Characterisation of antibacterial compounds produced by Pseudomonas spp. isolated from Hogsback wetlands, Eastern Cape, South Africa
- Authors: Obi, Akudo Odochi
- Date: 2017
- Subjects: Bacteriology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/15688 , vital:40507
- Description: With microbial pathogens developing resistance against currently existing antimicrobials, there is an earnest need to discover and develop new therapeutic compounds with unique and/or precise modes of action. Natural products have provided the inspiration for most of the active ingredients in medicines and thus are regarded as a potential screening resource lead for discovery of new drugs. Pseudomonads are ubiquitous, Gram-negative, motile bacteria that flourish and inhabit a diversity of environments. Literature has vastly revealed that some members of the genus Pseudomonas are capable of producing a plethora of biologically active metabolites and thus are regarded as “attractive” bacteria for testing as potential sources for new therapeutic compounds. In this regard, this study was undertaken with an aim to isolate and characterize antibacterial compounds produced by Pseudomonas species isolated from aquatic milieu of the Hogsback wetlands, Eastern Cape, South Africa. A total of 12 water samples were aseptically collected from Hogsback wetlands. To ascertain antimicrobial potential of the isolates, 9 test bacterial (sensitive) strains, namely Escherichia coli ATCC 3695, Vibrio fluvialis, Salmonella typhimurium, Salmonella enteritidis, Pseudomonas aeruginosa ATCC 27853, Escherichia coli (2), Listeria ivanovii, Listeria monocytogenes and Enterococcus faecalis ATCC 19433 were used for antimicrobial screening. A total of 500 presumptive Pseudomonas spp. were isolated and screened for the production of antibacterial compound through the Agar-well diffusion method. About 8percent of the presumptive Pseudomonas spp. produced compound with activity against the test bacteria and based on the levels of activity shown, three isolates coded as A53, Y55 and Y138 were selected and identified by 16S rDNA sequence analysis and The Basic Local Alignment Search Tool analysis revealed that the three isolates (A53, Y55 and Y138) belonged to the Pseudomonas genus. Using MEGA6 software, a molecular phylogenetic tree was constructed by Maximum Likelihood Method. The phylogenetic analysis by this method showed that all three isolate codes (A53, Y55 and Y138) formed the same clade with Pseudomonas viridiflava strain P3 (Accession number: AY972186) and Pseudomonas plecoglossicida strain P9 (Accession number: AY972231) at a high bootstrap value of 100percent. Isolate code A53 and Y55 also grouped together at a bootstrap value of 96percent. Factors affecting antibacterial compound production by the three isolates were elucidated. The effect of pH on the three isolates revealed that isolate code A53 and Y55 could produce antibacterial compounds over all pH ranges (pH 4-9), however, antibacterial production was produced optimally at acidic conditions (pH 4) and a less acidic-neutral condition (pH 6) respectively. Isolate Y138 showed optimal production at pH 5. The effect of temperature on all three isolates was studied at different temperatures ranging between 25°C-40°C. Study on effect of temperature variations on antibacterial production revealed that all three isolates are capable of growing and producing antibacterial compounds over all the different temperature ranges, however, maximum/optimum production was observed at temperature of 30°C. In order to establish the role of plasmids in antibacterial production, two curing agents; Sodium dodecyl sulfate (SDS) and Ethidium bromide under different sub-lethal concentrations (1 mg/ml -11mg/ml and 2.5 μg/ml- 125 μg/ml respectively) were used to cure the selected isolates. Plasmid DNA samples of A53, Y55 and Y138, were separated by electrophoresis on a 0.7percent (w/v) agarose. Agarose gel electrophoresis revealed that not all the concentrations used were effective in curing the plasmid. A Quick Load 1 kb Extend DNA ladder marker was used for determining the size of the plasmids. Isolate code A53 and Y138 had a plasmid size of 48.5 kb while isolate Y55 had a plasmid size of approximately 20 kb. Antibacterial activity by agar-well diffusion method after the curing process revealed that antibacterial production was not lost or prevented, but rather increased. Thus, it is suggested that the genes responsible for antibiotic production in this study were chromosomal-encoded and not plasmid-encoded. This study revealed that Hogsback wetlands may represent a previously unexplored environment/source of discovering novel and potent antibacterial compounds.
- Full Text:
- Date Issued: 2017
- Authors: Obi, Akudo Odochi
- Date: 2017
- Subjects: Bacteriology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/15688 , vital:40507
- Description: With microbial pathogens developing resistance against currently existing antimicrobials, there is an earnest need to discover and develop new therapeutic compounds with unique and/or precise modes of action. Natural products have provided the inspiration for most of the active ingredients in medicines and thus are regarded as a potential screening resource lead for discovery of new drugs. Pseudomonads are ubiquitous, Gram-negative, motile bacteria that flourish and inhabit a diversity of environments. Literature has vastly revealed that some members of the genus Pseudomonas are capable of producing a plethora of biologically active metabolites and thus are regarded as “attractive” bacteria for testing as potential sources for new therapeutic compounds. In this regard, this study was undertaken with an aim to isolate and characterize antibacterial compounds produced by Pseudomonas species isolated from aquatic milieu of the Hogsback wetlands, Eastern Cape, South Africa. A total of 12 water samples were aseptically collected from Hogsback wetlands. To ascertain antimicrobial potential of the isolates, 9 test bacterial (sensitive) strains, namely Escherichia coli ATCC 3695, Vibrio fluvialis, Salmonella typhimurium, Salmonella enteritidis, Pseudomonas aeruginosa ATCC 27853, Escherichia coli (2), Listeria ivanovii, Listeria monocytogenes and Enterococcus faecalis ATCC 19433 were used for antimicrobial screening. A total of 500 presumptive Pseudomonas spp. were isolated and screened for the production of antibacterial compound through the Agar-well diffusion method. About 8percent of the presumptive Pseudomonas spp. produced compound with activity against the test bacteria and based on the levels of activity shown, three isolates coded as A53, Y55 and Y138 were selected and identified by 16S rDNA sequence analysis and The Basic Local Alignment Search Tool analysis revealed that the three isolates (A53, Y55 and Y138) belonged to the Pseudomonas genus. Using MEGA6 software, a molecular phylogenetic tree was constructed by Maximum Likelihood Method. The phylogenetic analysis by this method showed that all three isolate codes (A53, Y55 and Y138) formed the same clade with Pseudomonas viridiflava strain P3 (Accession number: AY972186) and Pseudomonas plecoglossicida strain P9 (Accession number: AY972231) at a high bootstrap value of 100percent. Isolate code A53 and Y55 also grouped together at a bootstrap value of 96percent. Factors affecting antibacterial compound production by the three isolates were elucidated. The effect of pH on the three isolates revealed that isolate code A53 and Y55 could produce antibacterial compounds over all pH ranges (pH 4-9), however, antibacterial production was produced optimally at acidic conditions (pH 4) and a less acidic-neutral condition (pH 6) respectively. Isolate Y138 showed optimal production at pH 5. The effect of temperature on all three isolates was studied at different temperatures ranging between 25°C-40°C. Study on effect of temperature variations on antibacterial production revealed that all three isolates are capable of growing and producing antibacterial compounds over all the different temperature ranges, however, maximum/optimum production was observed at temperature of 30°C. In order to establish the role of plasmids in antibacterial production, two curing agents; Sodium dodecyl sulfate (SDS) and Ethidium bromide under different sub-lethal concentrations (1 mg/ml -11mg/ml and 2.5 μg/ml- 125 μg/ml respectively) were used to cure the selected isolates. Plasmid DNA samples of A53, Y55 and Y138, were separated by electrophoresis on a 0.7percent (w/v) agarose. Agarose gel electrophoresis revealed that not all the concentrations used were effective in curing the plasmid. A Quick Load 1 kb Extend DNA ladder marker was used for determining the size of the plasmids. Isolate code A53 and Y138 had a plasmid size of 48.5 kb while isolate Y55 had a plasmid size of approximately 20 kb. Antibacterial activity by agar-well diffusion method after the curing process revealed that antibacterial production was not lost or prevented, but rather increased. Thus, it is suggested that the genes responsible for antibiotic production in this study were chromosomal-encoded and not plasmid-encoded. This study revealed that Hogsback wetlands may represent a previously unexplored environment/source of discovering novel and potent antibacterial compounds.
- Full Text:
- Date Issued: 2017
Characterization of maize biochars, their effects on soils, early maize growth and effectiveness of fertilizers
- Authors: Pinkson, Sibusisiwe
- Date: 2017
- Subjects: Soil fertility Crops and soils Biochar
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9974 , vital:35211
- Description: The use of maize biochar in smallholder cropping systems of the Eastern Cape (EC) Province could be a strategy that helps mitigate a common challenge such as poor soil fertility in maize productivity. The current study investigated the following: a) comparison of maize biochars derived from the drum and pit kiln pyrolytic systems as soil amendments; b) effects of maize biochars on soil acidity and extractable nutrients of three arable soil types of the EC Province; c) effects of maize biochars on early maize growth and nutrient uptake; d) effect of maize biochars on the effectiveness of organic and inorganic fertilizers for improved soil quality and maize growth. Maize biochars were produced from two pyrolytic systems namely the pit and drum kiln, each maize biochar type was analyzed with respect to its chemical and physical characteristics to investigate its potential as a soil amendment. Both pyrolytic systems were monitored to identify optimum pyrolytic temperatures reached by each process. Observed peak pyrolytic temperature were 300 °C and 500 °C for the pit and drum pyrolytic systems respectively. Both maize biochar types were alkaline in nature with pH values of 8.36 (H2O) and 7.45 (KCl) and 8.95 (H2O) and 7.82 (KCl) for pit and drum biochar respectively. Electrical conductivity (Ec) of drum biochar was 199 mS /m and that of pit biochar 186 mS /m. Generally, there were no differences in the chemical compositions of the two biochar types. However, in most analysis drum biochar gave higher values in nutrient composition compared to the pit biochar. Moreover, according to SEM analysis both biochar materials consisted of an increase in pore size distribution compared to the original feedstock material. In addition, an increase in nutrient composition in the two biochar types compared to the original feedstock was also observed. In an incubation experiment, potential effects of the two maize biochar types derived from the pit and drum kiln pyrolytic systems on soil acidity and nutrients were investigated on three arable soil types of the EC Province. Three soil types investigated were obtained from the University of Fort Hare (UFH), Phandulwazi (PND) and Msobomvu (MSV). The UFH soil was a sandy loam of the Oakleaf form or Eutric Cambisol, the PND soil was a sandy loam over sandy clay a Haplic Luvisol, while the MSV soil was a clay loam of Westleigh form a Ferric luvisol. Both maize biochar types significantly (p< 0.05) increased soil pH of the three soil types in the incubation study from an average of 4.68- 7.5. Soil pH improvement was in the following order pit biochar> drum biochar> control. Also, the two maize biochar types significantly (p< 0.05) increased the release of cations namely Ca, Mg and Na however, some decrease in nutrient concentrations were observed due to increase in pH levels at the later stage of the study. Biochar incorporation increased extractable P release from 30- 40 mg P/kg to an average range of between 120- 160 mg P/kg across all soil types. A glasshouse study was also conducted investigating the effect of different biochar rates of the two maize biochar types used in the previous studies on early maize growth and nutrient uptake, same soil types were used as those in the incubation study. Biochar was applied at application rates of 0, 100, 200 and 300 kg C/ha of biochar. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. Generally, a significant increase in maize growth parameters such as plant height, stem girth, number of leaves and leaf area increased after biochar additions compared to the control. Both biochars significantly improved maize seedling growth at an application rate of 200 kg C/haHowever, the two biochar types displayed varying impacts on maize growth due to influence of soil type and biochar application rates. Nutrient- uptake of Ca, P, Na and Mg showed to improve at an application rate of 200 kg C/ha for both biochar types showing a 50 percent increase compared to the control. Nutrient- uptake patterns for P, Ca, Mg and Na differed across all soil types, mainly due to changes in pH and Na levels which were influenced by increased biochar concentrations resulting in nutrient deficiency. Another glasshouse experiment aimed at investigating the effects on the two maize biochar types on influencing the effectiveness of both organic and inorganic fertilizers for improved early maize growth and soil productivity. Biochar was applied at an application rate of 400 kg C/ha of biochar, fertilizer was applied at application rates of 0, 10, 20, 30 and 40 kg N/ha and manure at 0, 10, 20, 30 and 40 t/ha respectively. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. In the 1st cycle, manure rate of 40 t/ha resulted in the highest plant height of maize seedlings grown in the glasshouse, biochar type also showed to influence plant height. After the 1st harvest Mg, K and P levels improved at 30 t/ha, Na at 20 t/ha and Ca 40 t/ha of manure. Plant height and stem girth improved at 30 kg N/ha of fertilizer, however, nutrient levels for Ca, K and Mg decreased after the 1st harvest, while Na levels increased. Nutrient uptake was the highest for Mg and Na at 40 kg N/ha while for Ca at 30 kg N/ha of fertilizer. During the 2nd cycle plant height was the highest at 30 t/ha of manure, and effect of manure rate was significant (p<0.05) for number of leaves, plant height and biomass. Whereas, manure rate and biochar type effect were insignificant (p>0.05) for pH, Ec and nutrient uptake changes. Maize seedling showed significant response to fertilizer 40 kg N/ha for most of the growth parameters measured (P<0.05), except for germination percentage. All treatments investigated had no effect on germination percentage. The two biochar types showed significant (p<0.05) effects on soil pH and Ec. Drum biochar was slightly better performing than pit biochar. Results obtained from the various studies suggests that maize biochars derived from the pit and drum pyrolytic systems are potential soil amendments in correcting soil acidity and nutrient deficiency in the EC Province. Both biochar types have shown abilities to improve early maize growth and effectiveness of fertilizers in maize based systems of the EC Province. However, some variations in soil fertility and early maize growth were observed as a result of the soil type response towards the two biochar applications. This could also have risen as a result of a number of factors such as the nutritional composition of biochar material, initial soil type chemical composition, biochar and fertilizer application rates and time taken or period to complete each study. Therefore, further experiments should be conducted to validate these results, preferable having longer periods of study, moreover, field experiments. In addition, investigations on potential feedstock materials such as animal wastes used as biochar in the EC Province can be conducted.
- Full Text:
- Date Issued: 2017
- Authors: Pinkson, Sibusisiwe
- Date: 2017
- Subjects: Soil fertility Crops and soils Biochar
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9974 , vital:35211
- Description: The use of maize biochar in smallholder cropping systems of the Eastern Cape (EC) Province could be a strategy that helps mitigate a common challenge such as poor soil fertility in maize productivity. The current study investigated the following: a) comparison of maize biochars derived from the drum and pit kiln pyrolytic systems as soil amendments; b) effects of maize biochars on soil acidity and extractable nutrients of three arable soil types of the EC Province; c) effects of maize biochars on early maize growth and nutrient uptake; d) effect of maize biochars on the effectiveness of organic and inorganic fertilizers for improved soil quality and maize growth. Maize biochars were produced from two pyrolytic systems namely the pit and drum kiln, each maize biochar type was analyzed with respect to its chemical and physical characteristics to investigate its potential as a soil amendment. Both pyrolytic systems were monitored to identify optimum pyrolytic temperatures reached by each process. Observed peak pyrolytic temperature were 300 °C and 500 °C for the pit and drum pyrolytic systems respectively. Both maize biochar types were alkaline in nature with pH values of 8.36 (H2O) and 7.45 (KCl) and 8.95 (H2O) and 7.82 (KCl) for pit and drum biochar respectively. Electrical conductivity (Ec) of drum biochar was 199 mS /m and that of pit biochar 186 mS /m. Generally, there were no differences in the chemical compositions of the two biochar types. However, in most analysis drum biochar gave higher values in nutrient composition compared to the pit biochar. Moreover, according to SEM analysis both biochar materials consisted of an increase in pore size distribution compared to the original feedstock material. In addition, an increase in nutrient composition in the two biochar types compared to the original feedstock was also observed. In an incubation experiment, potential effects of the two maize biochar types derived from the pit and drum kiln pyrolytic systems on soil acidity and nutrients were investigated on three arable soil types of the EC Province. Three soil types investigated were obtained from the University of Fort Hare (UFH), Phandulwazi (PND) and Msobomvu (MSV). The UFH soil was a sandy loam of the Oakleaf form or Eutric Cambisol, the PND soil was a sandy loam over sandy clay a Haplic Luvisol, while the MSV soil was a clay loam of Westleigh form a Ferric luvisol. Both maize biochar types significantly (p< 0.05) increased soil pH of the three soil types in the incubation study from an average of 4.68- 7.5. Soil pH improvement was in the following order pit biochar> drum biochar> control. Also, the two maize biochar types significantly (p< 0.05) increased the release of cations namely Ca, Mg and Na however, some decrease in nutrient concentrations were observed due to increase in pH levels at the later stage of the study. Biochar incorporation increased extractable P release from 30- 40 mg P/kg to an average range of between 120- 160 mg P/kg across all soil types. A glasshouse study was also conducted investigating the effect of different biochar rates of the two maize biochar types used in the previous studies on early maize growth and nutrient uptake, same soil types were used as those in the incubation study. Biochar was applied at application rates of 0, 100, 200 and 300 kg C/ha of biochar. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. Generally, a significant increase in maize growth parameters such as plant height, stem girth, number of leaves and leaf area increased after biochar additions compared to the control. Both biochars significantly improved maize seedling growth at an application rate of 200 kg C/haHowever, the two biochar types displayed varying impacts on maize growth due to influence of soil type and biochar application rates. Nutrient- uptake of Ca, P, Na and Mg showed to improve at an application rate of 200 kg C/ha for both biochar types showing a 50 percent increase compared to the control. Nutrient- uptake patterns for P, Ca, Mg and Na differed across all soil types, mainly due to changes in pH and Na levels which were influenced by increased biochar concentrations resulting in nutrient deficiency. Another glasshouse experiment aimed at investigating the effects on the two maize biochar types on influencing the effectiveness of both organic and inorganic fertilizers for improved early maize growth and soil productivity. Biochar was applied at an application rate of 400 kg C/ha of biochar, fertilizer was applied at application rates of 0, 10, 20, 30 and 40 kg N/ha and manure at 0, 10, 20, 30 and 40 t/ha respectively. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. In the 1st cycle, manure rate of 40 t/ha resulted in the highest plant height of maize seedlings grown in the glasshouse, biochar type also showed to influence plant height. After the 1st harvest Mg, K and P levels improved at 30 t/ha, Na at 20 t/ha and Ca 40 t/ha of manure. Plant height and stem girth improved at 30 kg N/ha of fertilizer, however, nutrient levels for Ca, K and Mg decreased after the 1st harvest, while Na levels increased. Nutrient uptake was the highest for Mg and Na at 40 kg N/ha while for Ca at 30 kg N/ha of fertilizer. During the 2nd cycle plant height was the highest at 30 t/ha of manure, and effect of manure rate was significant (p<0.05) for number of leaves, plant height and biomass. Whereas, manure rate and biochar type effect were insignificant (p>0.05) for pH, Ec and nutrient uptake changes. Maize seedling showed significant response to fertilizer 40 kg N/ha for most of the growth parameters measured (P<0.05), except for germination percentage. All treatments investigated had no effect on germination percentage. The two biochar types showed significant (p<0.05) effects on soil pH and Ec. Drum biochar was slightly better performing than pit biochar. Results obtained from the various studies suggests that maize biochars derived from the pit and drum pyrolytic systems are potential soil amendments in correcting soil acidity and nutrient deficiency in the EC Province. Both biochar types have shown abilities to improve early maize growth and effectiveness of fertilizers in maize based systems of the EC Province. However, some variations in soil fertility and early maize growth were observed as a result of the soil type response towards the two biochar applications. This could also have risen as a result of a number of factors such as the nutritional composition of biochar material, initial soil type chemical composition, biochar and fertilizer application rates and time taken or period to complete each study. Therefore, further experiments should be conducted to validate these results, preferable having longer periods of study, moreover, field experiments. In addition, investigations on potential feedstock materials such as animal wastes used as biochar in the EC Province can be conducted.
- Full Text:
- Date Issued: 2017
Density-dependent effects on body size, Philopatry, and dispersal in the Damaraland mole-rat (Fukomys damarensis)
- Authors: Finn, Kyle T
- Date: 2017
- Subjects: Fukomys damarensis , Fukomys damarensis -- Reproduction , Fukomys damarensis -- Growth , Rodents -- Reproduction -- South Africa -- Northern Cape , Rodents -- Growth -- South Africa -- Northern Cape , Rodent populations -- South Africa -- Northern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/50495 , vital:25993
- Description: Population density may exert changes in a variety of behavioural and physiological characters in animals. However, the effects of density-dependence and dispersal are poorly studied in subterranean rodents due to the difficulties involved in observing such effects in wild populations. Using the cooperative breeding Damaraland mole-rat (Fukomys damarensis) as a model species, the effects of population density on body size, growth rates, group size, recruitment, philopatry and dispersal were investigated at two sites (one with low density and one with high density) in the Northern Cape of South Africa. Group size, litter size and the probability of recapture were independent of population density. However, individual body size, recruitment, dispersal rate and dispersal distance were density-dependent. Individuals were significantly larger, juveniles exhibited a significantly higher growth rate, and juvenile recruitment was significantly greater when population density was low. At higher densities, significantly more individuals were lost between capture events which may be indicative of increased rates of dispersal. Mean dispersal distances in mole-rats were reduced at higher densities and increased at lower densities. While both sexes dispersed equally, males were significantly more likely to join an established colony and females created new burrow systems. In addition, four times as many single females were found when population density was low. The apparent differences in the study populations may be attributed to variable annual rainfall or food availability. The greater annual rainfall at the high-density site may provide better habitat conditions and therefore result in an increase in the population density and an increased dispersal rate due to the relaxed ecological constraints such as reduced energetic costs to burrowing. However, the larger body size found at the low-density site may indicate that the available food at that location is of better quality. This study revealed that mole-rats were able to disperse over 1km and therefore a much larger study area would be required in capture-mark-recapture studies to ensure the recapture of the majority of dispersers. Lastly, a surprising find of this study was that females may survive a solitary existence for over two years while awaiting the arrival of a mate.
- Full Text:
- Date Issued: 2017
- Authors: Finn, Kyle T
- Date: 2017
- Subjects: Fukomys damarensis , Fukomys damarensis -- Reproduction , Fukomys damarensis -- Growth , Rodents -- Reproduction -- South Africa -- Northern Cape , Rodents -- Growth -- South Africa -- Northern Cape , Rodent populations -- South Africa -- Northern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/50495 , vital:25993
- Description: Population density may exert changes in a variety of behavioural and physiological characters in animals. However, the effects of density-dependence and dispersal are poorly studied in subterranean rodents due to the difficulties involved in observing such effects in wild populations. Using the cooperative breeding Damaraland mole-rat (Fukomys damarensis) as a model species, the effects of population density on body size, growth rates, group size, recruitment, philopatry and dispersal were investigated at two sites (one with low density and one with high density) in the Northern Cape of South Africa. Group size, litter size and the probability of recapture were independent of population density. However, individual body size, recruitment, dispersal rate and dispersal distance were density-dependent. Individuals were significantly larger, juveniles exhibited a significantly higher growth rate, and juvenile recruitment was significantly greater when population density was low. At higher densities, significantly more individuals were lost between capture events which may be indicative of increased rates of dispersal. Mean dispersal distances in mole-rats were reduced at higher densities and increased at lower densities. While both sexes dispersed equally, males were significantly more likely to join an established colony and females created new burrow systems. In addition, four times as many single females were found when population density was low. The apparent differences in the study populations may be attributed to variable annual rainfall or food availability. The greater annual rainfall at the high-density site may provide better habitat conditions and therefore result in an increase in the population density and an increased dispersal rate due to the relaxed ecological constraints such as reduced energetic costs to burrowing. However, the larger body size found at the low-density site may indicate that the available food at that location is of better quality. This study revealed that mole-rats were able to disperse over 1km and therefore a much larger study area would be required in capture-mark-recapture studies to ensure the recapture of the majority of dispersers. Lastly, a surprising find of this study was that females may survive a solitary existence for over two years while awaiting the arrival of a mate.
- Full Text:
- Date Issued: 2017
Development of an automatic news summarizer for isiXhosa language
- Authors: Ndyalivana, Zukile
- Date: 2017
- Subjects: Text processing (Computer science) Automatic abstracting Computational linguistics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/7875 , vital:30783
- Description: From practice perspective, given the abundance of digital content nowadays, coming up with a technological solution that summarizes written text without losing its message, coherence and cohesion of ideas is highly essential. The technology saves time for readers as well as gives them a chance to focus on the contents that matter most. This is one of the research areas in natural language processing/ information retrieval, which the dissertation tries to contribute to. It tries to contextualize tools and technologies that are developed for other languages to automatically summarize textual Xhosa news articles. Specifically, the dissertation aims at developing a text summarizer for textual Xhosa news articles based on the extraction methods. In doing so, it examines the literature and understand the techniques and technologies used to analyse contents of a written text, transform and synthesize it, the phonology and morphology of the Xhosa language, and finally, designs, implements and test an extraction-based automatic news article for the Xhosa language. Given comprehension and relevance of the literature review, the research design, the methods and tools and technologies used to design, implement and test the pilot system. Two approaches were used to extract relevant sentences, which are, term frequency and sentence position. The Xhosa summarizer is evaluated using a test set. This study has employed both subjective and objective evaluation methods. The results of both methods are satisfactory. Keywords: Xhosa, Automatic Text Summarization, Term Frequency and Sentence Position.
- Full Text:
- Date Issued: 2017
- Authors: Ndyalivana, Zukile
- Date: 2017
- Subjects: Text processing (Computer science) Automatic abstracting Computational linguistics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/7875 , vital:30783
- Description: From practice perspective, given the abundance of digital content nowadays, coming up with a technological solution that summarizes written text without losing its message, coherence and cohesion of ideas is highly essential. The technology saves time for readers as well as gives them a chance to focus on the contents that matter most. This is one of the research areas in natural language processing/ information retrieval, which the dissertation tries to contribute to. It tries to contextualize tools and technologies that are developed for other languages to automatically summarize textual Xhosa news articles. Specifically, the dissertation aims at developing a text summarizer for textual Xhosa news articles based on the extraction methods. In doing so, it examines the literature and understand the techniques and technologies used to analyse contents of a written text, transform and synthesize it, the phonology and morphology of the Xhosa language, and finally, designs, implements and test an extraction-based automatic news article for the Xhosa language. Given comprehension and relevance of the literature review, the research design, the methods and tools and technologies used to design, implement and test the pilot system. Two approaches were used to extract relevant sentences, which are, term frequency and sentence position. The Xhosa summarizer is evaluated using a test set. This study has employed both subjective and objective evaluation methods. The results of both methods are satisfactory. Keywords: Xhosa, Automatic Text Summarization, Term Frequency and Sentence Position.
- Full Text:
- Date Issued: 2017
Differential regulation of wheat (Triticum aestivum) callose synthases during Russian wheat aphid (diuraphis noxia)infestation
- Authors: Ngwenya, Nompilo
- Date: 2017
- Subjects: Russian wheat aphid Wheat -- Diseases and pests
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8100 , vital:31522
- Description: Plant production serves as the primary food source for all living beings and is continuously being affected by many biotic and abiotic factors. Wheat, one of the most consumed cereal crops in the world and the second most cultivated crop after maize in South Africa, is continuously being affected by Russian wheat aphid (RWA) since 1978. To counteract the effect of this aphid, the first resistant wheat cultivar was developed in 1984 in South Africa containing the Dn1 resistance gene. However, the mechanism of action of the resistance is still not fully understood to date. The feeding of the RWA on the wheat induces callose deposition especially in susceptible wheat cultivars, linking the β-1.3-polysaccharide (callose) to the resistance mechanism. Callose is synthesized by callose synthases, also known as glucan synthase-like genes (GSL). Not much is known about the mechanism of action of callose synthases or how they are regulated in response to the RWA. Bioinformatics tools, such as those available at NCBI, were used to identify the wheat callose synthases genes. The proteins encoded by the identified wheat callose synthases genes, were then analyzed for conserved domain motifs using the MEME suite and InterproScan, sequence similarities using ClustaL Omega and transmembrane domains using HMMTOP and ProtCamp. These were then compared with those of the already characterized Arabidopsis callose synthase proteins in an attempt to identify the wheat callose synthase(s) that responds to aphid feeding. Further bioinformatics studies were carried out to identify the presence of biotic stress associated cis-acting regulatory elements found in the 1.5 kbp upstream region of the start codon of the Arabidopsis callose synthase genes. Eight partial wheat callose synthase sequences were identified and two of these (TaGSL2 and TaGSL22) showed high similarities to the AtGSL5, which is up-regulated in response to aphid feeding in Arabidopsis. Six of the wheat callose synthase genes were mediated to code for the functional callose synthases proteins: TaGSL3, 8, 12, 19, 22 and 23, and analyzed for conserved protein motifs. Based on the sequence similarities and conserved protein domains, TaGSL2 and TaGSL22 were found to be the most similar to AtGSL5 and most likely to respond to RWA infestation. Cis-acting regulatory element analyses confirmed the possibility of TaGSL22 being responsible for callose deposition in wheat as biotic stress associated cis-acting regulatory elements, Box W1, TC- rich element and W- box were all found in the 1.5 kbp upstream of the TaGSL22 coding region. Callose was quantified in both susceptible and resistant wheat cultivars using the aniline blue fluorescence method. When infested with RWA-SA1, the susceptible wheat cultivar (Tugela) deposited significantly higher amounts of callose, compared to the resistant wheat cultivar (Tugela DN), which deposited little, to no callose with respect to the control samples. Transcription analysis, of the TaGSL2 and TaGSL22 in RWA-SA2 infested Tugela and Tugela DN wheat cultivars, was performed using real time polymerase chain reaction (qPCR). Both TaGSL2 and TaGSL22 genes were up-regulated in Tugela and Tugela DN wheat cultivars in response to RWA-SA2 infestation, with TaGSL22 being more expressed than TaGSL2 in both cultivars, indicating that RWA-SA2 is able to overcome the resistance of Tugela DN and cause callose deposition. However, significantly higher expression of both genes was still observed in the susceptible, Tugela wheat cultivar. This study therefore confirms that callose deposition is associated with RWA-SA1 feeding, only in the susceptible wheat cultivar, Tugela and not the resistant cultivar, Tugela DN. However, during RWA-SA2 feeding, two of the eight identified callose synthases in wheat, are up-regulated in response to RWA-SA2 feeding, in both the resistant and susceptible wheat cultivars with higher levels observed in the susceptible wheat cultivar when compared to the resistant wheat cultivar. TaGSL2 and TaGSL22 are therefore implicated in the callose deposition observed in the susceptible and resistant wheat cultivars, after RWA-SA2 infestation. Further studies are required to confirm the differential regulation of the two wheat callose synthases proteins during RWA infestation and their possible role in the resistance mechanism of the resistant wheat cultivar, Tugela DN.
- Full Text:
- Date Issued: 2017
- Authors: Ngwenya, Nompilo
- Date: 2017
- Subjects: Russian wheat aphid Wheat -- Diseases and pests
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8100 , vital:31522
- Description: Plant production serves as the primary food source for all living beings and is continuously being affected by many biotic and abiotic factors. Wheat, one of the most consumed cereal crops in the world and the second most cultivated crop after maize in South Africa, is continuously being affected by Russian wheat aphid (RWA) since 1978. To counteract the effect of this aphid, the first resistant wheat cultivar was developed in 1984 in South Africa containing the Dn1 resistance gene. However, the mechanism of action of the resistance is still not fully understood to date. The feeding of the RWA on the wheat induces callose deposition especially in susceptible wheat cultivars, linking the β-1.3-polysaccharide (callose) to the resistance mechanism. Callose is synthesized by callose synthases, also known as glucan synthase-like genes (GSL). Not much is known about the mechanism of action of callose synthases or how they are regulated in response to the RWA. Bioinformatics tools, such as those available at NCBI, were used to identify the wheat callose synthases genes. The proteins encoded by the identified wheat callose synthases genes, were then analyzed for conserved domain motifs using the MEME suite and InterproScan, sequence similarities using ClustaL Omega and transmembrane domains using HMMTOP and ProtCamp. These were then compared with those of the already characterized Arabidopsis callose synthase proteins in an attempt to identify the wheat callose synthase(s) that responds to aphid feeding. Further bioinformatics studies were carried out to identify the presence of biotic stress associated cis-acting regulatory elements found in the 1.5 kbp upstream region of the start codon of the Arabidopsis callose synthase genes. Eight partial wheat callose synthase sequences were identified and two of these (TaGSL2 and TaGSL22) showed high similarities to the AtGSL5, which is up-regulated in response to aphid feeding in Arabidopsis. Six of the wheat callose synthase genes were mediated to code for the functional callose synthases proteins: TaGSL3, 8, 12, 19, 22 and 23, and analyzed for conserved protein motifs. Based on the sequence similarities and conserved protein domains, TaGSL2 and TaGSL22 were found to be the most similar to AtGSL5 and most likely to respond to RWA infestation. Cis-acting regulatory element analyses confirmed the possibility of TaGSL22 being responsible for callose deposition in wheat as biotic stress associated cis-acting regulatory elements, Box W1, TC- rich element and W- box were all found in the 1.5 kbp upstream of the TaGSL22 coding region. Callose was quantified in both susceptible and resistant wheat cultivars using the aniline blue fluorescence method. When infested with RWA-SA1, the susceptible wheat cultivar (Tugela) deposited significantly higher amounts of callose, compared to the resistant wheat cultivar (Tugela DN), which deposited little, to no callose with respect to the control samples. Transcription analysis, of the TaGSL2 and TaGSL22 in RWA-SA2 infested Tugela and Tugela DN wheat cultivars, was performed using real time polymerase chain reaction (qPCR). Both TaGSL2 and TaGSL22 genes were up-regulated in Tugela and Tugela DN wheat cultivars in response to RWA-SA2 infestation, with TaGSL22 being more expressed than TaGSL2 in both cultivars, indicating that RWA-SA2 is able to overcome the resistance of Tugela DN and cause callose deposition. However, significantly higher expression of both genes was still observed in the susceptible, Tugela wheat cultivar. This study therefore confirms that callose deposition is associated with RWA-SA1 feeding, only in the susceptible wheat cultivar, Tugela and not the resistant cultivar, Tugela DN. However, during RWA-SA2 feeding, two of the eight identified callose synthases in wheat, are up-regulated in response to RWA-SA2 feeding, in both the resistant and susceptible wheat cultivars with higher levels observed in the susceptible wheat cultivar when compared to the resistant wheat cultivar. TaGSL2 and TaGSL22 are therefore implicated in the callose deposition observed in the susceptible and resistant wheat cultivars, after RWA-SA2 infestation. Further studies are required to confirm the differential regulation of the two wheat callose synthases proteins during RWA infestation and their possible role in the resistance mechanism of the resistant wheat cultivar, Tugela DN.
- Full Text:
- Date Issued: 2017
Dinoflagellate communities in Algoa Bay: abundance and dynamics
- Authors: Van Zyl, Hendrik Francois
- Date: 2017
- Subjects: Marine microbiology , Microbiology Marine biology -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21218 , vital:29457
- Description: The contribution of dinoflagellates to the phytoplankton of Algoa Bay is largely unknown. This study aimed to address this, but additionally considered seasonal and spatial variation in the dinoflagellate communities of Algoa Bay. Phytoplankton abundance and the inorganic nutrients ammonium, total oxidized nitrogen, soluble reactive phosphorus and silicate were analysed. Diatoms dominated the phytoplankton community in most samples, with dinoflagellates only occasionally dominating the community. No seasonality could be detected in dinoflagellate abundance. Furthermore, no significant spatial patterns could be distinguished in dinoflagellate abundance, with the only exception being that the Port Elizabeth harbour waters contained significantly fewer dinoflagellate cells than the younger Ngqura harbour. Total phytoplankton abundance was correlated with inorganic nitrogen concentrations, but this was due to diatoms – dinoflagellate abundance did not correlate significantly with any nutrient measured. Both the common, historically bloom-forming Noctiluca scintilans, as well as the recently red tide-forming Lingulodinium polyhedra were recorded during the study, the latter almost exclusively from the harbours, which can be considered repositories of these toxic and harmful algal cells. The findings suggest that dinoflagellates in Algoa Bay are a robust phytoplankton group able to survive, and often thrive, in wide range of environmental conditions.
- Full Text:
- Date Issued: 2017
- Authors: Van Zyl, Hendrik Francois
- Date: 2017
- Subjects: Marine microbiology , Microbiology Marine biology -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21218 , vital:29457
- Description: The contribution of dinoflagellates to the phytoplankton of Algoa Bay is largely unknown. This study aimed to address this, but additionally considered seasonal and spatial variation in the dinoflagellate communities of Algoa Bay. Phytoplankton abundance and the inorganic nutrients ammonium, total oxidized nitrogen, soluble reactive phosphorus and silicate were analysed. Diatoms dominated the phytoplankton community in most samples, with dinoflagellates only occasionally dominating the community. No seasonality could be detected in dinoflagellate abundance. Furthermore, no significant spatial patterns could be distinguished in dinoflagellate abundance, with the only exception being that the Port Elizabeth harbour waters contained significantly fewer dinoflagellate cells than the younger Ngqura harbour. Total phytoplankton abundance was correlated with inorganic nitrogen concentrations, but this was due to diatoms – dinoflagellate abundance did not correlate significantly with any nutrient measured. Both the common, historically bloom-forming Noctiluca scintilans, as well as the recently red tide-forming Lingulodinium polyhedra were recorded during the study, the latter almost exclusively from the harbours, which can be considered repositories of these toxic and harmful algal cells. The findings suggest that dinoflagellates in Algoa Bay are a robust phytoplankton group able to survive, and often thrive, in wide range of environmental conditions.
- Full Text:
- Date Issued: 2017
Elephant space use and impacts on vegetation in response to habitat expansion in succulent thicket
- Lochner, Christiaan Stefanus
- Authors: Lochner, Christiaan Stefanus
- Date: 2017
- Subjects: Grasses -- South Africa -- Addo Elephant National Park , Vegetation mapping -- South Africa -- Addo Elephant National Park Nature conservation -- South Africa -- Addo Elephant National Park Ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/18597 , vital:28687
- Description: Elephant alter vegetation composition and structure, and at high densities biodiversity declines. While habitat expansion is one of several tools proposed to mitigate such effects, its effectiveness remains untested. Despite previous incremental expansions of the Addo Main Camp section of the Addo Elephant National Park to reduce the impacts of elephant on vulnerable Succulent Thicket habitats, significant declines in plant species richness, density and biomass were recorded. During 2010 the addition of the Colchester section effectively doubled the area (120 km2 to 230 km2) available to elephant, presumably releasing browsing intensity in the Addo Main Camp section, hence allowing for the regeneration (through growth and resprouting) of the vulnerable canopy shrubs (a key functional guild). I aim to test this hypothesis. I use space use data from before and after expansion to track the distribution of elephant utilization across the park. Additionally, I use data collected between 2008 and 2015 on shrub composition and structure and the structure of individual canopy species, to illustrate the long-term trends in elephant impact. I firstly show that although elephants shift a proportion of their utilization distribution into novel habitat, they continue to show a strong preference for the Addo Main Camp section, with its higher water availability yet heavier utilized vegetation. I also illustrate that within 5 years of the expansion, effects on the canopy shrub community declined, presumably by spreading impacts to novel areas. Specifically, I show that vegetation composition and structure (volume and density) remained stable during this period. While these results indicate that range expansion might be a viable tool to mitigate the impact of elephant on vegetation composition and structure, at least in the short-term, the consequences for ecological functioning remain to be measured. In the long-term, I predict that attempts to use range expansion as a management tool may fail if implemented without limiting population numbers and controlling the distribution of local densities (e.g. by managing surface water availability).
- Full Text:
- Date Issued: 2017
- Authors: Lochner, Christiaan Stefanus
- Date: 2017
- Subjects: Grasses -- South Africa -- Addo Elephant National Park , Vegetation mapping -- South Africa -- Addo Elephant National Park Nature conservation -- South Africa -- Addo Elephant National Park Ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/18597 , vital:28687
- Description: Elephant alter vegetation composition and structure, and at high densities biodiversity declines. While habitat expansion is one of several tools proposed to mitigate such effects, its effectiveness remains untested. Despite previous incremental expansions of the Addo Main Camp section of the Addo Elephant National Park to reduce the impacts of elephant on vulnerable Succulent Thicket habitats, significant declines in plant species richness, density and biomass were recorded. During 2010 the addition of the Colchester section effectively doubled the area (120 km2 to 230 km2) available to elephant, presumably releasing browsing intensity in the Addo Main Camp section, hence allowing for the regeneration (through growth and resprouting) of the vulnerable canopy shrubs (a key functional guild). I aim to test this hypothesis. I use space use data from before and after expansion to track the distribution of elephant utilization across the park. Additionally, I use data collected between 2008 and 2015 on shrub composition and structure and the structure of individual canopy species, to illustrate the long-term trends in elephant impact. I firstly show that although elephants shift a proportion of their utilization distribution into novel habitat, they continue to show a strong preference for the Addo Main Camp section, with its higher water availability yet heavier utilized vegetation. I also illustrate that within 5 years of the expansion, effects on the canopy shrub community declined, presumably by spreading impacts to novel areas. Specifically, I show that vegetation composition and structure (volume and density) remained stable during this period. While these results indicate that range expansion might be a viable tool to mitigate the impact of elephant on vegetation composition and structure, at least in the short-term, the consequences for ecological functioning remain to be measured. In the long-term, I predict that attempts to use range expansion as a management tool may fail if implemented without limiting population numbers and controlling the distribution of local densities (e.g. by managing surface water availability).
- Full Text:
- Date Issued: 2017
Evaluating the importance of mangroves as fish nurseries in selected warm temperate South African estuaries
- Authors: Muller, Cuen
- Date: 2017
- Subjects: Mangrove ecology -- South Africa Mangrove fisheries -- South Africa , Estuarine ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12080 , vital:27029
- Description: The value of mangrove habitats as fish nurseries was assessed by comparing communities of early stage and juvenile fishes between estuaries with and without mangroves. Early stage fishes were sampled using boat-based plankton towing while juveniles were sampled by seine netting. Sampling took place at five sites spaced 1 km apart starting near the estuary mouth in four estuaries along the temperate coastline of the Eastern Cape Province of South Africa. Four estuaries were selected based on shared similarities which included catchment area, estuarine area and shared habitats barring the presence of mangroves which occupied the river margins of two systems. Results revealed that early stage and juvenile fish communities (both marine- and estuary-spawned) were similar between systems with and without mangrove habitats. Differences in fish communities among estuaries were rather attributed to axial salinity gradients associated with greater freshwater input, while season and temperature produced significant variances in fish densities with Generalised Additive Models revealing responses of communities to these variables. A common estuarine-dependent fish, Rhabdosargus holubi (Family Sparidae), was further investigated to determine habitat use, residency and dietary patterns in different mangrove habitats. High habitat residency in this species was revealed during a short-term tagging study using Visible Implant Elastomer tags and long-term isotope analysis in juveniles sampled from two contrasting mangrove habitats. A wider feeding niche was observed in an eelgrass-red mangrove connected habitat when compared with more exposed white mangrove areas. Low dependence on mangrove habitats in temperate estuaries is likely due to their tidally dominated inundation and limited refuge potential due to smaller area coverage by mangroves in temperate estuaries. Relatively lower primary productivity in warm temperate mangrove areas, relative to their tropical counterparts, provides no significant feeding advantage or refuge opportunities relative to other available habitats in these estuaries. Warm temperate estuaries, which are both spatially and temporally highly variable, instead host species which are habitat generalists, able to capitalise on these highly dynamic environments.
- Full Text:
- Date Issued: 2017
- Authors: Muller, Cuen
- Date: 2017
- Subjects: Mangrove ecology -- South Africa Mangrove fisheries -- South Africa , Estuarine ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12080 , vital:27029
- Description: The value of mangrove habitats as fish nurseries was assessed by comparing communities of early stage and juvenile fishes between estuaries with and without mangroves. Early stage fishes were sampled using boat-based plankton towing while juveniles were sampled by seine netting. Sampling took place at five sites spaced 1 km apart starting near the estuary mouth in four estuaries along the temperate coastline of the Eastern Cape Province of South Africa. Four estuaries were selected based on shared similarities which included catchment area, estuarine area and shared habitats barring the presence of mangroves which occupied the river margins of two systems. Results revealed that early stage and juvenile fish communities (both marine- and estuary-spawned) were similar between systems with and without mangrove habitats. Differences in fish communities among estuaries were rather attributed to axial salinity gradients associated with greater freshwater input, while season and temperature produced significant variances in fish densities with Generalised Additive Models revealing responses of communities to these variables. A common estuarine-dependent fish, Rhabdosargus holubi (Family Sparidae), was further investigated to determine habitat use, residency and dietary patterns in different mangrove habitats. High habitat residency in this species was revealed during a short-term tagging study using Visible Implant Elastomer tags and long-term isotope analysis in juveniles sampled from two contrasting mangrove habitats. A wider feeding niche was observed in an eelgrass-red mangrove connected habitat when compared with more exposed white mangrove areas. Low dependence on mangrove habitats in temperate estuaries is likely due to their tidally dominated inundation and limited refuge potential due to smaller area coverage by mangroves in temperate estuaries. Relatively lower primary productivity in warm temperate mangrove areas, relative to their tropical counterparts, provides no significant feeding advantage or refuge opportunities relative to other available habitats in these estuaries. Warm temperate estuaries, which are both spatially and temporally highly variable, instead host species which are habitat generalists, able to capitalise on these highly dynamic environments.
- Full Text:
- Date Issued: 2017
Evaluation of groundwater potential using neotectonics and geophysics in the context of post Karoo tectonic framework around Fort Beaufort and Smithfield, Eastern Cape, South Africa
- Authors: Ndlovu, Nkosilathi
- Date: 2017
- Subjects: Neotectonics -- South Africa -- Eastern Cape Groundwater -- South Africa -- Eastern Cape Geophysical surveys -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12687 , vital:39299
- Description: Geological and geophysical methods were used to investigate the Karoo area extending from longitudes 25.50 E to 27.50 E and latitudes 300 S to 330 S in South Africa, particularly Fort Beaufort, Aliwal North, Venterstad and Smithfield. The geology of the area is dominated by the upper Beaufort Group (Adelaide Subgroup) with an extensive network of dolerite sills and dykes that intruded the sedimentary sequence. A relationship between neotectonics, post-Karoo tectonics, groundwater and lithology was investigated to locate suitable groundwater potential sites. Apart from studying the role of neotectonics and the post Karoo tectonics, this research aims at generating groundwater targets to alleviate water shortages mainly for farming and livestock, and prove that neotectonics is still active. Methodologies adopted for obtaining these results included a comprehensive literature review, thin section analysis, scanning electron microscopy, geophysical investigation (magnetic, gravity, and vertical electrical sounding), and the application of Geographical Information Systems (GIS) and remote sensing. Twenty samples were collected at various locations within the study area and were analyzed using the petrographic microscope while others were analyzed with the Scanning Electron Microscopic (SEM) combined with an Energy dispersive x-ray spectrometry. The results show that the rocks are fractured, porous and have variable mineralogy (presence of heavy minerals) within the rocks. The use of Geographical Information Systems (GIS) and remote sensing in geological surveys, especially hydrogeology, has gained momentum over the past few years. This research is no exception as ArcMap software was used to create a map of seismic epicentres of the Eastern Cape Province. From the map it can be observed that seismicity still occurs and thus leading to the notion of neotectonics being active. Lineaments were also automatically extracted using the ENVI 5.1 and Geomatica 2013 software. Lineaments are zones of weakness in the subsurface of the Earth and are very important in locating groundwater potential sites. Geophysical techniques are essential and highly accurate for groundwater studies. Gravity and magnetic techniques were applied on data which was supplied as grids. Analysis using Geosoft Oasis 8.3 revealed extensive lineaments and ring like patterns and these were inferred to be dolerite intrusions (sills and dykes). The morphology of the intrusions help in identifying possible groundwater potential zones and thus they should be investigated. Vertical electrical sounding (VES) technique using the Schlumberger array was carried out at three sites (Fort Beaufort fracture which is possibly related to Quaternary surface uplift of the Amatole-Swaziland axis, splay of the Fort Beaufort fracture and at a site which showed high groundwater potential) to explore subsurface layering. IP2win (lite), 1-D modelling software was used to model the apparent resistivity data to obtain the geoelectric parameters of the subsurface (thickness and resistivity). The VES results are consistent with fractured rocks that aid groundwater movement. The VES data for the three sites was further modelled by the RES2DINV software and this shows low resistivity values associated with loose, water saturated top sandy soil and higher resistivity values associated with sedimentary sequences and dolerite. Moreover, potential sites for citing wells are predicted to be between 79.5 and 128 m on the profile. Further neotectonic studies need to be done, especially on the quaternary sediments as they would have more neotectonic evidence. The use of geophysical techniques for groundwater search need to be intensified, with more emphasis being put to the sedimentary sequences bordered by dolerite intrusions and fractured zones.
- Full Text:
- Date Issued: 2017
- Authors: Ndlovu, Nkosilathi
- Date: 2017
- Subjects: Neotectonics -- South Africa -- Eastern Cape Groundwater -- South Africa -- Eastern Cape Geophysical surveys -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12687 , vital:39299
- Description: Geological and geophysical methods were used to investigate the Karoo area extending from longitudes 25.50 E to 27.50 E and latitudes 300 S to 330 S in South Africa, particularly Fort Beaufort, Aliwal North, Venterstad and Smithfield. The geology of the area is dominated by the upper Beaufort Group (Adelaide Subgroup) with an extensive network of dolerite sills and dykes that intruded the sedimentary sequence. A relationship between neotectonics, post-Karoo tectonics, groundwater and lithology was investigated to locate suitable groundwater potential sites. Apart from studying the role of neotectonics and the post Karoo tectonics, this research aims at generating groundwater targets to alleviate water shortages mainly for farming and livestock, and prove that neotectonics is still active. Methodologies adopted for obtaining these results included a comprehensive literature review, thin section analysis, scanning electron microscopy, geophysical investigation (magnetic, gravity, and vertical electrical sounding), and the application of Geographical Information Systems (GIS) and remote sensing. Twenty samples were collected at various locations within the study area and were analyzed using the petrographic microscope while others were analyzed with the Scanning Electron Microscopic (SEM) combined with an Energy dispersive x-ray spectrometry. The results show that the rocks are fractured, porous and have variable mineralogy (presence of heavy minerals) within the rocks. The use of Geographical Information Systems (GIS) and remote sensing in geological surveys, especially hydrogeology, has gained momentum over the past few years. This research is no exception as ArcMap software was used to create a map of seismic epicentres of the Eastern Cape Province. From the map it can be observed that seismicity still occurs and thus leading to the notion of neotectonics being active. Lineaments were also automatically extracted using the ENVI 5.1 and Geomatica 2013 software. Lineaments are zones of weakness in the subsurface of the Earth and are very important in locating groundwater potential sites. Geophysical techniques are essential and highly accurate for groundwater studies. Gravity and magnetic techniques were applied on data which was supplied as grids. Analysis using Geosoft Oasis 8.3 revealed extensive lineaments and ring like patterns and these were inferred to be dolerite intrusions (sills and dykes). The morphology of the intrusions help in identifying possible groundwater potential zones and thus they should be investigated. Vertical electrical sounding (VES) technique using the Schlumberger array was carried out at three sites (Fort Beaufort fracture which is possibly related to Quaternary surface uplift of the Amatole-Swaziland axis, splay of the Fort Beaufort fracture and at a site which showed high groundwater potential) to explore subsurface layering. IP2win (lite), 1-D modelling software was used to model the apparent resistivity data to obtain the geoelectric parameters of the subsurface (thickness and resistivity). The VES results are consistent with fractured rocks that aid groundwater movement. The VES data for the three sites was further modelled by the RES2DINV software and this shows low resistivity values associated with loose, water saturated top sandy soil and higher resistivity values associated with sedimentary sequences and dolerite. Moreover, potential sites for citing wells are predicted to be between 79.5 and 128 m on the profile. Further neotectonic studies need to be done, especially on the quaternary sediments as they would have more neotectonic evidence. The use of geophysical techniques for groundwater search need to be intensified, with more emphasis being put to the sedimentary sequences bordered by dolerite intrusions and fractured zones.
- Full Text:
- Date Issued: 2017
Evolution of Fe-Ti-V oxides from the main magnetite layer, Upper Zone, Bushveld Complex, South Africa: a comparison across the Western, Northern and Eastern Lobes
- Authors: Iorga-Pavel, Adina
- Date: 2017
- Subjects: Magnetite -- South Africa -- Bushveld Complex , Mineralogy -- South Africa -- Bushveld Complex , Oxides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7357 , vital:21248
- Description: The Main Magnetite Layer (MML) from the Northern, Eastern and Western lobes of the Bushveld Complex shows significant differences in textures and in mineral chemistry. The MML in the Eastern and Western lobes is massive, with rare, small and altered pyroxene inclusions. By contrast, the MML in the Northern Lobe is more heterogeneous, and it is made of anastomosed and sometimes imbricated, thin layers of magnetitite, magnetite-rich and silicate-rich rocks, where the inclusions in Ti-magnetite are more numerous and consist of mainly altered subhedral and anhedral plagioclase. The comparison of the maximum values of the oxides shows that the MML in the Northern Lobe has the highest content of V2O3 (1.97 wt%), TiO2 (22.49 wt%) and MgO (2.92 wt%), while the MML in the Eastern Lobe has the highest content of Cr2O3 (2.92 wt%) and Al2O3 (9.80 wt%), but lowest V2O3 (0.52 wt%). The lower TiO2 content and higher V2O3 content in the MML of the Northern and Western Lobes suggest lower oxidising conditions during the crystallization of oxides. The MML in all three studied lobes consists of two layers of magnetitite, suggesting that MML was formed by two separate magma influxes, probably on a diverse and complex type of magma chamber floor. The high TiO2 content in magnetite, together with the negative correlation between TiO2 and V2O3 suggest that the maximum V content should represent a “less evolved” and less oxidized melt. In this respect, higher concentrations V2O3 in magnetite can be expected in magnetitite layers with lower TiO2. It can be inferred that the Ti-magetite in the MML from the Eastern Lobe was formed from a more evolved (TiO2 and FeO enriched) and more oxidized (lower V2O3) melt, compared with the MML from the Northern and Western lobes. These findings can be used to illustrate: a) that high fO2 can be responsible for the relatively low V content in magnetite from Fe-Ti oxide ores and b) the vanadium in magnetite decreases significantly in more evolved cumulates, due to a decreasing fO2 with differentiation. Compositional profiles of Ti- magnetite along the stratigraphic height of the MML in the Eastern Lobe (composed of two layers, separated in the outcrop by a parting plane) depicts a cryptic variation with depth in each of the two layers, where each layer can be divided into four sublayers, labelled upwards as A, B, C (with C1, C2, C3 and C4) and D based on Cr, Mg, Ti, Al and V variation. Small scale reversals of the mentioned elements and the repetition of A, B, C and D sub-layers in each layer suggest that MML formed from two successive influxes of magma (indicated by relatively elevated values of MgO), which evolved by crystallization and cooling in a similar manner, to produce the A to D variation. Based on these observations and theoretical considerations, this study dismisses several models for the genesis of the MML: the immiscibility, the increased oxygen fugacity, the relative increase of H2O content of the melt, pressure variation within the magma chamber, magma mixing, and crustal rock contamination. The model proposed here for MML genesis involves the crystallization of both Ti-magnetite and ilmenite from a Fe-Ti-Ca-Al-rich melt (ferro-diorite) along its line of descent, and gravitational settling of oxides in a dynamic regime. The factor which triggered the crystallization of magnetite is a critical saturation of melt in magnetite (attaining saturation of magnetite and ilmenite in the melt after some silicates crystallized). The difference between the nature of silicate inclusions in magnetite and the nature of the magnetite floor, suggest that the Fe-rich magma was not in equilibrium with the cumulates from the present floor, but rather it was emplaced laterally on long distances, the melt being disrupted from its own cumulates. The absence of correlation between the Cr2O3 in magnetite and co-existing ilmenite can indicate than no in-situ fractional crystallization took place at the moment of magnetite accumulation, but rather that magnetite and ilmenite gravitationally accumulated and the grains mechanically mixed from a flowing magma. The model presented herein proposes a five stage model of MML formation: Stage 1 is represented by the intrusion of a Fe-T-Ca-Al-rich magma which expands laterally within a flat and thin magma chamber. Oxides start to crystallize within a dynamic regime of the magma. Stage 2 is given by the accumulation of oxides at the bottom of the new floor. Some plagioclase starts to crystallize (e.g. subhedral plagioclase in the MML of the Northern Lobe). Stage 3 is a short living static regime, where both plagioclase and magnetite crystallized, without fractionation, forming the thin magnetite-anorthosite layer separating the MML into two layers. Stage 4 is represented by a new influx of Fe-Ti-Ca-Al-rich magma which is emplaced above the magnetite-bearing anorthosite, flushing out the liquid which was in equilibrium with the anorthosite. The oxides started crystallizing in a dynamic regime, as in Stage 1. In stage 5, the accumulation of oxides produced the upper layer of the MML. Our interpretation is that the flow of the magma was more dynamic (probably more turbulent on long distances) in the MML of the Northern Lobe, compared to the MML in the Western and Eastern lobes, producing highly heterogeneous and imbricated thin layers of magnetitite and silicates. The presence of olivine corona around orthopyroxene suggests the incongruent melting of orthopyroxene, which points out towards a local re-heating of existing silicate layers, this being a strong argument for multiple injections in generation of MML. Massive crystallization of oxides produced the sulphur saturation of the magma and caused the precipitation of the igneous sulphides, which nucleated on the existing oxides. Later hydrothermal fluids (and/or late magmatic volatiles?) percolated the MML, producing chloritization of the included silicates, remobilization of igneous sulphides and precipitation of hydrothermal sulphides.
- Full Text:
- Date Issued: 2017
- Authors: Iorga-Pavel, Adina
- Date: 2017
- Subjects: Magnetite -- South Africa -- Bushveld Complex , Mineralogy -- South Africa -- Bushveld Complex , Oxides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7357 , vital:21248
- Description: The Main Magnetite Layer (MML) from the Northern, Eastern and Western lobes of the Bushveld Complex shows significant differences in textures and in mineral chemistry. The MML in the Eastern and Western lobes is massive, with rare, small and altered pyroxene inclusions. By contrast, the MML in the Northern Lobe is more heterogeneous, and it is made of anastomosed and sometimes imbricated, thin layers of magnetitite, magnetite-rich and silicate-rich rocks, where the inclusions in Ti-magnetite are more numerous and consist of mainly altered subhedral and anhedral plagioclase. The comparison of the maximum values of the oxides shows that the MML in the Northern Lobe has the highest content of V2O3 (1.97 wt%), TiO2 (22.49 wt%) and MgO (2.92 wt%), while the MML in the Eastern Lobe has the highest content of Cr2O3 (2.92 wt%) and Al2O3 (9.80 wt%), but lowest V2O3 (0.52 wt%). The lower TiO2 content and higher V2O3 content in the MML of the Northern and Western Lobes suggest lower oxidising conditions during the crystallization of oxides. The MML in all three studied lobes consists of two layers of magnetitite, suggesting that MML was formed by two separate magma influxes, probably on a diverse and complex type of magma chamber floor. The high TiO2 content in magnetite, together with the negative correlation between TiO2 and V2O3 suggest that the maximum V content should represent a “less evolved” and less oxidized melt. In this respect, higher concentrations V2O3 in magnetite can be expected in magnetitite layers with lower TiO2. It can be inferred that the Ti-magetite in the MML from the Eastern Lobe was formed from a more evolved (TiO2 and FeO enriched) and more oxidized (lower V2O3) melt, compared with the MML from the Northern and Western lobes. These findings can be used to illustrate: a) that high fO2 can be responsible for the relatively low V content in magnetite from Fe-Ti oxide ores and b) the vanadium in magnetite decreases significantly in more evolved cumulates, due to a decreasing fO2 with differentiation. Compositional profiles of Ti- magnetite along the stratigraphic height of the MML in the Eastern Lobe (composed of two layers, separated in the outcrop by a parting plane) depicts a cryptic variation with depth in each of the two layers, where each layer can be divided into four sublayers, labelled upwards as A, B, C (with C1, C2, C3 and C4) and D based on Cr, Mg, Ti, Al and V variation. Small scale reversals of the mentioned elements and the repetition of A, B, C and D sub-layers in each layer suggest that MML formed from two successive influxes of magma (indicated by relatively elevated values of MgO), which evolved by crystallization and cooling in a similar manner, to produce the A to D variation. Based on these observations and theoretical considerations, this study dismisses several models for the genesis of the MML: the immiscibility, the increased oxygen fugacity, the relative increase of H2O content of the melt, pressure variation within the magma chamber, magma mixing, and crustal rock contamination. The model proposed here for MML genesis involves the crystallization of both Ti-magnetite and ilmenite from a Fe-Ti-Ca-Al-rich melt (ferro-diorite) along its line of descent, and gravitational settling of oxides in a dynamic regime. The factor which triggered the crystallization of magnetite is a critical saturation of melt in magnetite (attaining saturation of magnetite and ilmenite in the melt after some silicates crystallized). The difference between the nature of silicate inclusions in magnetite and the nature of the magnetite floor, suggest that the Fe-rich magma was not in equilibrium with the cumulates from the present floor, but rather it was emplaced laterally on long distances, the melt being disrupted from its own cumulates. The absence of correlation between the Cr2O3 in magnetite and co-existing ilmenite can indicate than no in-situ fractional crystallization took place at the moment of magnetite accumulation, but rather that magnetite and ilmenite gravitationally accumulated and the grains mechanically mixed from a flowing magma. The model presented herein proposes a five stage model of MML formation: Stage 1 is represented by the intrusion of a Fe-T-Ca-Al-rich magma which expands laterally within a flat and thin magma chamber. Oxides start to crystallize within a dynamic regime of the magma. Stage 2 is given by the accumulation of oxides at the bottom of the new floor. Some plagioclase starts to crystallize (e.g. subhedral plagioclase in the MML of the Northern Lobe). Stage 3 is a short living static regime, where both plagioclase and magnetite crystallized, without fractionation, forming the thin magnetite-anorthosite layer separating the MML into two layers. Stage 4 is represented by a new influx of Fe-Ti-Ca-Al-rich magma which is emplaced above the magnetite-bearing anorthosite, flushing out the liquid which was in equilibrium with the anorthosite. The oxides started crystallizing in a dynamic regime, as in Stage 1. In stage 5, the accumulation of oxides produced the upper layer of the MML. Our interpretation is that the flow of the magma was more dynamic (probably more turbulent on long distances) in the MML of the Northern Lobe, compared to the MML in the Western and Eastern lobes, producing highly heterogeneous and imbricated thin layers of magnetitite and silicates. The presence of olivine corona around orthopyroxene suggests the incongruent melting of orthopyroxene, which points out towards a local re-heating of existing silicate layers, this being a strong argument for multiple injections in generation of MML. Massive crystallization of oxides produced the sulphur saturation of the magma and caused the precipitation of the igneous sulphides, which nucleated on the existing oxides. Later hydrothermal fluids (and/or late magmatic volatiles?) percolated the MML, producing chloritization of the included silicates, remobilization of igneous sulphides and precipitation of hydrothermal sulphides.
- Full Text:
- Date Issued: 2017
Exploring feeding ecology and population growth rate responses of ungulates in Southern African arid biomes
- Authors: Vermeulen, Mika Margaret
- Date: 2017
- Subjects: Ungulates -- South Africa Arid regions -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/15237 , vital:28189
- Description: Limited resources, extreme temperatures and predators are some of the stresses that are faced by ungulates in arid biomes. Understanding how these stressors influence ungulate feeding ecology and population growth rates is important for managers, as these could influence the persistence of ungulates in protected areas. An understanding of these stressors is especially relevant given the significant population declines in ungulate species globally. The Nama Karoo biome and the arid Savanna, an arid form of the Savanna biome, are both arid, but have distinct rainfall seasonality and vegetation structure and represent unique characteristics that need to be properly considered in their own regard. The literature on African ungulate feeding ecology covers a range of species and biomes from southern and east Africa, however, very little is known about ungulate dietary preferences in the Nama Karoo. Unexplained population declines in springbok (Antidorcas marsupialis) and red hartebeest (Alcelaphus buselaphus caama) have occurred at local scales across the Nama Karoo and the arid Savanna, most notably springbok population declines at the Karoo National Park (Karoo NP). This study sought to improve the understanding of ungulate feeding ecology and population growth rate responses in two arid biomes of South Africa. To achieve this, ungulate dietary composition was characterised, in terms of the proportional seasonal contribution of C4 and C3 plant forms, of a range of ungulates in the Nama Karoo, at the Karoo NP and the arid Savanna, at the Tswalu Kalahari Reserve (Tswalu KR), using stable carbon isotope analysis. Fresh faecal samples of ungulate species were collected from both the biomes during the dry, early wet and late wet seasons. Species were categorised per biome into feeding guilds and the effects of season, biome and the interaction thereof on the diets of the ungulate species explored. Furthermore, the findings were interpreted against what is known about diets of the respective species elsewhere in southern and east Africa. Secondly, trends in ungulate population growth rates were assessed within the Karoo NP and the Tswalu KR over the past 12 and14 years respectively. Furthermore, the variables influencing ungulate population growth rates (and generality of trends), with emphasis on ungulate biomass and rainfall, were explored at biome and species level. Population size data were obtained from annual aerial censuses for the period 2002-2015 and used to calculate annual growth rates and biomass for each ungulate species. The contribution of C4 forage to the diets of ungulate species in the arid Savanna was generally higher than in the Nama Karoo,in line with greater relative abundance of C4 grasses in the former. During winter (dry season) C3 intake was higher in the Nama Karoo than in the arid Savanna, reflecting C3 plant growth (C3 grasses and shrubs) and rainfall during winter in the Nama Karoo. Mean population growth rates during the study period were negative in some of the threatened species considered, i.e. mountain reedbuck (Redunca fulvorufula fulvorufula), tsessebe (Damaliscus lunatus lunatus) and Hartmann’s mountain zebra (Equus zebra hartmannae). No evidence for negative density dependent regulation (~intra-/interspecific competition) of ungulate population growth rates was found, whereas bottom up (~rainfall) and positive density dependent (~biomass of the species under investigation) regulatory mechanisms were most influential. The rainfall and biomass variables influenced the population growth rates of smaller ungulate species more than those of larger bodied ungulate species. Knowledge of ungulate diets will enable managers of protected areas to better understand how climate change, and resultant changes in relative abundances of plant growth forms, will influence specific ungulate species. The finding that increased population biomass positively influenced certain ungulate species’ growth rates has potential implications for management intervention as ungulate biomass is a variable that can be manipulated in protected areas. The reinforcement of existing mountain reedbuck, springbok and red hartebeest populations, specifically, at the Karoo NP and the Tswalu KR may counter their current negative growth rates in these two protected areas. Finally, the influence of protected area size and fencing, on ungulate vulnerability to predators (~top down) and forage quality (~bottom up) mechanisms in arid biomes needs to be further explored.
- Full Text:
- Date Issued: 2017
- Authors: Vermeulen, Mika Margaret
- Date: 2017
- Subjects: Ungulates -- South Africa Arid regions -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/15237 , vital:28189
- Description: Limited resources, extreme temperatures and predators are some of the stresses that are faced by ungulates in arid biomes. Understanding how these stressors influence ungulate feeding ecology and population growth rates is important for managers, as these could influence the persistence of ungulates in protected areas. An understanding of these stressors is especially relevant given the significant population declines in ungulate species globally. The Nama Karoo biome and the arid Savanna, an arid form of the Savanna biome, are both arid, but have distinct rainfall seasonality and vegetation structure and represent unique characteristics that need to be properly considered in their own regard. The literature on African ungulate feeding ecology covers a range of species and biomes from southern and east Africa, however, very little is known about ungulate dietary preferences in the Nama Karoo. Unexplained population declines in springbok (Antidorcas marsupialis) and red hartebeest (Alcelaphus buselaphus caama) have occurred at local scales across the Nama Karoo and the arid Savanna, most notably springbok population declines at the Karoo National Park (Karoo NP). This study sought to improve the understanding of ungulate feeding ecology and population growth rate responses in two arid biomes of South Africa. To achieve this, ungulate dietary composition was characterised, in terms of the proportional seasonal contribution of C4 and C3 plant forms, of a range of ungulates in the Nama Karoo, at the Karoo NP and the arid Savanna, at the Tswalu Kalahari Reserve (Tswalu KR), using stable carbon isotope analysis. Fresh faecal samples of ungulate species were collected from both the biomes during the dry, early wet and late wet seasons. Species were categorised per biome into feeding guilds and the effects of season, biome and the interaction thereof on the diets of the ungulate species explored. Furthermore, the findings were interpreted against what is known about diets of the respective species elsewhere in southern and east Africa. Secondly, trends in ungulate population growth rates were assessed within the Karoo NP and the Tswalu KR over the past 12 and14 years respectively. Furthermore, the variables influencing ungulate population growth rates (and generality of trends), with emphasis on ungulate biomass and rainfall, were explored at biome and species level. Population size data were obtained from annual aerial censuses for the period 2002-2015 and used to calculate annual growth rates and biomass for each ungulate species. The contribution of C4 forage to the diets of ungulate species in the arid Savanna was generally higher than in the Nama Karoo,in line with greater relative abundance of C4 grasses in the former. During winter (dry season) C3 intake was higher in the Nama Karoo than in the arid Savanna, reflecting C3 plant growth (C3 grasses and shrubs) and rainfall during winter in the Nama Karoo. Mean population growth rates during the study period were negative in some of the threatened species considered, i.e. mountain reedbuck (Redunca fulvorufula fulvorufula), tsessebe (Damaliscus lunatus lunatus) and Hartmann’s mountain zebra (Equus zebra hartmannae). No evidence for negative density dependent regulation (~intra-/interspecific competition) of ungulate population growth rates was found, whereas bottom up (~rainfall) and positive density dependent (~biomass of the species under investigation) regulatory mechanisms were most influential. The rainfall and biomass variables influenced the population growth rates of smaller ungulate species more than those of larger bodied ungulate species. Knowledge of ungulate diets will enable managers of protected areas to better understand how climate change, and resultant changes in relative abundances of plant growth forms, will influence specific ungulate species. The finding that increased population biomass positively influenced certain ungulate species’ growth rates has potential implications for management intervention as ungulate biomass is a variable that can be manipulated in protected areas. The reinforcement of existing mountain reedbuck, springbok and red hartebeest populations, specifically, at the Karoo NP and the Tswalu KR may counter their current negative growth rates in these two protected areas. Finally, the influence of protected area size and fencing, on ungulate vulnerability to predators (~top down) and forage quality (~bottom up) mechanisms in arid biomes needs to be further explored.
- Full Text:
- Date Issued: 2017
Foraging behaviour and thermal physiology of Cape sugarbirds: sex-specific responses to temperature
- Authors: Molepo, Mokgatla Jerry
- Date: 2017
- Subjects: Sexual dimorphism (Animals) , Sex differences Birds -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/19124 , vital:28775
- Description: Body size (Mb) determines an animal’s energy and water demands for thermoregulation. Sexual dimorphism in Mb is common across many species, but its physiological consequences (e.g. energy and water demands) remain poorly understood. In this study, I determined if the sexually dimorphic Cape Sugarbird (Promerops cafer)–males are up to 15% larger than females, show sex-specific foraging patterns and physiological responses. To determine intraspecific variability behavioural in response to temperature, I compared flower visitation rates between male and female Cape Sugarbirds at different times of the day, and among days that varied in maximum air temperature. A total of 1207 males and 561 females were observed. Female Cape Sugarbirds visited flowers more often and continued to feed especially on hot days. Males generally dominated flower resources throughout the day, except on hot days. I also compared physiological responses in EWL, RMR and Tb between males and females at high air temperatures. There were no significant differences between the two sexes. Aggression which was overlooked appeared to have a high influence on foraging behaviour of Cape Sugarbirds. These results suggest that female Cape Sugarbirds will be more prone to energy and water stress during hot and dry summers in the Fynbos region because of resource dominance by male Cape Sugarbirds. Endemic birds, such as the Cape Sugarbird, warrant a conservation priority, especially since they are the dominant pollinator of the Protea plants in the Fynbos biome. The findings of this study will provide insights into population persistence of Cape Sugarbirds in response to predicted heat waves and rise in global temperatures.
- Full Text:
- Date Issued: 2017
- Authors: Molepo, Mokgatla Jerry
- Date: 2017
- Subjects: Sexual dimorphism (Animals) , Sex differences Birds -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/19124 , vital:28775
- Description: Body size (Mb) determines an animal’s energy and water demands for thermoregulation. Sexual dimorphism in Mb is common across many species, but its physiological consequences (e.g. energy and water demands) remain poorly understood. In this study, I determined if the sexually dimorphic Cape Sugarbird (Promerops cafer)–males are up to 15% larger than females, show sex-specific foraging patterns and physiological responses. To determine intraspecific variability behavioural in response to temperature, I compared flower visitation rates between male and female Cape Sugarbirds at different times of the day, and among days that varied in maximum air temperature. A total of 1207 males and 561 females were observed. Female Cape Sugarbirds visited flowers more often and continued to feed especially on hot days. Males generally dominated flower resources throughout the day, except on hot days. I also compared physiological responses in EWL, RMR and Tb between males and females at high air temperatures. There were no significant differences between the two sexes. Aggression which was overlooked appeared to have a high influence on foraging behaviour of Cape Sugarbirds. These results suggest that female Cape Sugarbirds will be more prone to energy and water stress during hot and dry summers in the Fynbos region because of resource dominance by male Cape Sugarbirds. Endemic birds, such as the Cape Sugarbird, warrant a conservation priority, especially since they are the dominant pollinator of the Protea plants in the Fynbos biome. The findings of this study will provide insights into population persistence of Cape Sugarbirds in response to predicted heat waves and rise in global temperatures.
- Full Text:
- Date Issued: 2017
Gypsum deposits associated with the Whitehill Formation (Ecca Group) in the Steytlerville-Jansenville Area, Southern Karoo, South Africa
- Authors: Almanza, Roberto Daniel
- Date: 2017
- Subjects: Gypsum -- South Africa Concretions -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/15292 , vital:28215
- Description: The Steyterville-Jansenville gypsum field is one of South Africa’s smaller deposits, yet plays host to several gypsum mines, both past and present. This study aims to deconstruct the processes involved in the precipitation of various quantities and grades of gypsum in the lower Ecca Group of the Karoo Supergroup. The calcium and sulphate ions required to form the gypsum mineral (CaSO4•2H2O) are derived from the mid- to lower-shale of the Whitehill Formation, which is carbonate- and pyrite-rich. Gypsum formation is dependent on the availability of pyrite as opposed to calcite, which is in abundance throughout the 30m thick, Early Ufimian (late Permian) Whitehill Formation. Weathered shale, which has been folded and faulted, forms the host environment in which gypsum has precipitated. Folding of the shale occurs as a series of large- and medium-scale anticlines and synclines that strike east to west. These structures, which formed during the Cape Orogeny indicate that stresses were exerted from the south-southwest towards the north-northeast. Folded calcite veins surrounded by amorphous pyrite, observed in thin section suggest that pyrite and calcite were precipitated together prior to a deformation event. Oxidation of pyrite following these deformation events results in the concentration of sulphides within the hinge zones of the folds (weakest zone) and this is where the larger gypsum deposits are found at the surface. Carbonate concretions in the Whitehill Formation up to 5m in length and 3m in width are common in the study area, and suggest a relationship with the deposition of the shale whereby calcium-rich nuclei grew in a concentric fashion during a non-depositional hiatus period. This period is also associated with a higher concentration of pyrite and could explain the occurrence of concretions together with adjacent gypsum-rich shale. Pyrite framboids observed under the Scanning Electron Microscope (SEM) provide evidence to suggest concentric growth of initially deposited microcrystals including nucleation and growth of nodules and concretions observed within the Whitehill Formation. Prerequisites for gypsum formation also include restricted drainage such as a pan, a clay layer in the drainage area and an arid climate where evaporation exceeds precipitation. The preferred surface conditions for gypsum formation would be low-lying areas which are surrounded by gently-sloping topography promoting the concentration of aqueous solutions in a calcite- and pyrite-rich area. Groundwater solution would initially dissolve the calcite and clay minerals, and pyrite and the quartz minerals would remain in the host rock. Areas with greater calcite and clay pores would accommodate more groundwater and thus promote a greater surface area for chemical reactions. This enhances the potential for the oxidation of pyrite to form sulphate ions, which can later combine with calcium ions to precipitate gypsum crystals. Alternatively, the oxidation of pyrite, which produces acidity, dissolves the carbonate host and the calcium- and sulphate-rich solution then precipitates gypsum. The combination of the structural and geomorphological processes is key to the formation of economic gypsum deposits. The potential for extensive gypsum reserves within the Steytlerville-Jansenville field remains valid, provided the target is located over a predominantly weathered Whitehill Formation outcrop, preferably in an area which has undergone extensive deformation (such as a fold hinge zone), and is favourable for the concentration of ground and surface water within a low-lying area.
- Full Text:
- Date Issued: 2017
- Authors: Almanza, Roberto Daniel
- Date: 2017
- Subjects: Gypsum -- South Africa Concretions -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/15292 , vital:28215
- Description: The Steyterville-Jansenville gypsum field is one of South Africa’s smaller deposits, yet plays host to several gypsum mines, both past and present. This study aims to deconstruct the processes involved in the precipitation of various quantities and grades of gypsum in the lower Ecca Group of the Karoo Supergroup. The calcium and sulphate ions required to form the gypsum mineral (CaSO4•2H2O) are derived from the mid- to lower-shale of the Whitehill Formation, which is carbonate- and pyrite-rich. Gypsum formation is dependent on the availability of pyrite as opposed to calcite, which is in abundance throughout the 30m thick, Early Ufimian (late Permian) Whitehill Formation. Weathered shale, which has been folded and faulted, forms the host environment in which gypsum has precipitated. Folding of the shale occurs as a series of large- and medium-scale anticlines and synclines that strike east to west. These structures, which formed during the Cape Orogeny indicate that stresses were exerted from the south-southwest towards the north-northeast. Folded calcite veins surrounded by amorphous pyrite, observed in thin section suggest that pyrite and calcite were precipitated together prior to a deformation event. Oxidation of pyrite following these deformation events results in the concentration of sulphides within the hinge zones of the folds (weakest zone) and this is where the larger gypsum deposits are found at the surface. Carbonate concretions in the Whitehill Formation up to 5m in length and 3m in width are common in the study area, and suggest a relationship with the deposition of the shale whereby calcium-rich nuclei grew in a concentric fashion during a non-depositional hiatus period. This period is also associated with a higher concentration of pyrite and could explain the occurrence of concretions together with adjacent gypsum-rich shale. Pyrite framboids observed under the Scanning Electron Microscope (SEM) provide evidence to suggest concentric growth of initially deposited microcrystals including nucleation and growth of nodules and concretions observed within the Whitehill Formation. Prerequisites for gypsum formation also include restricted drainage such as a pan, a clay layer in the drainage area and an arid climate where evaporation exceeds precipitation. The preferred surface conditions for gypsum formation would be low-lying areas which are surrounded by gently-sloping topography promoting the concentration of aqueous solutions in a calcite- and pyrite-rich area. Groundwater solution would initially dissolve the calcite and clay minerals, and pyrite and the quartz minerals would remain in the host rock. Areas with greater calcite and clay pores would accommodate more groundwater and thus promote a greater surface area for chemical reactions. This enhances the potential for the oxidation of pyrite to form sulphate ions, which can later combine with calcium ions to precipitate gypsum crystals. Alternatively, the oxidation of pyrite, which produces acidity, dissolves the carbonate host and the calcium- and sulphate-rich solution then precipitates gypsum. The combination of the structural and geomorphological processes is key to the formation of economic gypsum deposits. The potential for extensive gypsum reserves within the Steytlerville-Jansenville field remains valid, provided the target is located over a predominantly weathered Whitehill Formation outcrop, preferably in an area which has undergone extensive deformation (such as a fold hinge zone), and is favourable for the concentration of ground and surface water within a low-lying area.
- Full Text:
- Date Issued: 2017
How phase feeding manipulation affects growth, performance, feed cost, carcass characteristics and the quality of meat from broilers
- Authors: Sokanyile, Sanda
- Date: 2017
- Subjects: Animal nutrition , Feeds , Broilers (Chickens)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/5565 , vital:29334
- Description: The main objective of the study was to determine how phase feeding manipulation affects growth performance, feed cost, carcass characteristics and quality of meat from broiler chickens. A total of 180 day old un-sexed broiler chicks (Cobb 500) were separated into 3 dietary treatments of 60 birds per treatment and each treatment was replicated 3 times with 20 birds per replicate. The dietary treatments were as follows: T1 (starter 1-7 days; grower 8-21 days; finisher 22-35 days), T2 (starter 1-14 days; grower 15-21 days, finisher 22-35 days) and T3 (starter 1-14 days; grower 15-28 days; finisher 29-35 days). Feed intake and body weight gains were recorded weekly in kilograms. Average daily gain and feed conversion ratio were computed weekly. At day 35, the chickens were slaughtered and 12 representative breast muscles from each treatment were used for the determination of muscle pH (pH1, pH24 and pH48) and colour coordinates (Lightness – L*, redness – a* and yellowness – b*) in triplicate at 1 hour, 24 hours and 48 hours post-mortem.Feed intake (FI), feed conversion ratio (FCR), average daily gain (ADG) and average body weight at slaughter (ABW) were not significant (P>0.05) amongst the treatments. The most cost efficient feed (which accumulated the cheapest cost feed per kg were) T1 (R11.32) and T3 (R11.32) although there was a slight difference in the gross profit of these treatments T1 (R45.71) and T3 (R44.48). Carcass characteristics were the same (P > 0.05) across the treatments except for the wing, thigh, drumstick and the breast (P < 0.05). T2 had the highest wing weight (166.63±8.60), T1 (113.03±8.60) and the lowest in T3 (74.46±8.60). The thigh weight were greater (P<0.05) in T2 (185.69±4.34); T1 (185.54±4.34) compared to T3 (166.97±4.34) which was lower. Treatments 1 (204.17±6.57), T2 (197±6.57) had heavier (P<0.05) breast weights than T3 (186.06±6.57). Dietary treatments had no significant effect (P > 0.05) on pH of the breast meat. No differences were observed in colour during the 1 hour period after slaughter. At 24 hours after slaughter, the L* values were different (P < 0.05) in T1 and T2 (44.3 ± 0.37; 43.7 ± 0.37), respectively, T1 and T3 were the same. The a*-values were different (P < 0.05) at 48 hours after slaughter for T1 and T3 (4.5 ± 0.27; 3.4 ± 0.27), T2 was the same as T1. It was therefore, concluded that since manipulation of starter phase did not have adverse effects on growth performance, gross profit, slight statistical difference in meat quality attributes and carcass characteristics. Therefore, the manipulation of starter diet has the potential to be used in broiler production.
- Full Text:
- Date Issued: 2017
- Authors: Sokanyile, Sanda
- Date: 2017
- Subjects: Animal nutrition , Feeds , Broilers (Chickens)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/5565 , vital:29334
- Description: The main objective of the study was to determine how phase feeding manipulation affects growth performance, feed cost, carcass characteristics and quality of meat from broiler chickens. A total of 180 day old un-sexed broiler chicks (Cobb 500) were separated into 3 dietary treatments of 60 birds per treatment and each treatment was replicated 3 times with 20 birds per replicate. The dietary treatments were as follows: T1 (starter 1-7 days; grower 8-21 days; finisher 22-35 days), T2 (starter 1-14 days; grower 15-21 days, finisher 22-35 days) and T3 (starter 1-14 days; grower 15-28 days; finisher 29-35 days). Feed intake and body weight gains were recorded weekly in kilograms. Average daily gain and feed conversion ratio were computed weekly. At day 35, the chickens were slaughtered and 12 representative breast muscles from each treatment were used for the determination of muscle pH (pH1, pH24 and pH48) and colour coordinates (Lightness – L*, redness – a* and yellowness – b*) in triplicate at 1 hour, 24 hours and 48 hours post-mortem.Feed intake (FI), feed conversion ratio (FCR), average daily gain (ADG) and average body weight at slaughter (ABW) were not significant (P>0.05) amongst the treatments. The most cost efficient feed (which accumulated the cheapest cost feed per kg were) T1 (R11.32) and T3 (R11.32) although there was a slight difference in the gross profit of these treatments T1 (R45.71) and T3 (R44.48). Carcass characteristics were the same (P > 0.05) across the treatments except for the wing, thigh, drumstick and the breast (P < 0.05). T2 had the highest wing weight (166.63±8.60), T1 (113.03±8.60) and the lowest in T3 (74.46±8.60). The thigh weight were greater (P<0.05) in T2 (185.69±4.34); T1 (185.54±4.34) compared to T3 (166.97±4.34) which was lower. Treatments 1 (204.17±6.57), T2 (197±6.57) had heavier (P<0.05) breast weights than T3 (186.06±6.57). Dietary treatments had no significant effect (P > 0.05) on pH of the breast meat. No differences were observed in colour during the 1 hour period after slaughter. At 24 hours after slaughter, the L* values were different (P < 0.05) in T1 and T2 (44.3 ± 0.37; 43.7 ± 0.37), respectively, T1 and T3 were the same. The a*-values were different (P < 0.05) at 48 hours after slaughter for T1 and T3 (4.5 ± 0.27; 3.4 ± 0.27), T2 was the same as T1. It was therefore, concluded that since manipulation of starter phase did not have adverse effects on growth performance, gross profit, slight statistical difference in meat quality attributes and carcass characteristics. Therefore, the manipulation of starter diet has the potential to be used in broiler production.
- Full Text:
- Date Issued: 2017
Impacts of African elephant feeding on white rhinoceros foraging opportunities
- Authors: Prinsloo, Dominique
- Date: 2017
- Subjects: Herbivores -- Ecology -- South Africa , Grassland ecology -- South Africa Animal-plant relationships -- South Africa Ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/13768 , vital:27306
- Description: In this study, I investigated the interaction between two megaherbivores, the African elephant and white rhinoceros, that has the potential to impact grazing lawns of which white rhino are the creators and maintainers and elephants are potentially the modifiers. I hypothesized that as elephants browse, they discard a variety of coarse woody debris onto the ground; should this woody debris (of varying amounts and sizes) fall onto grazing lawns, white rhino either move them, consume grass around the woody debris or abandon the lawn entirely. If high levels of woody debris are deposited here, grazing by white rhino is likely to be prevented, at which time I predicted that mesoherbivores would have a competitive advantage in accessing forage that white rhino cannot. I examined the mechanistic links between different levels of elephant-deposited woody debris and grass response at a point scale and feeding patch spatial scale of grazing lawns in an African savanna. In addition, I assessed the response of mesoherbivores in terms of vigilance behaviour with increasing levels of predation risk posed by increasing levels of woody debris. I present the first evidence of an indirect effect of elephant on white rhino foraging behaviour. I demonstrate how increasing levels of woody debris lead to a decreasing probability of foraging by white rhino. I also demonstrate how the probability of foraging by mesoherbivores increases as the amount of forage increases. However, since this study took place during a severe drought where resources are extremely limited, I was unable to properly separate the effects of elephant-deposited woody debris from the severe lack of rainfall on grass response and subsequently herbivore foraging behaviour. Due possibly to the drought, mesoherbivores responded less or not at all to risk factors such as woody debris therefore woody debris was not a predictor of vigilance behaviour in my study. This study contributes to our understanding of how the impacts of elephants, as ecosystem engineers, have cascading effects on savanna ecosystems. My study showed that elephant impact mediates the foraging behaviour of white rhino during a drought. However, under average rainfall periods, my original hypothesized effect of the indirect impacts of elephants on white rhino foraging and grazing lawn dynamics could still hold. This key hypothesis that I was unable to test under ‘normal’ conditions due to the drought is still valid and functionally important for understanding the ecosystem processes driving grazing lawn formation, persistence and composition in African savannas where elephants and white rhinos coexist.
- Full Text:
- Date Issued: 2017
- Authors: Prinsloo, Dominique
- Date: 2017
- Subjects: Herbivores -- Ecology -- South Africa , Grassland ecology -- South Africa Animal-plant relationships -- South Africa Ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/13768 , vital:27306
- Description: In this study, I investigated the interaction between two megaherbivores, the African elephant and white rhinoceros, that has the potential to impact grazing lawns of which white rhino are the creators and maintainers and elephants are potentially the modifiers. I hypothesized that as elephants browse, they discard a variety of coarse woody debris onto the ground; should this woody debris (of varying amounts and sizes) fall onto grazing lawns, white rhino either move them, consume grass around the woody debris or abandon the lawn entirely. If high levels of woody debris are deposited here, grazing by white rhino is likely to be prevented, at which time I predicted that mesoherbivores would have a competitive advantage in accessing forage that white rhino cannot. I examined the mechanistic links between different levels of elephant-deposited woody debris and grass response at a point scale and feeding patch spatial scale of grazing lawns in an African savanna. In addition, I assessed the response of mesoherbivores in terms of vigilance behaviour with increasing levels of predation risk posed by increasing levels of woody debris. I present the first evidence of an indirect effect of elephant on white rhino foraging behaviour. I demonstrate how increasing levels of woody debris lead to a decreasing probability of foraging by white rhino. I also demonstrate how the probability of foraging by mesoherbivores increases as the amount of forage increases. However, since this study took place during a severe drought where resources are extremely limited, I was unable to properly separate the effects of elephant-deposited woody debris from the severe lack of rainfall on grass response and subsequently herbivore foraging behaviour. Due possibly to the drought, mesoherbivores responded less or not at all to risk factors such as woody debris therefore woody debris was not a predictor of vigilance behaviour in my study. This study contributes to our understanding of how the impacts of elephants, as ecosystem engineers, have cascading effects on savanna ecosystems. My study showed that elephant impact mediates the foraging behaviour of white rhino during a drought. However, under average rainfall periods, my original hypothesized effect of the indirect impacts of elephants on white rhino foraging and grazing lawn dynamics could still hold. This key hypothesis that I was unable to test under ‘normal’ conditions due to the drought is still valid and functionally important for understanding the ecosystem processes driving grazing lawn formation, persistence and composition in African savannas where elephants and white rhinos coexist.
- Full Text:
- Date Issued: 2017
Influence of sedimentological and hydrological processes on the distribution of the Spartina maritima salt marsh in the Keurbooms Estuary, Western Cape
- Authors: Mfikili, Athi Nkosibonile
- Date: 2017
- Subjects: Salt marshes -- South Africa -- Western Cape Estuarine hydrology -- South Africa -- Western Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/13004 , vital:27143
- Description: Salt marshes are some of the most productive ecosystems in the world and have been the centre of attention over the past few decades, due to their decline as a result of global climate change and anthropogenic impacts. The growth of salt marshes is determined by substrate type, soil conductivity and elevation. The permanently open Keurbooms Estuary along the south-east coast of South Africa is subjected to occasional fluvial flooding and its intertidal area lacks well developed salt marshes, with Spartina maritima restricted to the lower reaches of the Bitou tributary and a few sections of the Keurbooms tributary. Presumeably because of fine sediment habitat in the confluence and lower Bitou tributary. The salinity of the estuarine water ranges between 0.1 – 26.9 and 3.2 – 35.3 in the Bitou and Keurbooms tributaries respectively. A typical salt wedge salinity pattern is common in the Keurbooms tributary where saline water often intrudes underneath the freshwater, especially during high river flows. The following hypotheses were developed and tested in this study: The limited spatial distribution of S. maritima in the Keurbooms Estuary is due to limited availability of fine sediment habitat; and the source of the fine sediment in the estuary is the Bitou tributary rather than the Keurbooms tributary or the sea. It was further postulated that after sediment characteristics, floods are the major hydrological driver determining the distribution of S. maritima in the Keurbooms Estuary. The results of the surveys of the estuarine channel bottom sediments showed that the Keurbooms tributary was mostly characterized by the sand-size sediment fraction derived from the feldspathic and sandstone with evidence of fine sediment fractions restricted to the upper reaches at the confluence with Whiskey Creek. The Bitou was almost always composed of coarse sized sediments in the upper reaches, fine sediment deposits in the middle and lower reaches and medium sorted sand with almost no clay or calcium carbonate in the estuarine component below the confluence of the tributaries. These findings were further supported by the surface sediment deposited within the S. maritima intertidal salt marsh, which showed finer sediment deposits in the Bitou marsh compared to the Keurbooms marsh surface. Similar results were also found in the sediment cores, with the Keurbooms marsh sediment becoming finer with increasing depth whereas fine sediments reduced with depth in the Bitou marsh. The results of the sediment mineralogy indicated that the increased concentrations of clay minerals in the S. maritima surface sediments are derived from the Bokkeveld shale, siltstone and clay slate exposed above the N2 Bridge in the Keurbooms Estuary. GIS mapping shows that S. maritima has been declining over the past two decades, with rapid decreases especially evident after big flooding events. The GIS mapping also indicates that the patches of the S. maritima in the Keurbooms tributary are more exposed to big floods than the Bitou marsh. Despite showing an overall decline, S. maritima area coverage remained more consistent in the lower reaches of the Bitou tributary than in the Keurbooms tributary. Despite the larger and more persistent area cover, the S. maritima plants were shorter and less dense than the plants growing in the sandy substrate. The black/grey colouration of soil with increasing depth in the Bitou tributary was an indication of the reduced state of the soil caused by prolonged waterlogged conditions. The roots of S. maritima in both tributaries were mostly restricted to the sub-surface substrate layer (i.e. 0 – 0.25 m), although the Bitou populations showed more vegetative propagation than the Keurbooms populations. This mechanism of reproduction was also demonstrated during the transplant experiment which showed a greater number of new stem production in the fine sediment substrates compared to the sandy silt substrates. Although accretion rates were not determined in this study, the short-term sediment deposition rates revealed that sedimentation is active in the marshes of the Keurbooms Estuary. Therefore, in spite of showing a decline in area cover, the production of viable seed and observed vegetative propagation suggest that the S. maritima is likely to colonize open stable intertidal mudflats / sandflats, thus maintaining its distribution as an intertidal species in the salt marshes of the Keurbooms Estuary.
- Full Text:
- Date Issued: 2017
- Authors: Mfikili, Athi Nkosibonile
- Date: 2017
- Subjects: Salt marshes -- South Africa -- Western Cape Estuarine hydrology -- South Africa -- Western Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/13004 , vital:27143
- Description: Salt marshes are some of the most productive ecosystems in the world and have been the centre of attention over the past few decades, due to their decline as a result of global climate change and anthropogenic impacts. The growth of salt marshes is determined by substrate type, soil conductivity and elevation. The permanently open Keurbooms Estuary along the south-east coast of South Africa is subjected to occasional fluvial flooding and its intertidal area lacks well developed salt marshes, with Spartina maritima restricted to the lower reaches of the Bitou tributary and a few sections of the Keurbooms tributary. Presumeably because of fine sediment habitat in the confluence and lower Bitou tributary. The salinity of the estuarine water ranges between 0.1 – 26.9 and 3.2 – 35.3 in the Bitou and Keurbooms tributaries respectively. A typical salt wedge salinity pattern is common in the Keurbooms tributary where saline water often intrudes underneath the freshwater, especially during high river flows. The following hypotheses were developed and tested in this study: The limited spatial distribution of S. maritima in the Keurbooms Estuary is due to limited availability of fine sediment habitat; and the source of the fine sediment in the estuary is the Bitou tributary rather than the Keurbooms tributary or the sea. It was further postulated that after sediment characteristics, floods are the major hydrological driver determining the distribution of S. maritima in the Keurbooms Estuary. The results of the surveys of the estuarine channel bottom sediments showed that the Keurbooms tributary was mostly characterized by the sand-size sediment fraction derived from the feldspathic and sandstone with evidence of fine sediment fractions restricted to the upper reaches at the confluence with Whiskey Creek. The Bitou was almost always composed of coarse sized sediments in the upper reaches, fine sediment deposits in the middle and lower reaches and medium sorted sand with almost no clay or calcium carbonate in the estuarine component below the confluence of the tributaries. These findings were further supported by the surface sediment deposited within the S. maritima intertidal salt marsh, which showed finer sediment deposits in the Bitou marsh compared to the Keurbooms marsh surface. Similar results were also found in the sediment cores, with the Keurbooms marsh sediment becoming finer with increasing depth whereas fine sediments reduced with depth in the Bitou marsh. The results of the sediment mineralogy indicated that the increased concentrations of clay minerals in the S. maritima surface sediments are derived from the Bokkeveld shale, siltstone and clay slate exposed above the N2 Bridge in the Keurbooms Estuary. GIS mapping shows that S. maritima has been declining over the past two decades, with rapid decreases especially evident after big flooding events. The GIS mapping also indicates that the patches of the S. maritima in the Keurbooms tributary are more exposed to big floods than the Bitou marsh. Despite showing an overall decline, S. maritima area coverage remained more consistent in the lower reaches of the Bitou tributary than in the Keurbooms tributary. Despite the larger and more persistent area cover, the S. maritima plants were shorter and less dense than the plants growing in the sandy substrate. The black/grey colouration of soil with increasing depth in the Bitou tributary was an indication of the reduced state of the soil caused by prolonged waterlogged conditions. The roots of S. maritima in both tributaries were mostly restricted to the sub-surface substrate layer (i.e. 0 – 0.25 m), although the Bitou populations showed more vegetative propagation than the Keurbooms populations. This mechanism of reproduction was also demonstrated during the transplant experiment which showed a greater number of new stem production in the fine sediment substrates compared to the sandy silt substrates. Although accretion rates were not determined in this study, the short-term sediment deposition rates revealed that sedimentation is active in the marshes of the Keurbooms Estuary. Therefore, in spite of showing a decline in area cover, the production of viable seed and observed vegetative propagation suggest that the S. maritima is likely to colonize open stable intertidal mudflats / sandflats, thus maintaining its distribution as an intertidal species in the salt marshes of the Keurbooms Estuary.
- Full Text:
- Date Issued: 2017
Multi-temporal analysis of urban land-use and land-cover patterns in Alice, Eastern Cape Province, South Africa
- Authors: Manyanye, Owen
- Date: 2017
- Subjects: Geographic information systems Land use -- Remote sensing Land cover
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8066 , vital:31506
- Description: South Africa is undergoing rapid urbanization coupled with fast demographic change in the major cities and towns. This economic shift leaves behind underdevelopment, particularly in the rural areas such as the Eastern Cape Province. Underdevelopment of rural Eastern Cape can be understood by revisiting the “native reserve policy” of the Union of South Africa (1910 –1948) and the separate development policies of the apartheid government (1948 –1994). These policies have induced landlessness in the rural Eastern Cape and the destruction of rural livelihoods, poverty and under-development of roads, housing, health, education and sanitation facilities, and constrained development of a sustainable local economy. This study was aimed at determining the temporal and spatial land-use / land-cover changes in and around Alice town in the Eastern Cape Province of South Africa by using multi-date remotely Landsat TM images covering 5 time slices for the years 1984, 1989, 1994, 1999 and 2009. This was done by using supervised classification to objectively reconstruct changes in land-use and land-cover by compiling time-series maps with four information classes and using the Kappa Coefficient to assess the accuracy of all map outputs. Results of this investigation point to significant changes in land-use and land-cover over the 25-year study period between 1984 and 2009 with built-up areas expanding by 3720 hectares from 3227 hectares in 1984 to 6947 hectares in 2009. This observation is important because it enhances our understanding of the dynamics of urban growth and provides useful insights that aid urban development planning and policy formulation. The research concludes by recommending the use time series remotely sensed imagery as a decision-support tool for urban and environment management.
- Full Text:
- Date Issued: 2017
- Authors: Manyanye, Owen
- Date: 2017
- Subjects: Geographic information systems Land use -- Remote sensing Land cover
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8066 , vital:31506
- Description: South Africa is undergoing rapid urbanization coupled with fast demographic change in the major cities and towns. This economic shift leaves behind underdevelopment, particularly in the rural areas such as the Eastern Cape Province. Underdevelopment of rural Eastern Cape can be understood by revisiting the “native reserve policy” of the Union of South Africa (1910 –1948) and the separate development policies of the apartheid government (1948 –1994). These policies have induced landlessness in the rural Eastern Cape and the destruction of rural livelihoods, poverty and under-development of roads, housing, health, education and sanitation facilities, and constrained development of a sustainable local economy. This study was aimed at determining the temporal and spatial land-use / land-cover changes in and around Alice town in the Eastern Cape Province of South Africa by using multi-date remotely Landsat TM images covering 5 time slices for the years 1984, 1989, 1994, 1999 and 2009. This was done by using supervised classification to objectively reconstruct changes in land-use and land-cover by compiling time-series maps with four information classes and using the Kappa Coefficient to assess the accuracy of all map outputs. Results of this investigation point to significant changes in land-use and land-cover over the 25-year study period between 1984 and 2009 with built-up areas expanding by 3720 hectares from 3227 hectares in 1984 to 6947 hectares in 2009. This observation is important because it enhances our understanding of the dynamics of urban growth and provides useful insights that aid urban development planning and policy formulation. The research concludes by recommending the use time series remotely sensed imagery as a decision-support tool for urban and environment management.
- Full Text:
- Date Issued: 2017
Multi-temporal assessment of spatial changes in vegetation distribution in the Swartkops estuary, Port Elizabeth, Eastern Cape, South Africa
- Authors: Atyosi, Yonwaba
- Date: 2017
- Subjects: Climatic changes -- South Africa -- Eastern Cape Environmental impact analysis Estuaries -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/13762 , vital:39710
- Description: Over the last decade, image classification has been widely used as a change detection method and provides detailed information for detecting and monitoring changes in land use and land cover (LULC). The main objective of this study was to reconstruct long-term changes in the spatial distribution of different vegetation types in the Swartkops Estuary from 1983 to 2013. The Swartkops Estuary is ecologically important for its wide range of vegetation types that are habitat to estuarine and riverine organisms. Four Landsat images for the years 1984 (Thematic Mapper), 1993 (Thematic Mapper), 2003(Enhanced Thematic Mapper +) and 2013 (Operational Land Imager) were used with the aid of aerial photographs that were used as an ancillary data source. The research methodology comprised of supervised classification, classification accuracy assessment and image differencing. Supervised classification was performed and results of the image classification process for the four time periods were compared to derive information on changes that occurred over the 29-year study period. Images were classified into the following classes: Estuarine water, Salt works, Zostera capensis, Spartina maritima, Terrestrial vegetation, Salt marsh, Swartkops thicket, Built-up areas, Bare areas, and Beach sand, using the Maximum likelihood classifier on Erdas IMAGINE 2014 Software. The significance of the image classification was tested using linear trend regression analysis. Image differencing was performed using 1984 and 2013 Landsat images to reconstruct overall changes in vegetation distribution of the Swartkops Estuary. Results of this investigation revealed significant changes in all land cover types, 24 ha increase from 1984 to 2013 in Zostera capensis as well as Spartina maritima, salt marshes increased by 14 ha between 1984 and 2013, terrestrial vegetation declined by 18 ha between 1984 and 2013. There was a stable increase in estuarine water from 1984 to 2013 by a total area of 29 ha. Water increased by 14 ha between 1984 and 1993, 11 ha increase between 1993 and 2003. However, there was a decline in estuarine water in the period between 2003 and 2013.This decline is associated with the increase in submerged macrophytes like Zostera capensis which utilise open water habitat. The dominant salt marsh species Limonium peregrinum, Sarcoconia pillansii and Spartina maritima occurred in the intertidal, supratidal and floodplain areas where the water table was the shallowest, with the soil moisture being the highest. These results indicate that Remote Sensing and GIS can be effectively used to detect and monitor changes in estuarine biodiversity and habitat in South Africa.
- Full Text:
- Date Issued: 2017
- Authors: Atyosi, Yonwaba
- Date: 2017
- Subjects: Climatic changes -- South Africa -- Eastern Cape Environmental impact analysis Estuaries -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/13762 , vital:39710
- Description: Over the last decade, image classification has been widely used as a change detection method and provides detailed information for detecting and monitoring changes in land use and land cover (LULC). The main objective of this study was to reconstruct long-term changes in the spatial distribution of different vegetation types in the Swartkops Estuary from 1983 to 2013. The Swartkops Estuary is ecologically important for its wide range of vegetation types that are habitat to estuarine and riverine organisms. Four Landsat images for the years 1984 (Thematic Mapper), 1993 (Thematic Mapper), 2003(Enhanced Thematic Mapper +) and 2013 (Operational Land Imager) were used with the aid of aerial photographs that were used as an ancillary data source. The research methodology comprised of supervised classification, classification accuracy assessment and image differencing. Supervised classification was performed and results of the image classification process for the four time periods were compared to derive information on changes that occurred over the 29-year study period. Images were classified into the following classes: Estuarine water, Salt works, Zostera capensis, Spartina maritima, Terrestrial vegetation, Salt marsh, Swartkops thicket, Built-up areas, Bare areas, and Beach sand, using the Maximum likelihood classifier on Erdas IMAGINE 2014 Software. The significance of the image classification was tested using linear trend regression analysis. Image differencing was performed using 1984 and 2013 Landsat images to reconstruct overall changes in vegetation distribution of the Swartkops Estuary. Results of this investigation revealed significant changes in all land cover types, 24 ha increase from 1984 to 2013 in Zostera capensis as well as Spartina maritima, salt marshes increased by 14 ha between 1984 and 2013, terrestrial vegetation declined by 18 ha between 1984 and 2013. There was a stable increase in estuarine water from 1984 to 2013 by a total area of 29 ha. Water increased by 14 ha between 1984 and 1993, 11 ha increase between 1993 and 2003. However, there was a decline in estuarine water in the period between 2003 and 2013.This decline is associated with the increase in submerged macrophytes like Zostera capensis which utilise open water habitat. The dominant salt marsh species Limonium peregrinum, Sarcoconia pillansii and Spartina maritima occurred in the intertidal, supratidal and floodplain areas where the water table was the shallowest, with the soil moisture being the highest. These results indicate that Remote Sensing and GIS can be effectively used to detect and monitor changes in estuarine biodiversity and habitat in South Africa.
- Full Text:
- Date Issued: 2017
Perceptions and livelihood uses of an invasive alien tree (acacia dealbata) by rural communities in the Eastern Cape
- Authors: Agripa, Ngorima
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5326 , vital:20813
- Description: The negative impacts which invasive alien species have on ecosystems are well documented but there is paucity of information on their impacts on rural communities. Due to ecological impacts that may be associated with Acacia dealbata invasions the Agricultural Research Council Plant Protection Institute is considering releasing a biocontrol agent for A. dealbata. The actual social impacts of A. dealbata invasion and control are likely to be related to its importance in rural livelihoods. This thesis reports on the perceptions and livelihood uses of A. dealbata in the Eastern Cape. Three study sites were assessed, Matatiele, Mount Fletcher and Maclear. The study involved 150 household surveys, one focus group discussion and one transect walk at each site, key informant interviews and frequent house visits to acquire reliable data. Results show that 100 % of households in the three sites use Silver Wattle extensively for firewood. In Matatiele 64 %, 72 % in Mount Fletcher and 84 % of households in Maclear use Silver Wattle for fencing. To carve tools 76 % in Matatiele, 76 % in Mount Fletcher and 84 % households in Maclear use Silver Wattle. For medicinal purposes 18 % in Matatiele, 20 % in Mount Fletcher and 16 % in Maclear use Silver Wattle, whilst 78 % in Matatiele, 80 % in Mount Fletcher and 80 % in Maclear use it for fodder purposes. Many respondents felt that Silver Wattle is too abundant within their areas such that it now has many negative impacts associated with it. Perceptions of local people towards A. dealbata are neither static nor uniform, but are influenced by time since the invasion and now abundance of the species. There are no alternatives which provide the same services provided by Silver Wattle. Benefits and constraints due to A. dealbata invasion are experienced by everyone irrespective of wealth and gender. In conclusion, Silver Wattle is a valuable resource to these rural communities, but increasing abundance is incurring high costs to grazing resources and landscape accessibility.
- Full Text:
- Date Issued: 2017
- Authors: Agripa, Ngorima
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5326 , vital:20813
- Description: The negative impacts which invasive alien species have on ecosystems are well documented but there is paucity of information on their impacts on rural communities. Due to ecological impacts that may be associated with Acacia dealbata invasions the Agricultural Research Council Plant Protection Institute is considering releasing a biocontrol agent for A. dealbata. The actual social impacts of A. dealbata invasion and control are likely to be related to its importance in rural livelihoods. This thesis reports on the perceptions and livelihood uses of A. dealbata in the Eastern Cape. Three study sites were assessed, Matatiele, Mount Fletcher and Maclear. The study involved 150 household surveys, one focus group discussion and one transect walk at each site, key informant interviews and frequent house visits to acquire reliable data. Results show that 100 % of households in the three sites use Silver Wattle extensively for firewood. In Matatiele 64 %, 72 % in Mount Fletcher and 84 % of households in Maclear use Silver Wattle for fencing. To carve tools 76 % in Matatiele, 76 % in Mount Fletcher and 84 % households in Maclear use Silver Wattle. For medicinal purposes 18 % in Matatiele, 20 % in Mount Fletcher and 16 % in Maclear use Silver Wattle, whilst 78 % in Matatiele, 80 % in Mount Fletcher and 80 % in Maclear use it for fodder purposes. Many respondents felt that Silver Wattle is too abundant within their areas such that it now has many negative impacts associated with it. Perceptions of local people towards A. dealbata are neither static nor uniform, but are influenced by time since the invasion and now abundance of the species. There are no alternatives which provide the same services provided by Silver Wattle. Benefits and constraints due to A. dealbata invasion are experienced by everyone irrespective of wealth and gender. In conclusion, Silver Wattle is a valuable resource to these rural communities, but increasing abundance is incurring high costs to grazing resources and landscape accessibility.
- Full Text:
- Date Issued: 2017
Performance and throughput rates of quantity surveying students: a cohort analysis
- Authors: Dent, Sharon Peta
- Date: 2017
- Subjects: Cohort analysis Quantity surveying
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17581 , vital:28382
- Description: Performance and throughput rates at South African tertiary institutions are low, especially within the science, engineering and technology fields of study. The causes of this poor performance and throughput are difficult to predict, and incorrect assumptions are often made on which students are most likely to fail. The need to investigate this issue is vital in South Africa, where the contributing factors to poor performance and throughput are exacerbated by recent political and economic disparities in the diverse population. In order to better understand the issue within the built environment sector, this study evaluated the performance and throughput rates of fifteen first-year cohorts within the Department of Quantity Surveying at the Nelson Mandela Metropolitan University. The main aim of this study was to investigate the changes in the student population within the department, and to develop a framework for the future prediction of a student’s likelihood of success or failure. In order to achieve this objective, a retrospective longitudinal approach, i.e. a cohort study, was adopted. The study plotted the trends in performance and throughput rates over a period of time; it measured the strength of the relationships between several variables and performance and throughput; and it culminated in the establishment of predictors of performance and throughput rates. Ultimately, the prediction variables could be utilised in the development of influence diagrams as prediction frameworks. The research revealed that the performance and throughput rates of students in the department are improving. This highlights the importance of undertaking a narrow, departmental level analysis; as the findings in this smaller sphere do not match the general theory and assumptions covered in the literature.
- Full Text:
- Date Issued: 2017
- Authors: Dent, Sharon Peta
- Date: 2017
- Subjects: Cohort analysis Quantity surveying
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17581 , vital:28382
- Description: Performance and throughput rates at South African tertiary institutions are low, especially within the science, engineering and technology fields of study. The causes of this poor performance and throughput are difficult to predict, and incorrect assumptions are often made on which students are most likely to fail. The need to investigate this issue is vital in South Africa, where the contributing factors to poor performance and throughput are exacerbated by recent political and economic disparities in the diverse population. In order to better understand the issue within the built environment sector, this study evaluated the performance and throughput rates of fifteen first-year cohorts within the Department of Quantity Surveying at the Nelson Mandela Metropolitan University. The main aim of this study was to investigate the changes in the student population within the department, and to develop a framework for the future prediction of a student’s likelihood of success or failure. In order to achieve this objective, a retrospective longitudinal approach, i.e. a cohort study, was adopted. The study plotted the trends in performance and throughput rates over a period of time; it measured the strength of the relationships between several variables and performance and throughput; and it culminated in the establishment of predictors of performance and throughput rates. Ultimately, the prediction variables could be utilised in the development of influence diagrams as prediction frameworks. The research revealed that the performance and throughput rates of students in the department are improving. This highlights the importance of undertaking a narrow, departmental level analysis; as the findings in this smaller sphere do not match the general theory and assumptions covered in the literature.
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- Date Issued: 2017