A biological assessment of the Cape knifejaw (Oplegnathus conwayi) an endemic South African teleost
- Authors: Foster, Ryan Matthew
- Date: 2021-10-29
- Subjects: Perciformes South Africa , Osteichthyes South Africa , Fisheries South Africa , Perciformes Growth , Perciformes Age , Perciformes Reproduction , Sampling Citizen participation , Cape knifejaw (Oplegnathus conwayi)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191057 , vital:45054
- Description: The South African spearfishery forms a small component of South Africa’s complex coastal fishery. Although the smallest, this fishery sector has the largest proportion of data deficient species, and as a consequence is poorly managed. Oplegnathus conwayi (Cape knifejaw) is an example of one of these species for which there is very little and outdated biological and ecological data. This species is among the top target species by recreational spearfishers in South Africa. This thesis aimed to improve our socio-ecological knowledge of the South African spearfishery through the collection of biological and Fishers’ Ecological Knowledge (FEK) information on Oplegnathus conwayi, and human dimension information on the South African spearfishery. Monthly biological samples were collected through routine sampling (spearfishing) and augmented by recreational spearfishers. A total of 254 fish were collected from the warm-temperate coastal zone (East London – Cape Agulhas), 28 from the sub-tropical zone (Durban – East London) and 23 from the cool-temperate zone (Cape Agulhas – Cape Point). The results indicated that Oplegnathus conwayi is a slow-growing species, with a maximum recorded age of 27 years. The population sex ratio was skewed, with males dominant in the population (1M:0.6F). The length- and age-frequency distributions were, however, similar for both sexes. No significant differences were observed between male and female growth (LRT, p > 0.05), with the overall population growth curve being best described as L(t) = 697.15(1-e-0.06(t-6.30)). Males matured at a slightly larger size than females, however, no significant differences were observed (LRT, p > 0.05). The length- and age- at-50% maturity was 330 mm (FL) and 5.73 years for the full population, respectively. Histological analyses showed that Oplegnathus conwayi are asynchronous spawners with a gonochoristic reproductive style. Macroscopic staging and gonadosomatic index results indicated a protracted spawning season for Oplegnathus conwayi, with a peak in spring. A survey was designed and disseminated to collect FEK on the biology and population status of Oplegnathus conwayi and human dimension information on South Africa’s spearfishery. A total of 103 survey responses were received, of which 94 were regarded as specialised (spearfishers who had greater experience, skill and avidity, and maintained spearfishing as an important component of their lifestyle) spearfishers. Based on the responses of the specialist spearfishers, the top four main species caught by spearfishers from this survey were Seriola lalandi (13.9%), Pachymetopon grande (11.7%), Oplegnathus conwayi (11.4%) and Sparodon durbanensis (11%), and the majority of respondents indicated that there had been no changes in abundance, size and catches of these species in the years that they had been spearfishing. Respondents indicated that Oplegnathus conwayi are most commonly targeted in the Eastern Cape and are found at depths of up to 40 m. Respondents also indicated that there may be a seasonal onshore (Summer/Winter) and offshore (Summer/Winter) migration with year-round spawning and a peak in November, December and January. The incorporation of spearfishers into the data collection, both through the collection of specimens and their FEK, was beneficial to this study. Besides providing samples from a broader geographical range than the primary collection area, the collaboration with spearfishers has promoted the inclusion of this group into the management system. The findings of this study also suggest that FEK data can be more reliable if the concept of recreational specialisation is incorporated into data collection. While the FEK suggested that the population was stable, a stock assessment is necessary to fully understand the population status and implement management strategies. Nevertheless, the key life history characteristics (slow growth and late maturation) observed in this study are characteristic of species that is vulnerable to overexploitation, and thus the precautionary approach should be applied. The reproductive information collected in this study has provided information for the implementation of an appropriate size limit regulation for Oplegnathus conwayi. Here, a minimum size limit of 400 mm TL, which corresponds approximately with the length-at-50% maturity of 330 mm FL, would be appropriate to allow fish to mature and spawn, and reduce the likelihood of recruitment overfishing. Reduction in the bag limit from five to two fish per person per day may also be appropriate as a precautionary measure until a stock assessment has been completed. Finally, the incorporation of stakeholder into biological collection and the use of FEK may be a useful approach for other data deficient species and in countries with limited resources for ecological research. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Foster, Ryan Matthew
- Date: 2021-10-29
- Subjects: Perciformes South Africa , Osteichthyes South Africa , Fisheries South Africa , Perciformes Growth , Perciformes Age , Perciformes Reproduction , Sampling Citizen participation , Cape knifejaw (Oplegnathus conwayi)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191057 , vital:45054
- Description: The South African spearfishery forms a small component of South Africa’s complex coastal fishery. Although the smallest, this fishery sector has the largest proportion of data deficient species, and as a consequence is poorly managed. Oplegnathus conwayi (Cape knifejaw) is an example of one of these species for which there is very little and outdated biological and ecological data. This species is among the top target species by recreational spearfishers in South Africa. This thesis aimed to improve our socio-ecological knowledge of the South African spearfishery through the collection of biological and Fishers’ Ecological Knowledge (FEK) information on Oplegnathus conwayi, and human dimension information on the South African spearfishery. Monthly biological samples were collected through routine sampling (spearfishing) and augmented by recreational spearfishers. A total of 254 fish were collected from the warm-temperate coastal zone (East London – Cape Agulhas), 28 from the sub-tropical zone (Durban – East London) and 23 from the cool-temperate zone (Cape Agulhas – Cape Point). The results indicated that Oplegnathus conwayi is a slow-growing species, with a maximum recorded age of 27 years. The population sex ratio was skewed, with males dominant in the population (1M:0.6F). The length- and age-frequency distributions were, however, similar for both sexes. No significant differences were observed between male and female growth (LRT, p > 0.05), with the overall population growth curve being best described as L(t) = 697.15(1-e-0.06(t-6.30)). Males matured at a slightly larger size than females, however, no significant differences were observed (LRT, p > 0.05). The length- and age- at-50% maturity was 330 mm (FL) and 5.73 years for the full population, respectively. Histological analyses showed that Oplegnathus conwayi are asynchronous spawners with a gonochoristic reproductive style. Macroscopic staging and gonadosomatic index results indicated a protracted spawning season for Oplegnathus conwayi, with a peak in spring. A survey was designed and disseminated to collect FEK on the biology and population status of Oplegnathus conwayi and human dimension information on South Africa’s spearfishery. A total of 103 survey responses were received, of which 94 were regarded as specialised (spearfishers who had greater experience, skill and avidity, and maintained spearfishing as an important component of their lifestyle) spearfishers. Based on the responses of the specialist spearfishers, the top four main species caught by spearfishers from this survey were Seriola lalandi (13.9%), Pachymetopon grande (11.7%), Oplegnathus conwayi (11.4%) and Sparodon durbanensis (11%), and the majority of respondents indicated that there had been no changes in abundance, size and catches of these species in the years that they had been spearfishing. Respondents indicated that Oplegnathus conwayi are most commonly targeted in the Eastern Cape and are found at depths of up to 40 m. Respondents also indicated that there may be a seasonal onshore (Summer/Winter) and offshore (Summer/Winter) migration with year-round spawning and a peak in November, December and January. The incorporation of spearfishers into the data collection, both through the collection of specimens and their FEK, was beneficial to this study. Besides providing samples from a broader geographical range than the primary collection area, the collaboration with spearfishers has promoted the inclusion of this group into the management system. The findings of this study also suggest that FEK data can be more reliable if the concept of recreational specialisation is incorporated into data collection. While the FEK suggested that the population was stable, a stock assessment is necessary to fully understand the population status and implement management strategies. Nevertheless, the key life history characteristics (slow growth and late maturation) observed in this study are characteristic of species that is vulnerable to overexploitation, and thus the precautionary approach should be applied. The reproductive information collected in this study has provided information for the implementation of an appropriate size limit regulation for Oplegnathus conwayi. Here, a minimum size limit of 400 mm TL, which corresponds approximately with the length-at-50% maturity of 330 mm FL, would be appropriate to allow fish to mature and spawn, and reduce the likelihood of recruitment overfishing. Reduction in the bag limit from five to two fish per person per day may also be appropriate as a precautionary measure until a stock assessment has been completed. Finally, the incorporation of stakeholder into biological collection and the use of FEK may be a useful approach for other data deficient species and in countries with limited resources for ecological research. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Baseline description of the Benthic Biotopes for two Long-Term Ecological Research (LTER) stations in Algoa Bay, Agulhas ecoregion, South Africa
- Authors: Parker-Nance, Shirley
- Date: 2021-10-29
- Subjects: Benthic ecology South Africa Algoa Bay , Long-Term Ecological Research Program , Marine invertebrates South Africa Algoa Bay , Reef ecology South Africa Algoa Bay , Coastal zone management South Africa Algoa Bay , Reef fishes South Africa Algoa Bay , Ecological mapping South Africa Algoa Bay
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191680 , vital:45147 , 10.21504/10962/191680
- Description: Shallow coastal marine ecosystems provide important resources to society but are increasingly under threat from anthropogenic impacts. These systems form an interface between land and sea, providing valuable resources. Global environmental change, overexploitation, habitat transformation, pollution and policies aimed at short-term socio-economic gains are driving the loss of natural resources, productivity and biodiversity. Consequently, a comprehensive and holistic understanding of the current and future states of marine ecosystems is essential. This requires insight into the processes involved in maintaining genetic, species, habitat, community and biotope diversity at an ecosystem level. An understanding of ecosystem processes and the ability to detect changes in biodiversity, biotopes, seascape composition and ecosystem functioning require observation made over time and space. In response to this need, Long-Term Ecological Research (LTER) programmes such as those established by the South African Environmental Observation Network (SAEON) supported by the Department of Science and Innovation’s (DSI) Shallow Marine and Coastal Research Infrastructure (SMCRI) collect long–term observational data from different environments and systems. This study aimed to evaluate data collected as part of the developmental phase of a newly established benthic research platform. The datasets constructed are used to develop a baseline description of the benthic biotopes of two study areas within Algoa Bay. It aimed to gain insight into the feasibility of the methods used and the value of the data and derived essential biological variables (EVB). Assessing the sustainability of the programme over time was done through a practical evaluation of the methodology to be used and the technical feasibility of data collection and analysis. It furthermore aimed to assess the data usefulness in describing biodiversity at various scales and its sensitivity in reporting change. This pilot study provides valuable insight into data collection methodologies and introduces new sampling platforms. The baseline dataset consisted of data collected during the first 18 months of the SAEON Benthic Ecosystem Long-Term Ecological Research (BELTER) platform in Algoa Bay, Agulhas ecoregion, Western Indian Ocean, South Africa. This comprised of the collection of images for 150 m2 of the researched benthic seascape and 306 stereo video data streams. The 77 760 point dataset allowed the identification of 12 substrate types, 7 biotopes, 44 sub-biotope units, 377 sessile and sedentary benthic species and 51 ichthyofauna species. The described habitat and benthic communities and the defined benthic biotopes allowed for the assessment of biotope heterogeneity and the construction of a provisional distribution map for the broader biotopes. This work includes a study into the infra- and supra-benthic ichthyofauna associated with the defined biotopes and investigates the role habitat and benthic communities play in the distribution of these fish 3 assemblages. Lastly, it assesses the value of morphological traits and diversity indices for describing and comparing abiotic and biotic components of observed systems within the shallow coastal marine seascape. This study shows that species composition differs significantly between biotopes with habitat type playing a key role in the composition of the benthos. Substrate type, consolidated or unconsolidated, depth and the composition of the soft sediment is the most important determining factors. The White Sands Reef station has a higher species diversity than the St Croix Island Complex station with a higher percentage cover associated with the hard substrate. The dissimilarity between biotopes and communities are generally high although similarity within the biotopes or communities was found to be relatively low. This was considered indicative of high heterogeneity within the biotopes and a patch or mosaic-like distribution of communities within the broader biotope. A fine-scale a posteriori analysis of the data collected confirmed the high heterogeneous nature of both habitat and communities within the broader biotope. The description of the abiotic and biotic variables resulted in the identification of a diverse suite of biotope subunits. The character of the biotope hinges not only on the composition of the substrate and biota present but the contribution of smaller distinct biotopes subunits, their distribution and representation within broader biotopes and the degree these are shared with other broader biotopes. The distribution of these biotope units at different scales is believed to be important in understanding inherent diversity, niche partitioning and connectivity within a highly heterogeneous seascape. Ichthyofauna associated with the broader biotopes were indicative of the substrate type. Low profile reef systems with interspaced sandy stretches supported both reef fish and those typically associated with sandy substrates. Benthic biotopes associated characteristically with higher profile reef systems and less sand or soft sediment were mainly utilized by reef-associated fish species. Substrate type, depth and seasonality were found to be important factors in the observed composition and distribution of ichthyofauna over the seascape. Although fish species were found to have a wide distribution and made use of multiple biotopes the average abundance of the species within the observed assemblages differed. Analysis of ichthyofauna species composition indicated that observed fish assemblages were homogeneous within five of the seven biotopes. Broader biotopes that were found to be significantly different between sample locations are characterised by a diverse complement of biotope subunits and are highly heterogeneous. Traits and diversity indices are important tools for assessing and comparing different systems within the seascape, both spatially and temporally. The classification of the biota into broader phylogenetic groups indicated a significant difference between biotopes. This is especially useful when detailed 4 analysis or species identification is not possible or the skill set is not available. Morphological traits included in this study informed on the physical structure of the communities present and in combination with substrate type provided insight into the three-dimensional structure of the biotope. Species diversity, abundance, density estimates and the Shannon-Weiner diversity index were found to be the most useful diversity indices characterising and comparing biotopes. This was less so for ichthyofauna. Significant differences in the number of species observed were evident only between consolidated and unconsolidated dominated substrates. Although there was no significant difference in the number of individuals observed, both the Shannon-Weiner and Simpson Diversity indices were able to highlight differences in the fish assemblages observed for the different biotopes. The data collected, although permitting a comprehensive baseline assessment of the benthic environment for two research stations within the SAEON Algoa Bay LTER Sentinel Site, is temporally limited. The ichthyofauna dataset used was small and it is understood that the addition of length-frequency analysis of observed ichthyofauna will benefit our understanding of the biotope use by infra- and supra-benthic fish species over their life history within the larger seascape. Seasonal differences were evident and it is expected that datasets spanning several years, including LTER stations within different marine ecosystems types, will provide valuable insights on system dynamics in the short and long term both spatially and temporally. This study is the first attempt to evaluate the methodology developed and data collected in the South African Environmental Observation Network’s, Elwandle Coastal Node as part of the Shallow Marine and Coastal Research Infrastructure Benthic Ecosystem Long-Term Ecological Research (BELTER) platform. Newly designed and developed sample equipment and a sampling regime allowed for the collection of data on a long-term basis. The study was successful in the description of the biotope and biotope subunits for two research stations in Algoa Bay. It permitted the construction of comprehensive species lists for both benthic sessile and sedentary biota and the associated ichthyofauna. The subset of data used was successful in reporting on both spatial and temporal change. This work demonstrates that in the absence of detailed species identifications, traits may be used to describe habitat and community structure and report on abiotic and biotic biotope characteristics. This study furthermore allowed for the comparison of a comprehensive suite of diversity indices highlighting indices that may be especially useful in routine BELTER reporting. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Parker-Nance, Shirley
- Date: 2021-10-29
- Subjects: Benthic ecology South Africa Algoa Bay , Long-Term Ecological Research Program , Marine invertebrates South Africa Algoa Bay , Reef ecology South Africa Algoa Bay , Coastal zone management South Africa Algoa Bay , Reef fishes South Africa Algoa Bay , Ecological mapping South Africa Algoa Bay
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191680 , vital:45147 , 10.21504/10962/191680
- Description: Shallow coastal marine ecosystems provide important resources to society but are increasingly under threat from anthropogenic impacts. These systems form an interface between land and sea, providing valuable resources. Global environmental change, overexploitation, habitat transformation, pollution and policies aimed at short-term socio-economic gains are driving the loss of natural resources, productivity and biodiversity. Consequently, a comprehensive and holistic understanding of the current and future states of marine ecosystems is essential. This requires insight into the processes involved in maintaining genetic, species, habitat, community and biotope diversity at an ecosystem level. An understanding of ecosystem processes and the ability to detect changes in biodiversity, biotopes, seascape composition and ecosystem functioning require observation made over time and space. In response to this need, Long-Term Ecological Research (LTER) programmes such as those established by the South African Environmental Observation Network (SAEON) supported by the Department of Science and Innovation’s (DSI) Shallow Marine and Coastal Research Infrastructure (SMCRI) collect long–term observational data from different environments and systems. This study aimed to evaluate data collected as part of the developmental phase of a newly established benthic research platform. The datasets constructed are used to develop a baseline description of the benthic biotopes of two study areas within Algoa Bay. It aimed to gain insight into the feasibility of the methods used and the value of the data and derived essential biological variables (EVB). Assessing the sustainability of the programme over time was done through a practical evaluation of the methodology to be used and the technical feasibility of data collection and analysis. It furthermore aimed to assess the data usefulness in describing biodiversity at various scales and its sensitivity in reporting change. This pilot study provides valuable insight into data collection methodologies and introduces new sampling platforms. The baseline dataset consisted of data collected during the first 18 months of the SAEON Benthic Ecosystem Long-Term Ecological Research (BELTER) platform in Algoa Bay, Agulhas ecoregion, Western Indian Ocean, South Africa. This comprised of the collection of images for 150 m2 of the researched benthic seascape and 306 stereo video data streams. The 77 760 point dataset allowed the identification of 12 substrate types, 7 biotopes, 44 sub-biotope units, 377 sessile and sedentary benthic species and 51 ichthyofauna species. The described habitat and benthic communities and the defined benthic biotopes allowed for the assessment of biotope heterogeneity and the construction of a provisional distribution map for the broader biotopes. This work includes a study into the infra- and supra-benthic ichthyofauna associated with the defined biotopes and investigates the role habitat and benthic communities play in the distribution of these fish 3 assemblages. Lastly, it assesses the value of morphological traits and diversity indices for describing and comparing abiotic and biotic components of observed systems within the shallow coastal marine seascape. This study shows that species composition differs significantly between biotopes with habitat type playing a key role in the composition of the benthos. Substrate type, consolidated or unconsolidated, depth and the composition of the soft sediment is the most important determining factors. The White Sands Reef station has a higher species diversity than the St Croix Island Complex station with a higher percentage cover associated with the hard substrate. The dissimilarity between biotopes and communities are generally high although similarity within the biotopes or communities was found to be relatively low. This was considered indicative of high heterogeneity within the biotopes and a patch or mosaic-like distribution of communities within the broader biotope. A fine-scale a posteriori analysis of the data collected confirmed the high heterogeneous nature of both habitat and communities within the broader biotope. The description of the abiotic and biotic variables resulted in the identification of a diverse suite of biotope subunits. The character of the biotope hinges not only on the composition of the substrate and biota present but the contribution of smaller distinct biotopes subunits, their distribution and representation within broader biotopes and the degree these are shared with other broader biotopes. The distribution of these biotope units at different scales is believed to be important in understanding inherent diversity, niche partitioning and connectivity within a highly heterogeneous seascape. Ichthyofauna associated with the broader biotopes were indicative of the substrate type. Low profile reef systems with interspaced sandy stretches supported both reef fish and those typically associated with sandy substrates. Benthic biotopes associated characteristically with higher profile reef systems and less sand or soft sediment were mainly utilized by reef-associated fish species. Substrate type, depth and seasonality were found to be important factors in the observed composition and distribution of ichthyofauna over the seascape. Although fish species were found to have a wide distribution and made use of multiple biotopes the average abundance of the species within the observed assemblages differed. Analysis of ichthyofauna species composition indicated that observed fish assemblages were homogeneous within five of the seven biotopes. Broader biotopes that were found to be significantly different between sample locations are characterised by a diverse complement of biotope subunits and are highly heterogeneous. Traits and diversity indices are important tools for assessing and comparing different systems within the seascape, both spatially and temporally. The classification of the biota into broader phylogenetic groups indicated a significant difference between biotopes. This is especially useful when detailed 4 analysis or species identification is not possible or the skill set is not available. Morphological traits included in this study informed on the physical structure of the communities present and in combination with substrate type provided insight into the three-dimensional structure of the biotope. Species diversity, abundance, density estimates and the Shannon-Weiner diversity index were found to be the most useful diversity indices characterising and comparing biotopes. This was less so for ichthyofauna. Significant differences in the number of species observed were evident only between consolidated and unconsolidated dominated substrates. Although there was no significant difference in the number of individuals observed, both the Shannon-Weiner and Simpson Diversity indices were able to highlight differences in the fish assemblages observed for the different biotopes. The data collected, although permitting a comprehensive baseline assessment of the benthic environment for two research stations within the SAEON Algoa Bay LTER Sentinel Site, is temporally limited. The ichthyofauna dataset used was small and it is understood that the addition of length-frequency analysis of observed ichthyofauna will benefit our understanding of the biotope use by infra- and supra-benthic fish species over their life history within the larger seascape. Seasonal differences were evident and it is expected that datasets spanning several years, including LTER stations within different marine ecosystems types, will provide valuable insights on system dynamics in the short and long term both spatially and temporally. This study is the first attempt to evaluate the methodology developed and data collected in the South African Environmental Observation Network’s, Elwandle Coastal Node as part of the Shallow Marine and Coastal Research Infrastructure Benthic Ecosystem Long-Term Ecological Research (BELTER) platform. Newly designed and developed sample equipment and a sampling regime allowed for the collection of data on a long-term basis. The study was successful in the description of the biotope and biotope subunits for two research stations in Algoa Bay. It permitted the construction of comprehensive species lists for both benthic sessile and sedentary biota and the associated ichthyofauna. The subset of data used was successful in reporting on both spatial and temporal change. This work demonstrates that in the absence of detailed species identifications, traits may be used to describe habitat and community structure and report on abiotic and biotic biotope characteristics. This study furthermore allowed for the comparison of a comprehensive suite of diversity indices highlighting indices that may be especially useful in routine BELTER reporting. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Evaluating and predicting impacts of Australian redclaw crayfish Cherax quadricarinatus and Louisiana red swamp crayfish Procambarus clarkii invasions
- Madzivanzira, Takudzwa Comfort
- Authors: Madzivanzira, Takudzwa Comfort
- Date: 2021-10-29
- Subjects: Cherax Africa , Procambarus clarkii Africa , Freshwater crabs Africa , Crayfish Zambezi River , Crayfish Food Zambezi River , Aquatic biodiversity Africa , Conservation biology Zambezi River , Fishing Catch effort Africa , Introduced freshwater organisms Africa , Fish populations Africa , Functional response (FR)
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191137 , vital:45064 , 10.21504/10962/191137
- Description: Freshwater crayfish have become one of the most widely introduced freshwater taxa globally. Crayfish introductions have not spared the African continent, which, apart from Madagascar, is naturally devoid of native freshwater crayfish. These introductions are of concern because invasive crayfish have generally been shown to cause strong impacts on recipient ecosystems outside Africa. This study therefore set out to compile up-to-date information regarding crayfish introductions in Africa, their pathways and distributions and to improve our understanding of the nature and magnitude of their environmental impacts. A systematic review revealed that nine crayfish species have been introduced into the continent with five of those, Astacus astacus, Cherax quadricarinatus, Faxonius limosus, Procambarus clarkii and Procambarus virginalis, having established naturalised populations in fourteen African countries (Chapter 2). The main driver of these crayfish introductions was to provide socio-economic benefits but there is limited evidence of success. The thesis further documents attempts made to address crayfish knowledge gaps in Africa, including standardisation of C. quadricarinatus sampling gear (Chapter 3), determination of the distribution of C. quadricarinatus in the recently invaded Upper Zambezi Basin (Chapter 4), and predicting ecological and socioeconomic impacts of two crayfish species that are spreading rapidly in Southern Africa, namely, C. quadricarinatus and P. clarkii (Chapters 5 – 8). To standardise C. quadricarinatus sampling methods in Africa, two methods used in Southern Africa were compared and the Promar® collapsible trap baited with dry pellets was recommended as the best approach for C. quadricarinatus abundance studies due to the high catch per unit effort (CPUE), probability of capture and the suitability of dry dog food as a standard bait. This standard approach was used for crayfish surveys in the Zambezi Basin to comprehensively determine the spread and establishment of C. quadricarinatus across the basin. The establishment of C. quadricarinatus in the Barotse Floodplain, Upper Zambezi Floodplains freshwater ecoregion was confirmed. Although the probability of capture and catch per unit effort (CPUE) of C. quadricarinatus in the Barotse floodplain were similar to that of older invasions in the basin (Lake Kariba and Kafue River), morphometric differences among C. quadricarinatus populations sampled from these invaded regions were detected. Although crayfish were not detected in other regions, for example, the Okavango Floodplains ecoregions, C. quadricarinatus have the potential to spread at a downstream and upstream rate of 49 and 12 km·year-1, impacting native biota therein. To evaluate the potential for ecological impacts, the consumer-resource dynamics of C. quadricarinatus and P. clarkii were described in comparison to a native trophic analogue, the freshwater crab of the Potamonautes genus, preying on various native taxa ubiquitous to African aquatic and terrestrial ecosystems. The use of functional response (FR) and consumption experiments in this study showed the potential impacts of the two crayfish species on native resources and on resources that support livelihoods in invaded ecosystems. This in most cases was a result of their high attack parameter, which also resulted in high functional responses ratios (FRRs) compared to native crabs. The crayfish FR, FRRs and consumption rates were mostly enhanced under the high temperature treatments. The FRs and consumption results were then combined with the field biomasses of crayfish and crabs to calculate the relative impact potential (RIP) to successfully predict the degree of impact caused by crayfish species relative to crabs. Crayfish species consistently displayed RIP scores > 1 relative to the native crab irrespective of region, which were higher for the summer than the winter season, suggesting greater impact of the invaders compared to the native species. This study further estimated the socioeconomic losses due to catch spoilage by C. quadricarinatus which are up to 1500 t per year in the invaded Kafue River Basin, which translates to an annual income loss of US$ 2 million. Information provided in this study is vital for conservation management and to compel policymakers to develop appropriate conservation management tools within regulatory frameworks, which could stop or minimise the spread of crayfish species and protect Africa from further losing aquatic biodiversity. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Madzivanzira, Takudzwa Comfort
- Date: 2021-10-29
- Subjects: Cherax Africa , Procambarus clarkii Africa , Freshwater crabs Africa , Crayfish Zambezi River , Crayfish Food Zambezi River , Aquatic biodiversity Africa , Conservation biology Zambezi River , Fishing Catch effort Africa , Introduced freshwater organisms Africa , Fish populations Africa , Functional response (FR)
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191137 , vital:45064 , 10.21504/10962/191137
- Description: Freshwater crayfish have become one of the most widely introduced freshwater taxa globally. Crayfish introductions have not spared the African continent, which, apart from Madagascar, is naturally devoid of native freshwater crayfish. These introductions are of concern because invasive crayfish have generally been shown to cause strong impacts on recipient ecosystems outside Africa. This study therefore set out to compile up-to-date information regarding crayfish introductions in Africa, their pathways and distributions and to improve our understanding of the nature and magnitude of their environmental impacts. A systematic review revealed that nine crayfish species have been introduced into the continent with five of those, Astacus astacus, Cherax quadricarinatus, Faxonius limosus, Procambarus clarkii and Procambarus virginalis, having established naturalised populations in fourteen African countries (Chapter 2). The main driver of these crayfish introductions was to provide socio-economic benefits but there is limited evidence of success. The thesis further documents attempts made to address crayfish knowledge gaps in Africa, including standardisation of C. quadricarinatus sampling gear (Chapter 3), determination of the distribution of C. quadricarinatus in the recently invaded Upper Zambezi Basin (Chapter 4), and predicting ecological and socioeconomic impacts of two crayfish species that are spreading rapidly in Southern Africa, namely, C. quadricarinatus and P. clarkii (Chapters 5 – 8). To standardise C. quadricarinatus sampling methods in Africa, two methods used in Southern Africa were compared and the Promar® collapsible trap baited with dry pellets was recommended as the best approach for C. quadricarinatus abundance studies due to the high catch per unit effort (CPUE), probability of capture and the suitability of dry dog food as a standard bait. This standard approach was used for crayfish surveys in the Zambezi Basin to comprehensively determine the spread and establishment of C. quadricarinatus across the basin. The establishment of C. quadricarinatus in the Barotse Floodplain, Upper Zambezi Floodplains freshwater ecoregion was confirmed. Although the probability of capture and catch per unit effort (CPUE) of C. quadricarinatus in the Barotse floodplain were similar to that of older invasions in the basin (Lake Kariba and Kafue River), morphometric differences among C. quadricarinatus populations sampled from these invaded regions were detected. Although crayfish were not detected in other regions, for example, the Okavango Floodplains ecoregions, C. quadricarinatus have the potential to spread at a downstream and upstream rate of 49 and 12 km·year-1, impacting native biota therein. To evaluate the potential for ecological impacts, the consumer-resource dynamics of C. quadricarinatus and P. clarkii were described in comparison to a native trophic analogue, the freshwater crab of the Potamonautes genus, preying on various native taxa ubiquitous to African aquatic and terrestrial ecosystems. The use of functional response (FR) and consumption experiments in this study showed the potential impacts of the two crayfish species on native resources and on resources that support livelihoods in invaded ecosystems. This in most cases was a result of their high attack parameter, which also resulted in high functional responses ratios (FRRs) compared to native crabs. The crayfish FR, FRRs and consumption rates were mostly enhanced under the high temperature treatments. The FRs and consumption results were then combined with the field biomasses of crayfish and crabs to calculate the relative impact potential (RIP) to successfully predict the degree of impact caused by crayfish species relative to crabs. Crayfish species consistently displayed RIP scores > 1 relative to the native crab irrespective of region, which were higher for the summer than the winter season, suggesting greater impact of the invaders compared to the native species. This study further estimated the socioeconomic losses due to catch spoilage by C. quadricarinatus which are up to 1500 t per year in the invaded Kafue River Basin, which translates to an annual income loss of US$ 2 million. Information provided in this study is vital for conservation management and to compel policymakers to develop appropriate conservation management tools within regulatory frameworks, which could stop or minimise the spread of crayfish species and protect Africa from further losing aquatic biodiversity. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Mitigating salt accumulation in recycled brewery effluent through the integration of water treatment, agriculture and aquaculture
- Authors: Mabasa, Nyiko Charity
- Date: 2021-10-29
- Subjects: Brewery waste South Africa Eastern Cape , Recycling (Waste, etc.) South Africa Eastern Cape , Water reuse South Africa Eastern Cape , Irrigation South Africa Eastern Cape , Sewage Purification Anaerobic treatment , Constructed wetlands , Aquaculture
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191126 , vital:45063 , 10.21504/10962/191126
- Description: Water scarcity in South Africa, and globally, presents challenges for industries. It is imperative to develop responsible water use, such as recycling and reusing wastewater from food processing industries such as breweries. The Ibhayi Brewery (SAB Ltd) employs a combination of sustainable treatment processes that include anaerobic digestion (AD), primary facultative ponds (PFP), high rate algal ponds (HRAP) and constructed wetlands (CW) to treat brewery effluent on an experimental scale. The constituent concentrations of these experimentally treated effluents are within the ranges prescribed by local regulations to allow for potential downstream use in agriculture and aquaculture. However, the sodium content in this treated effluent, which originates from upstream cleaning agents and pH control at the onsite effluent treatment facility, is a constraint to the downstream use of brewery effluent. This study addresses the salt problem, by investigating the potential of either reducing/eliminating salt addition at source, or developing alternative techniques for downstream agriculture to mitigate the effects of salt accumulation caused by irrigation with brewery effluent. Four salt-tolerant test crops; Swiss chard (Beta vulgaris), saltbush (Atriplex nummularia), Salicornia meyeriana and sorghum (Sorghum bicolor), grew efficiently in brewery effluent irrigated soils but did not stop sodium accumulation in the growth medium. Swiss chard had the best growth with a wet biomass accumulation of 8,173 g m-2, due to the plant’s ability to tolerate saline conditions and continuous cropping. Crop rotation, to limit effects of nutrient depletion in soil, had no significant effect on plant growth suggesting soils were adequately able to provide micro-nutrients in the short-term. Prolonged irrigation with brewery effluent can lead to sodium accumulation in the soil, which was successfully controlled through the addition of soil amendments (gypsum and Trichoderma cultures). These reduced soil sodium from a potentially limiting level of 1,398 mg L-1 to the acceptable levels of 240 mg L-1 and 353 mg L-1 respectively, mainly through leaching. However only Trichoderma improved Swiss chard production to 11,238 g m-2. While crop rotation in this work did not contribute to mitigating the problem of salt accumulation, soil amended with Trichoderma appears to be a potential solution when brewery effluent is reused in agriculture. In an alternative to soil cultivation, CWs were trialled with no significant differences in the sodium concentration of brewery effluent treated along a 15 m lateral flow CW, which could be attributed to evapotranspiration. This was notably accompanied by a desirable 95.21% decrease in ammonia from inlet to outlet resulting in significant improvement in water quality for reuse in aquaculture where ammonia levels are important limiting constraints. While CWs remain a suitable brewery effluent treatment solution, this technology requires additional modelling and optimisation in order to mitigate the problem of salt accumulation in the reuse of treated brewery effluent in agriculture and aquaculture. This research demonstrates the baseline information for such modelling and optimisation. African catfish (Clarias gariepinus) grew in CW treated brewery effluent; however, this growth was moderate at 0.92% bw day-1, whereas Mozambique tilapia (Oreochromis mossambicus) were shown to be unsuited to growth in this system and lost weight with an average specific growth rate (SGR) of -0.98% bw day-1; and both fish species presenting with health related concerns. Hardy fish species such as African catfish can be cultured in brewery effluent, but with risk involved. This was a preliminary study to develop parameters for future dimensional analysis modelling to allow optimisation of the CW, based on nutrient removal rates obtained which will allow for improved downstream aquaculture by reducing or eliminating risks presented in this study. This work has also contributed to a foundation for the development of guidelines that use a risk-based approach for water use in aquaculture. Alternatives to the current in place cleaning agents were considered to mitigate the effects of salt accumulation. Sodium is introduced into the effluent via the use of sodium hydroxide and sodium chlorite for cleaning and disinfection in the brewery, as well as through effluent pH adjustment in the AD plant. The widespread use of outdated legacy cleaning systems and pH adjustment regimes is entrenched in the brewery standard operating procedures (SOP). A cost-benefit analysis (CBA) demonstrated that a change of cleaning and disinfecting regimes to hydrogen peroxide in the brewery, and magnesium hydroxide pH adjustment in the effluent treatment plant addresses the sodium issue upstream in the brewery practically eliminating sodium from the effluent. In addition, a life cycle analysis (LCA) was carried out to assess the environmental impacts associated with the alternative cleaning and pH adjustment scenarios. The LCA showed that electricity consumption during use phase of the chemicals for respective purposes, as well as their production activities were major contributors to the significant environmental impact categories that were assessed. The cleaning scenario employing the use of hydrogen peroxide for both cleaning and disinfection was found to be the most environmentally sustainable. This was attributed to the reduced number of chemicals used compared to the other cleaning scenarios. Dolomitic lime was the pH adjustment alternative with the lowest average environmental impact; but, however, had a higher impact on freshwater eutrophication which is of major concern if the effluent will be reused for irrigation. Magnesium hydroxide was therefore considered to be the better option as a sodium hydroxide alternative for pH adjustment. This mitigates salt accumulation, making treated brewery effluent suitable for reuse in high value downstream agriculture and aquaculture, while employing more environmentally sustainable technologies. Notably, this converts brewery effluent from a financial liability to Ibhayi Brewery, into a product containing water and nutrients that generate income, improve food security, and can create employment in downstream agriculture and aquaculture in a sustainable manner. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Mabasa, Nyiko Charity
- Date: 2021-10-29
- Subjects: Brewery waste South Africa Eastern Cape , Recycling (Waste, etc.) South Africa Eastern Cape , Water reuse South Africa Eastern Cape , Irrigation South Africa Eastern Cape , Sewage Purification Anaerobic treatment , Constructed wetlands , Aquaculture
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191126 , vital:45063 , 10.21504/10962/191126
- Description: Water scarcity in South Africa, and globally, presents challenges for industries. It is imperative to develop responsible water use, such as recycling and reusing wastewater from food processing industries such as breweries. The Ibhayi Brewery (SAB Ltd) employs a combination of sustainable treatment processes that include anaerobic digestion (AD), primary facultative ponds (PFP), high rate algal ponds (HRAP) and constructed wetlands (CW) to treat brewery effluent on an experimental scale. The constituent concentrations of these experimentally treated effluents are within the ranges prescribed by local regulations to allow for potential downstream use in agriculture and aquaculture. However, the sodium content in this treated effluent, which originates from upstream cleaning agents and pH control at the onsite effluent treatment facility, is a constraint to the downstream use of brewery effluent. This study addresses the salt problem, by investigating the potential of either reducing/eliminating salt addition at source, or developing alternative techniques for downstream agriculture to mitigate the effects of salt accumulation caused by irrigation with brewery effluent. Four salt-tolerant test crops; Swiss chard (Beta vulgaris), saltbush (Atriplex nummularia), Salicornia meyeriana and sorghum (Sorghum bicolor), grew efficiently in brewery effluent irrigated soils but did not stop sodium accumulation in the growth medium. Swiss chard had the best growth with a wet biomass accumulation of 8,173 g m-2, due to the plant’s ability to tolerate saline conditions and continuous cropping. Crop rotation, to limit effects of nutrient depletion in soil, had no significant effect on plant growth suggesting soils were adequately able to provide micro-nutrients in the short-term. Prolonged irrigation with brewery effluent can lead to sodium accumulation in the soil, which was successfully controlled through the addition of soil amendments (gypsum and Trichoderma cultures). These reduced soil sodium from a potentially limiting level of 1,398 mg L-1 to the acceptable levels of 240 mg L-1 and 353 mg L-1 respectively, mainly through leaching. However only Trichoderma improved Swiss chard production to 11,238 g m-2. While crop rotation in this work did not contribute to mitigating the problem of salt accumulation, soil amended with Trichoderma appears to be a potential solution when brewery effluent is reused in agriculture. In an alternative to soil cultivation, CWs were trialled with no significant differences in the sodium concentration of brewery effluent treated along a 15 m lateral flow CW, which could be attributed to evapotranspiration. This was notably accompanied by a desirable 95.21% decrease in ammonia from inlet to outlet resulting in significant improvement in water quality for reuse in aquaculture where ammonia levels are important limiting constraints. While CWs remain a suitable brewery effluent treatment solution, this technology requires additional modelling and optimisation in order to mitigate the problem of salt accumulation in the reuse of treated brewery effluent in agriculture and aquaculture. This research demonstrates the baseline information for such modelling and optimisation. African catfish (Clarias gariepinus) grew in CW treated brewery effluent; however, this growth was moderate at 0.92% bw day-1, whereas Mozambique tilapia (Oreochromis mossambicus) were shown to be unsuited to growth in this system and lost weight with an average specific growth rate (SGR) of -0.98% bw day-1; and both fish species presenting with health related concerns. Hardy fish species such as African catfish can be cultured in brewery effluent, but with risk involved. This was a preliminary study to develop parameters for future dimensional analysis modelling to allow optimisation of the CW, based on nutrient removal rates obtained which will allow for improved downstream aquaculture by reducing or eliminating risks presented in this study. This work has also contributed to a foundation for the development of guidelines that use a risk-based approach for water use in aquaculture. Alternatives to the current in place cleaning agents were considered to mitigate the effects of salt accumulation. Sodium is introduced into the effluent via the use of sodium hydroxide and sodium chlorite for cleaning and disinfection in the brewery, as well as through effluent pH adjustment in the AD plant. The widespread use of outdated legacy cleaning systems and pH adjustment regimes is entrenched in the brewery standard operating procedures (SOP). A cost-benefit analysis (CBA) demonstrated that a change of cleaning and disinfecting regimes to hydrogen peroxide in the brewery, and magnesium hydroxide pH adjustment in the effluent treatment plant addresses the sodium issue upstream in the brewery practically eliminating sodium from the effluent. In addition, a life cycle analysis (LCA) was carried out to assess the environmental impacts associated with the alternative cleaning and pH adjustment scenarios. The LCA showed that electricity consumption during use phase of the chemicals for respective purposes, as well as their production activities were major contributors to the significant environmental impact categories that were assessed. The cleaning scenario employing the use of hydrogen peroxide for both cleaning and disinfection was found to be the most environmentally sustainable. This was attributed to the reduced number of chemicals used compared to the other cleaning scenarios. Dolomitic lime was the pH adjustment alternative with the lowest average environmental impact; but, however, had a higher impact on freshwater eutrophication which is of major concern if the effluent will be reused for irrigation. Magnesium hydroxide was therefore considered to be the better option as a sodium hydroxide alternative for pH adjustment. This mitigates salt accumulation, making treated brewery effluent suitable for reuse in high value downstream agriculture and aquaculture, while employing more environmentally sustainable technologies. Notably, this converts brewery effluent from a financial liability to Ibhayi Brewery, into a product containing water and nutrients that generate income, improve food security, and can create employment in downstream agriculture and aquaculture in a sustainable manner. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Settlement and metamorphosis in the veliger larvae of the South African abalone Haliotis midae exposed to ambient grown biofilms treated with conspecific mucous
- Authors: Van Staden, Jefferson Luke
- Date: 2021-10-29
- Subjects: Haliotis midae , Biofilms , Haliotis midae Larvae Behavior , Haliotis midae Metamorphosis , Biosecurity , Aquaculture , Metamorphosis , Attachment mechanisms (Biology) , Mucous
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/192187 , vital:45203
- Description: The South African abalone, Haliotis midae, is a commercially important species of mollusc which contributes significantly to the value of the South African mariculture industry. One of the primary challenges experienced by abalone farmers is the consistent production of juvenile abalone (spat) in sufficient volumes to keep stocking farms and facilitate expansion of the industry. One of the key production bottlenecks of H. midae is achieving adequate levels of larval attachment and metamorphosis (settlement). The larvae of H. midae are settled on polycarbonate plates which have been pre-conditioned with biofilms in seawater which is pumped ashore onto farms. The seasonal variability in settlement success reported by hatchery managers in South Africa is hypothesised to be as a result of different diatom species compositions colonising the settlement plates at different times of the year, with settlement success being lowest during the winter months. The following study investigated whether the addition of conspecific mucous to biofilms could result in elevated settlement success, and whether there was potential for sterilisation of this mucous. A novel method of mucous application, spraying it onto the plates as opposed to pre-grazing, was tested in settlement assays and the trials revealed the following results: • The addition of H. midae mucous induced significantly more larvae to attach to settlement plates, when mucous was harvested around the spawning season. • Elevated attachment of larvae on mucous treated plates did not result in more post-larvae occupying the plates at the end of trials, and increased mortality is likely attributed to introduction of pathogens in conjunction with mucous. • No increase in the final proportion of settled larvae which had metamorphosed or the rate at which they metamorphosed was observed between mucous application treatments and biofilm only treatments. Subsequent trials assessed whether methods of mucous handling could reduce the biosecurity risk associated with mucous use, and so mucous was either UV irradiated or autoclaved. These trials revealed the following findings: • No difference in attachment was seen between any treatments, including the untreated mucous. This is contrary to the findings of our initial experiments and illustrates that the attachment-inducing properties within mucous may be seasonally expressed. ii • Numbers of observed larvae/post-larvae on plates applied with UV and autoclaved mucous where less stable than biofilms only, especially in the second trial, illustrating that mucous still presents a biosecurity risk even after undergoing these handling methods as it may act as a substrate on which pathogenic bacteria could colonise. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Van Staden, Jefferson Luke
- Date: 2021-10-29
- Subjects: Haliotis midae , Biofilms , Haliotis midae Larvae Behavior , Haliotis midae Metamorphosis , Biosecurity , Aquaculture , Metamorphosis , Attachment mechanisms (Biology) , Mucous
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/192187 , vital:45203
- Description: The South African abalone, Haliotis midae, is a commercially important species of mollusc which contributes significantly to the value of the South African mariculture industry. One of the primary challenges experienced by abalone farmers is the consistent production of juvenile abalone (spat) in sufficient volumes to keep stocking farms and facilitate expansion of the industry. One of the key production bottlenecks of H. midae is achieving adequate levels of larval attachment and metamorphosis (settlement). The larvae of H. midae are settled on polycarbonate plates which have been pre-conditioned with biofilms in seawater which is pumped ashore onto farms. The seasonal variability in settlement success reported by hatchery managers in South Africa is hypothesised to be as a result of different diatom species compositions colonising the settlement plates at different times of the year, with settlement success being lowest during the winter months. The following study investigated whether the addition of conspecific mucous to biofilms could result in elevated settlement success, and whether there was potential for sterilisation of this mucous. A novel method of mucous application, spraying it onto the plates as opposed to pre-grazing, was tested in settlement assays and the trials revealed the following results: • The addition of H. midae mucous induced significantly more larvae to attach to settlement plates, when mucous was harvested around the spawning season. • Elevated attachment of larvae on mucous treated plates did not result in more post-larvae occupying the plates at the end of trials, and increased mortality is likely attributed to introduction of pathogens in conjunction with mucous. • No increase in the final proportion of settled larvae which had metamorphosed or the rate at which they metamorphosed was observed between mucous application treatments and biofilm only treatments. Subsequent trials assessed whether methods of mucous handling could reduce the biosecurity risk associated with mucous use, and so mucous was either UV irradiated or autoclaved. These trials revealed the following findings: • No difference in attachment was seen between any treatments, including the untreated mucous. This is contrary to the findings of our initial experiments and illustrates that the attachment-inducing properties within mucous may be seasonally expressed. ii • Numbers of observed larvae/post-larvae on plates applied with UV and autoclaved mucous where less stable than biofilms only, especially in the second trial, illustrating that mucous still presents a biosecurity risk even after undergoing these handling methods as it may act as a substrate on which pathogenic bacteria could colonise. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Taxonomic, ecological and biogeographic re-evaluation of temperate stream fishes in Southern Africa: a case study of the enteromius anoplus complex
- Authors: Kambikambi, Manda Juliet
- Date: 2021-10-29
- Subjects: Stream ecology South Africa , Barbs (Fish) Ecology South Africa Cape Fold Belt , Barbs (Fish) Ecology South Africa Highveld (Region) , Barbs (Fish) Ecology South Africa Amathole District Municipality , Biotic communities South Africa , Fishes Classification , Cryptic species , Chubbyhead barb
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191023 , vital:45051 , 10.21504/10962/191023
- Description: Worldwide, cryptic species, which comprise two or more distinct species that are classified as one due to their morphological similarity, are more common than previously thought. In South Africa, the chubbyhead barb, Enteromius anoplus (Weber, 1897), is the most widespread freshwater fish species. The widespread occurrence of this species across different river basins raised questions on its taxonomic status due to the likely occurrence of hidden diversity. This further raised the need to evaluate the ecological patterns associated with likely occurrence of such hidden diversity. Phylogenetic analyses of the cytochrome b gene of E. anoplus populations across South Africa revealed the occurrence of four genetically distinct species. These findings supported the restoration Enteromius cernuus (Barnard 1943) stat. rev. from the Olifants River system; the restoration of Enteromius anoplus sensu stricto (Weber 1897) stat. rev. from the Gouritz River system; the redescription of Enteromius oraniensis (Barnard 1943) stat. rev. from the Orange River system; and the description of a new species, Enteromius mandelai sp. nov. from the Eastern Cape rivers. Analyses of morphometric and meristic data revealed that these species were differentiated based on barbel length and number of lateral line scales. Ecological studies on Enteromius mandelai were conducted within headwater streams of major river systems in the Eastern Cape region. These headwater streams had different catchment characteristics ranging from near-natural to anthropogenically-perturbed mainly due to agriculture-related disturbances and invasion of riparian zones by non-native plants. Stable isotope analysis provided evidence of trophic plasticity for E. mandelai across the different headwater streams. Specifically, E. mandelai exhibited large isotopic niches in agriculture-disturbed headwater streams, whereas small isotopic niches were observed in headwater streams invaded by non-native plants. Because of the evidence of trophic plasticity for E. mandelai, this study further hypothesized that this species would exhibit variable environmental niche patterns related to its distribution, abundance and the presence of contra-specifics due to different abiotic factors across its range. Enteromius mandelai was generally most abundant at sites with high total dissolved solids and sand substratum, which was characteristic of large pool habitats, and least abundant at sites with high turbidity. In the Great Fish River, E. mandelai occurred as the only species in most headwater sites, whereas in the Keiskamma and Buffalo River systems, it co-occurred with Amatolacypris trevelyani and Sandelia bainsii. Enteromius mandelai was, nevertheless, found to be ubiquitous together with having wide environmental niches, and exhibited no discernible patterns in its habitat associations. The taxonomic re-evaluation of the E. anoplus complex, which provided evidence of the existence of new species, has implications for the biogeographic zonation of the ichthyofauna of the Cape Fold Ecoregion (CFE), Amathole-Winterberg Highlands Ecoregion (AWHE) and the Southern Temperate Highveld Ecoregion (STHE). For example, the currently recognised southern limit of the STHE, which encompasses the AWHE, is based on the occurrence of E. anoplus, Enteromius pallidus and Labeo umbratus. However, evidence from this and other recent studies indicate the occurrence of either new species or distinct lineages in the southern-most section of the STHE, which is consistent with the patterns observed in the CFE. Comparison of taxonomic composition showed that species in the eastern part of the CFE were similar to species in the AWHE and the southern-most section of the STHE. Because of the close affinities among most of the new taxa in these regions, this study proposes that the current delimitation of the CFE should be reviewed by extending it to include the AWHE and sections of the STHE. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Kambikambi, Manda Juliet
- Date: 2021-10-29
- Subjects: Stream ecology South Africa , Barbs (Fish) Ecology South Africa Cape Fold Belt , Barbs (Fish) Ecology South Africa Highveld (Region) , Barbs (Fish) Ecology South Africa Amathole District Municipality , Biotic communities South Africa , Fishes Classification , Cryptic species , Chubbyhead barb
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191023 , vital:45051 , 10.21504/10962/191023
- Description: Worldwide, cryptic species, which comprise two or more distinct species that are classified as one due to their morphological similarity, are more common than previously thought. In South Africa, the chubbyhead barb, Enteromius anoplus (Weber, 1897), is the most widespread freshwater fish species. The widespread occurrence of this species across different river basins raised questions on its taxonomic status due to the likely occurrence of hidden diversity. This further raised the need to evaluate the ecological patterns associated with likely occurrence of such hidden diversity. Phylogenetic analyses of the cytochrome b gene of E. anoplus populations across South Africa revealed the occurrence of four genetically distinct species. These findings supported the restoration Enteromius cernuus (Barnard 1943) stat. rev. from the Olifants River system; the restoration of Enteromius anoplus sensu stricto (Weber 1897) stat. rev. from the Gouritz River system; the redescription of Enteromius oraniensis (Barnard 1943) stat. rev. from the Orange River system; and the description of a new species, Enteromius mandelai sp. nov. from the Eastern Cape rivers. Analyses of morphometric and meristic data revealed that these species were differentiated based on barbel length and number of lateral line scales. Ecological studies on Enteromius mandelai were conducted within headwater streams of major river systems in the Eastern Cape region. These headwater streams had different catchment characteristics ranging from near-natural to anthropogenically-perturbed mainly due to agriculture-related disturbances and invasion of riparian zones by non-native plants. Stable isotope analysis provided evidence of trophic plasticity for E. mandelai across the different headwater streams. Specifically, E. mandelai exhibited large isotopic niches in agriculture-disturbed headwater streams, whereas small isotopic niches were observed in headwater streams invaded by non-native plants. Because of the evidence of trophic plasticity for E. mandelai, this study further hypothesized that this species would exhibit variable environmental niche patterns related to its distribution, abundance and the presence of contra-specifics due to different abiotic factors across its range. Enteromius mandelai was generally most abundant at sites with high total dissolved solids and sand substratum, which was characteristic of large pool habitats, and least abundant at sites with high turbidity. In the Great Fish River, E. mandelai occurred as the only species in most headwater sites, whereas in the Keiskamma and Buffalo River systems, it co-occurred with Amatolacypris trevelyani and Sandelia bainsii. Enteromius mandelai was, nevertheless, found to be ubiquitous together with having wide environmental niches, and exhibited no discernible patterns in its habitat associations. The taxonomic re-evaluation of the E. anoplus complex, which provided evidence of the existence of new species, has implications for the biogeographic zonation of the ichthyofauna of the Cape Fold Ecoregion (CFE), Amathole-Winterberg Highlands Ecoregion (AWHE) and the Southern Temperate Highveld Ecoregion (STHE). For example, the currently recognised southern limit of the STHE, which encompasses the AWHE, is based on the occurrence of E. anoplus, Enteromius pallidus and Labeo umbratus. However, evidence from this and other recent studies indicate the occurrence of either new species or distinct lineages in the southern-most section of the STHE, which is consistent with the patterns observed in the CFE. Comparison of taxonomic composition showed that species in the eastern part of the CFE were similar to species in the AWHE and the southern-most section of the STHE. Because of the close affinities among most of the new taxa in these regions, this study proposes that the current delimitation of the CFE should be reviewed by extending it to include the AWHE and sections of the STHE. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Towards effective monitoring, control and surveillance policy and implementation in South Africa and its relevance to other Southern African States
- Authors: Fikizolo, Lisolomzi Assaph
- Date: 2021-10-29
- Subjects: Fishery management Africa, Southern , Fisheries Monitoring Africa, Southern , Fishery policy Africa, Southern , Fishery law and legislation Africa, Southern , South Africa. Fisheries Management Branch
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/190886 , vital:45038 , 10.21504/10962/190886
- Description: The responsibility of Fisheries Governance Authorities (FGAs) is to ensure that there is sustainable utilisation and exploitation of marine living resources through effective Monitoring, Control and Surveillance (MCS). MCS is a mechanism used to implement agreed policies, plans and strategies for oceans and fisheries governance, and it is key to their successful implementation. In the continent, the African Union (AU), through its agencies, economic and regional structures encourage and supports national and regional MCS programs. South Africa is a SADC coastal State with a fisheries governance branch mandated to ensure sustainable marine living resources’ utilisation with support from a national MCS program. This support depends on the effectiveness of the current national MCS organisational structure, capacity, legislative and policy framework, as well as regional cooperation. In addition to an extensive literature review, this study developed a MCS framework, following international fisheries legislation and guidelines, for testing the South African MCS’ conformity to such a model. Furthermore, Namibia and Mozambique were included as examples of SADC coastal States to determine their responsiveness to regional cooperation and coordination. Based on the framework, a questionnaire with four parts, Part A: Background Information; Part B: Evaluation of MCS Enablers; Part C: Evaluation of an MCS system process and its effectiveness – reactive approach; and Part D: - proactive approach was developed to collect information. The data was analysed, using appropriate statistical methods to determine, against set characteristics, the level of information that the government respondents could provide to the research topic, and to determine the effectiveness of the South African MCS program. Limited information from Namibia and Mozambique showed readiness in their respective MCS programs for a regional MCS integrated approach, as is the case with South Africa, but there is no serious engagement to implement any regional MCS program. Results showed that the South African MCS program's effectiveness is generally adequate, but there are challenges with planning; financial resources; MCS equipment; stakeholder engagement processes, and governance. A primary recommendation from this study was that business plans, as utilised in the private sector, should be developed by South African Fisheries Governance Authority (FGA) to address MCS governance shortcomings as revealed by this study. A reconfiguration of the MCS organisational structure to include a resource mobilisation unit is considered necessary to effect the much needed improvements. , Thesis (PhD) -- Faculty of Science, Geography, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Fikizolo, Lisolomzi Assaph
- Date: 2021-10-29
- Subjects: Fishery management Africa, Southern , Fisheries Monitoring Africa, Southern , Fishery policy Africa, Southern , Fishery law and legislation Africa, Southern , South Africa. Fisheries Management Branch
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/190886 , vital:45038 , 10.21504/10962/190886
- Description: The responsibility of Fisheries Governance Authorities (FGAs) is to ensure that there is sustainable utilisation and exploitation of marine living resources through effective Monitoring, Control and Surveillance (MCS). MCS is a mechanism used to implement agreed policies, plans and strategies for oceans and fisheries governance, and it is key to their successful implementation. In the continent, the African Union (AU), through its agencies, economic and regional structures encourage and supports national and regional MCS programs. South Africa is a SADC coastal State with a fisheries governance branch mandated to ensure sustainable marine living resources’ utilisation with support from a national MCS program. This support depends on the effectiveness of the current national MCS organisational structure, capacity, legislative and policy framework, as well as regional cooperation. In addition to an extensive literature review, this study developed a MCS framework, following international fisheries legislation and guidelines, for testing the South African MCS’ conformity to such a model. Furthermore, Namibia and Mozambique were included as examples of SADC coastal States to determine their responsiveness to regional cooperation and coordination. Based on the framework, a questionnaire with four parts, Part A: Background Information; Part B: Evaluation of MCS Enablers; Part C: Evaluation of an MCS system process and its effectiveness – reactive approach; and Part D: - proactive approach was developed to collect information. The data was analysed, using appropriate statistical methods to determine, against set characteristics, the level of information that the government respondents could provide to the research topic, and to determine the effectiveness of the South African MCS program. Limited information from Namibia and Mozambique showed readiness in their respective MCS programs for a regional MCS integrated approach, as is the case with South Africa, but there is no serious engagement to implement any regional MCS program. Results showed that the South African MCS program's effectiveness is generally adequate, but there are challenges with planning; financial resources; MCS equipment; stakeholder engagement processes, and governance. A primary recommendation from this study was that business plans, as utilised in the private sector, should be developed by South African Fisheries Governance Authority (FGA) to address MCS governance shortcomings as revealed by this study. A reconfiguration of the MCS organisational structure to include a resource mobilisation unit is considered necessary to effect the much needed improvements. , Thesis (PhD) -- Faculty of Science, Geography, 2021
- Full Text:
- Date Issued: 2021-10-29
Uncoupling the exploitation and climate change effects on the biology of Cape monkfish, Lophius vomerinus Valenciennes 1837 in Namibia
- Authors: Erasmus, Victoria Ndinelago
- Date: 2021-10-29
- Subjects: Lophius Namibia , Lophius Climatic factors Namibia , Lophius Effect of human beings on Namibia , Lophius Food Namibia , Lophius Reproduction Namibia , Lophius Age Namibia , Lophius Growth Namibia , Lophius Habitat Namibia , Lophius Conservation Namibia , Fisheries Namibia , Overfishing Namibia , Fishery management Namibia , Lophius vomerinus (Valenciennes, 1837) , Cape monkfish
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/188329 , vital:44744 , 10.21504/10962/188329
- Description: Cape monkfish, Lophius vomerinus Valenciennes 1837, has supported the Namibian fishing industry for decades, historically as by-catch and recently as a target species. This species is also an important predator in this region. With increasing levels of exploitation and unprecedented climate change, an understanding of the changes in the long-term biological parameters of this species is critical. To date, there has been a scarcity of spatio-temporal studies that have examined and compared the biological aspects of Cape monkfish in relation to climate change and exploitation pressure. Investigations into changes in feeding habits, reproduction strategy, age and growth can provide valuable information for the sustainable management and conservation of this species. This thesis aimed to improve our understanding of the impacts of exploitation and climate variability on the biological parameters of Cape monkfish in the Namibian marine waters, thereby contributing to efforts directed at sustainable harvest and management of this resource. This was achieved through temporal and spatial comparisons of feeding, reproductive scope, age and growth, and catch statistics. The study used data collected during the monkfish swept-area biomass surveys of 2001–2005 and for 2007–2018, hake (deep-water hake Merluccius paradoxus Franca 1960 and shallow-water hake M. capensis Castelnau 1861) swept-area biomass surveys of 2017 and 2019, port sampling programme data collected from April 2014 to December 2019, and monkfish commercial fishing activities collected between April 2001 and December 2019. Based on historical feeding data (1986 – 1987) and contemporary feeding data (2015-2018), Cape monkfish feeds on a variety of prey species from seven groups: Teleost, Cephalopoda, Crustacea, Echinoidea, Elasmobranchii, Gastropod and Porifera. The diet was characterised by a high prevalence of empty stomachs (43.9%), showing low feeding intensity, but most prevalent in juveniles (52.9%). Although the diet composition varied at different life stages, Teleosts (especially deep-water hake Merluccius paradoxus Franca 1960) were the main constituents of the diet for all size classes as per the Index of Relative Importance (%IRI). The results highlight the particular importance of the deep-water hake M. paradoxus (by %IRI) in the diet of Cape monkfish across all size classes. There is a clear dominance of hake in both studies, which means that any overexploitation or climate-driven population decline in hake will most likely have an impact on Cape monkfish. Feeding composition was dependent on the season (p < 0.05), with the type and quantity of prey ingested changing seasonally, showing the ability of Cape monkfish to adjust its diet, depending on possible environmental parameters which consequently influence prey availability. In general, the spatial and temporal variability of the main prey items suggests that the species is highly opportunistic with a broad trophic adaptability. Comparison of historical and contemporary stomach content data indicates that Cape monkfish appear to have changed their diet, probably reflecting the availability of forage species over time and space, possibly due to climate change, fishing pressure, or both. The broad trophic adaptability for Cape monkfish highlights their adaptive potential to increasing anthropogenic stressors such as climate change. However, the dominance of the commercially important deep-water hake, M. paradoxus, in the diet during contemporary times highlights that complex trophic interactions may play a role in altering the northern Benguela fisheries. The general male to female sex ratio was measured at 1:1.67, with significant variation across depth, size class, and year (p < 0.05). Comparison of length at 50% maturity (L50) for Cape monkfish between historical (2004–2006) and contemporary time (2015–2019) showed no significant differences in both sexes, with no significant changes in the L50 for females (χ2 = 1.53, df = 1, p = 0.2154), and males (χ2 = 0.41, df = 1, p = 0.5204) between the two periods. The monthly gonadosomatic index (GSI) showed that Cape monkfish spawn throughout the year with peaks between July and September for females and August for males, similar to those observed 20 years ago. Spawning hotspot areas were identified and were consistently located between 22⁰ and 25⁰S in deeper water (> 250 m) for the 2001–2018 time series. Comparison of the contemporary (2015–2019) proportions of developing, ripe and spent gonads to the historical study data (1996 – 2000) show minimal differences. Ripe ovaries capable of spawning (Stage IV) were dominant in July (23.8%) and August (26.2%), while ripe testes were prevalent in April (52.5%) and November (28.5%). The discovery of the veil (a gelatinous, flat ribbon structure containing individual eggs) off Namibia for the first time (during this study) is a significant because this result provides important reproduction activities information of this species, which were never recorded off Namibia. The location where the veil was discovered, off Swakopmund (22⁰30'S, 13⁰25'E), provides further evidence of the identified spawning hotspot areas, this location is also identified as a monkfish consecutive hotspot fishing area. The ages, growth rates, and length-weight relationships were compared between fish collected during monkfish commercial fishing activities between 1996 and 1998 (Period 1) and during monkfish routine monitoring surveys from 2014 to 2016 (Period 2). A total of 607 (size range: 9–96 cm total length (TL)) and 852 (size range: 9–96 cm TL) Cape monkfish were aged by reading sectioned illicia, during Periods 1 and 2, respectively. The length-weight relationships were W = 0.012L3.035 (r2 = 0.98) and W = 0.014L 2.989 (r2 = 0.98) for females and males, respectively, during Period 1, and W = 0.01L2.97 (r2 = 0.98) and W = 0.01L 3.03 (r2 = 0.98) for females and males, respectively, in Period 2. The growth of Cape monkfish (in cm) for combined sexes was described by Lt = 94(1 − e(−0.10(t−(-0.31))) in Period 1 and Lt = 98(1 − e(−0.10(t−(-0.33))) in Period 2. Females grew significantly faster during Period 1 (LRT results from Maartens et al., 1999), while male and female growth was not significantly different during Period 2 (F = 0.65, p = 0.58). There were no significant differences between the male and female growth curve in Period 2 (F = 0.65, p = 0.58). Although the growth curves are similar between Period 1 and Period 2, the larger fish are in Period 2 are lighter than those in Period 1. This finding is important to the monkfish fishing industry because fish is sold by weight. This finding may suggest that although the fish grow similarly by length, changes in the environmental conditions may have resulted in a reduced condition of the fish. In terms of mean age, the historical Period 1 had a slightly lower mean age of 4.40 compared with a mean age of 5.49 during Period 2. Slight differences were also observed in the age structure between the two periods, with 2-year-olds (20.3%) the most abundant age class in the historical period while 5-year-old fish (18.3%) were most abundant in Period 2. Although the spatial distribution of the catch was not available for Period 1, 0-year-old fish were distributed from 22⁰ to 24⁰S, and 25⁰ to 26⁰S in shallower waters of 166–290 m during Period 2. Only fish between 5 and 16 years old were found off the documented historical nursery area off 28º S. The similar growth curves and spatial overlap of nursery habitats between Period 1 and Period 2 suggest that Cape monkfish may be fairly resilient to the rapid environmental change reported in this region and to the extensive levels of exploitation for the species. However, the recent spatial shifts in the nursery areas are sensitive to disturbance and may indicate that these changes could be having an impact on the early life stages of the species. Continued monitoring may be necessary to understand the consequences of these spatial shifts for the age and growth and resilience of the species. Analysis of the overall spatial and temporal catches of monkfish (both Cape monkfish and shortspine African monkfish) off Namibia between 1998 and 2018 identified noticeable spatio-temporal trends. The pattern of fishing activities for Cape monkfish is heterogeneous, with identified ‘hotspots’ in specific areas. Of particular importance is the consecutive hotspot, between 1998 to 2018 for monkfish fishing activities between 25⁰ and 26⁰ S. The kernel density analysis indicated that the area around 24⁰S, and between 26º and 27 ⁰S, between Walvis Bay and Lüderitz, had the highest total catch densities (~300 kg/km2), suggesting that this is the core of the stock abundance. Annual monkfish catches have fluctuated since the inception of the fishery in 1994, with a drastic decline in the catch recorded after 2003 through to 2018. Generally, there has been an underutilisation of the total allowable catch (TAC) for most of the years. The decrease in catches and the underutilisation of the TAC might be indicative of the reduction in the stock abundance. However, external factors such as lack of capacity of the fishing industry and the administration can contribute to underutilisation of TAC. Basic regression analysis between total monthly catches and monthly sea surface temperature (SST) yielded low r-squared values indicate that in all three grids, only ~ 1% of the variation is explained between SST and total monkfish catches in these areas. The most prominent points to consider from this study are the results of the comparative feeding study (Chapter 3), reproductive indicators (Chapter 4) and age and growth (Chapter 5). Certainly, there have been changes in feeding, demography, and distribution of the species in the last two decades – climate-driven changes were recorded in the feeding habits of Cape monkfish, spatially and temporally – but despite the changes in prey species composition, distribution and abundance in various habits and periods, Cape monkfish was able to switch prey species, reflecting wide trophic adaptability. The dominance of M. paradoxus at all size classes in all analysed habitats is a significant result because. The peak spawning period has remained the same between July and September, as previously reported in Period 1. The consecutive spawning hotspots were identified in the areas between 22º and 25ºS. From a fisheries management perspective, the spawning ground and spawning season should be protected (by means of closure). The evidence of changes in length at 50% maturity presented in this study hints at both climate change and extensive exploitation pressure. The discovery of the veil for the first time in this study is very important; however, it might be sampling related and not driven by climate or exploitation pressure. Finally, the change in the Cape monkfish distribution discussed in Chapter 6 may be attributed to a shift in the distribution or fishing effort as a consequence of shallow water depletion. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Erasmus, Victoria Ndinelago
- Date: 2021-10-29
- Subjects: Lophius Namibia , Lophius Climatic factors Namibia , Lophius Effect of human beings on Namibia , Lophius Food Namibia , Lophius Reproduction Namibia , Lophius Age Namibia , Lophius Growth Namibia , Lophius Habitat Namibia , Lophius Conservation Namibia , Fisheries Namibia , Overfishing Namibia , Fishery management Namibia , Lophius vomerinus (Valenciennes, 1837) , Cape monkfish
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/188329 , vital:44744 , 10.21504/10962/188329
- Description: Cape monkfish, Lophius vomerinus Valenciennes 1837, has supported the Namibian fishing industry for decades, historically as by-catch and recently as a target species. This species is also an important predator in this region. With increasing levels of exploitation and unprecedented climate change, an understanding of the changes in the long-term biological parameters of this species is critical. To date, there has been a scarcity of spatio-temporal studies that have examined and compared the biological aspects of Cape monkfish in relation to climate change and exploitation pressure. Investigations into changes in feeding habits, reproduction strategy, age and growth can provide valuable information for the sustainable management and conservation of this species. This thesis aimed to improve our understanding of the impacts of exploitation and climate variability on the biological parameters of Cape monkfish in the Namibian marine waters, thereby contributing to efforts directed at sustainable harvest and management of this resource. This was achieved through temporal and spatial comparisons of feeding, reproductive scope, age and growth, and catch statistics. The study used data collected during the monkfish swept-area biomass surveys of 2001–2005 and for 2007–2018, hake (deep-water hake Merluccius paradoxus Franca 1960 and shallow-water hake M. capensis Castelnau 1861) swept-area biomass surveys of 2017 and 2019, port sampling programme data collected from April 2014 to December 2019, and monkfish commercial fishing activities collected between April 2001 and December 2019. Based on historical feeding data (1986 – 1987) and contemporary feeding data (2015-2018), Cape monkfish feeds on a variety of prey species from seven groups: Teleost, Cephalopoda, Crustacea, Echinoidea, Elasmobranchii, Gastropod and Porifera. The diet was characterised by a high prevalence of empty stomachs (43.9%), showing low feeding intensity, but most prevalent in juveniles (52.9%). Although the diet composition varied at different life stages, Teleosts (especially deep-water hake Merluccius paradoxus Franca 1960) were the main constituents of the diet for all size classes as per the Index of Relative Importance (%IRI). The results highlight the particular importance of the deep-water hake M. paradoxus (by %IRI) in the diet of Cape monkfish across all size classes. There is a clear dominance of hake in both studies, which means that any overexploitation or climate-driven population decline in hake will most likely have an impact on Cape monkfish. Feeding composition was dependent on the season (p < 0.05), with the type and quantity of prey ingested changing seasonally, showing the ability of Cape monkfish to adjust its diet, depending on possible environmental parameters which consequently influence prey availability. In general, the spatial and temporal variability of the main prey items suggests that the species is highly opportunistic with a broad trophic adaptability. Comparison of historical and contemporary stomach content data indicates that Cape monkfish appear to have changed their diet, probably reflecting the availability of forage species over time and space, possibly due to climate change, fishing pressure, or both. The broad trophic adaptability for Cape monkfish highlights their adaptive potential to increasing anthropogenic stressors such as climate change. However, the dominance of the commercially important deep-water hake, M. paradoxus, in the diet during contemporary times highlights that complex trophic interactions may play a role in altering the northern Benguela fisheries. The general male to female sex ratio was measured at 1:1.67, with significant variation across depth, size class, and year (p < 0.05). Comparison of length at 50% maturity (L50) for Cape monkfish between historical (2004–2006) and contemporary time (2015–2019) showed no significant differences in both sexes, with no significant changes in the L50 for females (χ2 = 1.53, df = 1, p = 0.2154), and males (χ2 = 0.41, df = 1, p = 0.5204) between the two periods. The monthly gonadosomatic index (GSI) showed that Cape monkfish spawn throughout the year with peaks between July and September for females and August for males, similar to those observed 20 years ago. Spawning hotspot areas were identified and were consistently located between 22⁰ and 25⁰S in deeper water (> 250 m) for the 2001–2018 time series. Comparison of the contemporary (2015–2019) proportions of developing, ripe and spent gonads to the historical study data (1996 – 2000) show minimal differences. Ripe ovaries capable of spawning (Stage IV) were dominant in July (23.8%) and August (26.2%), while ripe testes were prevalent in April (52.5%) and November (28.5%). The discovery of the veil (a gelatinous, flat ribbon structure containing individual eggs) off Namibia for the first time (during this study) is a significant because this result provides important reproduction activities information of this species, which were never recorded off Namibia. The location where the veil was discovered, off Swakopmund (22⁰30'S, 13⁰25'E), provides further evidence of the identified spawning hotspot areas, this location is also identified as a monkfish consecutive hotspot fishing area. The ages, growth rates, and length-weight relationships were compared between fish collected during monkfish commercial fishing activities between 1996 and 1998 (Period 1) and during monkfish routine monitoring surveys from 2014 to 2016 (Period 2). A total of 607 (size range: 9–96 cm total length (TL)) and 852 (size range: 9–96 cm TL) Cape monkfish were aged by reading sectioned illicia, during Periods 1 and 2, respectively. The length-weight relationships were W = 0.012L3.035 (r2 = 0.98) and W = 0.014L 2.989 (r2 = 0.98) for females and males, respectively, during Period 1, and W = 0.01L2.97 (r2 = 0.98) and W = 0.01L 3.03 (r2 = 0.98) for females and males, respectively, in Period 2. The growth of Cape monkfish (in cm) for combined sexes was described by Lt = 94(1 − e(−0.10(t−(-0.31))) in Period 1 and Lt = 98(1 − e(−0.10(t−(-0.33))) in Period 2. Females grew significantly faster during Period 1 (LRT results from Maartens et al., 1999), while male and female growth was not significantly different during Period 2 (F = 0.65, p = 0.58). There were no significant differences between the male and female growth curve in Period 2 (F = 0.65, p = 0.58). Although the growth curves are similar between Period 1 and Period 2, the larger fish are in Period 2 are lighter than those in Period 1. This finding is important to the monkfish fishing industry because fish is sold by weight. This finding may suggest that although the fish grow similarly by length, changes in the environmental conditions may have resulted in a reduced condition of the fish. In terms of mean age, the historical Period 1 had a slightly lower mean age of 4.40 compared with a mean age of 5.49 during Period 2. Slight differences were also observed in the age structure between the two periods, with 2-year-olds (20.3%) the most abundant age class in the historical period while 5-year-old fish (18.3%) were most abundant in Period 2. Although the spatial distribution of the catch was not available for Period 1, 0-year-old fish were distributed from 22⁰ to 24⁰S, and 25⁰ to 26⁰S in shallower waters of 166–290 m during Period 2. Only fish between 5 and 16 years old were found off the documented historical nursery area off 28º S. The similar growth curves and spatial overlap of nursery habitats between Period 1 and Period 2 suggest that Cape monkfish may be fairly resilient to the rapid environmental change reported in this region and to the extensive levels of exploitation for the species. However, the recent spatial shifts in the nursery areas are sensitive to disturbance and may indicate that these changes could be having an impact on the early life stages of the species. Continued monitoring may be necessary to understand the consequences of these spatial shifts for the age and growth and resilience of the species. Analysis of the overall spatial and temporal catches of monkfish (both Cape monkfish and shortspine African monkfish) off Namibia between 1998 and 2018 identified noticeable spatio-temporal trends. The pattern of fishing activities for Cape monkfish is heterogeneous, with identified ‘hotspots’ in specific areas. Of particular importance is the consecutive hotspot, between 1998 to 2018 for monkfish fishing activities between 25⁰ and 26⁰ S. The kernel density analysis indicated that the area around 24⁰S, and between 26º and 27 ⁰S, between Walvis Bay and Lüderitz, had the highest total catch densities (~300 kg/km2), suggesting that this is the core of the stock abundance. Annual monkfish catches have fluctuated since the inception of the fishery in 1994, with a drastic decline in the catch recorded after 2003 through to 2018. Generally, there has been an underutilisation of the total allowable catch (TAC) for most of the years. The decrease in catches and the underutilisation of the TAC might be indicative of the reduction in the stock abundance. However, external factors such as lack of capacity of the fishing industry and the administration can contribute to underutilisation of TAC. Basic regression analysis between total monthly catches and monthly sea surface temperature (SST) yielded low r-squared values indicate that in all three grids, only ~ 1% of the variation is explained between SST and total monkfish catches in these areas. The most prominent points to consider from this study are the results of the comparative feeding study (Chapter 3), reproductive indicators (Chapter 4) and age and growth (Chapter 5). Certainly, there have been changes in feeding, demography, and distribution of the species in the last two decades – climate-driven changes were recorded in the feeding habits of Cape monkfish, spatially and temporally – but despite the changes in prey species composition, distribution and abundance in various habits and periods, Cape monkfish was able to switch prey species, reflecting wide trophic adaptability. The dominance of M. paradoxus at all size classes in all analysed habitats is a significant result because. The peak spawning period has remained the same between July and September, as previously reported in Period 1. The consecutive spawning hotspots were identified in the areas between 22º and 25ºS. From a fisheries management perspective, the spawning ground and spawning season should be protected (by means of closure). The evidence of changes in length at 50% maturity presented in this study hints at both climate change and extensive exploitation pressure. The discovery of the veil for the first time in this study is very important; however, it might be sampling related and not driven by climate or exploitation pressure. Finally, the change in the Cape monkfish distribution discussed in Chapter 6 may be attributed to a shift in the distribution or fishing effort as a consequence of shallow water depletion. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
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