO layer thickness. At high forward bias, bulk recombination and/or tunneling-assisted recombination were the dominant processes affecting the I-V characteristics of the devices. v Lastly, device and performance parameters of mono-, multicrystalline silicon and CIS modules derived from I-V characteristics obtained under dark and illuminated conditions were analyzed considering the effects of temperature on the performance of the devices. Results showed that the effects of parasitic resistances are greater under illumination and, under outdoor conditions, the values further declined due to increasing temperature. The saturation current and ideality factor also increased under outdoor conditions which suggest increased recombination and, coupled with the adverse effects of parasitic resistances, these factors result in lower FF and lower maximum power point. Analysis performed on crystalline silicon and thin film devices utilized in this study revealed that parameter extraction from I-V characteristics of photovoltaic devices and, in particular, the implementation of PSO in solar cell device parameter extraction developed in this work is a useful characterization technique.
- Full Text:
- Date Issued: 2009
Exploring the linkages between biodiversity conservation and ecotourism in protected areas
- Authors: Maciejewski, Kristine
- Date: 2012
- Subjects: Biodiversity conservation , Ecotourism
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10709 , http://hdl.handle.net/10948/d1011033 , Biodiversity conservation , Ecotourism
- Description: The prospect of using ecotourism to add value to conservation initiatives has frequently been stated. However, there is a general lack of information on the costs and benefits of biodiversity and its management, and how this can be influenced by the ecotourism industry. This study seeks to explore the value of biodiversity from the perspective of ecotourism in a hierarchical series of studies that move from the biome-level perspective down to the value of juveniles in ecotourism. Ecotourism plays a significant role in the establishment and management of Private Protected Areas (PPAs) and hence the opportunity to be added to the conservation estate. The financial opportunity to be found in ‘big five’ areas had led to an uneven biome coverage of PPAs which has resulted in the over-representation of certain areas and a skewed contribution towards national conservation targets. The landscape-use of PPAs have indicated that ecotourism operators are largely driven to achieve successful game-viewing sightings which has influenced management and affected the landscape use of PPAs, the stocking rate of species, the introduction of extralimital species, and management of flagship species. These management decisions are based on anecdotal sources and have been made at the expense of biodiversity and therefore apparent conflict exists between ecotourism and conservation objectives. This is based on lack of information: ecotourism operators, despite the large area they protect, have not realised their potential to contribute to conservation. It is therefore important to develop policy and incentives to motivate the establishment of PPAs in areas of high conservation significance in order to contribute to national conservation targets. Ecotourism should be used as a solution to provide important insights into tourist preferences which contribute to the larger debate of how to establish a balance between managing animal populations to ensure tourist satisfaction while supporting conservation. To ensure sustainability of PPAs, it is strongly recommended to manage PPAs more intensively with regards to PPA size, species stocking rates and landscape use. The presence of juveniles at an animal sighting significantly contributes to tourist satisfaction which suggests that the loss of juveniles may reduce the attraction. This is used to provide recommendations that using contraception to control elephant population numbers should be applied with caution as a management tool as it may be counterproductive by negatively impacting ecotourism. The findings from this study not only contribute to the conservation of biodiversity through the use of ecotourism, but will also ensure sustainability of the ecotourism industry and build capacity for sustainable living.
- Full Text:
- Date Issued: 2012
- Authors: Maciejewski, Kristine
- Date: 2012
- Subjects: Biodiversity conservation , Ecotourism
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10709 , http://hdl.handle.net/10948/d1011033 , Biodiversity conservation , Ecotourism
- Description: The prospect of using ecotourism to add value to conservation initiatives has frequently been stated. However, there is a general lack of information on the costs and benefits of biodiversity and its management, and how this can be influenced by the ecotourism industry. This study seeks to explore the value of biodiversity from the perspective of ecotourism in a hierarchical series of studies that move from the biome-level perspective down to the value of juveniles in ecotourism. Ecotourism plays a significant role in the establishment and management of Private Protected Areas (PPAs) and hence the opportunity to be added to the conservation estate. The financial opportunity to be found in ‘big five’ areas had led to an uneven biome coverage of PPAs which has resulted in the over-representation of certain areas and a skewed contribution towards national conservation targets. The landscape-use of PPAs have indicated that ecotourism operators are largely driven to achieve successful game-viewing sightings which has influenced management and affected the landscape use of PPAs, the stocking rate of species, the introduction of extralimital species, and management of flagship species. These management decisions are based on anecdotal sources and have been made at the expense of biodiversity and therefore apparent conflict exists between ecotourism and conservation objectives. This is based on lack of information: ecotourism operators, despite the large area they protect, have not realised their potential to contribute to conservation. It is therefore important to develop policy and incentives to motivate the establishment of PPAs in areas of high conservation significance in order to contribute to national conservation targets. Ecotourism should be used as a solution to provide important insights into tourist preferences which contribute to the larger debate of how to establish a balance between managing animal populations to ensure tourist satisfaction while supporting conservation. To ensure sustainability of PPAs, it is strongly recommended to manage PPAs more intensively with regards to PPA size, species stocking rates and landscape use. The presence of juveniles at an animal sighting significantly contributes to tourist satisfaction which suggests that the loss of juveniles may reduce the attraction. This is used to provide recommendations that using contraception to control elephant population numbers should be applied with caution as a management tool as it may be counterproductive by negatively impacting ecotourism. The findings from this study not only contribute to the conservation of biodiversity through the use of ecotourism, but will also ensure sustainability of the ecotourism industry and build capacity for sustainable living.
- Full Text:
- Date Issued: 2012