Using risk mitigation approaches to define the requirements for software escrow
- Authors: Rode, Karl
- Date: 2015
- Subjects: Escrows , Source code (Computer Science)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4714 , http://hdl.handle.net/10962/d1017936
- Description: Two or more parties entering into a contract for service or goods may make use of an escrow of the funds for payment to enable trust in the contract. In such an event the documents or financial instruments, the object(s) in escrow, are held in trust by a trusted third party (escrow provider) until the specified conditions are fulfilled. In the scenario of software escrow, the object of escrow is typically the source code, and the specified release conditions usually address potential scenarios wherein the software provider becomes unable to continue providing services (such as due to bankruptcy or a change in services provided, etc.) The subject of software escrow is not well documented in the academic body of work, with the largest information sources, active commentary and supporting papers provided by commercial software escrow providers, both in South Africa and abroad. This work maps the software escrow topic onto the King III compliance framework in South Africa. This is of value since any users of bespoke developed applications may require extended professional assistance to align with the King III guidelines. The supporting risk assessment model developed in this work will serve as a tool to evaluate and motivate for software escrow agreements. It will also provide an overview of the various escrow agreement types and will transfer the focus to the value proposition that they each hold. Initial research has indicated that current awareness of software escrow in industry is still very low. This was evidenced by the significant number of approached specialists that declined to participate in the survey due to their own admitted inexperience in applying the discipline of software escrow within their companies. Moreover, the participants that contributed to the research indicated that they only required software escrow for medium to highly critical applications. This proved the value of assessing the various risk factors that bespoke software development introduces, as well as the risk mitigation options available, through tools such as escrow, to reduce the actual and residual risk to a manageable level.
- Full Text:
- Date Issued: 2015
- Authors: Rode, Karl
- Date: 2015
- Subjects: Escrows , Source code (Computer Science)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4714 , http://hdl.handle.net/10962/d1017936
- Description: Two or more parties entering into a contract for service or goods may make use of an escrow of the funds for payment to enable trust in the contract. In such an event the documents or financial instruments, the object(s) in escrow, are held in trust by a trusted third party (escrow provider) until the specified conditions are fulfilled. In the scenario of software escrow, the object of escrow is typically the source code, and the specified release conditions usually address potential scenarios wherein the software provider becomes unable to continue providing services (such as due to bankruptcy or a change in services provided, etc.) The subject of software escrow is not well documented in the academic body of work, with the largest information sources, active commentary and supporting papers provided by commercial software escrow providers, both in South Africa and abroad. This work maps the software escrow topic onto the King III compliance framework in South Africa. This is of value since any users of bespoke developed applications may require extended professional assistance to align with the King III guidelines. The supporting risk assessment model developed in this work will serve as a tool to evaluate and motivate for software escrow agreements. It will also provide an overview of the various escrow agreement types and will transfer the focus to the value proposition that they each hold. Initial research has indicated that current awareness of software escrow in industry is still very low. This was evidenced by the significant number of approached specialists that declined to participate in the survey due to their own admitted inexperience in applying the discipline of software escrow within their companies. Moreover, the participants that contributed to the research indicated that they only required software escrow for medium to highly critical applications. This proved the value of assessing the various risk factors that bespoke software development introduces, as well as the risk mitigation options available, through tools such as escrow, to reduce the actual and residual risk to a manageable level.
- Full Text:
- Date Issued: 2015
Geomorphic origin and dynamics of deep, peat-filled, valley bottom wetlands dominated by palmiet (Prionium serratum) : a case study based on the Goukou Wetland, Western Cape
- Authors: Job, Nancy Merle
- Date: 2014
- Subjects: Wetlands -- South Africa -- Western Cape , Peatlands -- South Africa -- Western Cape , Peatland conservation -- South Africa -- Western Cape , Peatland management -- South Africa , Aquatic plants -- South Africa -- Western Cape , Geomorphology -- South Africa -- Western Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4782 , http://hdl.handle.net/10962/d1013122
- Description: The Goukou Wetland is a 700 ha unchannelled valley bottom wetland near the town of Riversdale in the Western Cape of South Africa. The wetland is approximately 16 km long and between 200 and 800 m wide, with peat deposits up to 8 m deep that get progressively shallower downstream. The Goukou Wetland is one of the last remaining intact peatlands of significant size in the Western Cape. However, there is increasing human pressure on these peat wetlands, where the dominant plant is palmiet (Prionium serratum), which is endemic to the Western and Eastern Cape Provinces of South Africa. Palmiet is viewed as a problem plant by farmers as it is believed to block waterways and promote inundation of arable land and infrastructure. Many landowners therefore actively remove palmiet from peatlands, threatening the integrity of these wetlands. Although the hydrogeomorphic origin of large, non-peat floodplain and valley bottom wetlands has been investigated in South Africa, unchannelled valley-bottom wetlands with deep peat accumulations are rare features and have not been well studied. The hydrogeomorphic factors leading to peat accumulation have been documented elsewhere in Southern Africa, where aggradation due to sedimentation along trunk streams may block a tributary stream, elevating the local base level of the tributary, creating the accommodation space for organic sedimentation. Alternatively, sedimentation along a trunk stream at the toe of a tributary stream may similarly block a trunk stream, promoting organic sedimentation along the trunk stream upstream of the tributary. This pattern of peat accumulation is associated with declining peat thickness upstream of the blocked valley. In the case of the Goukou Wetland, however, peat depth and organic content was found to increase consistently upstream from the toe to the head of the wetland. The Goukou Wetland was graded along its length, with gradient increasing consistently upstream in response to longitudinal variation in discharge. There was no clear relationship between peat formation and tributary streams blocking the wetland. Instead, the distribution of peat and the extent of the wetland appeared to be controlled by the plant palmiet, whose clonal nature and robust root, rhizome and stem system allowed it to grow from channel banks and islands into fast-flowing river channels, slowing river flows and ultimately blocking the channel. The promotion of diffuse flows within the dense, monospecific stands of palmiet creates conditions conducive to water retention and peat accumulation. By growing across the full width of the valley floor, the plant is able to constrict the stream, trapping sediment and slowing flows such that the fluvial environment is changed from a fast flowing stream to one with slow, diffuse flow. These processes appear to lead to the formation of organic sediment, accumulating to form a deep peat basin. The sustained input of water from the folded and fractured quartzite lithologies of the Cape Supergroup that make up the Langeberg Mountains, which provide the bulk of the water supply to the wetland, is also important in promoting permanent flooding in the wetland. A feature that characterized the wetland was the fact that bedrock across the valley beneath the peat deposits exhibited a remarkably uniform elevation. This suggests that over long periods of time (tens to hundreds of thousands of years), bedrock has been laterally planed across the valley floor. It is proposed that valley widening associated with lateral planning of Uitenhage Formation rocks has taken place during periods of episodic very high flows. During these episodes, erosion cuts into the peat wetland and valley sides, cutting to bedrock and planing the valley floor to a uniform elevation for a given distance from the head of the wetland. Periods of episodic degradation are followed by periods of renewed peat accumulation associated with palmiet establishment, such that the wetland valley is shaped by repeated cycles of cutting and filling. Palmiet can be considered an “ecosystem engineer” that is integral to the formation of these deep peat basins. Removal of palmiet from these systems is likely to have negative consequences for the wetland and its functions in that water storage will be reduced, erosion will increase dramatically, and the water-purification function of the wetlands will be lost. Management of these wetlands, which are close to the geomorphic threshold slopes for their size, is therefore essential if they are to be preserved for the benefit of human well-being.
- Full Text:
- Date Issued: 2014
- Authors: Job, Nancy Merle
- Date: 2014
- Subjects: Wetlands -- South Africa -- Western Cape , Peatlands -- South Africa -- Western Cape , Peatland conservation -- South Africa -- Western Cape , Peatland management -- South Africa , Aquatic plants -- South Africa -- Western Cape , Geomorphology -- South Africa -- Western Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4782 , http://hdl.handle.net/10962/d1013122
- Description: The Goukou Wetland is a 700 ha unchannelled valley bottom wetland near the town of Riversdale in the Western Cape of South Africa. The wetland is approximately 16 km long and between 200 and 800 m wide, with peat deposits up to 8 m deep that get progressively shallower downstream. The Goukou Wetland is one of the last remaining intact peatlands of significant size in the Western Cape. However, there is increasing human pressure on these peat wetlands, where the dominant plant is palmiet (Prionium serratum), which is endemic to the Western and Eastern Cape Provinces of South Africa. Palmiet is viewed as a problem plant by farmers as it is believed to block waterways and promote inundation of arable land and infrastructure. Many landowners therefore actively remove palmiet from peatlands, threatening the integrity of these wetlands. Although the hydrogeomorphic origin of large, non-peat floodplain and valley bottom wetlands has been investigated in South Africa, unchannelled valley-bottom wetlands with deep peat accumulations are rare features and have not been well studied. The hydrogeomorphic factors leading to peat accumulation have been documented elsewhere in Southern Africa, where aggradation due to sedimentation along trunk streams may block a tributary stream, elevating the local base level of the tributary, creating the accommodation space for organic sedimentation. Alternatively, sedimentation along a trunk stream at the toe of a tributary stream may similarly block a trunk stream, promoting organic sedimentation along the trunk stream upstream of the tributary. This pattern of peat accumulation is associated with declining peat thickness upstream of the blocked valley. In the case of the Goukou Wetland, however, peat depth and organic content was found to increase consistently upstream from the toe to the head of the wetland. The Goukou Wetland was graded along its length, with gradient increasing consistently upstream in response to longitudinal variation in discharge. There was no clear relationship between peat formation and tributary streams blocking the wetland. Instead, the distribution of peat and the extent of the wetland appeared to be controlled by the plant palmiet, whose clonal nature and robust root, rhizome and stem system allowed it to grow from channel banks and islands into fast-flowing river channels, slowing river flows and ultimately blocking the channel. The promotion of diffuse flows within the dense, monospecific stands of palmiet creates conditions conducive to water retention and peat accumulation. By growing across the full width of the valley floor, the plant is able to constrict the stream, trapping sediment and slowing flows such that the fluvial environment is changed from a fast flowing stream to one with slow, diffuse flow. These processes appear to lead to the formation of organic sediment, accumulating to form a deep peat basin. The sustained input of water from the folded and fractured quartzite lithologies of the Cape Supergroup that make up the Langeberg Mountains, which provide the bulk of the water supply to the wetland, is also important in promoting permanent flooding in the wetland. A feature that characterized the wetland was the fact that bedrock across the valley beneath the peat deposits exhibited a remarkably uniform elevation. This suggests that over long periods of time (tens to hundreds of thousands of years), bedrock has been laterally planed across the valley floor. It is proposed that valley widening associated with lateral planning of Uitenhage Formation rocks has taken place during periods of episodic very high flows. During these episodes, erosion cuts into the peat wetland and valley sides, cutting to bedrock and planing the valley floor to a uniform elevation for a given distance from the head of the wetland. Periods of episodic degradation are followed by periods of renewed peat accumulation associated with palmiet establishment, such that the wetland valley is shaped by repeated cycles of cutting and filling. Palmiet can be considered an “ecosystem engineer” that is integral to the formation of these deep peat basins. Removal of palmiet from these systems is likely to have negative consequences for the wetland and its functions in that water storage will be reduced, erosion will increase dramatically, and the water-purification function of the wetlands will be lost. Management of these wetlands, which are close to the geomorphic threshold slopes for their size, is therefore essential if they are to be preserved for the benefit of human well-being.
- Full Text:
- Date Issued: 2014
A marine chemical ecology study of the sea hare, Bursatella leachii in South Africa
- Authors: D'Souza, Nicole
- Date: 2013 , 2013-03-22
- Subjects: Sea hares (Mollusks) -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Ecology -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Behavior -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Defenses -- Behavior -- South Africa -- Kenton-on-Sea
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4283 , http://hdl.handle.net/10962/d1002952 , Sea hares (Mollusks) -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Ecology -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Behavior -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Defenses -- Behavior -- South Africa -- Kenton-on-Sea
- Description: The large cosmopolitan sea hare Bursatella leachii is a common resident in Eastern Cape river mouths during summer and late autumn where they congregate in beds of Zostera capensis to breed. In this thesis, the previously known toxic formamide marine secondary metabolite (-)-bursatellin (2.2), which may deter predators of South African specimens of the globally distributed sea hare Bursatella leachii, was isolated and identified (Chapter 2). There have been no previous chemical ecology studies of B. leachii and the latter half of this thesis is devoted to chemical ecology studies of this organism. Interestingly, the isolation of the (-)-diastereomer of 2.2 from specimens of B. leachii collected from the Kariega River mouth (near Kenton-on-Sea) suggests that the South African specimens of this species are similar to specimens collected from Puerto Rico and from the Mediterranean Sea. Two different chromatographic techniques for isolating 2.2 were compared in order to maximize the amount of 2.2 isolated from the Kariega River mouth sea hares. The doubling of selected resonances observed in both the ¹H and ¹³C NMR spectra of the bursatellin isolated in this study suggest one of three possibilities; either firstly, the presence of closely related compound(s), secondly, the presence of diastereomers or thirdly the presence of rotamers. Through NMR kinetic studies, we were able to establish that the presence of rotamers was very unlikely due to no change in the relative ratio (3:1) of the ¹H NMR signals with an increase in temperature. Although the attempted synthesis of the acetate derivative (2.28), as a means of separating a diastereomeric mixture was successful, the chromatographic separation of the proposed acetylated diastereomers was not successful. Preparation of the camphanate ester derivatives (e.g. 2.30) proved to be unsuccessful. Five B. leachii specimens were dissected, their organs separated and individually extracted with methanol. The methanol extracts were individually chromatographed on HP-20 media, and the distribution of bursatellin determined by isolation and NMR. It was evident from this investigation that the distribution of 2.2 within individual B. leachii specimens was found to be highest within the B. leachii ink gland. The lower amounts of 2.2 contained in the digestive system, relative to other organs, was hypothesized to occur because 2.2 is sequestered from the diet of the sea hare and efficiently moved from the gut to various organs around the body where it is stored. The absence of 2.2 from the skin was surprising and may be a result of a smaller mass of skin relative to other organs coupled with the limitations of the chromatographic separation techniques employed. Surprisingly, no bursatellin was found within juvenile sea hares. Chapter three discusses the isolation of ilimaquinone (3.1) and pelorol (3.19) from the sponge Hippospongia metachroma and the structure elucidation of each compound using computer modeling to illustrate the conformation. It was deemed necessary to isolate these well known and abundant bioactive marine natural products from a sponge as standard compounds in the bioassays given the paucity of 2.2 available for this study. Chapter four describes the assays used to test the biological activity of the bursatellin 2.2 compared to the generally bioactive ilimaquinone and the structurally related and commercially available broad spectrum antibiotic chloramphenicol. B. leachii, a shell-less marine mollusc inhabits a variety of intertidal habitats and, therefore, is exposed to several different predators, yet does not appear to have any specific predators. Potential predators of this sea hare in the Kariega Estuary could be fish and amphipods which are found in close proximity to these sea hares. Results of the assays showed that at roughly natural concentrations, (calculated from the isolated chromatographic yield) feeding was deterred by the fish and amphipods, which implied that 2.2 may confer a defensive role within the organism. The relatively high concentration present within the ink gland of B. leachii may support this hypothesis. Surprisingly, given its structural similarity to chloramphenicol, 2.3 did not show any antimicrobial action against five of the six bacterial strains against which it was screened [chloramphenicol inhibited the growth of all the bacterial strains at very low concentrations (0.25 mg/mL)]. Bursatellin was found to be only active against Staphylococus aureus at high concentrations ca. 2 mg/mL when compared to chloramphenicol. Neither bursatellin nor chloramphenicol showed anti-fungal activity. Although this study suggests that the sea hares may use chemical defences in addition to opaline ink to defend themselves, they also live within the seagrass Z. capensis, which possibly provides the sea hare with a cryptic form of physical defence against several predators that are unable to swim freely within the weed beds in the littoral zone of the estuary. , Adobe Acrobat 9.53 Paper Capture Plug-in
- Full Text:
- Date Issued: 2013
- Authors: D'Souza, Nicole
- Date: 2013 , 2013-03-22
- Subjects: Sea hares (Mollusks) -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Ecology -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Behavior -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Defenses -- Behavior -- South Africa -- Kenton-on-Sea
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4283 , http://hdl.handle.net/10962/d1002952 , Sea hares (Mollusks) -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Ecology -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Behavior -- South Africa -- Kenton-on-Sea , Sea hares (Mollusks) -- Defenses -- Behavior -- South Africa -- Kenton-on-Sea
- Description: The large cosmopolitan sea hare Bursatella leachii is a common resident in Eastern Cape river mouths during summer and late autumn where they congregate in beds of Zostera capensis to breed. In this thesis, the previously known toxic formamide marine secondary metabolite (-)-bursatellin (2.2), which may deter predators of South African specimens of the globally distributed sea hare Bursatella leachii, was isolated and identified (Chapter 2). There have been no previous chemical ecology studies of B. leachii and the latter half of this thesis is devoted to chemical ecology studies of this organism. Interestingly, the isolation of the (-)-diastereomer of 2.2 from specimens of B. leachii collected from the Kariega River mouth (near Kenton-on-Sea) suggests that the South African specimens of this species are similar to specimens collected from Puerto Rico and from the Mediterranean Sea. Two different chromatographic techniques for isolating 2.2 were compared in order to maximize the amount of 2.2 isolated from the Kariega River mouth sea hares. The doubling of selected resonances observed in both the ¹H and ¹³C NMR spectra of the bursatellin isolated in this study suggest one of three possibilities; either firstly, the presence of closely related compound(s), secondly, the presence of diastereomers or thirdly the presence of rotamers. Through NMR kinetic studies, we were able to establish that the presence of rotamers was very unlikely due to no change in the relative ratio (3:1) of the ¹H NMR signals with an increase in temperature. Although the attempted synthesis of the acetate derivative (2.28), as a means of separating a diastereomeric mixture was successful, the chromatographic separation of the proposed acetylated diastereomers was not successful. Preparation of the camphanate ester derivatives (e.g. 2.30) proved to be unsuccessful. Five B. leachii specimens were dissected, their organs separated and individually extracted with methanol. The methanol extracts were individually chromatographed on HP-20 media, and the distribution of bursatellin determined by isolation and NMR. It was evident from this investigation that the distribution of 2.2 within individual B. leachii specimens was found to be highest within the B. leachii ink gland. The lower amounts of 2.2 contained in the digestive system, relative to other organs, was hypothesized to occur because 2.2 is sequestered from the diet of the sea hare and efficiently moved from the gut to various organs around the body where it is stored. The absence of 2.2 from the skin was surprising and may be a result of a smaller mass of skin relative to other organs coupled with the limitations of the chromatographic separation techniques employed. Surprisingly, no bursatellin was found within juvenile sea hares. Chapter three discusses the isolation of ilimaquinone (3.1) and pelorol (3.19) from the sponge Hippospongia metachroma and the structure elucidation of each compound using computer modeling to illustrate the conformation. It was deemed necessary to isolate these well known and abundant bioactive marine natural products from a sponge as standard compounds in the bioassays given the paucity of 2.2 available for this study. Chapter four describes the assays used to test the biological activity of the bursatellin 2.2 compared to the generally bioactive ilimaquinone and the structurally related and commercially available broad spectrum antibiotic chloramphenicol. B. leachii, a shell-less marine mollusc inhabits a variety of intertidal habitats and, therefore, is exposed to several different predators, yet does not appear to have any specific predators. Potential predators of this sea hare in the Kariega Estuary could be fish and amphipods which are found in close proximity to these sea hares. Results of the assays showed that at roughly natural concentrations, (calculated from the isolated chromatographic yield) feeding was deterred by the fish and amphipods, which implied that 2.2 may confer a defensive role within the organism. The relatively high concentration present within the ink gland of B. leachii may support this hypothesis. Surprisingly, given its structural similarity to chloramphenicol, 2.3 did not show any antimicrobial action against five of the six bacterial strains against which it was screened [chloramphenicol inhibited the growth of all the bacterial strains at very low concentrations (0.25 mg/mL)]. Bursatellin was found to be only active against Staphylococus aureus at high concentrations ca. 2 mg/mL when compared to chloramphenicol. Neither bursatellin nor chloramphenicol showed anti-fungal activity. Although this study suggests that the sea hares may use chemical defences in addition to opaline ink to defend themselves, they also live within the seagrass Z. capensis, which possibly provides the sea hare with a cryptic form of physical defence against several predators that are unable to swim freely within the weed beds in the littoral zone of the estuary. , Adobe Acrobat 9.53 Paper Capture Plug-in
- Full Text:
- Date Issued: 2013
Effects of habitat patch size and isolation on the population structure of two siphonarian limpets
- Authors: Johnson, Linda Gail
- Date: 2011
- Subjects: Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5679 , http://hdl.handle.net/10962/d1005364 , Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Description: Habitat fragmentation is a fundamental process that determines trends and patterns of distribution and density of organisms. These patterns and trends have been the focus of numerous terrestrial and marine studies and have led to the development of several explanatory hypotheses. Systems and organisms are dynamic and no single hypothesis has adequately accounted for these observed trends. It is therefore important to understand the interaction of these processes and patterns to explain the mechanisms controlling population dynamics. The main aim of this thesis was to test the effect of patch size and isolation on organisms with different modes of dispersal. Mode of dispersal has previously been examined as a factor influencing the effects that habitat fragmentation has on organisms. Very few studies have, however, examined the mode of dispersal of marine organisms because it has long been assumed that marine animals are not directly influenced by habitat fragmentation because of large-scale dispersal. I used two co-occurring species of siphonariid limpets with different modes of dispersal to highlight that not only are marine organisms affected by habitat fragmentation but that they are affected in different ways. The two species of limpet, Siphonaria serrata and Siphonaria concinna, are found within the same habitat and have the same geographic range along the South African coastline, however, they have different modes of dispersal and development. The effect of patch size on organism density has been examined to a great extent with varied results. This study investigated whether habitat patch size played a key role in determining population density and limpet body sizes. The two species are found on the eastern and southern coasts of South Africa were examined across this entire biogeographic range. Patch size was found to have a significant effect on population density of the pelagic developer, S. concinna, but not the direct developing S. serrata. Patch size did play a role in determining limpet body size for both species. S. concinna body size was proposed to be effected directly by patch size whilst S. serrata body size was proposed to be affected indirectly by the effects of the S. concinna densities. The same patterns and trends were observed at five of the seven examined regions across the biogeographic range. The trends observed for S. concinna with respect to patch size conform to the source-sink hypothesis with large habitat patches acting as the source populations whilst the small habitat patches acted as the sink populations. Many previous studies have focused on the effects of habitat patch size at one point in time or over one season. I tested the influence of habitat patch size on the two species of limpets over a period of twelve months to determine whether the trends observed were consistent over time or whether populations varied with time. S. concinna showed a consistently significant difference between small and large patches; whilst S. serrata did not follow a consistent pattern. The mode of dispersal for the two limpets was used to explain the different trends shown by the two species. This examination allowed for the determining of source and sink populations for S. concinna through the examination of fluctuations in limpet body sizes and population densities at small and large habitat patches over twelve months. The direct developing S. serrata trends could not be explained using source-sink theory, as populations were independent from one another. S. serrata demonstrated body size differences at small and large patches which, may be explained by interspecific and intraspecific competition. Habitat isolation is known to play an important role in determining the structure of assemblages and the densities of populations. In this study the population density of the pelagic developing S. concinna showed a weak influence of degree of isolation whilst that of the direct developing S. serrata did not, which may be because of habitat patches along the South African coastline not having great enough degrees of isolation. The population size-structure was influenced directly influenced by isolation for S. concinna, whilst the different population size structure for S. serrata may be explained by assemblage co-dependence. The mode of dispersal showed effects on the relationship of population density and population size-structure with habitat size and isolation. This study indicates the importance of investigating patterns and processes across a range of spatial and temporal scales to gain a comprehensive understanding of factors effecting intertidal organisms.
- Full Text:
- Date Issued: 2011
- Authors: Johnson, Linda Gail
- Date: 2011
- Subjects: Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5679 , http://hdl.handle.net/10962/d1005364 , Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Description: Habitat fragmentation is a fundamental process that determines trends and patterns of distribution and density of organisms. These patterns and trends have been the focus of numerous terrestrial and marine studies and have led to the development of several explanatory hypotheses. Systems and organisms are dynamic and no single hypothesis has adequately accounted for these observed trends. It is therefore important to understand the interaction of these processes and patterns to explain the mechanisms controlling population dynamics. The main aim of this thesis was to test the effect of patch size and isolation on organisms with different modes of dispersal. Mode of dispersal has previously been examined as a factor influencing the effects that habitat fragmentation has on organisms. Very few studies have, however, examined the mode of dispersal of marine organisms because it has long been assumed that marine animals are not directly influenced by habitat fragmentation because of large-scale dispersal. I used two co-occurring species of siphonariid limpets with different modes of dispersal to highlight that not only are marine organisms affected by habitat fragmentation but that they are affected in different ways. The two species of limpet, Siphonaria serrata and Siphonaria concinna, are found within the same habitat and have the same geographic range along the South African coastline, however, they have different modes of dispersal and development. The effect of patch size on organism density has been examined to a great extent with varied results. This study investigated whether habitat patch size played a key role in determining population density and limpet body sizes. The two species are found on the eastern and southern coasts of South Africa were examined across this entire biogeographic range. Patch size was found to have a significant effect on population density of the pelagic developer, S. concinna, but not the direct developing S. serrata. Patch size did play a role in determining limpet body size for both species. S. concinna body size was proposed to be effected directly by patch size whilst S. serrata body size was proposed to be affected indirectly by the effects of the S. concinna densities. The same patterns and trends were observed at five of the seven examined regions across the biogeographic range. The trends observed for S. concinna with respect to patch size conform to the source-sink hypothesis with large habitat patches acting as the source populations whilst the small habitat patches acted as the sink populations. Many previous studies have focused on the effects of habitat patch size at one point in time or over one season. I tested the influence of habitat patch size on the two species of limpets over a period of twelve months to determine whether the trends observed were consistent over time or whether populations varied with time. S. concinna showed a consistently significant difference between small and large patches; whilst S. serrata did not follow a consistent pattern. The mode of dispersal for the two limpets was used to explain the different trends shown by the two species. This examination allowed for the determining of source and sink populations for S. concinna through the examination of fluctuations in limpet body sizes and population densities at small and large habitat patches over twelve months. The direct developing S. serrata trends could not be explained using source-sink theory, as populations were independent from one another. S. serrata demonstrated body size differences at small and large patches which, may be explained by interspecific and intraspecific competition. Habitat isolation is known to play an important role in determining the structure of assemblages and the densities of populations. In this study the population density of the pelagic developing S. concinna showed a weak influence of degree of isolation whilst that of the direct developing S. serrata did not, which may be because of habitat patches along the South African coastline not having great enough degrees of isolation. The population size-structure was influenced directly influenced by isolation for S. concinna, whilst the different population size structure for S. serrata may be explained by assemblage co-dependence. The mode of dispersal showed effects on the relationship of population density and population size-structure with habitat size and isolation. This study indicates the importance of investigating patterns and processes across a range of spatial and temporal scales to gain a comprehensive understanding of factors effecting intertidal organisms.
- Full Text:
- Date Issued: 2011
Studies towards the development of novel HIV-1 integrase inhibitors
- Authors: Lee, Yi-Chen
- Date: 2010
- Subjects: HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Nuclear magnetic resonance , Heterocyclic compounds -- Derivatives , Enzyme inhibitors , Chemical inhibitors , Quinoline
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4357 , http://hdl.handle.net/10962/d1005022 , HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Nuclear magnetic resonance , Heterocyclic compounds -- Derivatives , Enzyme inhibitors , Chemical inhibitors , Quinoline
- Description: The project has focused on the preparation of several series of compounds designed as potential HIV-1 integrase inhibitors. Various 2-nitrobenzaldehydes have been reacted with two activated alkenes, methyl vinyl ketone (MVK) and methyl acrylate, under Baylis-Hillman conditions to afford α-methylene-β-hydroxylalkyl derivatives in moderate to excellent yields. The reactions were conducted using the tertiary amine catalysts, 1,4-diazabicyclo[2.2.2]octane(DABCO) or 3-hydroxyquinuclidine (3-HQ) with chloroform as solvent, and yields were optimised by varying the catalyst, reagent concentrations and the reaction time. Reductive cyclization of the Baylis-Hillman adducts via catalytic hydrogenation, using 10% palladiumon-carbon catalyst in ethanol, afforded quinoline and quinoline N-oxide derivatives. In some cases “acyclic” reduction products were also isolated. Reaction of the Baylis-Hillman MVK adducts with HCl, has resulted in effective nucleophilic (SN’) displacement of the hydroxyl group to afford allylic chloride derivatives. Direct substitution of these chloro derivatives by secondary or primary amines, followed by catalytic hydrogenation gave quinoline derivatives containing a 3-aminomethyl substituent. The Baylis-Hillman ester adducts obtained from reaction with methyl acrylate were treated directly with various amines to give diastereomeric conjugate addition products. Reactions with piperazine gave N,N’-disubstituted piperazine products. The piperidine derivatives have been dehydrated to give cinnamate esters in moderate yields. The products, which have all been satisfactorily characterised by elemental (HRMS) and spectroscopic (1- and 2-D NMR) analysis, constitute a “library” of compounds for in silico and in vitro studies as potential HIV integrase inhibitors.
- Full Text:
- Date Issued: 2010
- Authors: Lee, Yi-Chen
- Date: 2010
- Subjects: HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Nuclear magnetic resonance , Heterocyclic compounds -- Derivatives , Enzyme inhibitors , Chemical inhibitors , Quinoline
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4357 , http://hdl.handle.net/10962/d1005022 , HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Nuclear magnetic resonance , Heterocyclic compounds -- Derivatives , Enzyme inhibitors , Chemical inhibitors , Quinoline
- Description: The project has focused on the preparation of several series of compounds designed as potential HIV-1 integrase inhibitors. Various 2-nitrobenzaldehydes have been reacted with two activated alkenes, methyl vinyl ketone (MVK) and methyl acrylate, under Baylis-Hillman conditions to afford α-methylene-β-hydroxylalkyl derivatives in moderate to excellent yields. The reactions were conducted using the tertiary amine catalysts, 1,4-diazabicyclo[2.2.2]octane(DABCO) or 3-hydroxyquinuclidine (3-HQ) with chloroform as solvent, and yields were optimised by varying the catalyst, reagent concentrations and the reaction time. Reductive cyclization of the Baylis-Hillman adducts via catalytic hydrogenation, using 10% palladiumon-carbon catalyst in ethanol, afforded quinoline and quinoline N-oxide derivatives. In some cases “acyclic” reduction products were also isolated. Reaction of the Baylis-Hillman MVK adducts with HCl, has resulted in effective nucleophilic (SN’) displacement of the hydroxyl group to afford allylic chloride derivatives. Direct substitution of these chloro derivatives by secondary or primary amines, followed by catalytic hydrogenation gave quinoline derivatives containing a 3-aminomethyl substituent. The Baylis-Hillman ester adducts obtained from reaction with methyl acrylate were treated directly with various amines to give diastereomeric conjugate addition products. Reactions with piperazine gave N,N’-disubstituted piperazine products. The piperidine derivatives have been dehydrated to give cinnamate esters in moderate yields. The products, which have all been satisfactorily characterised by elemental (HRMS) and spectroscopic (1- and 2-D NMR) analysis, constitute a “library” of compounds for in silico and in vitro studies as potential HIV integrase inhibitors.
- Full Text:
- Date Issued: 2010
Effect of feeding regimen, temperature and stocking density on growth and survival of juvenile clownfish (Amphiprion percula)
- Authors: Johnston, Gavin
- Date: 2001
- Subjects: Anemonefishes , Fishes -- Feeding and feeds , Fishes -- Growth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5274 , http://hdl.handle.net/10962/d1005118 , Anemonefishes , Fishes -- Feeding and feeds , Fishes -- Growth
- Description: In aquaculture, a thorough knowledge of the specific environmental requirements of a species is needed in order to maximize growth rate and survival. There is a paucity of data regarding the fundamental environmental requirements for the ongrowing phase of clownfish juveniles. This prompted the design of three experiments to determine the best feeding regimen, temperature and stocking density that maximize growth and survival of Amphiprion percula. Ration size and feeding frequency are important factors for optimizing fish growth during the juvenile grow-out phase. A factorial growth trial was conducted to determine the effect of feeding frequency and ration size on the growth of juvenile clownfish (Amphiprion percula).Three feeding frequencies (1, 2 and 3 times daily) and six rations (2,4,6,8, 10 and 12 % body weight per day (BW.day⁻¹)) were used to test the growth response over a twelve week period. Non-linear regression analysis on the effect of ration, independent of feeding frequency, on growth resulted in a significant (n = 36; r² = 68.7) parabolic model: In y = -0.0302x² + 0.5159x + -4.4377. Maximum growth corresponded to a ration of 8.5% BW.day⁻¹. Survival as a function of ration was significantly lower at 2% BW.day⁻¹. Data were further examined with Analysis of CoVariance (ANCOVA) to determine the effect of ration on growth at each feeding frequency. The combination revealed a maximum growth rate when the fish were fed a ration of 10% BW.day⁻¹ divided into two equal meals. The required ration per meal to maintain maximum growth was also found to decrease as feeding frequency increased. The determination of the best temperature for growth is of great importance due to the direct relationship between fish metabolism and temperature. The thermal preferendum of A. percula has already been estimated at 26 ± 0.7°C but it is not known whether this closely approximates the temperature for maximum growth. Sixteen tanks were set to different temperatures ranging between 21.5 and 30.2 °C. Ten juvenile A. percula were placed in each tank and growth was measured fortnightly over the course of the 10 week experiment. Non-linear regression analysis resulted in significant models for fish length (y = -0.0005x² + 0.00267x - 0.0338; r² = 56.7, n = 11) and weight (y= -0.00016x² + 0.0084x - 0.1073; r² = 61.6, n = 11). These models predict that maximum growth would be at 27.7 and 27.1 °C for length and weight, respectively. Temperature, over the range tested, had no apparent effect on survival. There was no significant difference between the temperatures for maximum growth and the preferred temperature. The effect of stocking densities ranging from 0.2 fish.L¹ to 4.0 fish.L⁻¹ on growth were used in the third experiment. The fish were fed to satiation twice daily and growth was measured fortnightly throughout the 8 week experiment. No effects on growth, survival or coefficient of variation were found within the range of stocking densities tested.
- Full Text:
- Date Issued: 2001
- Authors: Johnston, Gavin
- Date: 2001
- Subjects: Anemonefishes , Fishes -- Feeding and feeds , Fishes -- Growth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5274 , http://hdl.handle.net/10962/d1005118 , Anemonefishes , Fishes -- Feeding and feeds , Fishes -- Growth
- Description: In aquaculture, a thorough knowledge of the specific environmental requirements of a species is needed in order to maximize growth rate and survival. There is a paucity of data regarding the fundamental environmental requirements for the ongrowing phase of clownfish juveniles. This prompted the design of three experiments to determine the best feeding regimen, temperature and stocking density that maximize growth and survival of Amphiprion percula. Ration size and feeding frequency are important factors for optimizing fish growth during the juvenile grow-out phase. A factorial growth trial was conducted to determine the effect of feeding frequency and ration size on the growth of juvenile clownfish (Amphiprion percula).Three feeding frequencies (1, 2 and 3 times daily) and six rations (2,4,6,8, 10 and 12 % body weight per day (BW.day⁻¹)) were used to test the growth response over a twelve week period. Non-linear regression analysis on the effect of ration, independent of feeding frequency, on growth resulted in a significant (n = 36; r² = 68.7) parabolic model: In y = -0.0302x² + 0.5159x + -4.4377. Maximum growth corresponded to a ration of 8.5% BW.day⁻¹. Survival as a function of ration was significantly lower at 2% BW.day⁻¹. Data were further examined with Analysis of CoVariance (ANCOVA) to determine the effect of ration on growth at each feeding frequency. The combination revealed a maximum growth rate when the fish were fed a ration of 10% BW.day⁻¹ divided into two equal meals. The required ration per meal to maintain maximum growth was also found to decrease as feeding frequency increased. The determination of the best temperature for growth is of great importance due to the direct relationship between fish metabolism and temperature. The thermal preferendum of A. percula has already been estimated at 26 ± 0.7°C but it is not known whether this closely approximates the temperature for maximum growth. Sixteen tanks were set to different temperatures ranging between 21.5 and 30.2 °C. Ten juvenile A. percula were placed in each tank and growth was measured fortnightly over the course of the 10 week experiment. Non-linear regression analysis resulted in significant models for fish length (y = -0.0005x² + 0.00267x - 0.0338; r² = 56.7, n = 11) and weight (y= -0.00016x² + 0.0084x - 0.1073; r² = 61.6, n = 11). These models predict that maximum growth would be at 27.7 and 27.1 °C for length and weight, respectively. Temperature, over the range tested, had no apparent effect on survival. There was no significant difference between the temperatures for maximum growth and the preferred temperature. The effect of stocking densities ranging from 0.2 fish.L¹ to 4.0 fish.L⁻¹ on growth were used in the third experiment. The fish were fed to satiation twice daily and growth was measured fortnightly throughout the 8 week experiment. No effects on growth, survival or coefficient of variation were found within the range of stocking densities tested.
- Full Text:
- Date Issued: 2001
Asymmetric α-alkylation reactions
- Authors: Klein, Rosalyn
- Date: 2000
- Subjects: Asymmetric synthesis , Alkylation , Chemical reactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4405 , http://hdl.handle.net/10962/d1006710 , Asymmetric synthesis , Alkylation , Chemical reactions
- Description: A novel camphor-derived hydroxy ketal 138 has been developed as a crural auxiliary, and used to prepare a series of six carboxylic esters of increasing steric bulk. The α-benzylation of this series of esters was achieved with diastereoselectivities of 59 - 83％ d. e. and in 39 - 48％ material yield. These results compared very favourably with those obtained in earlier studies using a regioisomeric analogue as the chiral auxiliary. Computer.modelling studies of the putative enolate intermediate has provided some insight into the possible mode of electrophilic attack at the α-carbon and the roles of the ketal protecting group and the lithium cation in these asymmetric transformations. In a related investigation, based on earlier work, a camphor-derived imino lactone has provided convenient access to α-alkyl α-amino acids, the imino lactone serving as a masked glycine equivalent. Using straight chain primary alkyl iodides [RI; R = Me, Et, Pr, Bu, CH₃(CH₂)₄ and CH₃(CH₄)₅], alkylation of the potassium enolate of the camphor-derived imino lactone was effected with 54 - 89％ d.e. and in 54 - 87％ material yield. Four novel alkylated derivatives were synthesised using isopropyl iodide, sec-butyl iodide and allyl iodide, the latter reagent resulting in both the monoallylated and diallylated products. While very good diastereoselectivities were achieved (83 - 88％ d. e.) in these reactions, the material yields from reaction with the secondary alkyl iodides were low (31- 35％) due, presumably, to their decreased electrophilicity. Computer modelling studies of the enolate were carried out and support the hypothesis of endo attack by the electrophile on the enolate intermediate. These studies also indicate the possibility of coordination of the postassium cation to the endocyclic ester oxygen, thus effectively anchoring the bulky cation away from the reaction site.
- Full Text:
- Date Issued: 2000
- Authors: Klein, Rosalyn
- Date: 2000
- Subjects: Asymmetric synthesis , Alkylation , Chemical reactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4405 , http://hdl.handle.net/10962/d1006710 , Asymmetric synthesis , Alkylation , Chemical reactions
- Description: A novel camphor-derived hydroxy ketal 138 has been developed as a crural auxiliary, and used to prepare a series of six carboxylic esters of increasing steric bulk. The α-benzylation of this series of esters was achieved with diastereoselectivities of 59 - 83％ d. e. and in 39 - 48％ material yield. These results compared very favourably with those obtained in earlier studies using a regioisomeric analogue as the chiral auxiliary. Computer.modelling studies of the putative enolate intermediate has provided some insight into the possible mode of electrophilic attack at the α-carbon and the roles of the ketal protecting group and the lithium cation in these asymmetric transformations. In a related investigation, based on earlier work, a camphor-derived imino lactone has provided convenient access to α-alkyl α-amino acids, the imino lactone serving as a masked glycine equivalent. Using straight chain primary alkyl iodides [RI; R = Me, Et, Pr, Bu, CH₃(CH₂)₄ and CH₃(CH₄)₅], alkylation of the potassium enolate of the camphor-derived imino lactone was effected with 54 - 89％ d.e. and in 54 - 87％ material yield. Four novel alkylated derivatives were synthesised using isopropyl iodide, sec-butyl iodide and allyl iodide, the latter reagent resulting in both the monoallylated and diallylated products. While very good diastereoselectivities were achieved (83 - 88％ d. e.) in these reactions, the material yields from reaction with the secondary alkyl iodides were low (31- 35％) due, presumably, to their decreased electrophilicity. Computer modelling studies of the enolate were carried out and support the hypothesis of endo attack by the electrophile on the enolate intermediate. These studies also indicate the possibility of coordination of the postassium cation to the endocyclic ester oxygen, thus effectively anchoring the bulky cation away from the reaction site.
- Full Text:
- Date Issued: 2000
The effect of diet and age-at-weaning on growth and survival of clownfish Amphiprion percula (Pisces : Pomacentridae)
- Authors: Gordon, Andrew K
- Date: 1999
- Subjects: Anemonefishes , Pomacentridae , Fishes -- Growth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5270 , http://hdl.handle.net/10962/d1005114 , Anemonefishes , Pomacentridae , Fishes -- Growth
- Description: The aim of this study was to improve the rearing of common clownfish Amphiprion percula, by weaning juveniles from a live feed to a formulated feed as early as possible, while still maintaining good growth and survival. The growth response of A. percula to a formulated dry feed was initially investigated. There was no difference in growth rate of juveniles fed a formulated feed, and the formulated feed supplemented with either Artemia or a Donax serra / Penaeus indicus combination. Amphiprion percula readily consumed the formulated feed, and the fishmeal/casein combination appeared an acceptable protein source. As the amount of protein included in a diet can have a profound effect on growth, the optimal dietary protein level for juvenile A. percula was investigated by feeding semipurified diets containing graded levels of protein, ranging from 40-65%. There was no difference in the growth rates of juveniles fed the various diets, however all diets promoted good growth with an average weight gain of 419%, and thus for the purposes of this study the diet formulation was deemed adequate. The histological study of the digestive system of larval A. percula revealed that the alimentary canal was advanced at hatching and that larvae start exogenous feeding immediately. Three days after hatch (DAH) the yolk sac is completely absorbed. In the hind-gut epithelium of 5-day-old larvae small supranuclear inclusion vacuoles appear, suggesting pinocytotic digestion, and by 7 DAH gastric glands are established in the epithelium of the stomach. Nine DAH supranuclear inclusion vacuoles appear in the epithelium of the mid-gut, indicating extracellular digestion and absorption across the lumen. As pinocytotic digestion of protein is less efficient than extracellular digestion, especially in the case of formulated feeds, it was hypothesised that the digestive system of A. percula could only effectively digest formulated feeds 9 DAH onwards. The two weaning experiments designed to test this hypothesis revealed that A. percula was able to utilise the formulated feed, without reduction in survival, from 7 DAH onwards. However, in terms of growth, the optimal time to wean juveniles from the live feed to the formulated dry feed was between 15 to 20 DAH. As A. percula accept a formulated feed and can benefit nutritionally from it, the dependence of larvae and juveniles on live feed can be reduced. This study has shown that the rearing of A. percula can been simplified and improved by weaning from 7 DAH with no reduction in survival, and from 15 to 20 DAH with no reduction in growth.
- Full Text:
- Date Issued: 1999
- Authors: Gordon, Andrew K
- Date: 1999
- Subjects: Anemonefishes , Pomacentridae , Fishes -- Growth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5270 , http://hdl.handle.net/10962/d1005114 , Anemonefishes , Pomacentridae , Fishes -- Growth
- Description: The aim of this study was to improve the rearing of common clownfish Amphiprion percula, by weaning juveniles from a live feed to a formulated feed as early as possible, while still maintaining good growth and survival. The growth response of A. percula to a formulated dry feed was initially investigated. There was no difference in growth rate of juveniles fed a formulated feed, and the formulated feed supplemented with either Artemia or a Donax serra / Penaeus indicus combination. Amphiprion percula readily consumed the formulated feed, and the fishmeal/casein combination appeared an acceptable protein source. As the amount of protein included in a diet can have a profound effect on growth, the optimal dietary protein level for juvenile A. percula was investigated by feeding semipurified diets containing graded levels of protein, ranging from 40-65%. There was no difference in the growth rates of juveniles fed the various diets, however all diets promoted good growth with an average weight gain of 419%, and thus for the purposes of this study the diet formulation was deemed adequate. The histological study of the digestive system of larval A. percula revealed that the alimentary canal was advanced at hatching and that larvae start exogenous feeding immediately. Three days after hatch (DAH) the yolk sac is completely absorbed. In the hind-gut epithelium of 5-day-old larvae small supranuclear inclusion vacuoles appear, suggesting pinocytotic digestion, and by 7 DAH gastric glands are established in the epithelium of the stomach. Nine DAH supranuclear inclusion vacuoles appear in the epithelium of the mid-gut, indicating extracellular digestion and absorption across the lumen. As pinocytotic digestion of protein is less efficient than extracellular digestion, especially in the case of formulated feeds, it was hypothesised that the digestive system of A. percula could only effectively digest formulated feeds 9 DAH onwards. The two weaning experiments designed to test this hypothesis revealed that A. percula was able to utilise the formulated feed, without reduction in survival, from 7 DAH onwards. However, in terms of growth, the optimal time to wean juveniles from the live feed to the formulated dry feed was between 15 to 20 DAH. As A. percula accept a formulated feed and can benefit nutritionally from it, the dependence of larvae and juveniles on live feed can be reduced. This study has shown that the rearing of A. percula can been simplified and improved by weaning from 7 DAH with no reduction in survival, and from 15 to 20 DAH with no reduction in growth.
- Full Text:
- Date Issued: 1999
Reproductive biology of the Egyptian free-tailed bat, Tadarida Aegyptiaca
- Authors: Tsita, Johannes Ngoako
- Date: 1994
- Subjects: Tadarida aegyptiaca -- Reproduction , Bats -- Reproduction
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5754 , http://hdl.handle.net/10962/d1005442 , Tadarida aegyptiaca -- Reproduction , Bats -- Reproduction
- Description: The reproductive biology of Tadarida aegyptiaca was studied using specimens collected in the Cape Province of South Africa. The morphology of the reproductive tract of the species was generally similar to that of other molossids, however, the absence of Cowpers glands was unusual. Spermatogenesis began in February and spermatozoa were released to the cauda epididymis during August and September. Follicular development started in March and culminated with the appearance of Graafian follicles in July. Ovulation probably occurred in August and specimens were pregnant by September. Gestation length was estimated to be four to five months and a single young was born in December. The data suggest that T. aegyptiaca is monotocous and monoestrous.
- Full Text:
- Date Issued: 1994
- Authors: Tsita, Johannes Ngoako
- Date: 1994
- Subjects: Tadarida aegyptiaca -- Reproduction , Bats -- Reproduction
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5754 , http://hdl.handle.net/10962/d1005442 , Tadarida aegyptiaca -- Reproduction , Bats -- Reproduction
- Description: The reproductive biology of Tadarida aegyptiaca was studied using specimens collected in the Cape Province of South Africa. The morphology of the reproductive tract of the species was generally similar to that of other molossids, however, the absence of Cowpers glands was unusual. Spermatogenesis began in February and spermatozoa were released to the cauda epididymis during August and September. Follicular development started in March and culminated with the appearance of Graafian follicles in July. Ovulation probably occurred in August and specimens were pregnant by September. Gestation length was estimated to be four to five months and a single young was born in December. The data suggest that T. aegyptiaca is monotocous and monoestrous.
- Full Text:
- Date Issued: 1994
Synthesis and interaction of secondary N-nitrosamines with acetylcholinesterase
- Authors: Mmutle, Tsietso Bernard
- Date: 1991
- Subjects: Chemistry, Physical and theoretical , Enzyme kinetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4058 , http://hdl.handle.net/10962/d1004119 , Chemistry, Physical and theoretical , Enzyme kinetics
- Description: Secondary N-nitrosamines: diphenylnitrosamine (DPhNA), dimethylnitrosamine (DMNA), diethylnitrosamine (DENA), dipropylnitrosamine (DPNA), dibutylnitrosamine (DBNA), diethanolnitrosamine (DEtNA), methylnitrosoglycine (MNGly), nitrosopyrrolidine (NPyr), nitrosomorpholine (NMor) and nitrosopiperidine (NPip) were synthesised and their interaction with acetylcholinesterase (AChE) was investigated. Analyses of kinetic results show that DMNA (Ki=34.78 μM); DENA (Ki=54.24 μM); DPNA(Ki=60.36 μM); DBNA(Ki=95.54 μM); DEtNA(Ki=43.68 μM)MNGly (Ki=30.18 μM); NPip (Ki=123 μM); NPyr (Ki=66.07 μM), NMor (Ki=73.93 μM) and DPhNA (Ki=20.32 μM) are competitive and reversible inhibitors of acetylcholinesterase, with respect to the substrate, acetylthiocholine chloride, ATChCl. With time they act as irreversible covalent inhibitors with dipropy1nitrosamine producing 72% inactivation after 60 minutes. Scatchard analyses of f1uorometric titrations, (Kd=0.75mM-4.09mM); gel chromatography (Kd=O. 80mM-4. 60mM) and equilibrium dia1ysis (Kd=O. 71mM- 4.21mM) for MNG1y, DMNA, DEtNA, DENA, DPNA, NPyr, DSNA, NMor and NPip show that these compounds have weaker affinity for the enzyme, as compared to the much tightly binding aromatic DPhNA, Kd values (0.65mM, 0.68mM and 0.68mM) for fluorometric experiments, gel chromatography and equilibrium dialysis respectively. In all cases, the number of binding sites of acetylcholinesterase averaged to four.
- Full Text:
- Date Issued: 1991
- Authors: Mmutle, Tsietso Bernard
- Date: 1991
- Subjects: Chemistry, Physical and theoretical , Enzyme kinetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4058 , http://hdl.handle.net/10962/d1004119 , Chemistry, Physical and theoretical , Enzyme kinetics
- Description: Secondary N-nitrosamines: diphenylnitrosamine (DPhNA), dimethylnitrosamine (DMNA), diethylnitrosamine (DENA), dipropylnitrosamine (DPNA), dibutylnitrosamine (DBNA), diethanolnitrosamine (DEtNA), methylnitrosoglycine (MNGly), nitrosopyrrolidine (NPyr), nitrosomorpholine (NMor) and nitrosopiperidine (NPip) were synthesised and their interaction with acetylcholinesterase (AChE) was investigated. Analyses of kinetic results show that DMNA (Ki=34.78 μM); DENA (Ki=54.24 μM); DPNA(Ki=60.36 μM); DBNA(Ki=95.54 μM); DEtNA(Ki=43.68 μM)MNGly (Ki=30.18 μM); NPip (Ki=123 μM); NPyr (Ki=66.07 μM), NMor (Ki=73.93 μM) and DPhNA (Ki=20.32 μM) are competitive and reversible inhibitors of acetylcholinesterase, with respect to the substrate, acetylthiocholine chloride, ATChCl. With time they act as irreversible covalent inhibitors with dipropy1nitrosamine producing 72% inactivation after 60 minutes. Scatchard analyses of f1uorometric titrations, (Kd=0.75mM-4.09mM); gel chromatography (Kd=O. 80mM-4. 60mM) and equilibrium dia1ysis (Kd=O. 71mM- 4.21mM) for MNG1y, DMNA, DEtNA, DENA, DPNA, NPyr, DSNA, NMor and NPip show that these compounds have weaker affinity for the enzyme, as compared to the much tightly binding aromatic DPhNA, Kd values (0.65mM, 0.68mM and 0.68mM) for fluorometric experiments, gel chromatography and equilibrium dialysis respectively. In all cases, the number of binding sites of acetylcholinesterase averaged to four.
- Full Text:
- Date Issued: 1991
The economic geology of the Okiep copper deposits, Namaqualand, South Africa
- Authors: Gadd-Claxton, D L
- Date: 1981 , 2013-04-04
- Subjects: Geology, Economic -- South Africa -- Okiep , Copper ores -- South Africa -- Okiep , Okiep (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4923 , http://hdl.handle.net/10962/d1004507 , Geology, Economic -- South Africa -- Okiep , Copper ores -- South Africa -- Okiep , Okiep (South Africa)
- Description: The Okiep Copper District situated in the north-western Cape Province, covers some 3 000 km and is the oldest mining area in the Republic of South Africa. The O'okiep Copper Company Limited commenced production in 1940 with a proven ore reserve of 9 million tons at 2,45 % cu. Production since 1940 and present ore reserves total some 93 million tonnes at 1,08 % Cu. The rocks comprising the Okiep Copper District are of Proterozoic age and have been subdivided into a meta-volcanosedimentary succession, intruded by various sub-horizontally emplaced granitoid intrusions. The various intrusions occurred at different stages relative to the main structural and metamorphic events. The copper deposits are confined to basic rocks which are the youngest major group of intrusives in the District. They occur as swarms of generally easterly-trending, steep northdipping, irregular dyke-like bodies consisting of diorite, anorthosite and norite. The dominant silicate constituents are andesite ranging to labradorite, hypersthene, biotite and phlogopite. Copper sulphides are preferentially associated with the more basic varieties. The copper sulphides are mainly chalcopyrite, bornite and subsidiary chalcocite. The copper content of the basic rocks is erratic ranging over small distances from a mere trace to several percent. Emplacement of the cupriferous basic rocks is predisposed to a large extent by enigmatic structural features locally referred to as steep structures. The most common manifestation of steep structure deformation is typically a narrow antiformal linear feature along which continuity of the country rocks has been interrupted by piercement folding and shearing. In places, pipelike bodies of megabreccia occur along steep structures, and also act as hosts to the basic rock. Areas of steep structure are thus prime exploration targets, due to their close spatial association with the cupriferous basic rocks. Exploration techiques employed in the Okiep Copper District in~ elude regional and detailed geological mapping, geophysical surveys utilizing magnetic, gravimetric and electrical methods, as well as limited application of soil and stream-sediment geochemistry. Final evaluation is by surface and underground diamond drilling. Exploration has to date discovered 18 new mines with individual ore reserves ranging from 200 000 to 37 000 000 tonnes. All are underground operations, and the sub-level open stoping method of mining is standard.
- Full Text:
- Date Issued: 1981
- Authors: Gadd-Claxton, D L
- Date: 1981 , 2013-04-04
- Subjects: Geology, Economic -- South Africa -- Okiep , Copper ores -- South Africa -- Okiep , Okiep (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4923 , http://hdl.handle.net/10962/d1004507 , Geology, Economic -- South Africa -- Okiep , Copper ores -- South Africa -- Okiep , Okiep (South Africa)
- Description: The Okiep Copper District situated in the north-western Cape Province, covers some 3 000 km and is the oldest mining area in the Republic of South Africa. The O'okiep Copper Company Limited commenced production in 1940 with a proven ore reserve of 9 million tons at 2,45 % cu. Production since 1940 and present ore reserves total some 93 million tonnes at 1,08 % Cu. The rocks comprising the Okiep Copper District are of Proterozoic age and have been subdivided into a meta-volcanosedimentary succession, intruded by various sub-horizontally emplaced granitoid intrusions. The various intrusions occurred at different stages relative to the main structural and metamorphic events. The copper deposits are confined to basic rocks which are the youngest major group of intrusives in the District. They occur as swarms of generally easterly-trending, steep northdipping, irregular dyke-like bodies consisting of diorite, anorthosite and norite. The dominant silicate constituents are andesite ranging to labradorite, hypersthene, biotite and phlogopite. Copper sulphides are preferentially associated with the more basic varieties. The copper sulphides are mainly chalcopyrite, bornite and subsidiary chalcocite. The copper content of the basic rocks is erratic ranging over small distances from a mere trace to several percent. Emplacement of the cupriferous basic rocks is predisposed to a large extent by enigmatic structural features locally referred to as steep structures. The most common manifestation of steep structure deformation is typically a narrow antiformal linear feature along which continuity of the country rocks has been interrupted by piercement folding and shearing. In places, pipelike bodies of megabreccia occur along steep structures, and also act as hosts to the basic rock. Areas of steep structure are thus prime exploration targets, due to their close spatial association with the cupriferous basic rocks. Exploration techiques employed in the Okiep Copper District in~ elude regional and detailed geological mapping, geophysical surveys utilizing magnetic, gravimetric and electrical methods, as well as limited application of soil and stream-sediment geochemistry. Final evaluation is by surface and underground diamond drilling. Exploration has to date discovered 18 new mines with individual ore reserves ranging from 200 000 to 37 000 000 tonnes. All are underground operations, and the sub-level open stoping method of mining is standard.
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- Date Issued: 1981
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