In silico analysis of human Hsp90 for the identification of novel anti-cancer drug target sites and natural compound inhibitors
- Authors: Penkler, David Lawrence
- Date: 2015
- Subjects: Heat shock proteins , Cancer -- Treatment , Molecular chaperones , Homeostasis , Carcinogenesis , Chemotherapy , Ligand binding (Biochemistry) , Protein-protein interactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4162 , http://hdl.handle.net/10962/d1018938
- Description: The 90-KDa heat shock protein (Hsp90) is part of the molecular chaperone family, and as such it is involved in the regulation of protein homeostasis within cells. Specifically, Hsp90 aids in the folding of nascent proteins and re-folding of denatured proteins. It also plays an important role in the prevention of protein aggregation. Hsp90’s functionality is attributed to its several staged, multi-conformational ATPase cycle, in which associated client proteins are bound and released. Hsp90 is known to be associated with a wide array of client proteins, some of which are thought to be involved in multiple oncogenic processes. Indeed Hsp90 is known to be directly involved in perpetuating the stability and function of multiple mutated, chimeric and over-expressed signalling proteins that are known to promote the growth and survival of cancer cells. Hsp90 inhibitors are thus thought to be promising therapeutic agents for cancer treatment. A lack of a 3D structure of human Hsp90 however has restricted Hsp90 inhibitor development in large to in vivo investigations. This study, aims to investigate and calculate hypothetical homology models of the full human Hsp90 protein, and to probe these structural models for novel drug target sites using several in silico techniques. A multi-template homology modelling methodology was developed and in conjunction with protein-protein docking techniques, two functionally important human Hsp90 structural models were calculated; the nucleotide free “v-like” open and nucleotide bound closed conformations. Based on the conservation of ligand binding, virtual screening experiments conducted on both models using 316 natural compounds indigenous to South Africa, revealed three novel putative target sites. Two binding pockets in close association with important Hsp90-Hop interaction residues and a single binding pocket on the dimerization interface in the C-terminal domain. Targeted molecular docking experiments at these sites revealed two compounds (721395-11-5 and 264624-39-7) as putative inhibitors, both showing strong binding affinities for at least one of the three investigated target sites. Furthermore both compounds were found to only violate one Lipinski’s rules, suggesting their potential as candidates for further drug development. The combined work described here provides a putative platform for the development of next generation inhibitors of human Hsp90.
- Full Text:
- Date Issued: 2015
An investigation of the potential anti-diabetic (insulinomimetic) activity of anti-oxidant compounds derived from Sargassum heterophyllum
- Authors: Nyambe, Mutenta Nsokolo
- Date: 2014
- Subjects: Sargassum , Diabetes -- Chemotherapy , Diabetes -- Africa , Antioxidants -- Therapeutic use , Marine algae , Endemic plants -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3874 , http://hdl.handle.net/10962/d1021020
- Description: In Africa, non-communicable diseases such as diabetes mellitus have been generally neglected. This problem has worsened over the years owing to continuous threats from infectious diseases such as HIV/AIDS, tuberculosis and malaria. Despite this, statistics have shown that by 2030, the African region will have the highest proportional increase in diabetes prevalence. Over 80% of all diabetic deaths occur in developing countries probably not only due to poor equity of access to medication but also due to limited efficacy and side effects associated with the commonly available anti-diabetic agents. Therefore, this creates the desperate need for the development of new anti-diabetic agents that are more efficacious and can be sourced from within the continent. With oxidative stress as a suggested mechanism underlying the cause of diabetes mellitus and diabetic complications, the discovery of natural anti-oxidants that prevent free radical mediated damage is important for developing new treatment strategies. Marine algae have been identified as good sources for natural anti-oxidants. Unfortunately, very few studies have embarked on the discovery of marine-derived anti-oxidant compounds with potential anti-diabetic activity. In this project, we investigated the potential anti-oxidant activity of the South African endemic algae Stypopodium multipartitum, Dictyopterus ligulata, Cystophora fibriosa, Bifurcariopsis capensis, Sargassum sp. and Sargassum heterophyllum. From these studies, Sargassum heterophyllum yielded prenylated compounds, the main compound being sargahydroquinoic acid (3.6) and the carotenoid metabolite fucoxanthin (3.8), which are in part responsible for the radical scavenging activity of the crude extract. Sargahydroquinoic acid (3.6) and fucoxanthin (3.8) also exhibited significant anti-inflammatory activity. Sargaquinoic acid (3.1), sargachromenoic acid (3.9) and sarganaphthoquinoic acid (3.10) were then semi-synthesized from sargahydroquinoic acid (3.6) and their in-vitro cytotoxicity profiles evaluated using Chang Liver, HT-29, Caco-2 and 3T3-L1 cell lines prior to antidiabetic testing. From the semi-synthetic derivatives, sargachromenoic acid (3.9) exhibited the most potent anti-oxidant activity (IC₅₀ = 6.99 μg/mL). After the evaluation of antidiabetic activity using 3T3-L1 preadipocyte differentiation, sarganaphthoquinoic acid (3.10) showed the most potent insulinomimetic activity at 1.19 μM by inducing a PPARγ response similar to that of rosiglitazone at 1 μM.
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- Date Issued: 2014
Biology and ecology of largemouth bass Micropterus salmoides in two temperate South African impoundments
- Authors: Taylor, Geraldine Claire
- Date: 2013 , 2013-03-19
- Subjects: Largemouth bass -- Ecology -- South Africa -- Eastern Cape , Largemouth bass -- Behavior -- South Africa -- Eastern Cape , Largemouth bass -- Growth -- South Africa -- Eastern Cape , Largemouth bass -- Reproduction -- South Africa -- Eastern Cape , Largemouth bass -- Food -- South Africa -- Eastern Cape , Largemouth bass -- Age determination -- South Africa -- Eastern Cape , Introduced fishes -- South Africa -- Eastern Cape , Fish populations -- South Africa -- Eastern Cape , Otoliths , Largemouth bass -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5181 , http://hdl.handle.net/10962/d1001668 , Largemouth bass -- Ecology -- South Africa -- Eastern Cape , Largemouth bass -- Behavior -- South Africa -- Eastern Cape , Largemouth bass -- Growth -- South Africa -- Eastern Cape , Largemouth bass -- Reproduction -- South Africa -- Eastern Cape , Largemouth bass -- Food -- South Africa -- Eastern Cape , Largemouth bass -- Age determination -- South Africa -- Eastern Cape , Introduced fishes -- South Africa -- Eastern Cape , Fish populations -- South Africa -- Eastern Cape , Otoliths
- Description: Globally largemouth bass Micropterus salmoides is one of the most widely introduced game fish species which has now become invasive in many countries. Well researched in its native North America, there are few studies on this species in its introduced range. This study aims to improve the understanding of the biology and ecology of M. salmoides in temperate southern Africa, where it threatens native biota and supports a popular recreational fishery. This aim was addressed by assessing the age, growth, maturity, reproductive seasonality, feeding, mortality and movement, of two M. salmoides populations from Wriggleswade (1000 ha, 723 m amsl, 32º35'S; 27º33'E) and Mankazana (35 ha, 66 m amsl, 33º09'S; 26º57'E) Dams in the Eastern Cape of South Africa. The most suitable structure for ageing M. salmoides was determined by comparing the accuracy and precision of otoliths and scales. Scales tended to underestimate the age of fish older than five years. Sectioned sagittal otoliths were the more precise structures for ageing (otoliths CV = 15.8 vs. scales CV = 21.9). The periodicity of growth zone formation was validated as annual for otoliths using both edge analysis (EA), and mark recapture of chemically tagged fish (MRCT). EA indicated one annual peak in the frequency of opaque margins between September and January using a periodic logistic regression and a binomial model linked with a von Mises distribution for circular data. MRCT showed the linear relationship between time at liberty and number of growth zones distal to the fluorescent band was not significantly different from one (slope = 0.89). Reproduction was similar to that in native and non-native populations with fish reaching age at 50% maturity at ca. two years, and length at 50% maturity at 259-290 mm FL depending on growth rate. Spawning season occurred in the spring months of August to October. The Wriggleswade Dam population reached similar ages (14 yrs) to populations in temperate North America. Growth was described using the von Bertalanffy growth equations of (Lt = 420(1-ᵉ⁻°·³³⁽ᵗ⁺°·²¹⁾) mm FL in Wriggleswade and (Lt = 641(1-ᵉ⁻°·²²⁽ᵗ⁺°·⁷⁶⁾) mm FL in Mankazana. Growth performance of both populations, described using the phi prime index, seemed to be correlated with temperature and the Wriggleswade Dam population (Φ’ = 2.8) grew similarly to those native temperate North American populations and the non-native populations of Japan and Italy. The Mankazana population had a higher growth performance (Φ’ = 2.9) compared to Wriggleswade and growth was comparable to other nonnative African populations. Both populations utilised all available food resources, with the Mankazana population being in better condition than the Wriggleswade population as a result of a more diverse diet, highly abundant food sources throughout the year, and potentially the adoption of a more conservative ambush feeding strategy. The Wriggleswade population, which was utilised by competitive anglers, showed low mortality rates (Z = 0.43 yr⁻¹), and translocated fish dispersed from the common release site, travelling an average distance of 4km over the study time of 494 days. These results indicated that M. salmoides are successful in these environments, growing at expected temperature dependant rates, maturing at two years, using all available food groups, and suffering from low mortality. It is therefore likely that they will persist in South Africa and establish where introduced.
- Full Text:
- Date Issued: 2013
Log analysis aided by latent semantic mapping
- Authors: Buys, Stephanus
- Date: 2013 , 2013-04-14
- Subjects: Latent semantic indexing , Data mining , Computer networks -- Security measures , Computer hackers , Computer security
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4575 , http://hdl.handle.net/10962/d1002963 , Latent semantic indexing , Data mining , Computer networks -- Security measures , Computer hackers , Computer security
- Description: In an age of zero-day exploits and increased on-line attacks on computing infrastructure, operational security practitioners are becoming increasingly aware of the value of the information captured in log events. Analysis of these events is critical during incident response, forensic investigations related to network breaches, hacking attacks and data leaks. Such analysis has led to the discipline of Security Event Analysis, also known as Log Analysis. There are several challenges when dealing with events, foremost being the increased volumes at which events are often generated and stored. Furthermore, events are often captured as unstructured data, with very little consistency in the formats or contents of the events. In this environment, security analysts and implementers of Log Management (LM) or Security Information and Event Management (SIEM) systems face the daunting task of identifying, classifying and disambiguating massive volumes of events in order for security analysis and automation to proceed. Latent Semantic Mapping (LSM) is a proven paradigm shown to be an effective method of, among other things, enabling word clustering, document clustering, topic clustering and semantic inference. This research is an investigation into the practical application of LSM in the discipline of Security Event Analysis, showing the value of using LSM to assist practitioners in identifying types of events, classifying events as belonging to certain sources or technologies and disambiguating different events from each other. The culmination of this research presents adaptations to traditional natural language processing techniques that resulted in improved efficacy of LSM when dealing with Security Event Analysis. This research provides strong evidence supporting the wider adoption and use of LSM, as well as further investigation into Security Event Analysis assisted by LSM and other natural language or computer-learning processing techniques. , LaTeX with hyperref package , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2013
Water quality dynamics in an experimental serial-use raceway and its effects on growth of South African abalone, Haliotis midae
- Authors: Naylor, Matthew Aubrey
- Date: 2012
- Subjects: Haliotis midae -- South Africa , Abalone culture -- South Africa , Abalones -- Effect of water quality on , Abalones -- Nutrition -- South Africa , Abalones -- Feeding and feeds , Abalones -- Growth , Fish culture -- Water reuse
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5335 , http://hdl.handle.net/10962/d1005181 , Haliotis midae -- South Africa , Abalone culture -- South Africa , Abalones -- Effect of water quality on , Abalones -- Nutrition -- South Africa , Abalones -- Feeding and feeds , Abalones -- Growth , Fish culture -- Water reuse
- Description: An understanding of species specific water quality requirements is essential for efficient production of aquaculture products, an aspect not well documented for the land-based culture of the South African abalone, Haliotis midae. In order for the industry to remain competitive in international markets, efficient use of water supplies and the development of water reuse technology is needed. This study assessed the changes in water quality between tanks in a tiered serial-use raceway in relation to accumulated biomass and water flow and estimated the flow index (FI) (L h⁻¹ kg⁻¹) at which growth becomes significantly affected. The effect of dietary protein level, supplementation of pure oxygen and addition of sodium hydroxide (NaOH⁻) on water quality and fundamental production parameters in the serial-use raceways was also assessed. The serial-use raceways were used as a tool to create a range of water quality conditions at which the growth, feed conversion ratio (FCR) and condition factor (CF) of "cocktail" size (60 – 70 mm) H. midae could be monitored. The metabolic activity of the abalone resulted in a deterioration in water quality between tanks in series. pH (r² = 0.99; p < 0.001) and dissolved oxygen concentration (r² = 0.99; p < 0.001) were positively correlated with flow index (pH = 7.38 FI°·°² ; dissolved oxygen = 6.92 FI°·°⁴), while free ammonia nitrogen (FAN) (r² = 0.99, p < 0.001) and nitrite (NO²⁻ - N) (r² = 0.93, p < 0.001) were negatively correlated with flow index (FAN = 8.02 FI⁻°·⁷¹). Nitrite concentrations increased over time indicating colonisation of Nitrosomonas bacteria on the basket surfaces. A flow index of 7.2 – 9.0 L h⁻¹ kg⁻¹ was estimated as the minimum to avoid significant reductions in weight and shell length gain and increases in FCR values. Total ammonia nitrogen (TAN) and FAN concentrations were significantly correlated to dietary protein (P) (t = 6.63, p < 0.0001 and t = 6.41, p < 0.0001, respectively) and flow index (t = 5.42, p < 0.0001 and t = 3.9, p < 0.0002, respectively) and could be estimated using the models TAN = 9.73 P – 110.3 log (FI), and FAN = 0.132 P – 1.10 log (FI). Mean FAN concentrations were 67 and 41 % lower in tanks fed a diet containing 22 and 26 % protein respectively, when compared to tanks fed a 33 % protein diet. Supplementation with pure oxygen (103 ± 8 % saturation) improved shell length gain (t = 3.45, p = 0.026) in abalone exposed to high FAN (2.43 ± 1.1 μg L⁻¹) and low pH (7.6 ± 0.13), relative to a treatment with no oxygen supplementation (92 ± 6 % saturation). Addition of a sodium hydroxide solution resulted in elevated mean pH in treatment raceways when compared to control raceways. The increased pH resulted in significantly higher weight gain (g abalone⁻¹) (F₁·₁₂ = 4.51; p = 0.055) and shell length gain (mm abalone⁻¹) (F₁·₁₂ = 4.56; p = 0.054) at an α-error level of < 5.5 %. In two trials, weight gain and shell length gain were significantly correlated to pH (p < 0.001), and multiple regression of pH, dissolved oxygen and FAN consistently revealed pH to be the best predictor of growth. It is therefore suggested that decreasing pH is the first limiting water quality variable for abalone in serial-use raceways. As a decrease in water pH is linked to respiration by the abalone and subsequent increase in dissolved carbon dioxide (CO₂) concentration, future studies should examine the effects of CO₂ on H. midae metabolic rate, calcification rate and health. The results of this study will contribute toward our understanding of the specific water quality requirements for H. midae in commercial aquaculture systems, and influence the design and management procedures for abalone water reuse systems.
- Full Text:
- Date Issued: 2012
Removal and photocatalysis of 4-Nitrophenol using metallophthalocyanines
- Authors: Marais, Eloïse Ann
- Date: 2008
- Subjects: Photocatalysis , Catalysis , Electrochemistry , Nitrophenols , Phthalocyanines
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4343 , http://hdl.handle.net/10962/d1005005 , Photocatalysis , Catalysis , Electrochemistry , Nitrophenols , Phthalocyanines
- Description: Photodegradation of 4-nitrophenol (4-Np) in the presence of water-soluble zinc phthalocyanines and water-insoluble metallophthalocyanines is reported. The water-soluble phthalocyanines employed include zinc tetrasulphophthalocyanine (ZnPcS[subscript 4]), zinc octacarboxyphthalocyanine (ZnPc(COOH)[subscript 8]) and a sulphonated ZnPc containing a mixture of differently sulphonated derivatives (ZnPcS[subscript mix]), while the water-insoluble phthalocyanines used include unsubstituted magnesium (MgPc), zinc (ZnPc) and chloroaluminium (ClAlPc) phthalocyanine complexes and the ring-substituted zinc tetranitro (ZnPc(NO[subscript 2])[subscript 4]), zinc tetraamino (ZnPc(NH[subscript 2])[subscript 4]), zinc hexadecafluoro (ZnPcF[subscript 16]) and zinc hexadecachloro (ZnPcCl[subscript 16]) phthalocyanines. The most effective water-soluble photocatalyst is ZnPcS[subscript mix] in terms of the high quantum yield obtained for 4-Np degradation (Φ[subscript 4-Np]) as well as its photostability. While ZnPc(COOH)[subscript 8] has the highest Φ[subscript 4-Np] value relative to the other water-soluble complexes, it degrades readily during photocatalysis. The Φ[subscript 4-Np] values were closely related to the singlet oxygen quantum yields Φ[subscript Δ] and hence aggregation. The rate constants for the reaction with 4-Np were kr = 0.67 x 10[superscript 6] mol[superscript -1] dm[superscript 3] s[superscript -1] for ZnPcS[subscript mix] and 7.7 x 10[superscript 6] mol[superscript -1] dm[superscript 3] s[superscript -1] for ZnPc(COOH)[subscript 8]. ClAlPc is the most effective photocatalyst relative to the other heterogeneous photocatalysts for the phototransformation of 4-Np, with 89 ± 8.4 % degradation of 4-Np achieved after 100 min. The least effective catalysts were ZnPcCl[subscript 16] and MgPc. The final products of the photocatalysis of 4-Np in the presence of the homogeneous photocatalysts include 4-nitrocatechol and hydroquinone, while degradation of 4-Np in the presence of the heterogeneous photocatalysts resulted in fumaric acid and 4-nitrocatechol. ClAlPc was employed for the heterogeneous photocatalysis of the non-systemic insecticide, methyl paraoxon. Complete degradation of the pesticide was confirmed by the disappearance of the HPLC trace for methyl paraoxon after 100 min of irradiation with visible light. The removal of 4-Np from an aqueous medium using commercially available Amberlite[superscript ®] IRA-900 modified with metal phthalocyanines was also investigated. The metallophthalocyanines immobilised onto the surface of Amberlite[superscript ®] IRA-900 include Fe (FePcS[subscript 4]), Co (CoPcS[subscript 4]) and Ni (NiPcS[subscript 4]) tetrasulphophthalocyanines, and differently sulphonated phthalocyanine mixtures of Fe (FePcS[subscript mix]), Co (CoPcS[subscript mix]) and Ni (NiPcS[subscript mix]). Adsorption rates were fastest for the modified adsorbents at pH 9. Using the Langmuir-Hinshelwood kinetic model, the complexes showed the following order of 4-Np adsorption: CoPcS[subscript mix] > NiPcS[subscript 4] > NiPcS[subscript mix] > FePcS[subscript 4] > FePcS[subscript mix] > CoPcS[subscript 4]. The adsorbents were regenerated using dilute HNO[subscript 3], with 76 % (7.6 x 10[superscript -5] mol) of 4-Np recovered within 150 min.
- Full Text:
- Date Issued: 2008
Multiprotocol control of networked home entertainment devices
- Authors: Siebörger, David Robert
- Date: 2004
- Subjects: Home entertainment systems , Home video systems
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4642 , http://hdl.handle.net/10962/d1006585 , Home entertainment systems , Home video systems
- Description: Networks will soon connect a wide range of computing devices within the home. Amongst those devices will be home entertainment devices. Remote control over the network will be a key application for networked entertainment devices, and requires a protocol for communication understood by both controller and controlled device. Devices capable of communication using multiple control protocols will be compatible with a wider range of controllers than those which implement only one control protocol. This work examines home networks and a number of control protocols. The implementations of the UPnP and AV/C protocols for an AV receiver are described. The issues involved in the concurrent use of multiple control protocols to control a device are considered, possible methods of concurrent control discussed, and a solution which simulates virtual copies of the device is implemented and tested.
- Full Text:
- Date Issued: 2004
Thermal and photostability studies of furosemide and its cyclodextrin mixtures
- Authors: Melane, Babalwa Blossom
- Date: 2002 , 2013-05-16
- Subjects: Furosemide , Furosemide -- Stability
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4440 , http://hdl.handle.net/10962/d1007625 , Furosemide , Furosemide -- Stability
- Description: Furosemide (Lasix®), abbreviated as FR and also known as frusemide, is a drug used for renal problems and treatment of cardiac edema. Various polymorphic forms of furosemide, dependent upon the method of preparation and thermal treatment, have been reported. The main thermal decomposition product of furosemide has been identified as saluamine. The dissolution properties of furosemide have also been reported to be improved by complexation with beta-cyclodextrin. Photostabilities of the different crystal forms have been studied. Differential scanning calorimetry (DSC) and thermogravimetry (TG) have been used to examine the thermal behaviour of furosemide itself and of its physical and kneaded mixtures with betacyclodextrin (BCD) and gamma-cyclodextrin (GCD). There is strong evidence from DSC that complex formation between FR and GCD occurs. This is supported by IR and XRD data. Decreases in the intensity and broadening of the characteristic carbonyl (1660 cm'l) and amine (1588 cm⁻¹) bands in the kneaded mixture, compared to the physical mixture, were observed with IR. X-ray diffraction results for the 1:3 molar ratio FR/GCD kneaded mixture showed a halo diffraction pattern characteristic. of an amorphous solid and did not resemble patterns from the drug, or the gamma, cyclodextrin, or the physical mixture. Photostability studies have been conducted on solid furosemide and its mixtures with GCD or BCD. An HPLC method was developed to determine the amount of drug remaining after exposure and the presence of any degradants. Results indicated that about 10% degradation of the drug occurred during exposure for 16 hours at 550 W/m², with the appearance of polar degradants. Although IR and DSC results for the 1:3 molar ratio FR/GCD kneaded mixture showed a probable strong interaction between FR and GCD, the photostability of FR was decreased. The 1 :3 molar ratio FR/BCD kneaded mixture showed less photo-degradation than the 1:3 molar ratio FR/GCD mixture under similar conditions, suggesting that inclusion of the drug molecule (FR) is different in the two cyclodextrins.
- Full Text:
- Date Issued: 2002
Extracellular digestion in two intertidal mussels and the role played by their gut bacteria
- Authors: Simon, Carol Anne
- Date: 1997
- Subjects: Perna -- Digestive organs , Mussels -- Digestive organs , Spirochaeta
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5692 , http://hdl.handle.net/10962/d1005378 , Perna -- Digestive organs , Mussels -- Digestive organs , Spirochaeta
- Description: The intertidal mussels. Perna perna and Choromytilus meridionalis co-occur on the southern coast of South Africa. Mussels ingest mixtures of bacteria. phytoplankton. zooplankton and detritus. with proportions varying according to availability. These bivalves filter similar-sized particles. which might result in interspecific competition. Carbohydrate-digesting enzymes of the mussels and their enteric bacteria. and bacteriolytic enzymes of the mussels were therefore examined to elucidate feeding ecology in these animals at an enzymatic level. Style enzymes of both species digested the storage carbohydrates amylose glycogen and laminarin, and the structural carbohydrate carboxymethyl cellulose (CMC). Differential rates of digestion of these carbohydrates suggests that Perna perna relies more on plankton (and possibly bacteria) than on detritus for food while Choromytilus meridionalis relies equally on all components of the seston. There may therefore be some degree of resource partitioning of the seston. The styles of P.perna had a lower specific enzyme activity. but higher protein content than those of C.meridionalis. P.perna could therefore release more glucose from a given concentration of substrate than C.meridionalis. The gut contents and tissue were examined microscopically to determine where the bacterial colonisation sites were. Bacteria were associated primarily with the gut contents but not the gut walls. of both species. The styles housed spirochaete bacteria (Crislispira sp), Perna perna housed large numbers of one species. while Choromytilus meridionalis had lower numbers of two species. Levels of infection differed between species and localities. Enteric (but not style) bacteria of Perna perna and Choromytilus meridionalis always digested the same carbohydrates as the mussels as well as the structural carbohydrates mannan and fucoidan. Activity was erratic on the structural compounds, carageenin and xylan, and absent on alginic acid or inulin. Activity on the storage carbohydrates by enteric bacteria from C.meridionalis was higher than by those from P.perna. This is probably related to the larger bacterial populations housed by C.meridionalis than by P.perna. Bacteriolytic activity by the digestive enzymes of Pema perna was higher than for Choromytilus. In P.perna it was due to a combination of different enzymes one of which is a true lysozyme. C.meridionalis did not produce a true lysozyme. Enzymes produced by the mussels and their enteric bacteria allow the mussels to utilise all components of the seston. Low endogenous enzyme activity by Choromytilus meridionalis, coupled with the high activity by its enteric bacteria, suggests that they rely more on bacterial activity to meet their dietary requirements than does Perna perna. The ability of enteric bacteria to digest carbohydrates which the mussels cannot indicates that the bacteria are endosymbiotic, although the sporadic nature of activity of some of the enzymes, and the fact that bacteria are associated with the gut contents, indicates that the relationship is only incidental.
- Full Text:
- Date Issued: 1997
The P.R.O. expert system shell
- Authors: Bradshaw, John
- Date: 1987 , 2013-04-03
- Subjects: Expert systems (Computer science)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4617 , http://hdl.handle.net/10962/d1006302 , Expert systems (Computer science)
- Description: This thesis reports the research which led to the development of the P.R .O. Expert System Shell. The P.R.O . System is primarily, though not exclusively , designed for use in ecological domains. In the light of two specific expert systems, The RCS (River Conservation Status) and the Aquaculture Systems, which were developed as part of this research, a number of areas of importance have been identified. The most significant of these is the need to handle uncertainty effectively. The style of knowledge representation to be implemented also plays an important role. After consulting the relevant literature and the available microcomputer expert system shells, a number of ideas have been included in the P.R.O. System. The P.R.O . System is a backward chaining, production system based expert system shell. It embodies a simple but effective method of handling uncertainty. An important feature of this method is that it takes cognizance of the different relative importances of the conditions which need to be satisfied before a conclusion can be reached. The knowledge base consists of more than rules and questions. It also contains meta-knowledge, which is used by the inference engine. The P.R.O. System has been designed to be of practical use. Its strongest recommendations are therefore, that the two non-trivial systems which have been implemented in it, have been accepted by the experts and their peers as systems which produce good, accurate answers . , KMBT_363 , Adobe Acrobat 9.53 Paper Capture Plug-in
- Full Text:
- Date Issued: 1987