- Title
- JMS: an open source workflow management system and web-based cluster front-end for high performance computing
- Creator
- Brown, David K
- Creator
- Penkler, David L
- Creator
- Musyoka, Thommas M
- Creator
- Tastan Bishop, Özlem
- Date Issued
- 2015
- Date
- 2015
- Type
- text
- Type
- article
- Identifier
- http://hdl.handle.net/10962/162880
- Identifier
- vital:40993
- Identifier
- doi:10.1371/journal.pone.0134273
- Description
- Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality.
- Format
- 26 page
- Format
- Language
- English
- Relation
- PLOSOne
- Relation
- Brown, D.K., Penkler, D.L., Musyoka, T.M. and Bishop, Ö.T., 2015. JMS: an open source workflow management system and web-based cluster front-end for high performance computing. PLoS One, 10(8), p.e0134273
- Relation
- PLOSOne volume 10 number 8 1 25 2015 1932-6203
- Rights
- Publisher
- Rights
- Use of this resource is governed by the terms and conditions of the PLOSOne Terms of Use Statement ( https://www.plos.org/terms-of-use)
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Tastan Bishop, Ozlem (Prof)
RU Research Unit in Bioinformatics (RUBi)
RU Department of Biochemistry, Microbiology and Biotechnology
| Thumbnail | File | Description | Size | Format | |||
|---|---|---|---|---|---|---|---|
| View Details Download | SOURCE1 | JMS.PDF | 4 MB | Adobe Acrobat PDF | View Details Download |