- Title
- Microalgae as indicators of environmental change in the St Lucia estuarine system
- Creator
- Nunes, Monique
- Subject
- Microalgae -- South Africa -- St Lucia estuarine
- Date Issued
- 2019
- Date
- 2019
- Type
- Thesis
- Type
- Doctoral
- Type
- DPhil
- Identifier
- http://hdl.handle.net/10948/31165
- Identifier
- vital:31333
- Description
- The St Lucia system represents 56% of the estuarine habitat area in South Africa. This dynamic estuarine lake responds to a complex interaction of climatic and anthropogenic drivers. There has been a long history of human interventions and the extended drought (2002-2012) led to major changes. In 1952, the inlet shared between the estuarine system and the Mfolozi River was artificially separated, which significantly reduced freshwater inflow. The systems were separated because of the silt load from the expanding agricultural activities in the Mfolozi River catchment. The drought prompted a critical review of re-establishing the historic connection, and in July 2012, the beach spillway was excavated marking the start of restoring connectivity. Increased rainfall coupled with the partial re-connection with the agriculturally-impacted Mfolozi River shifted the St Lucia estuarine system to a new wet phase. This study investigated the microalgal dynamics of the estuarine system as it transitioned to this new wet phase. Results showed that the phytoplankton and microphytobenthos (MPB) biomass was low (< 5 ug l-1 and < 60 mg m-2 respectively) throughout the system due to nutrient and light availability, water residence time and sediment type. The increased freshwater inflow from the Mfolozi River was limited to the Narrows and available nutrients promoted the growth of cyanobacteria and dinophytes in the water column. Of interest was the presence of the potentially harmful algal species Prorocentrum minimum. A weekly study investigated the relationship between freshwater inflow, phytoplankton succession and the introduction and persistence of harmful microalgal species in the lower reaches. The increased freshwater inflow received from the Mfolozi River has led to a system in a constant state of flux. The changes in salinity, light availability and water residence time, shifted the phytoplankton functional group structure to one where chlorophytes and euglenoids were dominant. The persistence of the nutrient tolerant euglenoids highlighted the influence of the nutrient-enriched freshwater inflow on the phytoplankton functional groups. However, the relative abundance of all functional groups remained low due to the rapid change in environmental conditions. The next step was to test the use of an artificial substrate as a monitoring method to detect nutrient induced change. Findings from the 28-day study showed that epilithic diatom communities growing on glass slides were good indicators of nutrient enrichment. The epilithic algal biomass increased significantly from 1.5 mg m-2 (Day 14) to 6 mg m-2 (Day 21), following peak river inflow. In contrast, the phytoplankton and MPB showed no discernible increase in biomass. Epilithic diatom community diversity, richness and evenness scores declined due to the increasing relative abundance of a single nutrient tolerant species, Cocconeis placentula var. euglypta. The use of diatoms as indicators of change depends on the accuracy of identification to species level. This can be a slow process requiring a high level of taxonomic expertise. Considering that molecular phylogenetic methods are readily used to produce a reliable taxonomic list, the suitability of DNA metabarcoding for diatom monitoring in the St Lucia Estuary was tested. Comparisons between the molecular and morphological method indicated that the diatom taxonomic composition was similar at 9 to 27% for genus level and 2 to 9% at species level. The low taxonomic similarity was related to the large number of unclassified DNA representative sequences included in the molecular inventory due to the incomplete DNA library database. However, the available operational taxonomic units (OTUs) from the molecular method did provide an effective alternative to determine the relevant community diversity estimates required for the application of the South African Estuarine Health Index (EHI). This research has highlighted the dynamic nature of the St Lucia estuarine system and the effectiveness of the microalgal communities to differentiate between the cyclical climatic phases and anthropogenic stressors such as nutrient enrichment.
- Format
- xiv, 159 leaves
- Format
- Publisher
- Nelson Mandela University
- Publisher
- Faculty of Science
- Language
- English
- Rights
- Nelson Mandela University
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| Thumbnail | File | Description | Size | Format | |||
|---|---|---|---|---|---|---|---|
| View Details Download | SOURCE1 | Monique Nunes.pdf | 3 MB | Adobe Acrobat PDF | View Details Download |