Modelling annual evapotranspiration in a semi-arid, African savanna: functional convergence theory, MODIS LAI and the Penman–Monteith equation
- Palmer, Anthony R, Weideman, Craig I, Finca, Andiswa, Everson, Colin S, Hanan, Niall P, Ellery, William F N
- Authors: Palmer, Anthony R , Weideman, Craig I , Finca, Andiswa , Everson, Colin S , Hanan, Niall P , Ellery, William F N
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144387 , vital:38341 , DOI: 10.2989/10220119.2014.931305
- Description: Accurately measuring evapotranspiration (ET) is essential if we are to derive reasonable estimates of production and water use for semi-arid savannas. Estimates of ET are also important in defining the health of an ecosystem and the quantity of water used by the vegetation when preparing a catchment-scale water balance. We derived ET0 from an automatic weather station 30 km west of Skukuza, Kruger National Park, South Africa using the Penman– Monteith equation, and then used the MODIS LAI to inform the model of canopy phenological dynamics. This result was compared with 173 days of ET measurements from the eddy covariance (ETec) system near Skukuza in 2007 as well as from the ET recorded by a large-aperture scintillometer at the same site in 2005. The model compared favourably with both sets of measured data and, when used independently of the eddy covariance data, ETMODIS predicted an annual ET of 378 mm in 2007 for the semi-arid savanna around the Skukuza flux site.
- Full Text:
- Date Issued: 2014
- Authors: Palmer, Anthony R , Weideman, Craig I , Finca, Andiswa , Everson, Colin S , Hanan, Niall P , Ellery, William F N
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144387 , vital:38341 , DOI: 10.2989/10220119.2014.931305
- Description: Accurately measuring evapotranspiration (ET) is essential if we are to derive reasonable estimates of production and water use for semi-arid savannas. Estimates of ET are also important in defining the health of an ecosystem and the quantity of water used by the vegetation when preparing a catchment-scale water balance. We derived ET0 from an automatic weather station 30 km west of Skukuza, Kruger National Park, South Africa using the Penman– Monteith equation, and then used the MODIS LAI to inform the model of canopy phenological dynamics. This result was compared with 173 days of ET measurements from the eddy covariance (ETec) system near Skukuza in 2007 as well as from the ET recorded by a large-aperture scintillometer at the same site in 2005. The model compared favourably with both sets of measured data and, when used independently of the eddy covariance data, ETMODIS predicted an annual ET of 378 mm in 2007 for the semi-arid savanna around the Skukuza flux site.
- Full Text:
- Date Issued: 2014
Simple, illustrated medicines information improves ARV knowledge and patient self-efficacy in limited literacy South African HIV patients:
- Dowse, Roslind, Barford, Kirsty-Lee, Browne, Sara H
- Authors: Dowse, Roslind , Barford, Kirsty-Lee , Browne, Sara H
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156698 , vital:40039 , DOI: 10.1080/09540121.2014.931559
- Description: Few studies have investigated antiretroviral (ARV) knowledge and self-efficacy in limited literacy patients. Using a randomized controlled study design, we investigated the influence of a simple pre-tested patient information leaflet (PIL) containing both text and illustrations on HIV- and ARV-related knowledge and on self-efficacy over six months in a limited literacy African population. The recruited patients were randomly allocated to either control (standard care) or intervention group (standard care plus illustrated PIL). HIV and medicines-related knowledge was evaluated with a 22-question test at baseline, one, three, and six months. Self-efficacy was assessed using a modified version of the HIV Treatment Adherence Self-Efficacy Scale.
- Full Text:
- Date Issued: 2014
- Authors: Dowse, Roslind , Barford, Kirsty-Lee , Browne, Sara H
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156698 , vital:40039 , DOI: 10.1080/09540121.2014.931559
- Description: Few studies have investigated antiretroviral (ARV) knowledge and self-efficacy in limited literacy patients. Using a randomized controlled study design, we investigated the influence of a simple pre-tested patient information leaflet (PIL) containing both text and illustrations on HIV- and ARV-related knowledge and on self-efficacy over six months in a limited literacy African population. The recruited patients were randomly allocated to either control (standard care) or intervention group (standard care plus illustrated PIL). HIV and medicines-related knowledge was evaluated with a 22-question test at baseline, one, three, and six months. Self-efficacy was assessed using a modified version of the HIV Treatment Adherence Self-Efficacy Scale.
- Full Text:
- Date Issued: 2014
A high-level architecture for efficient packet trace analysis on gpu co-processors
- Nottingham, Alastair, Irwin, Barry V W
- Authors: Nottingham, Alastair , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429572 , vital:72623 , 10.1109/ISSA.2013.6641052
- Description: This paper proposes a high-level architecture to support efficient, massively parallel packet classification, filtering and analysis using commodity Graphics Processing Unit (GPU) hardware. The proposed architecture aims to provide a flexible and efficient parallel packet processing and analysis framework, supporting complex programmable filtering, data mining operations, statistical analysis functions and traffic visualisation, with minimal CPU overhead. In particular, this framework aims to provide a robust set of high-speed analysis functionality, in order to dramatically reduce the time required to process and analyse extremely large network traces. This architecture derives from initial research, which has shown GPU co-processors to be effective in accelerating packet classification to up to tera-bit speeds with minimal CPU overhead, far exceeding the bandwidth capacity between standard long term storage and the GPU device. This paper provides a high-level overview of the proposed architecture and its primary components, motivated by the results of prior research in the field.
- Full Text:
- Date Issued: 2013
- Authors: Nottingham, Alastair , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429572 , vital:72623 , 10.1109/ISSA.2013.6641052
- Description: This paper proposes a high-level architecture to support efficient, massively parallel packet classification, filtering and analysis using commodity Graphics Processing Unit (GPU) hardware. The proposed architecture aims to provide a flexible and efficient parallel packet processing and analysis framework, supporting complex programmable filtering, data mining operations, statistical analysis functions and traffic visualisation, with minimal CPU overhead. In particular, this framework aims to provide a robust set of high-speed analysis functionality, in order to dramatically reduce the time required to process and analyse extremely large network traces. This architecture derives from initial research, which has shown GPU co-processors to be effective in accelerating packet classification to up to tera-bit speeds with minimal CPU overhead, far exceeding the bandwidth capacity between standard long term storage and the GPU device. This paper provides a high-level overview of the proposed architecture and its primary components, motivated by the results of prior research in the field.
- Full Text:
- Date Issued: 2013
Automated classification of computer network attacks
- van Heerden, Renier, Leenen, Louise, Irwin, Barry V W
- Authors: van Heerden, Renier , Leenen, Louise , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429622 , vital:72627 , 10.1109/ICASTech.2013.6707510
- Description: In this paper we demonstrate how an automated reasoner, HermiT, is used to classify instances of computer network based attacks in conjunction with a network attack ontology. The ontology describes different types of network attacks through classes and inter-class relationships and has previously been implemented in the Protege ontology editor. Two significant recent instances of network based attacks are presented as individuals in the ontology and correctly classified by the automated reasoner according to the relevant types of attack scenarios depicted in the ontology. The two network attack instances are the Distributed Denial of Service attack on SpamHaus in 2013 and the theft of 42 million Rand ($6.7 million) from South African Postbank in 2012.
- Full Text:
- Date Issued: 2013
- Authors: van Heerden, Renier , Leenen, Louise , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429622 , vital:72627 , 10.1109/ICASTech.2013.6707510
- Description: In this paper we demonstrate how an automated reasoner, HermiT, is used to classify instances of computer network based attacks in conjunction with a network attack ontology. The ontology describes different types of network attacks through classes and inter-class relationships and has previously been implemented in the Protege ontology editor. Two significant recent instances of network based attacks are presented as individuals in the ontology and correctly classified by the automated reasoner according to the relevant types of attack scenarios depicted in the ontology. The two network attack instances are the Distributed Denial of Service attack on SpamHaus in 2013 and the theft of 42 million Rand ($6.7 million) from South African Postbank in 2012.
- Full Text:
- Date Issued: 2013
Classification of security operation centers
- Jacobs, Pierre, Arnab, Alapan, Irwin, Barry V W
- Authors: Jacobs, Pierre , Arnab, Alapan , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429635 , vital:72628 , 10.1109/ISSA.2013.6641054
- Description: Security Operation Centers (SOCs) are a necessary service for organisations that want to address compliance and threat management. While there are frameworks in existence that addresses the technology aspects of these services, a holistic framework addressing processes, staffing and technology currently do not exist. Additionally, it would be useful for organizations and constituents considering building, buying or selling these services to measure the effectiveness and maturity of the provided services. In this paper, we propose a classification and rating scheme for SOC services, evaluating both the capabilities and the maturity of the services offered.
- Full Text:
- Date Issued: 2013
- Authors: Jacobs, Pierre , Arnab, Alapan , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429635 , vital:72628 , 10.1109/ISSA.2013.6641054
- Description: Security Operation Centers (SOCs) are a necessary service for organisations that want to address compliance and threat management. While there are frameworks in existence that addresses the technology aspects of these services, a holistic framework addressing processes, staffing and technology currently do not exist. Additionally, it would be useful for organizations and constituents considering building, buying or selling these services to measure the effectiveness and maturity of the provided services. In this paper, we propose a classification and rating scheme for SOC services, evaluating both the capabilities and the maturity of the services offered.
- Full Text:
- Date Issued: 2013
Classification of security operation centers
- Jacobs, Pierre, Arnab, Alapan, Irwin, Barry V W
- Authors: Jacobs, Pierre , Arnab, Alapan , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429785 , vital:72639 , 10.1109/ISSA.2013.6641054
- Description: Security Operation Centers (SOCs) are a necessary service for organisations that want to address compliance and threat management. While there are frameworks in existence that addresses the technology aspects of these services, a holistic framework addressing processes, staffing and technology currently do not exist. Additionally, it would be useful for organizations and constituents considering building, buying or selling these services to measure the effectiveness and maturity of the provided services. In this paper, we propose a classification and rating scheme for SOC services, evaluating both the capabilities and the maturity of the services offered.
- Full Text:
- Date Issued: 2013
- Authors: Jacobs, Pierre , Arnab, Alapan , Irwin, Barry V W
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429785 , vital:72639 , 10.1109/ISSA.2013.6641054
- Description: Security Operation Centers (SOCs) are a necessary service for organisations that want to address compliance and threat management. While there are frameworks in existence that addresses the technology aspects of these services, a holistic framework addressing processes, staffing and technology currently do not exist. Additionally, it would be useful for organizations and constituents considering building, buying or selling these services to measure the effectiveness and maturity of the provided services. In this paper, we propose a classification and rating scheme for SOC services, evaluating both the capabilities and the maturity of the services offered.
- Full Text:
- Date Issued: 2013
Customising a BBVC for Asterisk VoIP Services
- Oyedele, Y, Terzoli, Alfredo, Mufeti, K
- Authors: Oyedele, Y , Terzoli, Alfredo , Mufeti, K
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430942 , vital:72730 , https://doi.org/10.1007/978-1-4614-3558-7_62
- Description: Browser-based Voice over Internet Protocol Clients (BBVC) are used to access pre-determined VoIP services from VoIP service providers through Internet connections. For nomadic users within an organisa-tion’s Intranet, connections are made to the Internet to utilise these BBVC. An Intranet with an Asterisk Private Branch Exchange (PBX) as a VoIP provider however can be linked with any form of VoIP client to improve service accessibility for its users. This study aims to find a BBVC that can be customised to provide such accessibility within an Intranet. The study revealed that three BBVC are compatible. One of three BBVC was selected for customisation to provide nomadic acces-sibility to Asterisk. The functionality of the customised BBVC depended on the web technologies used and the available VoIP services.
- Full Text:
- Date Issued: 2013
- Authors: Oyedele, Y , Terzoli, Alfredo , Mufeti, K
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430942 , vital:72730 , https://doi.org/10.1007/978-1-4614-3558-7_62
- Description: Browser-based Voice over Internet Protocol Clients (BBVC) are used to access pre-determined VoIP services from VoIP service providers through Internet connections. For nomadic users within an organisa-tion’s Intranet, connections are made to the Internet to utilise these BBVC. An Intranet with an Asterisk Private Branch Exchange (PBX) as a VoIP provider however can be linked with any form of VoIP client to improve service accessibility for its users. This study aims to find a BBVC that can be customised to provide such accessibility within an Intranet. The study revealed that three BBVC are compatible. One of three BBVC was selected for customisation to provide nomadic acces-sibility to Asterisk. The functionality of the customised BBVC depended on the web technologies used and the available VoIP services.
- Full Text:
- Date Issued: 2013
TeleWeaver: an innovative telecommunication platform for marginalized communities in Africa
- Dalvit, Lorenzo, Gumbo, Sibukelo, Ntshinga, Lindikaya, Terzoli, Alfredo, Hansen, Susan
- Authors: Dalvit, Lorenzo , Gumbo, Sibukelo , Ntshinga, Lindikaya , Terzoli, Alfredo , Hansen, Susan
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/431317 , vital:72763 , https://www.academic-bookshop.com/ourshop/prod_2659103-ECEG-2013-13th-European-Conference-on-eGovernment-Como-Italy-PRINT-version.html
- Description: Information and Communication Technologies for Development (ICT4D) is becoming an increasingly important and multi‐faceted area of research and software development. Particularly through provision via mobile devices, e‐services can potentially reach and improve the lives of millions of people living in marginalised areas. The efforts of many governments in sub‐Saharan Africa are frustrated by poor tele-communication infrastructure, lack of skills and unsustainable models of intervention. In this paper we describe the holistic solution offered by the TeleWeaver platform. The novel approach to the development of the software, the strong sense of social responsibility of the developers and the collaborative spirit that shaped the ecosystem of which Tele-Weaver is part, warrants the adoption of an innovative approach to its marketing and implementation. On the one hand, the project needs to provide returns on investment and generate profit for the key stake-holders (ie government at the local and national level, academia, indus-try and socio‐-entrepreneurs in the target community). On the other, it must benefit all members of the marginalised communities it is intended to serve as well as the global community of software developers. Tele-Weaver was developed in close collaboration with the community of Dwesa, a rural area on the Wild Cost of the Transkei regions in eastern South Africa.
- Full Text:
- Date Issued: 2013
- Authors: Dalvit, Lorenzo , Gumbo, Sibukelo , Ntshinga, Lindikaya , Terzoli, Alfredo , Hansen, Susan
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/431317 , vital:72763 , https://www.academic-bookshop.com/ourshop/prod_2659103-ECEG-2013-13th-European-Conference-on-eGovernment-Como-Italy-PRINT-version.html
- Description: Information and Communication Technologies for Development (ICT4D) is becoming an increasingly important and multi‐faceted area of research and software development. Particularly through provision via mobile devices, e‐services can potentially reach and improve the lives of millions of people living in marginalised areas. The efforts of many governments in sub‐Saharan Africa are frustrated by poor tele-communication infrastructure, lack of skills and unsustainable models of intervention. In this paper we describe the holistic solution offered by the TeleWeaver platform. The novel approach to the development of the software, the strong sense of social responsibility of the developers and the collaborative spirit that shaped the ecosystem of which Tele-Weaver is part, warrants the adoption of an innovative approach to its marketing and implementation. On the one hand, the project needs to provide returns on investment and generate profit for the key stake-holders (ie government at the local and national level, academia, indus-try and socio‐-entrepreneurs in the target community). On the other, it must benefit all members of the marginalised communities it is intended to serve as well as the global community of software developers. Tele-Weaver was developed in close collaboration with the community of Dwesa, a rural area on the Wild Cost of the Transkei regions in eastern South Africa.
- Full Text:
- Date Issued: 2013
The African coelacanth genome provides insights into tetrapod evolution:
- Amemiya, Chris T, Alföldi, Jessica, Lee, Alison P, Fan, Shaohua, Philippe, Herve´, MacCallum, Iain, Braasch, Ingo, Manousaki, Tereza, Schneider, Igor, Rohner, Nicolas, Organ, Chris, Chalopin, Domitille, Smith, Jeramiah J, Robinson, Mark, Dorrington, Rosemary A, Gerdol, Marco, Aken, Bronwen, Biscotti, Maria Assunta, Barucca, Marco, Baurain, Denis, Berlin, Aaron, Blatch, Gregory L, Buonocore, Francesco, Burmester, Thorsten, Campbell, Michael S, Canapa, Adriana, Cannon, John P, Christoffels, Alan, De Moro, Gianluca, Edkins, Adrienne L, Fan, Lin, Fausto, Anna Maria, Feiner, Nathalie, Forconi, Mariko, Gamieldien, Junaid, Gnerre, Sante, Gnirke, Andreas, Goldstone, Jared V, Haerty, Wilfried, Hahn, Mark E, Hesse, Uljana, Hoffmann, Steve, Johnson, Jeremy, Karchner, Sibel I, Kuraku, Shigehiro, Lara, Marcia, Levin, Joshua Z, Litman, Gary W, Mauceli, Evan, Miyake, Tsutomu, Mueller, M Gail, Nelson, David R, Nitsche, Anne, Olmo, Ettore, Ota, Tatsuya, Pallavicini, Alberto, Panji, Sumir, Picone, Barbara, Ponting, Chris P, Prohaska, Sonja J, Przybylski, Dariusz, Ratan Saha, Nil, Ravi, Vydianathan, Ribeiro, Filipe J, Sauka-Spengler, Tatjana, Scapigliati, Giuseppe, Searle, Stephen M J, Sharpe, Ted, Simakov, Oleg, Stadler, Peter F, Stegeman, John J, Sumiyama, Kenta, Tabbaa, Diana, Tafer, Hakim, Turner-Maier, Jason, van Heusden, Peter, White, Simon, Williams, Louise, Yandell, Mark, Brinkmann, Henner, Volff, Jean-Nicolas, Tabin, Clifford J, Shubin, Neil, Schartl, Manfred, Jaffe, David B, Postlethwait, John H, Venkatesh, Byrappa, Di Palma, Frederica, Lander, Eric S, Meyer, Axel, Lindblad-Toh, Kerstin
- Authors: Amemiya, Chris T , Alföldi, Jessica , Lee, Alison P , Fan, Shaohua , Philippe, Herve´ , MacCallum, Iain , Braasch, Ingo , Manousaki, Tereza , Schneider, Igor , Rohner, Nicolas , Organ, Chris , Chalopin, Domitille , Smith, Jeramiah J , Robinson, Mark , Dorrington, Rosemary A , Gerdol, Marco , Aken, Bronwen , Biscotti, Maria Assunta , Barucca, Marco , Baurain, Denis , Berlin, Aaron , Blatch, Gregory L , Buonocore, Francesco , Burmester, Thorsten , Campbell, Michael S , Canapa, Adriana , Cannon, John P , Christoffels, Alan , De Moro, Gianluca , Edkins, Adrienne L , Fan, Lin , Fausto, Anna Maria , Feiner, Nathalie , Forconi, Mariko , Gamieldien, Junaid , Gnerre, Sante , Gnirke, Andreas , Goldstone, Jared V , Haerty, Wilfried , Hahn, Mark E , Hesse, Uljana , Hoffmann, Steve , Johnson, Jeremy , Karchner, Sibel I , Kuraku, Shigehiro , Lara, Marcia , Levin, Joshua Z , Litman, Gary W , Mauceli, Evan , Miyake, Tsutomu , Mueller, M Gail , Nelson, David R , Nitsche, Anne , Olmo, Ettore , Ota, Tatsuya , Pallavicini, Alberto , Panji, Sumir , Picone, Barbara , Ponting, Chris P , Prohaska, Sonja J , Przybylski, Dariusz , Ratan Saha, Nil , Ravi, Vydianathan , Ribeiro, Filipe J , Sauka-Spengler, Tatjana , Scapigliati, Giuseppe , Searle, Stephen M J , Sharpe, Ted , Simakov, Oleg , Stadler, Peter F , Stegeman, John J , Sumiyama, Kenta , Tabbaa, Diana , Tafer, Hakim , Turner-Maier, Jason , van Heusden, Peter , White, Simon , Williams, Louise , Yandell, Mark , Brinkmann, Henner , Volff, Jean-Nicolas , Tabin, Clifford J , Shubin, Neil , Schartl, Manfred , Jaffe, David B , Postlethwait, John H , Venkatesh, Byrappa , Di Palma, Frederica , Lander, Eric S , Meyer, Axel , Lindblad-Toh, Kerstin
- Date: 2013
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165030 , vital:41202 , DOI: 10.1038/nature12027
- Description: The discovery of a living coelacanth specimen in 1938 was remarkable, as this lineage of lobe-finned fish was thought to have become extinct 70 million years ago. The modern coelacanth looks remarkably similar to many of its ancient relatives, and its evolutionary proximity to our own fish ancestors provides a glimpse of the fish that first walked on land. Here we report the genome sequence of the African coelacanth, Latimeria chalumnae. Through a phylogenomic analysis, we conclude that the lungfish, and not the coelacanth, is the closest living relative of tetrapods. Coelacanth protein-coding genes are significantly more slowly evolving than those of tetrapods, unlike other genomic features. Analyses of changes in genes and regulatory elements during the vertebrate adaptation to land highlight genes involved in immunity, nitrogen excretion and the development of fins, tail, ear, eye, brain and olfaction. Functional assays of enhancers involved in the fin-to-limb transition and in the emergence of extra-embryonic tissues show the importance of the coelacanth genome as a blueprint for understanding tetrapod evolution.
- Full Text:
- Date Issued: 2013
- Authors: Amemiya, Chris T , Alföldi, Jessica , Lee, Alison P , Fan, Shaohua , Philippe, Herve´ , MacCallum, Iain , Braasch, Ingo , Manousaki, Tereza , Schneider, Igor , Rohner, Nicolas , Organ, Chris , Chalopin, Domitille , Smith, Jeramiah J , Robinson, Mark , Dorrington, Rosemary A , Gerdol, Marco , Aken, Bronwen , Biscotti, Maria Assunta , Barucca, Marco , Baurain, Denis , Berlin, Aaron , Blatch, Gregory L , Buonocore, Francesco , Burmester, Thorsten , Campbell, Michael S , Canapa, Adriana , Cannon, John P , Christoffels, Alan , De Moro, Gianluca , Edkins, Adrienne L , Fan, Lin , Fausto, Anna Maria , Feiner, Nathalie , Forconi, Mariko , Gamieldien, Junaid , Gnerre, Sante , Gnirke, Andreas , Goldstone, Jared V , Haerty, Wilfried , Hahn, Mark E , Hesse, Uljana , Hoffmann, Steve , Johnson, Jeremy , Karchner, Sibel I , Kuraku, Shigehiro , Lara, Marcia , Levin, Joshua Z , Litman, Gary W , Mauceli, Evan , Miyake, Tsutomu , Mueller, M Gail , Nelson, David R , Nitsche, Anne , Olmo, Ettore , Ota, Tatsuya , Pallavicini, Alberto , Panji, Sumir , Picone, Barbara , Ponting, Chris P , Prohaska, Sonja J , Przybylski, Dariusz , Ratan Saha, Nil , Ravi, Vydianathan , Ribeiro, Filipe J , Sauka-Spengler, Tatjana , Scapigliati, Giuseppe , Searle, Stephen M J , Sharpe, Ted , Simakov, Oleg , Stadler, Peter F , Stegeman, John J , Sumiyama, Kenta , Tabbaa, Diana , Tafer, Hakim , Turner-Maier, Jason , van Heusden, Peter , White, Simon , Williams, Louise , Yandell, Mark , Brinkmann, Henner , Volff, Jean-Nicolas , Tabin, Clifford J , Shubin, Neil , Schartl, Manfred , Jaffe, David B , Postlethwait, John H , Venkatesh, Byrappa , Di Palma, Frederica , Lander, Eric S , Meyer, Axel , Lindblad-Toh, Kerstin
- Date: 2013
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165030 , vital:41202 , DOI: 10.1038/nature12027
- Description: The discovery of a living coelacanth specimen in 1938 was remarkable, as this lineage of lobe-finned fish was thought to have become extinct 70 million years ago. The modern coelacanth looks remarkably similar to many of its ancient relatives, and its evolutionary proximity to our own fish ancestors provides a glimpse of the fish that first walked on land. Here we report the genome sequence of the African coelacanth, Latimeria chalumnae. Through a phylogenomic analysis, we conclude that the lungfish, and not the coelacanth, is the closest living relative of tetrapods. Coelacanth protein-coding genes are significantly more slowly evolving than those of tetrapods, unlike other genomic features. Analyses of changes in genes and regulatory elements during the vertebrate adaptation to land highlight genes involved in immunity, nitrogen excretion and the development of fins, tail, ear, eye, brain and olfaction. Functional assays of enhancers involved in the fin-to-limb transition and in the emergence of extra-embryonic tissues show the importance of the coelacanth genome as a blueprint for understanding tetrapod evolution.
- Full Text:
- Date Issued: 2013
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