No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations:
- Kimuda, Magambo P, Noyes, Harry, Mulindwa, Julius, Enyaru, John, Alibu, Vincent P, Sidibe, Issa, Mumba Ngoyi, Dieuodonne, Hertz-Fowler, Christiane, MacLeod, Annette, Tastan Bishop, Özlem, Matovu, Enock
- Authors: Kimuda, Magambo P , Noyes, Harry , Mulindwa, Julius , Enyaru, John , Alibu, Vincent P , Sidibe, Issa , Mumba Ngoyi, Dieuodonne , Hertz-Fowler, Christiane , MacLeod, Annette , Tastan Bishop, Özlem , Matovu, Enock
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162924 , vital:40997 , https://doi.org/10.1371/journal.pntd.0006300
- Description: Human African trypanosomiasis (HAT) manifests as an acute form caused by Trypanosoma brucei rhodesiense (Tbr) and a chronic form caused by Trypanosoma brucei gambiense (Tbg). Previous studies have suggested a host genetic role in infection outcomes, particularly for APOL1. We have undertaken candidate gene association studies (CGAS) in a Ugandan Tbr and a Tbg HAT endemic area, to determine whether polymorphisms in IL10, IL8, IL4, HLAG, TNFA, TNX4LB, IL6, IFNG, MIF, APOL1, HLAA, IL1B, IL4R, IL12B, IL12R, HP, HPR, and CFH have a role in HAT.
- Full Text:
- Date Issued: 2018
- Authors: Kimuda, Magambo P , Noyes, Harry , Mulindwa, Julius , Enyaru, John , Alibu, Vincent P , Sidibe, Issa , Mumba Ngoyi, Dieuodonne , Hertz-Fowler, Christiane , MacLeod, Annette , Tastan Bishop, Özlem , Matovu, Enock
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162924 , vital:40997 , https://doi.org/10.1371/journal.pntd.0006300
- Description: Human African trypanosomiasis (HAT) manifests as an acute form caused by Trypanosoma brucei rhodesiense (Tbr) and a chronic form caused by Trypanosoma brucei gambiense (Tbg). Previous studies have suggested a host genetic role in infection outcomes, particularly for APOL1. We have undertaken candidate gene association studies (CGAS) in a Ugandan Tbr and a Tbg HAT endemic area, to determine whether polymorphisms in IL10, IL8, IL4, HLAG, TNFA, TNX4LB, IL6, IFNG, MIF, APOL1, HLAA, IL1B, IL4R, IL12B, IL12R, HP, HPR, and CFH have a role in HAT.
- Full Text:
- Date Issued: 2018
Bioinformatics education—perspectives and challenges out of Africa
- Tastan Bishop, Özlem, Adebiyi, Ezekiel F, Alzohairy, Ahmed M, Everett, Dean B, Ghedira, Kais, Ghouila, Amel, Kumuthini, Judit, Mulder, Nicola J, Panji, Sumir, Patterton, Hugh-G
- Authors: Tastan Bishop, Özlem , Adebiyi, Ezekiel F , Alzohairy, Ahmed M , Everett, Dean B , Ghedira, Kais , Ghouila, Amel , Kumuthini, Judit , Mulder, Nicola J , Panji, Sumir , Patterton, Hugh-G
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123244 , vital:35420 , https://doi.10.1093/bib/bbu022
- Description: The discipline of bioinformatics has developed rapidly since the complete sequencing of the first genomes in the 1990s.The development of many high-throughput techniques during the last decades has ensured that bioinformatics has grown into a discipline that overlaps with, and is required for, the modern practice of virtually every field in the life sciences. This has placed a scientific premium on the availability of skilled bioinformaticians, a qualification that is extremely scarce on the African continent. The reasons for this are numerous, although the absence of a skilled bioinformatician at academic institutions to initiate a training process and build sustained capacity seems to be a common African shortcoming.This dearth of bioinformatics expertise has had a knock-on effect on the establishment of many modern high-throughput projects at African institutes, including the comprehensive and systematic analysis of genomes from African populations, which are among the most genetically diverse anywhere on the planet. Recent funding initiatives from the National Institutes of Health and theWellcomeTrust are aimed at ameliorating this shortcoming. In this paper, we discuss the problems that have limited the establishment of the bioinformatics field in Africa, as well as propose specific actions that will help with the education and training of bioinformaticians on the continent. This is an absolute requirement in anticipation of a boom in high-throughput approaches to human health issues unique to data from African populations.
- Full Text:
- Date Issued: 2014
- Authors: Tastan Bishop, Özlem , Adebiyi, Ezekiel F , Alzohairy, Ahmed M , Everett, Dean B , Ghedira, Kais , Ghouila, Amel , Kumuthini, Judit , Mulder, Nicola J , Panji, Sumir , Patterton, Hugh-G
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123244 , vital:35420 , https://doi.10.1093/bib/bbu022
- Description: The discipline of bioinformatics has developed rapidly since the complete sequencing of the first genomes in the 1990s.The development of many high-throughput techniques during the last decades has ensured that bioinformatics has grown into a discipline that overlaps with, and is required for, the modern practice of virtually every field in the life sciences. This has placed a scientific premium on the availability of skilled bioinformaticians, a qualification that is extremely scarce on the African continent. The reasons for this are numerous, although the absence of a skilled bioinformatician at academic institutions to initiate a training process and build sustained capacity seems to be a common African shortcoming.This dearth of bioinformatics expertise has had a knock-on effect on the establishment of many modern high-throughput projects at African institutes, including the comprehensive and systematic analysis of genomes from African populations, which are among the most genetically diverse anywhere on the planet. Recent funding initiatives from the National Institutes of Health and theWellcomeTrust are aimed at ameliorating this shortcoming. In this paper, we discuss the problems that have limited the establishment of the bioinformatics field in Africa, as well as propose specific actions that will help with the education and training of bioinformaticians on the continent. This is an absolute requirement in anticipation of a boom in high-throughput approaches to human health issues unique to data from African populations.
- Full Text:
- Date Issued: 2014
The development of biological tools to aid in the genetic investigation of the black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros mitochondrial genomes
- Authors: Parsons, Michelle
- Date: 2015
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/56059 , vital:26769
- Description: The black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros are found in South Africa. A decline in the populations of these species has resulted due to human activities such as habitat fragmentation and poaching. This has contributed to the loss of genetic diversity amongst the black and white rhinoceros. Conservation and anti-poaching efforts are needed to help maintain genetic diversity. These efforts could be improved through the development of non-invasive techniques to examine DNA from threatened animals. The aim of this research was to develop a molecular technique which would allow for the identification of the black and white rhinoceros and to develop a molecular technique which would allow for intraspecies genetic variation to be examined. DNA extractions were performed on matched faecal and tissue samples that were collected from two regions in South Africa. Polymerase chain reaction (PCR) primer sets were designed to investigate several regions of the rhinoceros mitochondrial genome. PCR optimisation was completed for the target regions. Sequencing was conducted on all final PCR products. The cytochrome c oxidase subunit 1 (COIi) gene allowed for the rhinoceros family to be identified. This region was digested with the HindIII restriction enzyme, which allowed for the specific identification of either the black or white rhinoceros. A subsequent region of the cytochrome c oxidase subunit 1 (COIii) as well as the D-loop, hypervariable regions (HV1 and HV2), cytochrome b (cytb) and 16s rRNA regions were investigated. These regions displayed potential for establishing geographic origin for black rhinoceros samples, whereas the D-loop and HV2 show potential for the white rhinoceros. The white rhinoceros displayed sequence variation in the HV2 and cytb region, while variation was observed in the COIi and HV1 for the black rhinoceros. All investigated target regions allowed for the rhinoceros family to be identified. The COI (COIi and COIii), HV2 and cytb regions allowed for the subspecies of rhinoceros to be identified, however the D-loop was not able to identify the white rhinoceros species. The 16s rRNA and HV1 regions allowed for the correct subspecies of rhinoceros to be identified, however as the primers were only compatible for the black rhinoceros therefore a subsequent investigation is required for the white rhinoceros. The establishment of this novel PCR based technique to identify white and black rhinoceros will allow for efficient species identification in wildlife forensic cases. A biological method was established to study intraspecies variation for the white and black rhinoceros; however the investigated target regions did not yield sufficient genetic variation. The core techniques developed in this study will be valuable for future studies that wish to investigate genetic variation in mammal species.
- Full Text:
- Date Issued: 2015
- Authors: Parsons, Michelle
- Date: 2015
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/56059 , vital:26769
- Description: The black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros are found in South Africa. A decline in the populations of these species has resulted due to human activities such as habitat fragmentation and poaching. This has contributed to the loss of genetic diversity amongst the black and white rhinoceros. Conservation and anti-poaching efforts are needed to help maintain genetic diversity. These efforts could be improved through the development of non-invasive techniques to examine DNA from threatened animals. The aim of this research was to develop a molecular technique which would allow for the identification of the black and white rhinoceros and to develop a molecular technique which would allow for intraspecies genetic variation to be examined. DNA extractions were performed on matched faecal and tissue samples that were collected from two regions in South Africa. Polymerase chain reaction (PCR) primer sets were designed to investigate several regions of the rhinoceros mitochondrial genome. PCR optimisation was completed for the target regions. Sequencing was conducted on all final PCR products. The cytochrome c oxidase subunit 1 (COIi) gene allowed for the rhinoceros family to be identified. This region was digested with the HindIII restriction enzyme, which allowed for the specific identification of either the black or white rhinoceros. A subsequent region of the cytochrome c oxidase subunit 1 (COIii) as well as the D-loop, hypervariable regions (HV1 and HV2), cytochrome b (cytb) and 16s rRNA regions were investigated. These regions displayed potential for establishing geographic origin for black rhinoceros samples, whereas the D-loop and HV2 show potential for the white rhinoceros. The white rhinoceros displayed sequence variation in the HV2 and cytb region, while variation was observed in the COIi and HV1 for the black rhinoceros. All investigated target regions allowed for the rhinoceros family to be identified. The COI (COIi and COIii), HV2 and cytb regions allowed for the subspecies of rhinoceros to be identified, however the D-loop was not able to identify the white rhinoceros species. The 16s rRNA and HV1 regions allowed for the correct subspecies of rhinoceros to be identified, however as the primers were only compatible for the black rhinoceros therefore a subsequent investigation is required for the white rhinoceros. The establishment of this novel PCR based technique to identify white and black rhinoceros will allow for efficient species identification in wildlife forensic cases. A biological method was established to study intraspecies variation for the white and black rhinoceros; however the investigated target regions did not yield sufficient genetic variation. The core techniques developed in this study will be valuable for future studies that wish to investigate genetic variation in mammal species.
- Full Text:
- Date Issued: 2015
Effect of a low density dust shell on the propagation of gravitational waves:
- Bishop, Nigel T, van der Walt, Petrus J, Naidoo, Monos
- Authors: Bishop, Nigel T , van der Walt, Petrus J , Naidoo, Monos
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/159935 , vital:40357 , https://0-doi.org.wam.seals.ac.za/10.1007/s10714-020-02740-9
- Description: Using the Bondi-Sachs formalism, the problem of a gravitational wave source surrounded by a spherical dust shell is considered. Using linearized perturbation theory, the geometry is found in the regions: in the shell, exterior to the shell, and interior to the shell. It is found that the dust shell causes the gravitational wave to be modified both in magnitude and phase, but without any energy being transferred to or from the dust.
- Full Text:
- Date Issued: 2020
- Authors: Bishop, Nigel T , van der Walt, Petrus J , Naidoo, Monos
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/159935 , vital:40357 , https://0-doi.org.wam.seals.ac.za/10.1007/s10714-020-02740-9
- Description: Using the Bondi-Sachs formalism, the problem of a gravitational wave source surrounded by a spherical dust shell is considered. Using linearized perturbation theory, the geometry is found in the regions: in the shell, exterior to the shell, and interior to the shell. It is found that the dust shell causes the gravitational wave to be modified both in magnitude and phase, but without any energy being transferred to or from the dust.
- Full Text:
- Date Issued: 2020
How to establish a bioinformatics postgraduate degree programme—a case study from South Africa
- Machanick, Philip, Tastan Bishop, Özlem
- Authors: Machanick, Philip , Tastan Bishop, Özlem
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124641 , vital:35641 , https://doi.10.1093/bib/bbu014
- Description: The Research Unit in Bioinformatics at Rhodes University (RUBi), South Africa, offers a Masters of Science in Bioinformatics.Growing demand for bioinformatics qualifications results in applications from across Africa.Courses aim to bridge gaps in the diverse backgrounds of students who range from biologists with no prior computing exposure to computer scientists with no biology background. The programme is evenly split between coursework and research, with diverse modules from a range of departments coveringmathematics, statistics, computer science and biology, with emphasis on application to bioinformatics research. The early focus on research helps bring students up to speed with working as a researcher. We measure success of the programme by the high rate of subsequent entry to PhD study: 10 of 14 students who completed in the years 2011-2013.
- Full Text:
- Date Issued: 2014
- Authors: Machanick, Philip , Tastan Bishop, Özlem
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124641 , vital:35641 , https://doi.10.1093/bib/bbu014
- Description: The Research Unit in Bioinformatics at Rhodes University (RUBi), South Africa, offers a Masters of Science in Bioinformatics.Growing demand for bioinformatics qualifications results in applications from across Africa.Courses aim to bridge gaps in the diverse backgrounds of students who range from biologists with no prior computing exposure to computer scientists with no biology background. The programme is evenly split between coursework and research, with diverse modules from a range of departments coveringmathematics, statistics, computer science and biology, with emphasis on application to bioinformatics research. The early focus on research helps bring students up to speed with working as a researcher. We measure success of the programme by the high rate of subsequent entry to PhD study: 10 of 14 students who completed in the years 2011-2013.
- Full Text:
- Date Issued: 2014
Inhibitor search and variant analysis of Acetylcholinesterase
- Authors: Ras, Harnaud
- Date: 2021-04
- Subjects: Acetylcholinesterase , Alzheimer's disease , Acetylcholinesterase -- Inhibitors , Alzheimer's disease -- Chemotherapy , Cerebrovascular disease -- Treatment , Molecular mechanics Poisson–Boltzmann surface area (MM-PBSA)
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178191 , vital:42919
- Description: Acetylcholinesterase (AChE) inhibition is used to treat Alzheimer's disease by increasing the availability of acetylcholine to carry nerve signals in the brain. The response to this treatment varies widely, which may be due to altered affnity to the current drugs caused by genetic variation. Various negative side-effects limit their use. As this is one of the only available therapeutic drug targets to treat Alzheimer's disease, decreasing the negative effects is of great importance. AChE is involved in biological processes that occur after acute ischemic stroke. Stroke is the third leading cause of death worldwide, and 87% of all stroke cases belong to ischemic stroke. AchEI (cholinesterase inhibitors) have been suggested to have properties that lower the risk of stroke. AChE is one of 15 verified drug targets under study for treatment of stroke. In addition to Alzheimer's disease and stroke, Lewy body disease (LBD) may be treated using cholinesterase inhibitors. The goals of this study are to find inhibitors that can potentially be used to treat Alzheimer's disease and/or stroke and to investigate variants which may affect protein dynamics and function. Two variants were analyzed, P247L and T229S. Molecular simulation of the P247L variant resulted in a disruption in protein dynamics in comparison to the wildtype. A total of 5728 molecules were screened and 10 nanosecond simulations were used to narrow down the set of compounds. The four best performing molecules were simulated for 10 nanoseconds. MM-PBSA was performed to identify molecules with high binding free energies. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Ras, Harnaud
- Date: 2021-04
- Subjects: Acetylcholinesterase , Alzheimer's disease , Acetylcholinesterase -- Inhibitors , Alzheimer's disease -- Chemotherapy , Cerebrovascular disease -- Treatment , Molecular mechanics Poisson–Boltzmann surface area (MM-PBSA)
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178191 , vital:42919
- Description: Acetylcholinesterase (AChE) inhibition is used to treat Alzheimer's disease by increasing the availability of acetylcholine to carry nerve signals in the brain. The response to this treatment varies widely, which may be due to altered affnity to the current drugs caused by genetic variation. Various negative side-effects limit their use. As this is one of the only available therapeutic drug targets to treat Alzheimer's disease, decreasing the negative effects is of great importance. AChE is involved in biological processes that occur after acute ischemic stroke. Stroke is the third leading cause of death worldwide, and 87% of all stroke cases belong to ischemic stroke. AchEI (cholinesterase inhibitors) have been suggested to have properties that lower the risk of stroke. AChE is one of 15 verified drug targets under study for treatment of stroke. In addition to Alzheimer's disease and stroke, Lewy body disease (LBD) may be treated using cholinesterase inhibitors. The goals of this study are to find inhibitors that can potentially be used to treat Alzheimer's disease and/or stroke and to investigate variants which may affect protein dynamics and function. Two variants were analyzed, P247L and T229S. Molecular simulation of the P247L variant resulted in a disruption in protein dynamics in comparison to the wildtype. A total of 5728 molecules were screened and 10 nanosecond simulations were used to narrow down the set of compounds. The four best performing molecules were simulated for 10 nanoseconds. MM-PBSA was performed to identify molecules with high binding free energies. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
Condolence letter to Sheila Burnett from Brian Favell
- Type: Image
- Identifier: http://hdl.handle.net/10962/17316 , vital:22237 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0024
- Full Text:
- Type: Image
- Identifier: http://hdl.handle.net/10962/17316 , vital:22237 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0024
- Full Text:
Condolence letter to Sheila Burnett from Bishop Stradling
- Date: 1994-08-23
- Subjects: Burnett, Bill Bendyshe -- 1917-1994 Condolence notes Burnett family
- Type: Image
- Identifier: http://hdl.handle.net/10962/17269 , vital:22232 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0022
- Description: This collection contains the letters of condolences, addressed to Sheila Burnett on the death of her husband Bill Bendyshe Burnett, who died on the 23rd of August 1994.
- Full Text:
- Date Issued: 1994-08-23
- Date: 1994-08-23
- Subjects: Burnett, Bill Bendyshe -- 1917-1994 Condolence notes Burnett family
- Type: Image
- Identifier: http://hdl.handle.net/10962/17269 , vital:22232 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0022
- Description: This collection contains the letters of condolences, addressed to Sheila Burnett on the death of her husband Bill Bendyshe Burnett, who died on the 23rd of August 1994.
- Full Text:
- Date Issued: 1994-08-23
Igazi Lemvana
- Queenstown Roman Catholic Cathedral ordination choir of 1984, Banana, C., President Reverand, Dargie, Dave
- Authors: Queenstown Roman Catholic Cathedral ordination choir of 1984 , Banana, C., President Reverand , Dargie, Dave
- Date: 1984
- Subjects: Folk music , Sacred music , Field recordings , Africa, Sub-Saharan , Africa South Africa Queenstown sa
- Language: IsiXhosa
- Type: sound recordings , field recordings , sound recording-musical
- Identifier: http://hdl.handle.net/10962/352706 , vital:64155 , International Library of African Music, Rhodes University, Makhanda, South Africa , Dave Dargie Field Tapes, Rhodes University, Makhanda, South Africa , DDC362b-09
- Description: Catholic Mass hymn sung for the ordination of Bishop Herbert Lenhof with marimba accompaniment
- Full Text: false
- Date Issued: 1984
- Authors: Queenstown Roman Catholic Cathedral ordination choir of 1984 , Banana, C., President Reverand , Dargie, Dave
- Date: 1984
- Subjects: Folk music , Sacred music , Field recordings , Africa, Sub-Saharan , Africa South Africa Queenstown sa
- Language: IsiXhosa
- Type: sound recordings , field recordings , sound recording-musical
- Identifier: http://hdl.handle.net/10962/352706 , vital:64155 , International Library of African Music, Rhodes University, Makhanda, South Africa , Dave Dargie Field Tapes, Rhodes University, Makhanda, South Africa , DDC362b-09
- Description: Catholic Mass hymn sung for the ordination of Bishop Herbert Lenhof with marimba accompaniment
- Full Text: false
- Date Issued: 1984
Phenotypic plasticity of metabolic rate in an afrotropical bird species (Euplectes orix) across a temperature gradient
- Van de Ven, Tanja Maria Francisca Nicole
- Authors: Van de Ven, Tanja Maria Francisca Nicole
- Date: 2012
- Subjects: Phenotypic plasticity , Evolutionary genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10718 , http://hdl.handle.net/10948/d1012659 , Phenotypic plasticity , Evolutionary genetics
- Description: Avian species are known to have the capacity to respond to environmental changes through physiological adjustments. The process whereby organisms adjust their phenotype without genetic change is termed phenotypic plasticity and it is mostly observed to be a phenotypic improvement to ecological challenges. Metabolic rate (MR), which is the rate of energy expenditure in a species, is a highly flexible physiological parameter which results in a great diversity of avian standardised metabolic rates. Like birds from high latitudes, Afrotropical bird species are expected to have the capacity to adjust their energy expenditure to match the availability of resources. Previous studies on the flexibility of physiological parameters in birds have focused on the magnitude of change of physiological adjustments and the cues inducing these changes. Comparative research has furthermore investigated metabolic rates across aridity, altitude, latitude and temperature gradients. Recently, a clear dichotomy has become evident with elevated metabolic rates observed in high latitude birds in winter and a down-regulation of metabolic rates observed in birds exposed to low latitude mild winters. In this study, the shape of the reaction norm, the magnitude, the reversibility, the direction and the rate of change of two physiological parameters, basal metabolic rate (BMR) and summit metabolic rate (Msum), were investigated in a coastal and an inland population of Southern Red Bishops (Euplectes orix) through seasonal acclimatisation and laboratory acclimation. Summer and winter basal metabolic rates as well as body mass, were highly flexible traits in free-ranging coastal and inland Red Bishops. Birds acclimatised to a mild coastal climate in winter exhibited reduced basal and summit metabolic rates, whereas birds originating from a more variable inland climate increased basal metabolic rate in winter, but did not show increases of Msum in winter. Red Bishops responded to short term thermal acclimation under laboratory conditions by gradually changing body mass. Acclimation periods of 21 days revealed a negative relationship between body mass and acclimation air temperature. Peak responses of basal metabolic rate to ambient temperature change were observed in both coastal and inland birds between two and eight days after the change in acclimation air temperature. The influences of seasonal acclimatisation on energy expenditure differed between coastal and inland birds, however, during laboratory acclimation individuals from the two populations showed no difference in response. Within the individuals of the coastal and inland Southern Red Bishops, phenotypic flexibility is observed in body mass, basal metabolic rate and summit metabolic rate as a response to environmental changes. This flexibility is thought to increase thermoregulatory capacities of the Southern Red Bishop in different habitats and climates.
- Full Text:
- Date Issued: 2012
- Authors: Van de Ven, Tanja Maria Francisca Nicole
- Date: 2012
- Subjects: Phenotypic plasticity , Evolutionary genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10718 , http://hdl.handle.net/10948/d1012659 , Phenotypic plasticity , Evolutionary genetics
- Description: Avian species are known to have the capacity to respond to environmental changes through physiological adjustments. The process whereby organisms adjust their phenotype without genetic change is termed phenotypic plasticity and it is mostly observed to be a phenotypic improvement to ecological challenges. Metabolic rate (MR), which is the rate of energy expenditure in a species, is a highly flexible physiological parameter which results in a great diversity of avian standardised metabolic rates. Like birds from high latitudes, Afrotropical bird species are expected to have the capacity to adjust their energy expenditure to match the availability of resources. Previous studies on the flexibility of physiological parameters in birds have focused on the magnitude of change of physiological adjustments and the cues inducing these changes. Comparative research has furthermore investigated metabolic rates across aridity, altitude, latitude and temperature gradients. Recently, a clear dichotomy has become evident with elevated metabolic rates observed in high latitude birds in winter and a down-regulation of metabolic rates observed in birds exposed to low latitude mild winters. In this study, the shape of the reaction norm, the magnitude, the reversibility, the direction and the rate of change of two physiological parameters, basal metabolic rate (BMR) and summit metabolic rate (Msum), were investigated in a coastal and an inland population of Southern Red Bishops (Euplectes orix) through seasonal acclimatisation and laboratory acclimation. Summer and winter basal metabolic rates as well as body mass, were highly flexible traits in free-ranging coastal and inland Red Bishops. Birds acclimatised to a mild coastal climate in winter exhibited reduced basal and summit metabolic rates, whereas birds originating from a more variable inland climate increased basal metabolic rate in winter, but did not show increases of Msum in winter. Red Bishops responded to short term thermal acclimation under laboratory conditions by gradually changing body mass. Acclimation periods of 21 days revealed a negative relationship between body mass and acclimation air temperature. Peak responses of basal metabolic rate to ambient temperature change were observed in both coastal and inland birds between two and eight days after the change in acclimation air temperature. The influences of seasonal acclimatisation on energy expenditure differed between coastal and inland birds, however, during laboratory acclimation individuals from the two populations showed no difference in response. Within the individuals of the coastal and inland Southern Red Bishops, phenotypic flexibility is observed in body mass, basal metabolic rate and summit metabolic rate as a response to environmental changes. This flexibility is thought to increase thermoregulatory capacities of the Southern Red Bishop in different habitats and climates.
- Full Text:
- Date Issued: 2012
Condolence letter to Sheila Burnett from George and Eileen Carey, page 2
- Type: Image
- Identifier: http://hdl.handle.net/10962/15784 , vital:22078 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 004
- Full Text:
- Type: Image
- Identifier: http://hdl.handle.net/10962/15784 , vital:22078 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 004
- Full Text:
Fungal remediation of winery and distillery wastewaters using Trametes pubescens MB 89 and the enhanced production of a high-value enzyme therein
- Authors: Strong, Peter James
- Date: 2008
- Subjects: Fungal remediation Distilleries -- Waste disposal Wine and wine making -- Waste disposal Bioremediation Laccase Enzymes -- Biotechnology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3932 , http://hdl.handle.net/10962/d1003991
- Description: In this study white-rot fungi were investigated for their efficiency at distillery wastewater remediation and the production of laccase as a valuable by-product. Distillery wastewaters are high in organic load and low in pH. The presence of phenolic compounds can lead to extremely colour-rich wastewaters and can be toxic to microorganisms. The presence of the inorganic ions may also affect biological treatment. White-rot fungi are unique among eukaryotic or prokaryotic microbes in possessing powerful oxidative enzyme systems that can degrade lignin to carbon dioxide. These ligninolytic enzymes, such as lignin peroxidase, manganese peroxidase and laccase, are capable of degrading a vast range of toxic, recalcitrant environmental pollutants and this makes the white-rot fungi strong candidates for the bioremediation of polluted soils and waters. The laccase enzyme alone has shown remediation potential in wastewaters such as beer production effluent, olive mill wastewater, alcohol distillery wastes, dye-containing wastewaters from the textile industry as well as wastewaters from the paper and pulp industry. It has been shown to be capable of remediating soils and waters polluted with chlorinated phenolic compounds, polyaromatic hydrocarbons, nitrosubstituted compounds and fungicides, herbicides and insecticides.
- Full Text:
- Date Issued: 2008
- Authors: Strong, Peter James
- Date: 2008
- Subjects: Fungal remediation Distilleries -- Waste disposal Wine and wine making -- Waste disposal Bioremediation Laccase Enzymes -- Biotechnology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3932 , http://hdl.handle.net/10962/d1003991
- Description: In this study white-rot fungi were investigated for their efficiency at distillery wastewater remediation and the production of laccase as a valuable by-product. Distillery wastewaters are high in organic load and low in pH. The presence of phenolic compounds can lead to extremely colour-rich wastewaters and can be toxic to microorganisms. The presence of the inorganic ions may also affect biological treatment. White-rot fungi are unique among eukaryotic or prokaryotic microbes in possessing powerful oxidative enzyme systems that can degrade lignin to carbon dioxide. These ligninolytic enzymes, such as lignin peroxidase, manganese peroxidase and laccase, are capable of degrading a vast range of toxic, recalcitrant environmental pollutants and this makes the white-rot fungi strong candidates for the bioremediation of polluted soils and waters. The laccase enzyme alone has shown remediation potential in wastewaters such as beer production effluent, olive mill wastewater, alcohol distillery wastes, dye-containing wastewaters from the textile industry as well as wastewaters from the paper and pulp industry. It has been shown to be capable of remediating soils and waters polluted with chlorinated phenolic compounds, polyaromatic hydrocarbons, nitrosubstituted compounds and fungicides, herbicides and insecticides.
- Full Text:
- Date Issued: 2008
Silver plate photograph of Dr. Brigalia Bam and Bishop Phillips
- Date: 2022 , 2022-10-03
- Subjects: Bam, Brigalia
- Language: English
- Type: photograph , realia
- Identifier: http://hdl.handle.net/10948/56712 , vital:57143
- Description: Silver photo plate of Dr. Brigalia Bam and Bishop Phillips. The plate was awarded to Dr. Brigalia Bam from Bishop Phillips at the 6th Annual B.R.P. Peace Lecture. , Donated/gifted to Nelson Mandela University Archives , Forms part of: Brigalia Bam collection
- Full Text: false
- Date Issued: 2022
- Date: 2022 , 2022-10-03
- Subjects: Bam, Brigalia
- Language: English
- Type: photograph , realia
- Identifier: http://hdl.handle.net/10948/56712 , vital:57143
- Description: Silver photo plate of Dr. Brigalia Bam and Bishop Phillips. The plate was awarded to Dr. Brigalia Bam from Bishop Phillips at the 6th Annual B.R.P. Peace Lecture. , Donated/gifted to Nelson Mandela University Archives , Forms part of: Brigalia Bam collection
- Full Text: false
- Date Issued: 2022
Condolence letter to Sheila Burnett from Brian Hill
- Type: Image
- Identifier: http://hdl.handle.net/10962/17347 , vital:22239 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0025
- Full Text:
- Type: Image
- Identifier: http://hdl.handle.net/10962/17347 , vital:22239 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0025
- Full Text:
Condolence letter to Sheila Burnett from Calivn1
- Type: Image
- Identifier: http://hdl.handle.net/10962/17443 , vital:22249 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0028
- Full Text:
- Type: Image
- Identifier: http://hdl.handle.net/10962/17443 , vital:22249 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , PIC/MS 20 0028
- Full Text:
Nathaniel James Merriman, Archdeacon and Bishop 1849-1882 : a study in church life and government
- Authors: Goedhals, Mary Mandeville
- Date: 1982
- Subjects: Merriman, Nathaniel James, 1809-1881
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2590 , http://hdl.handle.net/10962/d1007194
- Full Text:
- Date Issued: 1982
- Authors: Goedhals, Mary Mandeville
- Date: 1982
- Subjects: Merriman, Nathaniel James, 1809-1881
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2590 , http://hdl.handle.net/10962/d1007194
- Full Text:
- Date Issued: 1982
Synthesis, characterization, and biological studies of pyrazolone Schiff bases and their transition metal complexes
- Authors: Idemudia, Omoruyi Gold
- Date: 2014
- Language: English
- Type: Thesis , Doctoral , PhD (Chemistry)
- Identifier: vital:11340 , http://hdl.handle.net/10353/d1016068
- Description: Some new acylpyrazolone Schiff bases have been synthesized from the condensation reaction of two acylpyrazolone diketone precursors with phenylhydrazine, 2,4-dinitrophenylhydrazine and sulfanilamide. They have been fully characterized by elemental analysis and spectroscopic techniques (IR,1H and 13C NMR, and mass-spectra). The single crystal structure of the benzoyl derivative acylpyrazolone Schiff bases have been obtained and analyzed by X-ray crystallography technique. Solid state X-ray diffraction revealed a keto tautomer Schiff base in solid state. Mn(II), Co(II), Ni(II) and Cu(II) complexes with the Schiff bases have been synthesized and characterized by elemental analysis, IR and UV-VIS spectroscopy, magnetic susceptibility measurements, and thermal studies (TGA and DTG). An octahedral geometry around the transition metal ion, consisting of two bidentate Schiff base ligands bonding through the azometine nitrogen and ketonic oxygen have been proposed based on careful interpretation of available analytical and spectroscopic characterization results. Two water molecules as ligands complete the octahedral geometry in all cases. Using the invitro disc diffusion method for screening synthesized compounds against selected gram positive and gram negative bacterial at 40 mg/mL, and the DPPH free radical scavenging methods at 0.50, 0.25 and 0.13 mg/mL, the synthesized Schiff base and metal complexes showed varying biological activities. 4-benzoyl-3-methyl-1-phenyl-2-pyrazolin-5-one sul29 fanilamide showed more activity generally, exhibiting a broad spectrum activity against all selected bacterial in some cases. Mn(II), Co(II) and Ni(II) complexes of sulfanilamide Schiff base with the acetylpyrazolone derivative 4-acetyl-3-methyl-1-phenyl-2-pyrazolin-5-one sulfanilamide, exhibited a stronger and very good DPPH radical scavenging activity as good as ascorbic acid on comparing, but not with Cu(II). As such they could be important antitumour candidates.
- Full Text:
- Date Issued: 2014
- Authors: Idemudia, Omoruyi Gold
- Date: 2014
- Language: English
- Type: Thesis , Doctoral , PhD (Chemistry)
- Identifier: vital:11340 , http://hdl.handle.net/10353/d1016068
- Description: Some new acylpyrazolone Schiff bases have been synthesized from the condensation reaction of two acylpyrazolone diketone precursors with phenylhydrazine, 2,4-dinitrophenylhydrazine and sulfanilamide. They have been fully characterized by elemental analysis and spectroscopic techniques (IR,1H and 13C NMR, and mass-spectra). The single crystal structure of the benzoyl derivative acylpyrazolone Schiff bases have been obtained and analyzed by X-ray crystallography technique. Solid state X-ray diffraction revealed a keto tautomer Schiff base in solid state. Mn(II), Co(II), Ni(II) and Cu(II) complexes with the Schiff bases have been synthesized and characterized by elemental analysis, IR and UV-VIS spectroscopy, magnetic susceptibility measurements, and thermal studies (TGA and DTG). An octahedral geometry around the transition metal ion, consisting of two bidentate Schiff base ligands bonding through the azometine nitrogen and ketonic oxygen have been proposed based on careful interpretation of available analytical and spectroscopic characterization results. Two water molecules as ligands complete the octahedral geometry in all cases. Using the invitro disc diffusion method for screening synthesized compounds against selected gram positive and gram negative bacterial at 40 mg/mL, and the DPPH free radical scavenging methods at 0.50, 0.25 and 0.13 mg/mL, the synthesized Schiff base and metal complexes showed varying biological activities. 4-benzoyl-3-methyl-1-phenyl-2-pyrazolin-5-one sul29 fanilamide showed more activity generally, exhibiting a broad spectrum activity against all selected bacterial in some cases. Mn(II), Co(II) and Ni(II) complexes of sulfanilamide Schiff base with the acetylpyrazolone derivative 4-acetyl-3-methyl-1-phenyl-2-pyrazolin-5-one sulfanilamide, exhibited a stronger and very good DPPH radical scavenging activity as good as ascorbic acid on comparing, but not with Cu(II). As such they could be important antitumour candidates.
- Full Text:
- Date Issued: 2014
Condolence letter to Sheila Burnett from Bishop Ken Hallows
- Date: 1994-09-15
- Subjects: Burnett, Bill Bendyshe -- 1917-1994 Condolence notes Burnett family
- Type: Image
- Identifier: http://hdl.handle.net/10962/38898 , vital:24833 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , MS 20 0092
- Description: This collection contains the letters of condolences, addressed to Sheila Burnett on the death of her husband Bill Bendyshe Burnett, who died on the 23rd of August 1994.
- Full Text:
- Date Issued: 1994-09-15
- Date: 1994-09-15
- Subjects: Burnett, Bill Bendyshe -- 1917-1994 Condolence notes Burnett family
- Type: Image
- Identifier: http://hdl.handle.net/10962/38898 , vital:24833 , This image is held at the Cory Library for Humanities Research at Rhodes University. For further information contact cory@ru.ac.za. The digitisation of this image was made possible through a generous grant received from the Andrew W. Mellon Foundation 2014-2017. , MS 20 0092
- Description: This collection contains the letters of condolences, addressed to Sheila Burnett on the death of her husband Bill Bendyshe Burnett, who died on the 23rd of August 1994.
- Full Text:
- Date Issued: 1994-09-15
Bishop Makgoba function, 23 February 2008
- Authors: Badat, Saleem
- Date: 2014-09-29
- Subjects: Makgoba, Thabo (1960- )
- Language: English
- Type: Text
- Identifier: vital:7643 , http://hdl.handle.net/10962/d1014331
- Description: Address at the Bishop Makgoba function, 23 February 2008, Rhodes University, Grahamstown
- Full Text:
- Authors: Badat, Saleem
- Date: 2014-09-29
- Subjects: Makgoba, Thabo (1960- )
- Language: English
- Type: Text
- Identifier: vital:7643 , http://hdl.handle.net/10962/d1014331
- Description: Address at the Bishop Makgoba function, 23 February 2008, Rhodes University, Grahamstown
- Full Text:
Hanover, King William's Town, Ciskei
- Authors: Skead, C J (Cuthbert John)
- Date: 195u
- Subjects: Red Bishops -- South Africa -- Eastern Cape , Birds -- South Africa -- Eastern Cape
- Type: still image
- Identifier: vital:12369 , http://hdl.handle.net/10962/d1013776
- Description: Dense Typha beds surrounding a vlei, used annually as a nesting site by Red Bishop birds.
- Full Text: false
- Date Issued: 195u
- Authors: Skead, C J (Cuthbert John)
- Date: 195u
- Subjects: Red Bishops -- South Africa -- Eastern Cape , Birds -- South Africa -- Eastern Cape
- Type: still image
- Identifier: vital:12369 , http://hdl.handle.net/10962/d1013776
- Description: Dense Typha beds surrounding a vlei, used annually as a nesting site by Red Bishop birds.
- Full Text: false
- Date Issued: 195u