Divisional map of Albany
- Thomas, Charles Neumann, 1840-1923
- Authors: Thomas, Charles Neumann, 1840-1923
- Date: 1899
- Subjects: 1 inch = 840 Cape roods 30.5595° S, 22.9375° E , Albany (South Africa History Maps , British settlers of 1820 (South Africa Maps , South Africa History 1836-1909 Maps
- Language: English
- Type: maps , digital maps , cartographic
- Identifier: http://hdl.handle.net/10962/106330 , vital:32641 , Cory Library for Humanities Research, Rhodes University Library, Grahamstown, South Africa , MP249
- Description: Details of Sephton's party, Clarke's party, Morgan's party, Howard's party and Liversage's party. C. Neumann Thomas, compiler ; [Cape Town, Surveyor General's Office].
- Full Text: false
- Date Issued: 1899
- Authors: Thomas, Charles Neumann, 1840-1923
- Date: 1899
- Subjects: 1 inch = 840 Cape roods 30.5595° S, 22.9375° E , Albany (South Africa History Maps , British settlers of 1820 (South Africa Maps , South Africa History 1836-1909 Maps
- Language: English
- Type: maps , digital maps , cartographic
- Identifier: http://hdl.handle.net/10962/106330 , vital:32641 , Cory Library for Humanities Research, Rhodes University Library, Grahamstown, South Africa , MP249
- Description: Details of Sephton's party, Clarke's party, Morgan's party, Howard's party and Liversage's party. C. Neumann Thomas, compiler ; [Cape Town, Surveyor General's Office].
- Full Text: false
- Date Issued: 1899
Ferns on a milkwood branch
- Authors: Skead, C J (Cuthbert John)
- Date: 1960-03
- Subjects: Ferns -- South Africa -- Photographs
- Language: English
- Type: mixed material , photographs , landscape photographs
- Identifier: http://hdl.handle.net/10962/75604 , vital:30440
- Description: Caption: "Ferns on a milkwood branch in Cape Morgan dune forest, near Kei Mouth. March 1960."
- Full Text: false
- Date Issued: 1960-03
- Authors: Skead, C J (Cuthbert John)
- Date: 1960-03
- Subjects: Ferns -- South Africa -- Photographs
- Language: English
- Type: mixed material , photographs , landscape photographs
- Identifier: http://hdl.handle.net/10962/75604 , vital:30440
- Description: Caption: "Ferns on a milkwood branch in Cape Morgan dune forest, near Kei Mouth. March 1960."
- Full Text: false
- Date Issued: 1960-03
Divisional map of Albany
- Thomas, Charles Neumann, 1840-1923
- Authors: Thomas, Charles Neumann, 1840-1923
- Date: 1899
- Subjects: unspecified 30.5595° S, 22.9375° E , Eastern Cape(South Africa) Maps , Albany (South Africa) History Maps , British settlers of 1820 (South Africa) Maps , South Africa History 1806-1909 Maps
- Language: English
- Type: maps , digital maps , cartographic
- Identifier: http://hdl.handle.net/10962/107768 , vital:32891 , Cory Library for Humanities Research, Rhodes University Library, Grahamstown, South Africa , MP671
- Description: Albany sheet no. 6. Details of Sephton's party, Clarke's party, Morgan's party, Howard's party and Liversage's party.
- Full Text: false
- Date Issued: 1899
- Authors: Thomas, Charles Neumann, 1840-1923
- Date: 1899
- Subjects: unspecified 30.5595° S, 22.9375° E , Eastern Cape(South Africa) Maps , Albany (South Africa) History Maps , British settlers of 1820 (South Africa) Maps , South Africa History 1806-1909 Maps
- Language: English
- Type: maps , digital maps , cartographic
- Identifier: http://hdl.handle.net/10962/107768 , vital:32891 , Cory Library for Humanities Research, Rhodes University Library, Grahamstown, South Africa , MP671
- Description: Albany sheet no. 6. Details of Sephton's party, Clarke's party, Morgan's party, Howard's party and Liversage's party.
- Full Text: false
- Date Issued: 1899
Grace “The story of a wise cat and a cruel man.”
- Authors: Phepheng, Maruping
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:6005 , http://hdl.handle.net/10962/d1021213
- Description: Morgan, a widower and police detective, is quickly promoted from constable to captain after a series of successful criminal investigations, creating enemies in the process. One of the convicted and incarcerated is Paper, a gang leader with a violent upbringing. After a lucky release from prison, Paper, now Morgan’s fierce foe, plots to hurt him in the worst way possible – by killing his only son. The story is narrated by a cat named Grace, whose presence and companionship comes from another dimension and helps Morgan to keep sane.
- Full Text:
- Date Issued: 2016
- Authors: Phepheng, Maruping
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:6005 , http://hdl.handle.net/10962/d1021213
- Description: Morgan, a widower and police detective, is quickly promoted from constable to captain after a series of successful criminal investigations, creating enemies in the process. One of the convicted and incarcerated is Paper, a gang leader with a violent upbringing. After a lucky release from prison, Paper, now Morgan’s fierce foe, plots to hurt him in the worst way possible – by killing his only son. The story is narrated by a cat named Grace, whose presence and companionship comes from another dimension and helps Morgan to keep sane.
- Full Text:
- Date Issued: 2016
Devulcanization of model compounds by a variety of diphenyldisulfides
- Authors: Boyce, Annemè
- Date: 2017
- Subjects: Rubber -- Recycling Rubber, Reclaimed , Rubber -- Standards -- South Africa Rubber -- Research Chromatographic analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/14730 , vital:27834
- Description: Improvements to the properties of recycled rubber, by developing a more selective breakdown process, is an important issue and a global challenge. Devulcanization is the most promising way to achieve this. It is a process which aims to totally or partially cleave monosulfidic (C-S-C), disulfidic (C-S-S-C) and polysulfidic (C-Sx-C) crosslinks of vulcanized rubber. In this study, the devulcanization of sulfur-vulcanized natural rubber with a variety of diphenyldisulfides has been studied using 2,3-dimethyl-2-butene and squalene as model compounds, vulcanized by sulfur and 2-bisbenzothiazole-2,2’-disulfide. 2-aminodiphenyldisulfide; 4-amino-diphenyldisulfide; bis(2-benzamido-)diphenyldisulfide and 2,2’-bithiosalicylic acid were used as aromatic disulfides devulcanization agents. Thermal analysis was used to investigate interactions between various combinations of curatives in the vulcanization systems in the absence of model compounds. Thermogravimetric analysis was used to detect mass changes during vulcanization and whether the samples decompose/evaporate so as not to contaminate differential scanning calorimetry instrumentation. Differential scanning calorimetry was used to investigate reactions occurring between curatives. Comparison of reversing and non-reversing signals in modulated experiments are suggestive of reactions between devulcanization agents and sulfur, and accelerators Vulcanization of the model compounds were performed in 10m evacuated sealed glass ampoules placed in an oil bath at 160 °C and agitated for the duration of vulcanization. After 60 min the ampoules were removed and quenched. These were then devulcanized by exposure to a devulcanization agent in a sealed ampoule at 180 for 60 min. Crosslinked 2,3-dimethyl-2-butene species were isolated and analysed by reversed phase high performance liquid chromatography. Particular attention was paid to changes in the number of sulfur atoms in the crosslinks. Results indicate that of the devulcanization agents tested 4-amino-diphenyldisulfide was the most effective. No detrimental effect on devulcanization efficiency was caused by the substitution of a basic amino group with an acidic carboxylic acid group Gel permeation chromatography was performed on devulcanized squalene crosslinks using a tetrahydrofuran eluent. GPC investigations with squalene were less effective than HPLC experiments with 2,3-dimethyl-2-butene at evaluating the relative efficiency of individual devulcanization agents. Results were, however, consistent with 4-amino-diphenyldisulfide again being the most efficient devulcanization agent.
- Full Text:
- Date Issued: 2017
- Authors: Boyce, Annemè
- Date: 2017
- Subjects: Rubber -- Recycling Rubber, Reclaimed , Rubber -- Standards -- South Africa Rubber -- Research Chromatographic analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/14730 , vital:27834
- Description: Improvements to the properties of recycled rubber, by developing a more selective breakdown process, is an important issue and a global challenge. Devulcanization is the most promising way to achieve this. It is a process which aims to totally or partially cleave monosulfidic (C-S-C), disulfidic (C-S-S-C) and polysulfidic (C-Sx-C) crosslinks of vulcanized rubber. In this study, the devulcanization of sulfur-vulcanized natural rubber with a variety of diphenyldisulfides has been studied using 2,3-dimethyl-2-butene and squalene as model compounds, vulcanized by sulfur and 2-bisbenzothiazole-2,2’-disulfide. 2-aminodiphenyldisulfide; 4-amino-diphenyldisulfide; bis(2-benzamido-)diphenyldisulfide and 2,2’-bithiosalicylic acid were used as aromatic disulfides devulcanization agents. Thermal analysis was used to investigate interactions between various combinations of curatives in the vulcanization systems in the absence of model compounds. Thermogravimetric analysis was used to detect mass changes during vulcanization and whether the samples decompose/evaporate so as not to contaminate differential scanning calorimetry instrumentation. Differential scanning calorimetry was used to investigate reactions occurring between curatives. Comparison of reversing and non-reversing signals in modulated experiments are suggestive of reactions between devulcanization agents and sulfur, and accelerators Vulcanization of the model compounds were performed in 10m evacuated sealed glass ampoules placed in an oil bath at 160 °C and agitated for the duration of vulcanization. After 60 min the ampoules were removed and quenched. These were then devulcanized by exposure to a devulcanization agent in a sealed ampoule at 180 for 60 min. Crosslinked 2,3-dimethyl-2-butene species were isolated and analysed by reversed phase high performance liquid chromatography. Particular attention was paid to changes in the number of sulfur atoms in the crosslinks. Results indicate that of the devulcanization agents tested 4-amino-diphenyldisulfide was the most effective. No detrimental effect on devulcanization efficiency was caused by the substitution of a basic amino group with an acidic carboxylic acid group Gel permeation chromatography was performed on devulcanized squalene crosslinks using a tetrahydrofuran eluent. GPC investigations with squalene were less effective than HPLC experiments with 2,3-dimethyl-2-butene at evaluating the relative efficiency of individual devulcanization agents. Results were, however, consistent with 4-amino-diphenyldisulfide again being the most efficient devulcanization agent.
- Full Text:
- Date Issued: 2017
Breast cancer: current developments in molecular approaches to diagnosis and treatment
- de la Mare, Jo-Anne, Contu, Lara, Hunter, Morgan C, Moyo, Buhle, Sterrenberg, Jason N, Dhanani, Karim C H, Mutsvunguma, Lorraine Z, Edkins, Adrienne L
- Authors: de la Mare, Jo-Anne , Contu, Lara , Hunter, Morgan C , Moyo, Buhle , Sterrenberg, Jason N , Dhanani, Karim C H , Mutsvunguma, Lorraine Z , Edkins, Adrienne L
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/164819 , vital:41175 , DOI: 10.2174/15748928113086660046
- Description: Due to the high heterogeneity of breast cancers, numerous recent patents describe improved methods of detection and classification which promise better patient prognosis and treatment. In particular, there has been a shift towards more effective genetic screening to identify specific mutations associated with breast tumours, which may lead to “personalised medicine” with improved outcomes. Two challenging areas of breast cancer research involve the development of treatments for the highly aggressive triple negative breast cancer subtype as well as the chemotherapy-resistant cancer stem cell subpopulation. In addition, despite numerous recent advances in breast cancer treatment in woman, male breast cancer remains poorly understood and there are limited therapies available which are developed specifically for men. This review serves to report on important developments in the treatment of breast malignancies patented in the past two years as well as to highlight the current gaps in the field of breast cancer therapeutics and areas which require further study.
- Full Text:
- Date Issued: 2014
- Authors: de la Mare, Jo-Anne , Contu, Lara , Hunter, Morgan C , Moyo, Buhle , Sterrenberg, Jason N , Dhanani, Karim C H , Mutsvunguma, Lorraine Z , Edkins, Adrienne L
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/164819 , vital:41175 , DOI: 10.2174/15748928113086660046
- Description: Due to the high heterogeneity of breast cancers, numerous recent patents describe improved methods of detection and classification which promise better patient prognosis and treatment. In particular, there has been a shift towards more effective genetic screening to identify specific mutations associated with breast tumours, which may lead to “personalised medicine” with improved outcomes. Two challenging areas of breast cancer research involve the development of treatments for the highly aggressive triple negative breast cancer subtype as well as the chemotherapy-resistant cancer stem cell subpopulation. In addition, despite numerous recent advances in breast cancer treatment in woman, male breast cancer remains poorly understood and there are limited therapies available which are developed specifically for men. This review serves to report on important developments in the treatment of breast malignancies patented in the past two years as well as to highlight the current gaps in the field of breast cancer therapeutics and areas which require further study.
- Full Text:
- Date Issued: 2014
Studies towards the development of novel multidentate ligands
- Authors: Magqi, Nceba
- Date: 2007
- Subjects: Density functionals , Ligands , Ligands -- Design , Ligands -- Analysis , Camphor
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4358 , http://hdl.handle.net/10962/d1005023 , Density functionals , Ligands , Ligands -- Design , Ligands -- Analysis , Camphor
- Description: In this study, attention has been given to the design and synthesis of novel multidentate ligands for use in the construction of ruthenium-based metathesis catalysts, and their chelating potential has been explored by computer modelling at the Density Functional Theory (DFT) level. Both Kemp’s triacid (1,3,5-trimethyl-1,3,5-cyclohexanetricarboxylic acid) and D-(+)-camphor have been investigated as molecular scaffolds for the development of such ligands. However selective elaboration of the functional groups in Kemp’s triacid proved difficult to achieve, and the research has focused on the development of camphor derivatives. The synthesis of the camphor-based ligands has involved C-8 functionalisation and ring-opening of the bicyclic system to afford tridentate products. The formation of 9-iodocamphorquinone bis(ethylene ketal) together with the desired product, the 8-iodo isomer, has been confirmed by single crystal X-ray analysis of both compounds. Formation of the 9-iodo analogue has provided new insights into the intramolecular rearrangement of camphor skeleton, and the mechanistic implications have been assessed by coset analysis. Attempts to effect nucleophilic displacement of the 8-halogeno groups by nucleophilic donor moieties proved unexpectedly difficult and, coupled with the susceptibility of the carbonyl groups to nucleophilic attack, has led to the formation of novel tricyclic products, viz., 1,6-dimethyl-3-(2-pyridylamino)-4-oxatricyclo[4.3.0.0[superscript 3,7]]-2-nonanone and 6,7-dimethyl-3-(2-pyridylamino)-4-oxatricyclo -[4.3.0.0[superscript 3,7]]-2-nonanone. However the diphenylphosphine group was successfully introduced at C-8 and oxidative ring-opening of the camphor skeleton has afforded the tridentate ligands, 2-(diphenylphosphinoylmethyl)-1,2-dimethyl-1,3-cyclopentanedicarboxylic acid and 2-(diphenylphosphinoylmethyl)-1,3-bis(hydroxymethyl)1,2-dimethylcyclopentane. One- and two-dimensional NMR and, where appropriate, high-resolution MS methods have been used to characterise the products. Three [superscript 13]C NMR chemical shift prediction programmes, viz., ChemWindow and the MODGRAPH neural network and HOSE (Hierachially Ordered Spherical description of Environment), have been applied to representative compounds to assess their efficacy. While the predicted shifts correlated reasonably well with the experimental data, they proved to be insufficiently accurate to differentiate the isomeric systems examined.
- Full Text:
- Date Issued: 2007
- Authors: Magqi, Nceba
- Date: 2007
- Subjects: Density functionals , Ligands , Ligands -- Design , Ligands -- Analysis , Camphor
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4358 , http://hdl.handle.net/10962/d1005023 , Density functionals , Ligands , Ligands -- Design , Ligands -- Analysis , Camphor
- Description: In this study, attention has been given to the design and synthesis of novel multidentate ligands for use in the construction of ruthenium-based metathesis catalysts, and their chelating potential has been explored by computer modelling at the Density Functional Theory (DFT) level. Both Kemp’s triacid (1,3,5-trimethyl-1,3,5-cyclohexanetricarboxylic acid) and D-(+)-camphor have been investigated as molecular scaffolds for the development of such ligands. However selective elaboration of the functional groups in Kemp’s triacid proved difficult to achieve, and the research has focused on the development of camphor derivatives. The synthesis of the camphor-based ligands has involved C-8 functionalisation and ring-opening of the bicyclic system to afford tridentate products. The formation of 9-iodocamphorquinone bis(ethylene ketal) together with the desired product, the 8-iodo isomer, has been confirmed by single crystal X-ray analysis of both compounds. Formation of the 9-iodo analogue has provided new insights into the intramolecular rearrangement of camphor skeleton, and the mechanistic implications have been assessed by coset analysis. Attempts to effect nucleophilic displacement of the 8-halogeno groups by nucleophilic donor moieties proved unexpectedly difficult and, coupled with the susceptibility of the carbonyl groups to nucleophilic attack, has led to the formation of novel tricyclic products, viz., 1,6-dimethyl-3-(2-pyridylamino)-4-oxatricyclo[4.3.0.0[superscript 3,7]]-2-nonanone and 6,7-dimethyl-3-(2-pyridylamino)-4-oxatricyclo -[4.3.0.0[superscript 3,7]]-2-nonanone. However the diphenylphosphine group was successfully introduced at C-8 and oxidative ring-opening of the camphor skeleton has afforded the tridentate ligands, 2-(diphenylphosphinoylmethyl)-1,2-dimethyl-1,3-cyclopentanedicarboxylic acid and 2-(diphenylphosphinoylmethyl)-1,3-bis(hydroxymethyl)1,2-dimethylcyclopentane. One- and two-dimensional NMR and, where appropriate, high-resolution MS methods have been used to characterise the products. Three [superscript 13]C NMR chemical shift prediction programmes, viz., ChemWindow and the MODGRAPH neural network and HOSE (Hierachially Ordered Spherical description of Environment), have been applied to representative compounds to assess their efficacy. While the predicted shifts correlated reasonably well with the experimental data, they proved to be insufficiently accurate to differentiate the isomeric systems examined.
- Full Text:
- Date Issued: 2007
Physiological and psychophysical factors in the rating of perceived exertion during uphill overground and treadmill running
- Authors: Olivier, Stephen Chris
- Date: 1989
- Subjects: Physical fitness -- Measurement , Physical fitness -- Physiological aspects , Physical fitness -- Psychological aspects , Running -- Testing
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:5161 , http://hdl.handle.net/10962/d1015769
- Description: The purpose of this study was to examine possible differences between the field and laboratory ratings of perceived exertion (RPE) when the performance and physiological measures for the two conditions were equated. Furthermore, the interactive effects of local, central and overall RPE were examined. Finally, the question of the potential effects of attitudes on RPE was addressed. Eleven well-conditioned adult male marathon runners voluntarily participated in the study. After a period of treadmill habituation, biographical and anthropometric data were collected. This was followed by a VO₂ max test and a speed-matching session at 70% of VO₂ max to determine overground running speed at 3.8% and 7. 5% grade. Subjects then completed an attitudinal questionnaire and ran 4km overground. Finally, the above test was repeated on the treadmill, with the gradient and running speed of the overground condition being replicated. Physiological measures and differentiated RPE were obtained during the final two sessions. There were no physical environmental, task characteristic or performance differences between the overground and treadmill conditions. No heart rate or VO₂ differences were observed between the two conditions, but VE was significantly elevated in the laboratory. Local and overall RPE were significantly higher in the laboratory than in the field, but there was no difference for central RPE. Attitudes were more favourable towards the field than towards the laboratory work task. The results suggest that neither heart rate nor VO₂ are major factors directly influencing the perception of exertion. VE however appears to be a potent central signal mediating RPE. The results also indicate that local factors play a more important role in the perception of exertion than was previously thought. Attitudes towards a work task could possibly mediate the self-reports of exertion. The findings of this study also suggest that RPE are influenced by cognition to a large degree. Finally, environmental cues, or the ambience of a particular working environment, can exert a substantial influence on RPE. Direct perceptual translations from laboratory to field situations may therefore be invalid.
- Full Text:
- Date Issued: 1989
- Authors: Olivier, Stephen Chris
- Date: 1989
- Subjects: Physical fitness -- Measurement , Physical fitness -- Physiological aspects , Physical fitness -- Psychological aspects , Running -- Testing
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:5161 , http://hdl.handle.net/10962/d1015769
- Description: The purpose of this study was to examine possible differences between the field and laboratory ratings of perceived exertion (RPE) when the performance and physiological measures for the two conditions were equated. Furthermore, the interactive effects of local, central and overall RPE were examined. Finally, the question of the potential effects of attitudes on RPE was addressed. Eleven well-conditioned adult male marathon runners voluntarily participated in the study. After a period of treadmill habituation, biographical and anthropometric data were collected. This was followed by a VO₂ max test and a speed-matching session at 70% of VO₂ max to determine overground running speed at 3.8% and 7. 5% grade. Subjects then completed an attitudinal questionnaire and ran 4km overground. Finally, the above test was repeated on the treadmill, with the gradient and running speed of the overground condition being replicated. Physiological measures and differentiated RPE were obtained during the final two sessions. There were no physical environmental, task characteristic or performance differences between the overground and treadmill conditions. No heart rate or VO₂ differences were observed between the two conditions, but VE was significantly elevated in the laboratory. Local and overall RPE were significantly higher in the laboratory than in the field, but there was no difference for central RPE. Attitudes were more favourable towards the field than towards the laboratory work task. The results suggest that neither heart rate nor VO₂ are major factors directly influencing the perception of exertion. VE however appears to be a potent central signal mediating RPE. The results also indicate that local factors play a more important role in the perception of exertion than was previously thought. Attitudes towards a work task could possibly mediate the self-reports of exertion. The findings of this study also suggest that RPE are influenced by cognition to a large degree. Finally, environmental cues, or the ambience of a particular working environment, can exert a substantial influence on RPE. Direct perceptual translations from laboratory to field situations may therefore be invalid.
- Full Text:
- Date Issued: 1989
Evaluating long term effects of fire frequency on soil seed bank composition and species diversity in a semi-arid , South African savanna
- Mabuza, Thembisile Veronicah
- Authors: Mabuza, Thembisile Veronicah
- Date: 2011
- Subjects: Pastures -- South Africa -- Eastern Cape , Fire management -- South Africa -- Eastern Cape , Forage plants -- Evaluation , Ruminants -- Feeding and feeds , Ruminants -- Nutrition , Soil seed banks
- Language: English
- Type: Thesis , Masters , MSc Agric (Pasture Science)
- Identifier: vital:11579 , http://hdl.handle.net/10353/346 , Pastures -- South Africa -- Eastern Cape , Fire management -- South Africa -- Eastern Cape , Forage plants -- Evaluation , Ruminants -- Feeding and feeds , Ruminants -- Nutrition , Soil seed banks
- Description: Fire is generally used as a management tool for different vegetation types such as savannas and grasslands in southern Africa. In the False Thornveld of the Eastern Cape, fire is commonly used to control bush encroachment and to increase grass production, as grasses are important source of forage for domestic livestock. At the University of Fort Hare farm in the Eastern Cape, a trial was set up in 1980 to investigate the effect of burning frequency on vegetation. There are six treatments replicated twice in a completely randomized design on a 100 m x 50 m plots. The treatments comprise no burn, annual, biennial, triennial, quadrennial and sexennial burns. From this trial a study was conducted to investigate long term effect of burning frequency on species and soil seed bank diversity. Two 100 m line transects located 25 m apart were laid within each plot, and the herbaceous and woody species were identified and recorded along the line transects. Relative abundances (%) for each species were calculated for each treatment. Soil samples were collected at an interval of 13.3 m along the line transects. The samples were placed in paper bags and kept for use in a germination experiment. The seedling emergence germination method was used in the glasshouse to determine emerging seedlings, pots were filled with Hygromix growth medium and the soils from the fire trials 12 X 6 = 72 were spread on top. Soil from the control plots were also pre-treated with heat, smoke and the combination of heat and smoke. The experiment started in January 2010 and was terminated in April 2010. The Shannon-Weaver Diversity Index was used to determine species diversity for standing vegetation and germinated seedlings. Data were tested for normality and species abundances were transformed. Analysis of Variance (ANOVA) was applied to test treatment effects on geminated seedlings, species abundance and diversity at α = 0.05 significance level. Significant differences between treatment means were determined by post v hoc tests using Fischer‟s Least Significant Difference test at α = 0.05. The Pearson Moment Correlation test was used to test the relationship between vegetation and soil seed banks. Treatments had significant effects on herbaceous, woody species abundance and diversity (P < 0.05), but there was no significant treatment effect on soil seed bank diversity and on pre-germination treatments (P > 0.05). The annual, biennial and triennial burns were dominated by Themeda triandra while the quadrennial, sexennial and the control treatments were dominated by Sporobolus fimbriatus and Melica decumbens. A. karroo dominated the woody component across all treatments, but it did not change in abundance. S. fimbriatus was the most abundant in the soil seed bank across all the treatments and also in all pre-germination treatments. Species diversity was high in standing vegetation in the quadrennial, sexennial and the control treatments. There was no significant correlation between the standing vegetation and soil seed bank diversities (P > 0.05). Based on these findings it is apparent that fire can change vegetation in an area to be dominated by fire tolerant or fire intolerant species. Fire frequency, heat and smoke affects soil seed banks to a lesser extent in the False Thornveld. For the management of the False Thornveld of the Eastern Cape, less frequent burning is recommended as it increases aboveground species diversity.
- Full Text:
- Date Issued: 2011
- Authors: Mabuza, Thembisile Veronicah
- Date: 2011
- Subjects: Pastures -- South Africa -- Eastern Cape , Fire management -- South Africa -- Eastern Cape , Forage plants -- Evaluation , Ruminants -- Feeding and feeds , Ruminants -- Nutrition , Soil seed banks
- Language: English
- Type: Thesis , Masters , MSc Agric (Pasture Science)
- Identifier: vital:11579 , http://hdl.handle.net/10353/346 , Pastures -- South Africa -- Eastern Cape , Fire management -- South Africa -- Eastern Cape , Forage plants -- Evaluation , Ruminants -- Feeding and feeds , Ruminants -- Nutrition , Soil seed banks
- Description: Fire is generally used as a management tool for different vegetation types such as savannas and grasslands in southern Africa. In the False Thornveld of the Eastern Cape, fire is commonly used to control bush encroachment and to increase grass production, as grasses are important source of forage for domestic livestock. At the University of Fort Hare farm in the Eastern Cape, a trial was set up in 1980 to investigate the effect of burning frequency on vegetation. There are six treatments replicated twice in a completely randomized design on a 100 m x 50 m plots. The treatments comprise no burn, annual, biennial, triennial, quadrennial and sexennial burns. From this trial a study was conducted to investigate long term effect of burning frequency on species and soil seed bank diversity. Two 100 m line transects located 25 m apart were laid within each plot, and the herbaceous and woody species were identified and recorded along the line transects. Relative abundances (%) for each species were calculated for each treatment. Soil samples were collected at an interval of 13.3 m along the line transects. The samples were placed in paper bags and kept for use in a germination experiment. The seedling emergence germination method was used in the glasshouse to determine emerging seedlings, pots were filled with Hygromix growth medium and the soils from the fire trials 12 X 6 = 72 were spread on top. Soil from the control plots were also pre-treated with heat, smoke and the combination of heat and smoke. The experiment started in January 2010 and was terminated in April 2010. The Shannon-Weaver Diversity Index was used to determine species diversity for standing vegetation and germinated seedlings. Data were tested for normality and species abundances were transformed. Analysis of Variance (ANOVA) was applied to test treatment effects on geminated seedlings, species abundance and diversity at α = 0.05 significance level. Significant differences between treatment means were determined by post v hoc tests using Fischer‟s Least Significant Difference test at α = 0.05. The Pearson Moment Correlation test was used to test the relationship between vegetation and soil seed banks. Treatments had significant effects on herbaceous, woody species abundance and diversity (P < 0.05), but there was no significant treatment effect on soil seed bank diversity and on pre-germination treatments (P > 0.05). The annual, biennial and triennial burns were dominated by Themeda triandra while the quadrennial, sexennial and the control treatments were dominated by Sporobolus fimbriatus and Melica decumbens. A. karroo dominated the woody component across all treatments, but it did not change in abundance. S. fimbriatus was the most abundant in the soil seed bank across all the treatments and also in all pre-germination treatments. Species diversity was high in standing vegetation in the quadrennial, sexennial and the control treatments. There was no significant correlation between the standing vegetation and soil seed bank diversities (P > 0.05). Based on these findings it is apparent that fire can change vegetation in an area to be dominated by fire tolerant or fire intolerant species. Fire frequency, heat and smoke affects soil seed banks to a lesser extent in the False Thornveld. For the management of the False Thornveld of the Eastern Cape, less frequent burning is recommended as it increases aboveground species diversity.
- Full Text:
- Date Issued: 2011
Resource utilization and reproduction of the hermit crab Clibanarius virescens (Crustacea: Decapoda : Anomura)
- Authors: Wait, Michelle
- Subjects: Hermit crabs -- South Africa , Hermit crabs -- South Africa -- Reproduction
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10599 , http://hdl.handle.net/10948/1553 , Hermit crabs -- South Africa , Hermit crabs -- South Africa -- Reproduction
- Description: Clibanarius virescens (Krauss) is a common and abundant hermit crab along the East coast of South Africa. Despite this, its biology is poorly known, both in South Africa and throughout the rest of its range in the West Indo-Pacific region. This study focuses on the descriptive analysis of the shell resource used by C. virescens and of the effects of this resource on crab populations. The underlying hypothesis of the study is that biogeographically imposed gradients in the morphology of intertidal gastropod shells used by hermit crabs affect hermit crab population parameters. The gradient of potential change in the shell resource was captured by sampling at 12 localities, encompassing the range of C. virescens in South Africa. Seasonal changes in shell use, population structure and reproduction at a single locality (Cape Recife) were recorded over a period of 13 months. The breeding season of C. virescens at the southern extreme of its range extended from December to June. The population structure shows some seasonal change, but no clear trends emerge. The shell resource changed substantially in nature over the region studied. Based on shell use, localities clustered into separate southern and northern groups with a break occurring between Dwesa and Coffee Bay. Southern localities were characterised by use of Burnupena cincta, B. lagenaria and B. pubescens. Northern localities were characterised by the use of Morula granulata, M. nodosa and Peristernia forskalii. Intertidal shells used by C. virescens show fewer adaptations to predation in southern localities than shells from northern localities. Southern shells ii are relatively large, light and have wider apertures than those from northern localities which are generally smaller, heavier and have decreased aperture widths. Shell parameters affect population size-distributions as southern crabs were larger and heavier than northern crabs. C. virescens show sexual size dimorphism in which male crabs uniformly dominate the larger size classes at all localities. Differences in the sex ratio between males and females show more variable patterns. Most southern localities show no difference in the number of male and female crabs, but most northern localities show a skewed sex ratio in favour of females. Shell use and population size distributions of females affect reproductive output. Southern females produced significantly larger clutches than northern females. Reproductive output was related to crab mass and shell volume. Shell use patterns conform to the biogeographical regions in the range of the study and have a clear effect on both the population size distributions and reproductive output of Clibanarius virescens.
- Full Text:
- Authors: Wait, Michelle
- Subjects: Hermit crabs -- South Africa , Hermit crabs -- South Africa -- Reproduction
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10599 , http://hdl.handle.net/10948/1553 , Hermit crabs -- South Africa , Hermit crabs -- South Africa -- Reproduction
- Description: Clibanarius virescens (Krauss) is a common and abundant hermit crab along the East coast of South Africa. Despite this, its biology is poorly known, both in South Africa and throughout the rest of its range in the West Indo-Pacific region. This study focuses on the descriptive analysis of the shell resource used by C. virescens and of the effects of this resource on crab populations. The underlying hypothesis of the study is that biogeographically imposed gradients in the morphology of intertidal gastropod shells used by hermit crabs affect hermit crab population parameters. The gradient of potential change in the shell resource was captured by sampling at 12 localities, encompassing the range of C. virescens in South Africa. Seasonal changes in shell use, population structure and reproduction at a single locality (Cape Recife) were recorded over a period of 13 months. The breeding season of C. virescens at the southern extreme of its range extended from December to June. The population structure shows some seasonal change, but no clear trends emerge. The shell resource changed substantially in nature over the region studied. Based on shell use, localities clustered into separate southern and northern groups with a break occurring between Dwesa and Coffee Bay. Southern localities were characterised by use of Burnupena cincta, B. lagenaria and B. pubescens. Northern localities were characterised by the use of Morula granulata, M. nodosa and Peristernia forskalii. Intertidal shells used by C. virescens show fewer adaptations to predation in southern localities than shells from northern localities. Southern shells ii are relatively large, light and have wider apertures than those from northern localities which are generally smaller, heavier and have decreased aperture widths. Shell parameters affect population size-distributions as southern crabs were larger and heavier than northern crabs. C. virescens show sexual size dimorphism in which male crabs uniformly dominate the larger size classes at all localities. Differences in the sex ratio between males and females show more variable patterns. Most southern localities show no difference in the number of male and female crabs, but most northern localities show a skewed sex ratio in favour of females. Shell use and population size distributions of females affect reproductive output. Southern females produced significantly larger clutches than northern females. Reproductive output was related to crab mass and shell volume. Shell use patterns conform to the biogeographical regions in the range of the study and have a clear effect on both the population size distributions and reproductive output of Clibanarius virescens.
- Full Text:
Extraction of diallyl sulfides and other similar compounds from tulbaghia violacea, a South African plant, for potential use as devulcanizing agents
- Authors: Sonti, Thembela Celia
- Date: 2018
- Subjects: Violaceae -- South Africa , Plant extracts Plant products Traditional medicine
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/23338 , vital:30533
- Description: Tulbaghia violacea is a plant that is commonly used for traditional medicine in the Eastern Cape and Kwa-Zulu Natal Provinces of South Africa for treatment of ailments, such as fever, colds, asthma, tuberculosis, stomach-ache and cancer of the oesophagus. This plant has been found to be rich in sulfur-containing compounds that may display good potential as devulcanizing agents. Commonly used chemical devulcanizing agents are disulfides, such as diphenyl disulfide. These have been found to be relatively expensive compared to other methods of devulcanization. This study aimed to show that the sulfur- containing compounds extracted from the readily available Tulbaghia violacea plant can be used as devulcanizing agents. The presence of sulfur-containing compounds in the plant was positively identified by qualitative phytochemical analysis. Extraction of sulfur-containing compounds from the bulk plant material was successfully performed using the Soxhlet extraction method with a 2% 2-propanol in n-hexane solvent mixture. There was a positive identification of sulfur compounds in the crude extracts of the bulbs, roots and leaves. Diallyl disulfides (DADS) extracted from the plant were successfully quantified using normal phase high-performance liquid chromatography (HPLC). The results showed that in a bulb crude extract of 9.89 mg/mL concentration, there was 7.74X10-2 mg/mL concentration of DADS. In the roots crude extract of 10.26 mg/mL concentration, there was 2.93X10-2 mg/mL concentration of DADS; and in leaves crude extract of 10.47 mg/mL concentration, there was 3.69X10-2 mg/mL concentration of DADS. The crude extracts were evaluated for their effectiveness as devulcanizing agents by reacting them with vulcanized 2,3-dimethyl-2-butene (TME), which was used as a model compound. A reverse phase HPLC method was used to identify crosslink species formed during vulcanization, and to monitor the broken crosslinks during devulcanization. It was observed that the di- and polysulfidic crosslinked vulcanized model compound species were not present in the devulcanized product. Furthermore monosulfidic crosslink species, a common end species of devulcanization, were observed to increase in concentration from the HPLC chromatograms. It was observed that the extracts from the bulbs and leaves of Tulbaghia violacea were more effective than the extract from the roots when applied to the vulcanized model compound. This study demonstrates that Tulbaghia violacea can be used as alternatives to petroleum-derived chemicals as devulcanizing agents.
- Full Text:
- Date Issued: 2018
- Authors: Sonti, Thembela Celia
- Date: 2018
- Subjects: Violaceae -- South Africa , Plant extracts Plant products Traditional medicine
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/23338 , vital:30533
- Description: Tulbaghia violacea is a plant that is commonly used for traditional medicine in the Eastern Cape and Kwa-Zulu Natal Provinces of South Africa for treatment of ailments, such as fever, colds, asthma, tuberculosis, stomach-ache and cancer of the oesophagus. This plant has been found to be rich in sulfur-containing compounds that may display good potential as devulcanizing agents. Commonly used chemical devulcanizing agents are disulfides, such as diphenyl disulfide. These have been found to be relatively expensive compared to other methods of devulcanization. This study aimed to show that the sulfur- containing compounds extracted from the readily available Tulbaghia violacea plant can be used as devulcanizing agents. The presence of sulfur-containing compounds in the plant was positively identified by qualitative phytochemical analysis. Extraction of sulfur-containing compounds from the bulk plant material was successfully performed using the Soxhlet extraction method with a 2% 2-propanol in n-hexane solvent mixture. There was a positive identification of sulfur compounds in the crude extracts of the bulbs, roots and leaves. Diallyl disulfides (DADS) extracted from the plant were successfully quantified using normal phase high-performance liquid chromatography (HPLC). The results showed that in a bulb crude extract of 9.89 mg/mL concentration, there was 7.74X10-2 mg/mL concentration of DADS. In the roots crude extract of 10.26 mg/mL concentration, there was 2.93X10-2 mg/mL concentration of DADS; and in leaves crude extract of 10.47 mg/mL concentration, there was 3.69X10-2 mg/mL concentration of DADS. The crude extracts were evaluated for their effectiveness as devulcanizing agents by reacting them with vulcanized 2,3-dimethyl-2-butene (TME), which was used as a model compound. A reverse phase HPLC method was used to identify crosslink species formed during vulcanization, and to monitor the broken crosslinks during devulcanization. It was observed that the di- and polysulfidic crosslinked vulcanized model compound species were not present in the devulcanized product. Furthermore monosulfidic crosslink species, a common end species of devulcanization, were observed to increase in concentration from the HPLC chromatograms. It was observed that the extracts from the bulbs and leaves of Tulbaghia violacea were more effective than the extract from the roots when applied to the vulcanized model compound. This study demonstrates that Tulbaghia violacea can be used as alternatives to petroleum-derived chemicals as devulcanizing agents.
- Full Text:
- Date Issued: 2018
Dynamics of charge movement in ∞-Al2O3:C,Mg using thermoluminescence phototransferred and optically stimulated luminescence
- Authors: Lontsi Sob, Aaron Joel
- Date: 2022-04-08
- Subjects: Thermoluminescence , Optically stimulated luminescence , Phototransfer , Deep traps , Phototransferred thermoluminescence (PTTL)
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/294607 , vital:57237 , DOI 10.21504/10962/294607
- Description: The dosimetric features of ∞-Al2O3:C,Mg have been investigated for unannealed and annealed samples. The unannealed sample is referred to as sample A whereas the samples annealed at 700, 900 and 1200°C for 15 minutes each are referred to as samples B, C and D respectively. A glow curve of unannealed ∞-Al2O3:C,Mg measured at 1°C/s after irradiation to 2.0 Gy consists of peaks at 43, 73, 164, 195, 246, 284, 336 and 374°C respectively. For sample B (annealed at 700°C), a glow curve measured at 1°C/s after irradiation to 3.0 Gy has peaks at 46, 76, 100, 170, 199, 290, 330 and 375°C whereas the glow curve of sample C (annealed at 900°C) recorded under the same conditions consists of peaks at 49, 80, 100, 174, 206, 235, 290, 335 and 375°C respectively. Sample D (annealed at 1200°C) is the most sensitive of the four samples. A glow curve of sample D measured at 1°C/s after irradiation to 0.2 Gy has peaks at 52, 82, 102, 174, 234, 288 and 384°C respectively. The peaks are labelled I-VIII in order of appearance. The 100°C peak, labelled IIa, is induced by annealing at or above 700°C. The dose response of these peaks was studied for doses within 0.1-8.2 Gy. The reported peaks follow first-order kinetics irrespective of annealing temperature. Peaks I-III of each sample are reproduced under phototransfer for preheating up to 400°C. For the unannealed sample, the reproduced peaks are labelled A1-A3 whereas for the annealed samples, they are labelled B1-B3, C1-C3 and D1-D3 respectively. The annealing-induced peak at 100°C is reproduced as B2a, C2a and D2a for samples B, C and D respectively. A PTTL peak labelled C2b or D2b is also observed near 140°C in samples C and D. In addition to these PTTL peaks, a PTTL peak corresponding to peak IV is also found for sample D and for the unannealed sample. As the corresponding conventional peaks, the PTTL peaks of each sample follow first-order kinetics. Peak I and its corresponding PTTL peak for each sample are unstable and fade to a minimal level after 300 s of storage time. On the other hand, peak II of each sample and its corresponding PTTL peak could still be observed with delay up to 5000 s. Peak III of the unannealed sample remains stable with storage time up to 48 hours. Irrespective of annealing, the trap corresponding to peak III is the most sensitive to optical stimulation. Time-dependent profiles of PTTL from unannealed and annealed ∞-Al2O3:C,Mg were also studied. The mathematical analysis of the PTTL time-response profiles is based on experimental results. The role of various electron traps in PTTL was determined by using pulse annealing and by monitoring the dependence of peak intensity on duration of illumination for peaks not removed by preheating. The presence and role of deep traps were further demonstrated with thermally assisted optically stimulated luminescence. For the unannealed sample, the activation energy for thermal assistance is 0.033 ± 0.001 eV and the activation energy for thermal i quenching is 1.043 ± 0.001 eV. For sample C, the activation energy for thermal assistance is 0.044 ± 0.003 eV whereas that for thermal quenching is 1.110 ± 0.006 eV. The values for the activation energy for thermal assistance are lower than those reported in literature. Only the values for the activation energy for thermal quenching are somewhat comparable to values reported elsewhere. , Thesis (PhD) -- Faculty of Science, Physics and Electronics, 2022
- Full Text:
- Date Issued: 2022-04-08
- Authors: Lontsi Sob, Aaron Joel
- Date: 2022-04-08
- Subjects: Thermoluminescence , Optically stimulated luminescence , Phototransfer , Deep traps , Phototransferred thermoluminescence (PTTL)
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/294607 , vital:57237 , DOI 10.21504/10962/294607
- Description: The dosimetric features of ∞-Al2O3:C,Mg have been investigated for unannealed and annealed samples. The unannealed sample is referred to as sample A whereas the samples annealed at 700, 900 and 1200°C for 15 minutes each are referred to as samples B, C and D respectively. A glow curve of unannealed ∞-Al2O3:C,Mg measured at 1°C/s after irradiation to 2.0 Gy consists of peaks at 43, 73, 164, 195, 246, 284, 336 and 374°C respectively. For sample B (annealed at 700°C), a glow curve measured at 1°C/s after irradiation to 3.0 Gy has peaks at 46, 76, 100, 170, 199, 290, 330 and 375°C whereas the glow curve of sample C (annealed at 900°C) recorded under the same conditions consists of peaks at 49, 80, 100, 174, 206, 235, 290, 335 and 375°C respectively. Sample D (annealed at 1200°C) is the most sensitive of the four samples. A glow curve of sample D measured at 1°C/s after irradiation to 0.2 Gy has peaks at 52, 82, 102, 174, 234, 288 and 384°C respectively. The peaks are labelled I-VIII in order of appearance. The 100°C peak, labelled IIa, is induced by annealing at or above 700°C. The dose response of these peaks was studied for doses within 0.1-8.2 Gy. The reported peaks follow first-order kinetics irrespective of annealing temperature. Peaks I-III of each sample are reproduced under phototransfer for preheating up to 400°C. For the unannealed sample, the reproduced peaks are labelled A1-A3 whereas for the annealed samples, they are labelled B1-B3, C1-C3 and D1-D3 respectively. The annealing-induced peak at 100°C is reproduced as B2a, C2a and D2a for samples B, C and D respectively. A PTTL peak labelled C2b or D2b is also observed near 140°C in samples C and D. In addition to these PTTL peaks, a PTTL peak corresponding to peak IV is also found for sample D and for the unannealed sample. As the corresponding conventional peaks, the PTTL peaks of each sample follow first-order kinetics. Peak I and its corresponding PTTL peak for each sample are unstable and fade to a minimal level after 300 s of storage time. On the other hand, peak II of each sample and its corresponding PTTL peak could still be observed with delay up to 5000 s. Peak III of the unannealed sample remains stable with storage time up to 48 hours. Irrespective of annealing, the trap corresponding to peak III is the most sensitive to optical stimulation. Time-dependent profiles of PTTL from unannealed and annealed ∞-Al2O3:C,Mg were also studied. The mathematical analysis of the PTTL time-response profiles is based on experimental results. The role of various electron traps in PTTL was determined by using pulse annealing and by monitoring the dependence of peak intensity on duration of illumination for peaks not removed by preheating. The presence and role of deep traps were further demonstrated with thermally assisted optically stimulated luminescence. For the unannealed sample, the activation energy for thermal assistance is 0.033 ± 0.001 eV and the activation energy for thermal i quenching is 1.043 ± 0.001 eV. For sample C, the activation energy for thermal assistance is 0.044 ± 0.003 eV whereas that for thermal quenching is 1.110 ± 0.006 eV. The values for the activation energy for thermal assistance are lower than those reported in literature. Only the values for the activation energy for thermal quenching are somewhat comparable to values reported elsewhere. , Thesis (PhD) -- Faculty of Science, Physics and Electronics, 2022
- Full Text:
- Date Issued: 2022-04-08
Assessing the impact of climate change on mangrove crabs: the role of ontogenetic macrophysiology and settlement in the persistence of central and marginal populations
- Authors: Mostert, Bruce Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/826 , vital:19994
- Description: After a brief respite in the mid to late 20th century, macro physiology has come to the fore in elucidating large scale ecological patterns and processes as physiological assumptions often form the backbone of many predictive theories associated with species distributions. Critically, macro physiological patterns are valuable in explaining physiological variation across multiple scales and provide insights into the effects of climate change on populations spanning a wide range of latitudes. This can assist in predicting possible distribution expansions, contractions or shifts in light of current climate change scenarios. From this perspective, investigating intra- and inter-specific physiological responses to environmental stress may contribute to better understanding and predicting the effects of climate change on geographical ranges. Further, investigating the physiological effects to environmental stresses across ontogenetic stages allows for the identification of weak links within the lifecycle of a species. Additionally, determining settlement characteristics along a latitudinal cline provides integrated indications of the sustainability of populations, highlighting vulnerable regions in terms of repopulation of viable habitats. In this context, the present study aimed at establishing how temperature, in a physiological context, may affect reproductive biology of two species of mangrove crab, Perisesarma guttatum and Uca urvillei at the centre (Kenya) and edge (South Africa) of their distributional range along the east coast of Africa and highlight possible consequences for range distributions. A third species, Neosarmatium africanum, only in South Africa, was included to provide additional interspecies comparisons. Furthermore, settlement characteristics of brachyuran populations at the centre and edge of their distributional range were considered in order to determine how settlement may contribute to population persistence. Physiological investigations at the centre and edge of distributional range and across ontogenetic stages (larvae, stage 2 and 4 embryos, non-gravid and gravid females) under the concept of oxygen and capacity limitation of thermal tolerance (OCLTT), revealed that, for both species, populations at the centre of their distribution (Kenya) were generally more robust to increasing temperatures and generally displayed greater physiological stability with increasing temperatures compared to their conspecifics in South Africa. Variability in physiological robustness between regions, did however, differ among ontogenetic stages and species but, overall, were evident throughout. Within and between regions, adaptation to oxygen extraction in both milieus (air or water) was displayed for present temperature conditions but aerial respiration largely alleviated increased thermal stress due to overcoming the limitations of reduced oxygen availability and diffusiveness in water for all bimodal ontogenetic stages. Brooding eggs proved to be a physiologically critical process with either heighted oxygen consumption for gravid females or collapse of physiological processes demonstrated by supressed oxygen consumption. The physiological cost of brooding eggs, referred to as maternal costs, was reflected in in both Perisesarma guttatum and Uca urvillei where, in most cases, maternal costs were negative. Again, aerial respiration was able to alleviated increased thermal stress, as shown by positive maternal costs indicating sustained maternal care, but this mechanism was species and regionally specific. Settlement patterns differed between the edge and centre of distribution of the species studied. This difference was predominantly driven by zonal preference within the mangal and/or effects of new and full moon (lunar phase). Overall, settlement dynamics were more widely variable in South Africa, both spatially and temporally, than in Kenya. Finally, empirical physiological data from ontogenetic stages present during the reproductive process (early and late stage embryos) and from non-gravid and gravid females were used in conjunction with data mined from the existing literature to parameterise an individual based model designed to simulate reproductive output at the centre and edge of distribution of Perisesarma guttatum. Physiological data indicate that, in terms of reproductive output across increasing temperatures, populations based at the centre of their distribution presently outperform their counterparts at the edge of the species’ distribution, but reproductive output stagnated as temperature rose. Edge of distribution populations consistently increased reproductive output with increasing temperatures to eventually outperform centre of distribution populations at higher simulated temperatures. Overall, results of the physiological and settlement studies suggest that with increased climate change there may be a contraction of distributional range of the study species from high latitudes to low latitudes, contrary to general poleward shifts/migrations seen in most species, with possible contractions of the entire ecosystem mirroring the disappearance of keystone mangrove macrofauna.
- Full Text:
- Date Issued: 2016
- Authors: Mostert, Bruce Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/826 , vital:19994
- Description: After a brief respite in the mid to late 20th century, macro physiology has come to the fore in elucidating large scale ecological patterns and processes as physiological assumptions often form the backbone of many predictive theories associated with species distributions. Critically, macro physiological patterns are valuable in explaining physiological variation across multiple scales and provide insights into the effects of climate change on populations spanning a wide range of latitudes. This can assist in predicting possible distribution expansions, contractions or shifts in light of current climate change scenarios. From this perspective, investigating intra- and inter-specific physiological responses to environmental stress may contribute to better understanding and predicting the effects of climate change on geographical ranges. Further, investigating the physiological effects to environmental stresses across ontogenetic stages allows for the identification of weak links within the lifecycle of a species. Additionally, determining settlement characteristics along a latitudinal cline provides integrated indications of the sustainability of populations, highlighting vulnerable regions in terms of repopulation of viable habitats. In this context, the present study aimed at establishing how temperature, in a physiological context, may affect reproductive biology of two species of mangrove crab, Perisesarma guttatum and Uca urvillei at the centre (Kenya) and edge (South Africa) of their distributional range along the east coast of Africa and highlight possible consequences for range distributions. A third species, Neosarmatium africanum, only in South Africa, was included to provide additional interspecies comparisons. Furthermore, settlement characteristics of brachyuran populations at the centre and edge of their distributional range were considered in order to determine how settlement may contribute to population persistence. Physiological investigations at the centre and edge of distributional range and across ontogenetic stages (larvae, stage 2 and 4 embryos, non-gravid and gravid females) under the concept of oxygen and capacity limitation of thermal tolerance (OCLTT), revealed that, for both species, populations at the centre of their distribution (Kenya) were generally more robust to increasing temperatures and generally displayed greater physiological stability with increasing temperatures compared to their conspecifics in South Africa. Variability in physiological robustness between regions, did however, differ among ontogenetic stages and species but, overall, were evident throughout. Within and between regions, adaptation to oxygen extraction in both milieus (air or water) was displayed for present temperature conditions but aerial respiration largely alleviated increased thermal stress due to overcoming the limitations of reduced oxygen availability and diffusiveness in water for all bimodal ontogenetic stages. Brooding eggs proved to be a physiologically critical process with either heighted oxygen consumption for gravid females or collapse of physiological processes demonstrated by supressed oxygen consumption. The physiological cost of brooding eggs, referred to as maternal costs, was reflected in in both Perisesarma guttatum and Uca urvillei where, in most cases, maternal costs were negative. Again, aerial respiration was able to alleviated increased thermal stress, as shown by positive maternal costs indicating sustained maternal care, but this mechanism was species and regionally specific. Settlement patterns differed between the edge and centre of distribution of the species studied. This difference was predominantly driven by zonal preference within the mangal and/or effects of new and full moon (lunar phase). Overall, settlement dynamics were more widely variable in South Africa, both spatially and temporally, than in Kenya. Finally, empirical physiological data from ontogenetic stages present during the reproductive process (early and late stage embryos) and from non-gravid and gravid females were used in conjunction with data mined from the existing literature to parameterise an individual based model designed to simulate reproductive output at the centre and edge of distribution of Perisesarma guttatum. Physiological data indicate that, in terms of reproductive output across increasing temperatures, populations based at the centre of their distribution presently outperform their counterparts at the edge of the species’ distribution, but reproductive output stagnated as temperature rose. Edge of distribution populations consistently increased reproductive output with increasing temperatures to eventually outperform centre of distribution populations at higher simulated temperatures. Overall, results of the physiological and settlement studies suggest that with increased climate change there may be a contraction of distributional range of the study species from high latitudes to low latitudes, contrary to general poleward shifts/migrations seen in most species, with possible contractions of the entire ecosystem mirroring the disappearance of keystone mangrove macrofauna.
- Full Text:
- Date Issued: 2016
Thermal, spectroscopic and x-ray diffraction studies of copper(II) 1,2,4,5-Benzenetetracarboxylates and copper(II) oxalate a study of metal-organic frameworks
- Authors: Lamprecht, Emmanuel
- Date: 2008
- Subjects: Organometallic compounds Copper Oxalates -- Thermal properties Organic compounds -- Synthesis Spectrum analysis X-rays -- Diffraction
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4389 , http://hdl.handle.net/10962/d1005054
- Description: Novel and known metal organic frameworks with copper(II), sodium and 1,2,4,5-benzenetetracarboxylate were prepared by ambient precipitation, solvothermal and gel-synthesis methods, and characterized by single-crystal X-ray diffraction, X-ray powder diffraction, infrared spectroscopy, differential scanning calorimetry, and thermogravimetry with FTIR evolved-gas analysis. Some of these complexes were investigated for guest inclusion properties with water (the original guest species), methanol, ethanol and pyridine. The gel-synthesis products were the most interesting. The novel threedimensional metal-organic framework complex Cu₂ Na(OH)L·7H₂O (where L=1,2,4,5-benzenetetracarboxylate) -formed by gel-synthesis- is a covalent three-dimensional metal organic framework polymer with open channels containing both guest water molecules and water molecules coordinated to sodium. The structure collapsed on dehydration, but was essentially restored to the original structure on rehydration in moist air. On exposure of the dehydrated material to methanol and ethanol vapour, significant uptake of these solvents was observed, and the resolvated structures closely resembled that of the parent material. On heating in dry nitrogen, small amounts of methanol and ethanol remained until about 280 °C, when loss of the remaining guest triggered decomposition of the framework. The related complex, Cu₂¼(OH)½ L·7½H₂O (or possibly Cu₂⅓ (OH)⅔L·8H₂O) -formed by gel-synthesis- had a different physical appearance to Cu₂Na(OH)L·7H₂O above, but had nearly identical X-ray diffraction pattern, mid-infrared spectrum and thermal behaviour. The novel complex Cu₄Na₄L₃·14H₂O -formed by gel-synthesis- is a covalent three-dimensional metal-organic framework with small channels containing both guest water molecules and water coordinated to sodium and copper. Upon dehydration the structure collapsed, but on rehydration in moist air the original structure was partly restored. The dehydrated material did not absorb methanol. Known two-dimensional polymeric complexes [Cu₂L·6H₂O]·4H₂O and [Cu₂L·4H₂O]·2H₂O were also obtained by gel-synthesis, and were characterized and investigated for guest inclusion properties. The structures of these complexes collapsed on dehydration, and were only partly restored on rehydration in saturated water vapour. The dehydrated materials did not absorb methanol. The two-dimensional polymeric mixed-ligand complex Cu₂(pyridine)₄·6H₂O -formed very slowly by gel-synthesis- was characterized by TG-FTIR, and was shown to undergo a complicated decomposition involving the loss of water and pyridine, carbon dioxide and carbon monoxide in various stages. Solvothermal synthesis did not yield materials suitable for single-crystal X-ray diffraction studies or inclusion studies, producing only an anhydrous or hemihydrate complex with the formula Cu₂L·0.65H2O. Ambient precipitation syntheses did not yield materials suitable for singlecrystal diffraction studies, forming products approximately equivalent to the complexes [Cu₂L·6H₂O]·4H₂O and Cu₂¼(OH)½L·7 ½H₂O above. During the course of the above study it was discovered that, on changing the DSC purge from nitrogen to argon, the normally exothermic carboxylate decompositions appeared to become endothermic. The effects of the supposedly inert atmospheres of argon and nitrogen on the decomposition-mechanism of copper(II) oxalate -a well-studied copper carboxylate- were therefore studied by DSC, TG, TG-FTIR and XRPD. DSC experiments were performed in nitrogen and argon at different flow-rates, in various mixtures of nitrogen and argon, and at various heating rates. Regardless of the proportions of nitrogen and argon, the DSC residues consisted mainly of copper metal, a small amount of copper(I) oxide (cuprite) and, in some circumstances, traces of copper(II) oxide (tenorite). Also, regardless of whether TG-FTIR experiments were performed under argon or nitrogen, the gaseous decomposition products consisted mainly of carbon dioxide, with traces of carbon monoxide being detected over part of the decomposition period. Various explanations for the thermal behaviour are discussed, and it is possible that small amounts of O2 or monatomic oxygen were given off during the decomposition under argon. The design and implementation of a low-cost prototype X-ray proportional counter detector system, consisting of a hybrid analog-digital computer built using commonly available electronic components, is presented. This system was designed to replace ageing discrete-transistor designs still in use in earlier X-ray diffractometers. The prototype performs the functions of pulse-shaping, pulseheight discrimination, counting and scaling, and provides both digital and scaled analog outputs.
- Full Text:
- Date Issued: 2008
- Authors: Lamprecht, Emmanuel
- Date: 2008
- Subjects: Organometallic compounds Copper Oxalates -- Thermal properties Organic compounds -- Synthesis Spectrum analysis X-rays -- Diffraction
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4389 , http://hdl.handle.net/10962/d1005054
- Description: Novel and known metal organic frameworks with copper(II), sodium and 1,2,4,5-benzenetetracarboxylate were prepared by ambient precipitation, solvothermal and gel-synthesis methods, and characterized by single-crystal X-ray diffraction, X-ray powder diffraction, infrared spectroscopy, differential scanning calorimetry, and thermogravimetry with FTIR evolved-gas analysis. Some of these complexes were investigated for guest inclusion properties with water (the original guest species), methanol, ethanol and pyridine. The gel-synthesis products were the most interesting. The novel threedimensional metal-organic framework complex Cu₂ Na(OH)L·7H₂O (where L=1,2,4,5-benzenetetracarboxylate) -formed by gel-synthesis- is a covalent three-dimensional metal organic framework polymer with open channels containing both guest water molecules and water molecules coordinated to sodium. The structure collapsed on dehydration, but was essentially restored to the original structure on rehydration in moist air. On exposure of the dehydrated material to methanol and ethanol vapour, significant uptake of these solvents was observed, and the resolvated structures closely resembled that of the parent material. On heating in dry nitrogen, small amounts of methanol and ethanol remained until about 280 °C, when loss of the remaining guest triggered decomposition of the framework. The related complex, Cu₂¼(OH)½ L·7½H₂O (or possibly Cu₂⅓ (OH)⅔L·8H₂O) -formed by gel-synthesis- had a different physical appearance to Cu₂Na(OH)L·7H₂O above, but had nearly identical X-ray diffraction pattern, mid-infrared spectrum and thermal behaviour. The novel complex Cu₄Na₄L₃·14H₂O -formed by gel-synthesis- is a covalent three-dimensional metal-organic framework with small channels containing both guest water molecules and water coordinated to sodium and copper. Upon dehydration the structure collapsed, but on rehydration in moist air the original structure was partly restored. The dehydrated material did not absorb methanol. Known two-dimensional polymeric complexes [Cu₂L·6H₂O]·4H₂O and [Cu₂L·4H₂O]·2H₂O were also obtained by gel-synthesis, and were characterized and investigated for guest inclusion properties. The structures of these complexes collapsed on dehydration, and were only partly restored on rehydration in saturated water vapour. The dehydrated materials did not absorb methanol. The two-dimensional polymeric mixed-ligand complex Cu₂(pyridine)₄·6H₂O -formed very slowly by gel-synthesis- was characterized by TG-FTIR, and was shown to undergo a complicated decomposition involving the loss of water and pyridine, carbon dioxide and carbon monoxide in various stages. Solvothermal synthesis did not yield materials suitable for single-crystal X-ray diffraction studies or inclusion studies, producing only an anhydrous or hemihydrate complex with the formula Cu₂L·0.65H2O. Ambient precipitation syntheses did not yield materials suitable for singlecrystal diffraction studies, forming products approximately equivalent to the complexes [Cu₂L·6H₂O]·4H₂O and Cu₂¼(OH)½L·7 ½H₂O above. During the course of the above study it was discovered that, on changing the DSC purge from nitrogen to argon, the normally exothermic carboxylate decompositions appeared to become endothermic. The effects of the supposedly inert atmospheres of argon and nitrogen on the decomposition-mechanism of copper(II) oxalate -a well-studied copper carboxylate- were therefore studied by DSC, TG, TG-FTIR and XRPD. DSC experiments were performed in nitrogen and argon at different flow-rates, in various mixtures of nitrogen and argon, and at various heating rates. Regardless of the proportions of nitrogen and argon, the DSC residues consisted mainly of copper metal, a small amount of copper(I) oxide (cuprite) and, in some circumstances, traces of copper(II) oxide (tenorite). Also, regardless of whether TG-FTIR experiments were performed under argon or nitrogen, the gaseous decomposition products consisted mainly of carbon dioxide, with traces of carbon monoxide being detected over part of the decomposition period. Various explanations for the thermal behaviour are discussed, and it is possible that small amounts of O2 or monatomic oxygen were given off during the decomposition under argon. The design and implementation of a low-cost prototype X-ray proportional counter detector system, consisting of a hybrid analog-digital computer built using commonly available electronic components, is presented. This system was designed to replace ageing discrete-transistor designs still in use in earlier X-ray diffractometers. The prototype performs the functions of pulse-shaping, pulseheight discrimination, counting and scaling, and provides both digital and scaled analog outputs.
- Full Text:
- Date Issued: 2008
The thermal decomposition of copper (II) oxalate revisited
- Lamprecht, Emmanuel, Watkins, Gareth M, Brown, Michael E
- Authors: Lamprecht, Emmanuel , Watkins, Gareth M , Brown, Michael E
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6577 , http://hdl.handle.net/10962/d1004140
- Description: DSC, TG and TG-FT-IR, and XRPD have been used to examine the effects of supposedly inert atmospheres of argon and nitrogen on the mechanism of the thermal decomposition of copper(II) oxalate. The DSC curves in pure argon at 10 °C min[superscript −1] show a broad endotherm with onset at about 280 °C and maximum at about 295 °C. In mixtures of argon and nitrogen, as the proportion of argon gas is decreased, the endothermic character of the decomposition decreases until, when nitrogen is the main component, the decomposition exhibits a complex broad exothermic character. XRPD studies showed that, regardless of the proportions of nitrogen and argon, the DSC residues consisted of mainly copper metal with small amounts of copper(I) oxide (cuprite) and, under some conditions, traces of copper(II) oxide (tenorite). Various explanations for this behaviour are discussed and a possible answer lies in the disproportionation of CO[subscript 2](g) to form small quantities of O[subscript 2](g) or monatomic oxygen. The possibility exists that the exothermicity in nitrogen could be explained by reaction of the nitrogen with atomic oxygen to form N[subscript 2]O(g), but this product could not be detected using TG-FT-IR.
- Full Text:
- Date Issued: 2006
- Authors: Lamprecht, Emmanuel , Watkins, Gareth M , Brown, Michael E
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6577 , http://hdl.handle.net/10962/d1004140
- Description: DSC, TG and TG-FT-IR, and XRPD have been used to examine the effects of supposedly inert atmospheres of argon and nitrogen on the mechanism of the thermal decomposition of copper(II) oxalate. The DSC curves in pure argon at 10 °C min[superscript −1] show a broad endotherm with onset at about 280 °C and maximum at about 295 °C. In mixtures of argon and nitrogen, as the proportion of argon gas is decreased, the endothermic character of the decomposition decreases until, when nitrogen is the main component, the decomposition exhibits a complex broad exothermic character. XRPD studies showed that, regardless of the proportions of nitrogen and argon, the DSC residues consisted of mainly copper metal with small amounts of copper(I) oxide (cuprite) and, under some conditions, traces of copper(II) oxide (tenorite). Various explanations for this behaviour are discussed and a possible answer lies in the disproportionation of CO[subscript 2](g) to form small quantities of O[subscript 2](g) or monatomic oxygen. The possibility exists that the exothermicity in nitrogen could be explained by reaction of the nitrogen with atomic oxygen to form N[subscript 2]O(g), but this product could not be detected using TG-FT-IR.
- Full Text:
- Date Issued: 2006
Assessing the potential of submaximal extended duration exercise as an adjunct treatment for sub-acute schizophrenic in-patients: a pilot study
- Authors: Munnik, James Barry
- Date: 2006
- Subjects: Aerobic exercises -- Therapeutic use , Schizophrenia , Schizophrenia -- Treatment , Exercise therapy
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:3029 , http://hdl.handle.net/10962/d1002538 , Aerobic exercises -- Therapeutic use , Schizophrenia , Schizophrenia -- Treatment , Exercise therapy
- Description: Research into the therapeutic potential of aerobic exercise has proven fruitful over the past few years; however, no true experimental research undertakings have investigated the psychological benefits of aerobic exercise with schizophrenic semi-acute in-patients. The main objective of this thesis was to seek out evidence for the possibility that aerobic (submaximal long duration) exercise could be considered an adjunct treatment for hospitalised schizophrenic in-patients. In order to accomplish this objective the effects of a 45-minute walking programme, completed three days a week, for five weeks, was investigated. Various areas of mental health were explored in search of evidence of the therapeutic potential of aerobic exercise. These areas included, amongst other things: transfer and discharge rates, improvements in mood levels - Beck Depression Inventory-II (BDI-II; Beck, Steer, and Brown, 1996) Xhosa version; decreasing of anxiety levels (Beck Anxiety Inventory (BAI; Beck and Steer, 1993), Xhosa version); improved Global Assessment of Functioning (GAF; DSM-IV), Scale Scores; and decreases in the number of symptoms patients exhibited. 22 schizophrenic inpatients were randomly selected for this study and randomly assigned to either an aerobic (long duration submaximal) treatment group or (primarily anaerobic) control group. Results revealed that statistical significance could not be found in any of the treatment group's t-test results; despite the treatment group generally bordering on significance more so than the control group. Out of the five variables studied (Positive Symptoms, Negative Symptoms, BAI, BDI-II, and GAF Scale) three variables (Negative Symptoms, BDI-II, and GAF Scale) in the treatment group bordered more on significance than did the control group. Thus three (60 %) out of the five areas studied revealed that the treatment group had more significant results. This suggests an overall impression that the treatment group responded slightly better. The Researcher recommended that aerobic exercise therapy be considered a treatment protocol in psychiatric institutions and offered further suggestions pertaining to the effective implementation of these programmes. Included in these recommendations were motivational strategies and warnings about the possible negative effects of exercise therapy. A supplemental goal of this thesis was to explore all of the previously offered theoretical psychological mechanisms of positive mental change; and to seek out evidence, for or against these forces. Participants were given pre- and post- treatment quantitative interviews; as well as, qualitative posttreatment interviews where their phenomenological responses were analysed to seek out evidence of these mechanisms. Evidence of various causative factors was found and a new theoretical mechanism was proposed in this thesis.
- Full Text:
- Date Issued: 2006
- Authors: Munnik, James Barry
- Date: 2006
- Subjects: Aerobic exercises -- Therapeutic use , Schizophrenia , Schizophrenia -- Treatment , Exercise therapy
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:3029 , http://hdl.handle.net/10962/d1002538 , Aerobic exercises -- Therapeutic use , Schizophrenia , Schizophrenia -- Treatment , Exercise therapy
- Description: Research into the therapeutic potential of aerobic exercise has proven fruitful over the past few years; however, no true experimental research undertakings have investigated the psychological benefits of aerobic exercise with schizophrenic semi-acute in-patients. The main objective of this thesis was to seek out evidence for the possibility that aerobic (submaximal long duration) exercise could be considered an adjunct treatment for hospitalised schizophrenic in-patients. In order to accomplish this objective the effects of a 45-minute walking programme, completed three days a week, for five weeks, was investigated. Various areas of mental health were explored in search of evidence of the therapeutic potential of aerobic exercise. These areas included, amongst other things: transfer and discharge rates, improvements in mood levels - Beck Depression Inventory-II (BDI-II; Beck, Steer, and Brown, 1996) Xhosa version; decreasing of anxiety levels (Beck Anxiety Inventory (BAI; Beck and Steer, 1993), Xhosa version); improved Global Assessment of Functioning (GAF; DSM-IV), Scale Scores; and decreases in the number of symptoms patients exhibited. 22 schizophrenic inpatients were randomly selected for this study and randomly assigned to either an aerobic (long duration submaximal) treatment group or (primarily anaerobic) control group. Results revealed that statistical significance could not be found in any of the treatment group's t-test results; despite the treatment group generally bordering on significance more so than the control group. Out of the five variables studied (Positive Symptoms, Negative Symptoms, BAI, BDI-II, and GAF Scale) three variables (Negative Symptoms, BDI-II, and GAF Scale) in the treatment group bordered more on significance than did the control group. Thus three (60 %) out of the five areas studied revealed that the treatment group had more significant results. This suggests an overall impression that the treatment group responded slightly better. The Researcher recommended that aerobic exercise therapy be considered a treatment protocol in psychiatric institutions and offered further suggestions pertaining to the effective implementation of these programmes. Included in these recommendations were motivational strategies and warnings about the possible negative effects of exercise therapy. A supplemental goal of this thesis was to explore all of the previously offered theoretical psychological mechanisms of positive mental change; and to seek out evidence, for or against these forces. Participants were given pre- and post- treatment quantitative interviews; as well as, qualitative posttreatment interviews where their phenomenological responses were analysed to seek out evidence of these mechanisms. Evidence of various causative factors was found and a new theoretical mechanism was proposed in this thesis.
- Full Text:
- Date Issued: 2006
The development of biological tools to aid in the genetic investigation of the black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros mitochondrial genomes
- Authors: Parsons, Michelle
- Date: 2015
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/56059 , vital:26769
- Description: The black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros are found in South Africa. A decline in the populations of these species has resulted due to human activities such as habitat fragmentation and poaching. This has contributed to the loss of genetic diversity amongst the black and white rhinoceros. Conservation and anti-poaching efforts are needed to help maintain genetic diversity. These efforts could be improved through the development of non-invasive techniques to examine DNA from threatened animals. The aim of this research was to develop a molecular technique which would allow for the identification of the black and white rhinoceros and to develop a molecular technique which would allow for intraspecies genetic variation to be examined. DNA extractions were performed on matched faecal and tissue samples that were collected from two regions in South Africa. Polymerase chain reaction (PCR) primer sets were designed to investigate several regions of the rhinoceros mitochondrial genome. PCR optimisation was completed for the target regions. Sequencing was conducted on all final PCR products. The cytochrome c oxidase subunit 1 (COIi) gene allowed for the rhinoceros family to be identified. This region was digested with the HindIII restriction enzyme, which allowed for the specific identification of either the black or white rhinoceros. A subsequent region of the cytochrome c oxidase subunit 1 (COIii) as well as the D-loop, hypervariable regions (HV1 and HV2), cytochrome b (cytb) and 16s rRNA regions were investigated. These regions displayed potential for establishing geographic origin for black rhinoceros samples, whereas the D-loop and HV2 show potential for the white rhinoceros. The white rhinoceros displayed sequence variation in the HV2 and cytb region, while variation was observed in the COIi and HV1 for the black rhinoceros. All investigated target regions allowed for the rhinoceros family to be identified. The COI (COIi and COIii), HV2 and cytb regions allowed for the subspecies of rhinoceros to be identified, however the D-loop was not able to identify the white rhinoceros species. The 16s rRNA and HV1 regions allowed for the correct subspecies of rhinoceros to be identified, however as the primers were only compatible for the black rhinoceros therefore a subsequent investigation is required for the white rhinoceros. The establishment of this novel PCR based technique to identify white and black rhinoceros will allow for efficient species identification in wildlife forensic cases. A biological method was established to study intraspecies variation for the white and black rhinoceros; however the investigated target regions did not yield sufficient genetic variation. The core techniques developed in this study will be valuable for future studies that wish to investigate genetic variation in mammal species.
- Full Text:
- Date Issued: 2015
- Authors: Parsons, Michelle
- Date: 2015
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/56059 , vital:26769
- Description: The black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros are found in South Africa. A decline in the populations of these species has resulted due to human activities such as habitat fragmentation and poaching. This has contributed to the loss of genetic diversity amongst the black and white rhinoceros. Conservation and anti-poaching efforts are needed to help maintain genetic diversity. These efforts could be improved through the development of non-invasive techniques to examine DNA from threatened animals. The aim of this research was to develop a molecular technique which would allow for the identification of the black and white rhinoceros and to develop a molecular technique which would allow for intraspecies genetic variation to be examined. DNA extractions were performed on matched faecal and tissue samples that were collected from two regions in South Africa. Polymerase chain reaction (PCR) primer sets were designed to investigate several regions of the rhinoceros mitochondrial genome. PCR optimisation was completed for the target regions. Sequencing was conducted on all final PCR products. The cytochrome c oxidase subunit 1 (COIi) gene allowed for the rhinoceros family to be identified. This region was digested with the HindIII restriction enzyme, which allowed for the specific identification of either the black or white rhinoceros. A subsequent region of the cytochrome c oxidase subunit 1 (COIii) as well as the D-loop, hypervariable regions (HV1 and HV2), cytochrome b (cytb) and 16s rRNA regions were investigated. These regions displayed potential for establishing geographic origin for black rhinoceros samples, whereas the D-loop and HV2 show potential for the white rhinoceros. The white rhinoceros displayed sequence variation in the HV2 and cytb region, while variation was observed in the COIi and HV1 for the black rhinoceros. All investigated target regions allowed for the rhinoceros family to be identified. The COI (COIi and COIii), HV2 and cytb regions allowed for the subspecies of rhinoceros to be identified, however the D-loop was not able to identify the white rhinoceros species. The 16s rRNA and HV1 regions allowed for the correct subspecies of rhinoceros to be identified, however as the primers were only compatible for the black rhinoceros therefore a subsequent investigation is required for the white rhinoceros. The establishment of this novel PCR based technique to identify white and black rhinoceros will allow for efficient species identification in wildlife forensic cases. A biological method was established to study intraspecies variation for the white and black rhinoceros; however the investigated target regions did not yield sufficient genetic variation. The core techniques developed in this study will be valuable for future studies that wish to investigate genetic variation in mammal species.
- Full Text:
- Date Issued: 2015
A synecological study of the East London coast dune forests
- Authors: Burns, Michael Edmund Reid
- Date: 1987
- Subjects: Sand dune plants -- South Africa , Sand dune ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4241 , http://hdl.handle.net/10962/d1006134 , Sand dune plants -- South Africa , Sand dune ecology -- South Africa
- Description: Quantitative community descriptions, based on point quarter sample data, are made for a number of dune forest units along the East London coast. These are supported by multivariate classifications and ordinations which illustrate the inter community variation between the sampled seaward, landward and dune valley sites. Climax valley forest is floristically most characteristic and can be clearly distinguished from the seaward and landward thicket communities which tend to show a degree of similarity. Within-forest community differences are shown to be more significant than variation along the coast. This appears to indicate that climoedaphic gradients established laterally to the coast induce a greater floristic response than the rainfall gradient within the study area. The state of developnent within the dune soil profile and the rate and effect of salt spray deposition are considered to be important factors influencing dune forest succession and are discussed in some detail. An overview of certain other climatic variables as well as the geological features within the study area is also given. A phenology study of the dune forest, scrub-thicket and strand plant cornnunities shows some general patterns of flowering and fruiting phenorhythms. Although much variation was observed, there appears to be a bimodal hyperactive phenophase response which is thought to be related to rainfall or periods of favourable soil moisture conditions. A brief discussion of some of the positive and negative human influences on the coastline is given. This includes a description of the management activities carried out in the area as well as the demands placed on ·the coastal resource.
- Full Text:
- Date Issued: 1987
- Authors: Burns, Michael Edmund Reid
- Date: 1987
- Subjects: Sand dune plants -- South Africa , Sand dune ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4241 , http://hdl.handle.net/10962/d1006134 , Sand dune plants -- South Africa , Sand dune ecology -- South Africa
- Description: Quantitative community descriptions, based on point quarter sample data, are made for a number of dune forest units along the East London coast. These are supported by multivariate classifications and ordinations which illustrate the inter community variation between the sampled seaward, landward and dune valley sites. Climax valley forest is floristically most characteristic and can be clearly distinguished from the seaward and landward thicket communities which tend to show a degree of similarity. Within-forest community differences are shown to be more significant than variation along the coast. This appears to indicate that climoedaphic gradients established laterally to the coast induce a greater floristic response than the rainfall gradient within the study area. The state of developnent within the dune soil profile and the rate and effect of salt spray deposition are considered to be important factors influencing dune forest succession and are discussed in some detail. An overview of certain other climatic variables as well as the geological features within the study area is also given. A phenology study of the dune forest, scrub-thicket and strand plant cornnunities shows some general patterns of flowering and fruiting phenorhythms. Although much variation was observed, there appears to be a bimodal hyperactive phenophase response which is thought to be related to rainfall or periods of favourable soil moisture conditions. A brief discussion of some of the positive and negative human influences on the coastline is given. This includes a description of the management activities carried out in the area as well as the demands placed on ·the coastal resource.
- Full Text:
- Date Issued: 1987
Mesoscale alongshore and cross-shore transport and settlement of invertebrate larvae on the south east coast of South Africa
- Authors: Dyantyi, Siphelele Buntu
- Date: 2019
- Subjects: Marine invertebrates -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Benthic animals -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mexilhao mussel -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mytilus galloprovincialis -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Oysters -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/97007 , vital:31386
- Description: Pelagic larval stages of most marine benthic species are important in maintaining coastal populations of adults. Several physio-chemical factors such as currents, winds, larval behaviour and time have an influence on the dispersal and transport of larvae to the adult habitat but their role is however still poorly understood. The aim of this study was to investigate the alongshore and cross-shore transport and temporal delivery of invertebrate larvae at four sites (Kenton on Sea, Cannon Rocks, Schoenmakerskop and Cape St Francis) along the south east coast of Eastern Cape, South Africa. Larval distribution of several taxa was determined during two sampling periods, by collecting water samples at nearshore line transects (3 distances: 900m, 1500m and 2400m – perpendicular to the shore) and at three depths (surface, thermocline/middle, bottom), which ranged from 15m (inshore) to 50m (offshore). Physical properties (current speed and direction, dissolved oxygen, fluorescence, turbidity, temperature, salinity, pH, pressure, density and conductivity) were measured and coupled in order to further understand larval distribution. The larvae were analysed as both total abundance and separately as the abundances of a variety of taxa which were: Perna perna, Mytilus galloprovincialis, oysters, early and late nauplii and cyprids. Larval settlement and recruitment on the rocky shores were measured by monthly deployment and collection of 20 (10 each for barnacles and mussels) artificial collectors at each site, which were preserved in ethanol or frozen for further processing. Multiple Permutational Multivariate Analysis of Variance (PERMANOVA) analyses were used to test the effects of site, depth and distance from the shore for the nearshore larvae (taxa analysed separately). In addition, a distance based linear model (distLM) was performed to analyse the relationship between the total larval abundance and the above mentioned physical variables. Multiple two-way analyses of variance (ANOVA) were performed to test the effects of months and sites on the settlement and recruitment of the larvae (P. perna, M. galloprovincialis, other bivalves, cyprids and juvenile barnacles) arriving on the shore. For the nearshore larval distribution, results from the PERMANOVAs revealed that most taxa showed a significant site and depth interactions with the exception of ‘early nauplii’ taxon. Also nearly all taxa were found within the thermocline, besides ‘oyster’ and ‘cyprids’ which were located at thermocline or bottom. Larvae were also located at variable distances from the shore, with most occurring at the offshore stations. Furthermore, there was a geographical separation of larval abundance according to sites, with most larvae located at Cannon Rocks and Kenton on Sea and least at Schoenmakerskop and Cape St Francis. For the settlement and recruitment, most taxa showed a seasonal trend, with the highest abundance of settlers and recruits expectedly appearing during the summer months of the sampling period. Additionally there was a site effect for most taxa (P. perna, M. galloprovincialis, other bivalves and juvenile barnacles), where settlers and recruits were mostly found at Cannon Rocks. Significant differences in abundance of settlers and recruits amongst the four sites indicate spatial and temporal variability for the targeted 180km stretch of coast. Overall for this study, taxon and ontogenetic stage of larvae were important in the distribution and abundance of larvae. Throughout the time frame of nearshore and intertidal sampling, Cannon Rocks consistently resulted as a ‘hot spot’ for larval abundance, settlement and recruitment, while a broad west to east separation was also observed. These results hence highlight that within this stretch of c.180km coast, time, taxon, ontogeny and post-settlement factors influence early dynamics of benthic populations.
- Full Text:
- Date Issued: 2019
- Authors: Dyantyi, Siphelele Buntu
- Date: 2019
- Subjects: Marine invertebrates -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Benthic animals -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mexilhao mussel -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mytilus galloprovincialis -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Oysters -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/97007 , vital:31386
- Description: Pelagic larval stages of most marine benthic species are important in maintaining coastal populations of adults. Several physio-chemical factors such as currents, winds, larval behaviour and time have an influence on the dispersal and transport of larvae to the adult habitat but their role is however still poorly understood. The aim of this study was to investigate the alongshore and cross-shore transport and temporal delivery of invertebrate larvae at four sites (Kenton on Sea, Cannon Rocks, Schoenmakerskop and Cape St Francis) along the south east coast of Eastern Cape, South Africa. Larval distribution of several taxa was determined during two sampling periods, by collecting water samples at nearshore line transects (3 distances: 900m, 1500m and 2400m – perpendicular to the shore) and at three depths (surface, thermocline/middle, bottom), which ranged from 15m (inshore) to 50m (offshore). Physical properties (current speed and direction, dissolved oxygen, fluorescence, turbidity, temperature, salinity, pH, pressure, density and conductivity) were measured and coupled in order to further understand larval distribution. The larvae were analysed as both total abundance and separately as the abundances of a variety of taxa which were: Perna perna, Mytilus galloprovincialis, oysters, early and late nauplii and cyprids. Larval settlement and recruitment on the rocky shores were measured by monthly deployment and collection of 20 (10 each for barnacles and mussels) artificial collectors at each site, which were preserved in ethanol or frozen for further processing. Multiple Permutational Multivariate Analysis of Variance (PERMANOVA) analyses were used to test the effects of site, depth and distance from the shore for the nearshore larvae (taxa analysed separately). In addition, a distance based linear model (distLM) was performed to analyse the relationship between the total larval abundance and the above mentioned physical variables. Multiple two-way analyses of variance (ANOVA) were performed to test the effects of months and sites on the settlement and recruitment of the larvae (P. perna, M. galloprovincialis, other bivalves, cyprids and juvenile barnacles) arriving on the shore. For the nearshore larval distribution, results from the PERMANOVAs revealed that most taxa showed a significant site and depth interactions with the exception of ‘early nauplii’ taxon. Also nearly all taxa were found within the thermocline, besides ‘oyster’ and ‘cyprids’ which were located at thermocline or bottom. Larvae were also located at variable distances from the shore, with most occurring at the offshore stations. Furthermore, there was a geographical separation of larval abundance according to sites, with most larvae located at Cannon Rocks and Kenton on Sea and least at Schoenmakerskop and Cape St Francis. For the settlement and recruitment, most taxa showed a seasonal trend, with the highest abundance of settlers and recruits expectedly appearing during the summer months of the sampling period. Additionally there was a site effect for most taxa (P. perna, M. galloprovincialis, other bivalves and juvenile barnacles), where settlers and recruits were mostly found at Cannon Rocks. Significant differences in abundance of settlers and recruits amongst the four sites indicate spatial and temporal variability for the targeted 180km stretch of coast. Overall for this study, taxon and ontogenetic stage of larvae were important in the distribution and abundance of larvae. Throughout the time frame of nearshore and intertidal sampling, Cannon Rocks consistently resulted as a ‘hot spot’ for larval abundance, settlement and recruitment, while a broad west to east separation was also observed. These results hence highlight that within this stretch of c.180km coast, time, taxon, ontogeny and post-settlement factors influence early dynamics of benthic populations.
- Full Text:
- Date Issued: 2019
Reproductive biology of important invasive plants in the Eastern Cape Province of South Africa
- Authors: Thorne, Cara-Jayne
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3683 , vital:20535
- Description: Baker’s rule predicts species capable of uniparental reproduction are more likely to establish after long distance dispersal (or introduction in the case of invasive plants), thus the ability to undergo autonomous self-pollination should promote colonization. An investigation into the reproductive biology of eleven invasive species in the Eastern Cape Province of South Africa between 2012 and 2014 showed strong support for Baker’s law. Breeding system results showed evidence of self-compatibility in eight species, ten species were capable of autonomous self-pollination, and only three species showed evidence of varying levels of self-incompatibility. These results provide evdence that autonomous self-pollination occurs more frequently among invasive species, self-compatible species more frequently become invasive compared with self-incompatible species and that autogamous species should have a larger invasive range. Co-opting suitable local pollinators may be problematic for invasive plants, especially those with highly specialized pollination systems. The species investigated appear to be largely independent of pollinators, mostly setting seed in the absence of pollinators. Despite this, all eleven invasive plant species are regularly visited by a variety of generalist pollinators including Apis mellifera, Xylocopa bees and Allodapini species. Pollinators all carried substantial pollen loads, even managing to extract pollen from more specialized plants, such as the poricidal anthers of Solanum species, and frequently came into contact with both anthers and stigmas. Considering most of theses species are capable of autonomous self-pollination, their reliance on pollinators may be low. Even the most self-incompatible species, Passiflora caerulea, appears to have successfully co-opted local pollinators (honeybees and carpenter bees), ensuring successful pollination and seed set. The ability for cross-pollination by local pollinators allows for some degree of genetic variation within invasive plant populations, especially for self-incompatible species. Inadequate pollen deposition by unreliable or inefficient pollinators, or reduced resource availability, can result in pollen limitation. Invasive plant species may be especially susceptible, with three of the plant species investiagted showing possible pollen limitation at the level of seed set, while the remaining nine invasive plant species showed no evidence of pollen limitation in South Africa. The ability to utilize uniparental reproduction (as Baker’s law predicted), and co-opt local pollinators has allowed invasive plants in the Eastern Cape to successfully establish and persist after introduction. Hence, the inclusion of reproductive traits of plants should therefore be included in risk assessments for future plant invaders.
- Full Text:
- Date Issued: 2016
- Authors: Thorne, Cara-Jayne
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3683 , vital:20535
- Description: Baker’s rule predicts species capable of uniparental reproduction are more likely to establish after long distance dispersal (or introduction in the case of invasive plants), thus the ability to undergo autonomous self-pollination should promote colonization. An investigation into the reproductive biology of eleven invasive species in the Eastern Cape Province of South Africa between 2012 and 2014 showed strong support for Baker’s law. Breeding system results showed evidence of self-compatibility in eight species, ten species were capable of autonomous self-pollination, and only three species showed evidence of varying levels of self-incompatibility. These results provide evdence that autonomous self-pollination occurs more frequently among invasive species, self-compatible species more frequently become invasive compared with self-incompatible species and that autogamous species should have a larger invasive range. Co-opting suitable local pollinators may be problematic for invasive plants, especially those with highly specialized pollination systems. The species investigated appear to be largely independent of pollinators, mostly setting seed in the absence of pollinators. Despite this, all eleven invasive plant species are regularly visited by a variety of generalist pollinators including Apis mellifera, Xylocopa bees and Allodapini species. Pollinators all carried substantial pollen loads, even managing to extract pollen from more specialized plants, such as the poricidal anthers of Solanum species, and frequently came into contact with both anthers and stigmas. Considering most of theses species are capable of autonomous self-pollination, their reliance on pollinators may be low. Even the most self-incompatible species, Passiflora caerulea, appears to have successfully co-opted local pollinators (honeybees and carpenter bees), ensuring successful pollination and seed set. The ability for cross-pollination by local pollinators allows for some degree of genetic variation within invasive plant populations, especially for self-incompatible species. Inadequate pollen deposition by unreliable or inefficient pollinators, or reduced resource availability, can result in pollen limitation. Invasive plant species may be especially susceptible, with three of the plant species investiagted showing possible pollen limitation at the level of seed set, while the remaining nine invasive plant species showed no evidence of pollen limitation in South Africa. The ability to utilize uniparental reproduction (as Baker’s law predicted), and co-opt local pollinators has allowed invasive plants in the Eastern Cape to successfully establish and persist after introduction. Hence, the inclusion of reproductive traits of plants should therefore be included in risk assessments for future plant invaders.
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- Date Issued: 2016