The link between behavioural plasticity and aerobic scope 1 phenotypes in predicting the survival of Chrysoblephus laticeps 2 under climate variability
- Authors: Bailey, Lauren Ashleigh
- Date: 2023-03-29
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/422606 , vital:71961 , DOI 10.21504/10962/422606
- Description: Thermal variability in the marine environment is likely to have a considerable effect on fishes as it impacts physiological performance and vital (i.e metabolism, foraging and swimming style) and non-vital (i.e. reproductive fitness) energetic processes. When fish are subjected to thermal stress, they may primarily respond by changing their behaviour. Species that have broad phenotypic behavioural plasticity (i.e. defined as the ability to adjust behavioural activity in presiding environmental conditions in order to remain within their optimal thermal range) may have a competitive advantage. Fish behavioural plasticity may take many forms. Some species may seek out thermal refugia by changing their phenology or distribution, while others alter the timing of their seasonal and spawning migrations in response to a changing environment. Although fishes can use behavioural changes to cope with climate change impacts, there does appear to be variability in the behavioural responses within species. However, if alterations in behaviour are insufficient to ensure that the individual remains within their optimal thermal range, physiological acclimation (i.e. defined as the process in which an organism adjusts to prevailing conditions by broadening their thermal performance curve so that their performance is maximized in the new thermal environment) may be required. Therefore, there is a critical link between the behaviour and thermal physiology of fishes, particularly in a world where they are facing increasing thermal stress. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
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- Date Issued: 2023-03-29
Cape Fold Ecoregion fish community ecology and responses to stressors
- Authors: Broom, Casey Jay
- Date: 2022-10-14
- Subjects: Cyprinidae South Africa Western Cape , Freshwater fishes South Africa Western Cape , Cyprinidae Habitat South Africa Western Cape , Food chains (Ecology) , Restoration ecology South Africa Western Cape , Riparian restoration South Africa Western Cape
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365644 , vital:65772 , DOI https://doi.org/10.21504/10962/365644
- Description: Freshwater fishes are in global decline and fish as a group are the most imperilled of all vertebrates. Freshwater systems are among the most threatened globally, largely owing to their comparatively high species and habitat diversity while occupying a minute fraction of the Earth’s surface. In South Africa, invasion by non-native fishes has had a devastating effect on freshwater systems across the country. Numerous other stressors and anthropogenic impacts continue to impact these systems, including habitat degradation, water abstraction and global change effects. In general, South African freshwater systems are under-studied and there is a lack of baseline biological and ecological studies on many freshwater fish species. The Cape Fold Ecoregion (CFE) of South Africa is a particularly vulnerable region, with many range-restricted species and highly fragmented native fish ranges following high invasion rates. Within the CFE, the Olifants-Doring River System (ODRS) is of primary concern owing to the high endemism and imperilled status of its freshwater fish species. The Rondegat River in the ODRS is of notable conservation value, as it hosts populations of important endemic CFE species. This river is unique, being the site of the first alien fish eradication programme of its kind in South Africa. Thus the Rondegat River, and in particular its imperilled cyprinid assemblage, is used here as a case study of the responses and community dynamics of recovering freshwater fish species. The members of this cyprinid assemblage are Sedercypris calidus, Pseudobarbus phlegethon and Labeobarbus seeberi. Sedercypris calidus and L. seeberi are listed by the International Union for the Conservation of Nature (IUCN) as “Near-Threatened”, while P. phlegethon is listed as “Endangered”. Understanding the dynamics and responses to understudied vulnerable fish communities in the wake of restoration efforts was the overarching goal of this thesis. The first chapter served as a review of current knowledge of the CFE, the Rondegat River, the myriad stressors that have impacted on or are projected to affect this region, and the freshwater fish species on which those stressors act. My first investigations served as an extension of the existing Rondegat River monitoring programme, making use of remote underwater video (RUV) data to assess relative abundance and habitat associations of the focal species (Chapter 2). A relatively limited spatial range of P. phlegethon was established, which was suggested to be a result of relatively highly specialised habitat requirements and sensitivity to disturbance. Sedercypris calidus was confirmed as a relatively more abundant and ubiquitous species across the length of the Rondegat River, sharing much of the lower and middle reaches with L. seeberi. I sought to use experimental trials of functional response, as a proxy for feeding performance, across representative temperatures and relevant prey types, in the spatially overlapping S. calidus and L. seeberi (Chapter 3). Labeobarbus seeberi generally outcompeted S. calidus across temperature treatments and prey types. The ecomorphology and diet of all three species were used to construct trophic profiles, which suggested that there was a high degree of feeding capacity overlap between L. seeberi and S. calidus, while P. phlegethon diverged from the other two species (Chapter 4). Gut content suggested that all three species overlapped broadly in diet. This indicated that the realised trophic niche of these species is similar, despite some morphological specialisation. I then used RUV data to investigate in-situ feeding behaviours, with the aim to disentangle the nuances of community dynamics and mechanisms of coexistence in the cyprinid assemblage (Chapter 5). I found that, despite the higher feeding performance of L. seeberi (Chapter 3) and its overlaps in diet and feeding capacity with S. calidus (Chapter 4), S. calidus is able to mitigate competitive pressures through foraging mode switching and exploitation of allochthonous food inputs. Evidence for further habitat and prey selectivity in Pseudobarbus phlegethon was gathered based on dependence on complex habitats and pool refugia for the majority of its feeding, supporting this species as a headwater specialist; alongside signals of its spatial and habitat use patterns (Chapter 2). While S. calidus and L. seeberi were found to be less habitat-specific than P. phlegethon, caution was noted in the potential for ongoing stressors, such as habitat destruction, loss of river connectivity and global change effects, to impact on the reproductive success of these two species. Stressors affecting the habitats and sensitive invertebrate taxa upon which all three species depend continue to threaten the Rondegat system, highlighting the need to maintain ecosystem integrity through conservation interventions. There remains significant scope to maintain restoration efforts in the Rondegat River and other river systems of the CFE, through direct conservation actions, enhanced community awareness, indigenous riparian vegetation restoration and involvement of local stakeholders in various conservation-centred activities. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Evaluating the trophic ecology and feeding habits of three divergent lineages of Sandelia bainsii (Teleostei: Anabantidae), from the Eastern Cape Rivers using stable isotope analysis
- Authors: Nkomo, Thulisile
- Date: 2022-10-14
- Subjects: Anabantidae , Trophic ecology , Food chains (Ecology) , Food web , Freshwater fishes Food , Stable isotopes
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/364984 , vital:65667
- Description: Despite supporting a disproportionately large fraction of the global biodiversity, freshwater ecosystems are ranked as the most highly threatened habitats on the planet, ahead of both terrestrial and marine ecosystems. Many regions are still characterised by limited knowledge regarding the taxonomy and ecology of freshwater fish taxa. The need for ecological information is increasingly becoming important due to the discovery of new species and unique lineages, which require conservation management. The aim of this study was thus to evaluate the trophic ecology and feeding habits of the three recently described and divergent Sandelia bainsii lineages, namely Sandelia sp. ‘bainsii Kowie’ from the Great Fish River, Sandelia sp. ‘bainsii Keiskamma’ found in the Keiskamma River, and Sandelia sp. ‘bainsii Buffalo’ confined to the Buffalo River system in the Amathole-Winterberg freshwater ecoregion in the Eastern Cape Province, South Africa. Based on the allopatric distribution and the generalist feeding habits of these lineages, this thesis postulated that these three lineages were likely to show similar trophic ecology patterns, different dietary composition and as a result would have variable trophic positioning in the different river systems. Therefore, the primary objectives were to use stable isotope analysis to (1) evaluate the food web patterns of the river systems where the three S. bainsii lineages occurred, and (2) determine dietary source contributions for the three lineages using isotope mixing models. The results revealed general variability and significant differences in the δ13C and δ¹⁵N values for the different basal resources, macroinvertebrates and fish community across the different headwater streams. Within and across the different rivers, the S. bainsii lineages exhibited variable isotopic niche sizes, which appeared to coincide with the variation in the isotopic composition of the individual communities. Furthermore, these lineages did not exhibit any discernible patterns in their interspecific interactions in different habitats. This suggests that these lineages’ isotopic niche patterns were largely influenced by spatial differences in both trophic resources and probable interactions with contraspecifics. Assessment of trophic positions of S. bainsii lineages showed that the three lineages had higher trophic positions than other co-occurring species at most sites, except in the Buffalo River. This suggest that the different lineages were generally top predators in the different river systems. Although S. ‘bainsii Buffalo’ had a lower trophic position compared to other co-occurring species, its trophic position was generally characterised by high uncertainty, indicating that this lineage was likely influenced by the occurrence of diet sources that had highly variable stable isotope values. Findings from stable isotope mixing models revealed that the diet sources varied from the dominance of either single diet source in the Fairburn and Tyume 1 River to the importance of multiple prey sources from the Lushington and Kat River system. This suggests that despite being a top predator at most sites, the diet sources for the different lineages were highly variable. The patterns observed in this study did not appear to be attributed to species divergence possibly caused by allopatric speciation, but rather differences in food web characteristics of the river systems, as well as the lineages interspecific relationships and their generalized feeding strategies. Understanding the trophic dynamics of these lineages will assist in implementing effective conservation strategies and policies dealing with narrowly distributed species that are threatened by habitat fragmentation and invasion of piscivorous fish. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Long-term trends in fish length-at-age, catch-at-length and condition of the Namibian and South African commercially exploited species
- Authors: Iyambo, Elago Martha
- Date: 2022-10-14
- Subjects: Fishery management South Africa , Fishery management Namibia , Fishes Growth , Fisheries Fishing effort , Climatic changes , Fishes Climatic factors
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/362872 , vital:65370
- Description: Fish growth rate is a flexible trait that can evolve in response to fishing or environmental change. Therefore, knowledge of fish growth rate patterns, long-term and short-term responses to fishing effort and environmental change is important for fisheries management in the Benguela. Historical and current age length keys have been used as indicators of annual fish growth in the Benguela, the growth rate study on Merluccius paradoxus demonstrated long-term changes in growth over three decades as a response to fishing. However, the fish growth rate patterns, in relation to fishing effort and environmental change patterns are still not known for the many commercially important stocks in the Benguela. The specific objectives of the project were to determine the annual variability and long-term trends, in annual mean lengths-at-age, catch-at-length and fish condition of 17 commercially exploited resources, targeted and bycatch in Namibia and South Africa in relation to environmental changes (sea surface temperature). The results showed that there was a significant decrease in mean length at age 7 for Merluccius capensis (Namibian stock), a significant decrease in mean length at ages 3 to 7 for South African M. capensis and a significant increase in mean length at ages 2 to 6 for South African M. paradoxus Fishery-induced evolution may be the reason for the increase in mean length in the early stages of hake. A regime shift was detected in the mean length at age 1 for Etrumeus whiteheadi (South African stock) caused by changes in water temperatures. A decrease in mean length of the catch was observed for Namibian M. capensis and the reason for this could have been the stock being overexploited during the years of the observed trend (1968 to 1987). Historically both the Namibian Lophius vomerinus and Helicolenus dactylopterus were bycatch of the hake fishery, therefore, the decrease in their mean length of the catch may be due to increased bycatch mortalities due to increased hake catches. The improvement in the management measures of the Jasus lalandii fishery and possible favourable oxygen fluctuation might have caused the stock to increase in mean length of the catch between 1977 and 1982. Fish condition showed a significant difference in stocks between years. Fish condition of M. capensis, M. paradoxus and T. capensis were analysed. The rest of the commercial stocks were omitted because there was limited length-weight data. For Namibian M. capensis the spawning season may have caused fish to have the best condition in 1987 and while higher temperatures in 1983 may have led to the worst condition in 1983. Higher prey availability in 1979 for Namibian M. paradoxus could have been the reason for fish with best condition being found in 1979. T. capensis had the highest condition index in 1986 when cooler summer SST prevailed that may have been more favourable for T. capensis to live in. July, September and January SSTs were significantly negatively correlated with the mean length of M. capensis at age 3. This was perhaps due to upwelling intensity and plankton productivity which increases in winter and decreases in summer. A separate study of the impacts of fishery-induced changes and density-dependence on fish growth rate, as well as the effects of other environmental variables is recommended. Since data for some species was outdated, it is suggested to update biological variables and assessment for future work. This study can be used to understand the key life history characteristics of Namibian and South African exploited resources, targeted and bycatch. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Movement patterns of the iconic giant kingfish Caranx ignobilis from Southern Africa
- Authors: Dixon, Russell Bruce
- Date: 2022-10-14
- Subjects: Caranx Africa, Southern , Caranx Migration , Underwater acoustic telemetry , Carangidae Africa, Southern , Fish tagging
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/362797 , vital:65363
- Description: Giant kingfish Caranx ignobilis, the largest species in the family Carangidae, are global icons as apex marine predators. They are widespread in tropical to subtropical regions globally, where they are of high importance to ecosystems and fisheries. During summer, adults aggregate for spawning, making them vulnerable to overfishing. The world’s largest recorded C. ignobilis aggregation is in southern Mozambique. Some of these aggregating individuals (an unknown proportion) have been recorded passing into South African waters. Furthermore, a unique aggregation of adult C. ignobilis in South Africa’s Mtentu Estuary has attracted global attention but remains unexplained, hence warranting investigation. Research on C. ignobilis globally has shown relatively small home ranges. Research in southern Africa has been limited and inconclusive. Thus, the broad aim of this study is to describe the movement patterns of C. ignobilis from southern Africa. Long-term (36 years) mark-recapture data from the Oceanographic Research Institute’s Co-operative Fish Tagging Project, comprising 3 729 tagged C. ignobilis and 144 recaptures, were analysed. While 74% of recaptures were recorded < 1 km from the tagging location, long-distance movements of up to 419 km were also recorded (mean = 15 km). Although adults moved significantly (p < 0.01) greater distances than juveniles, they also displayed high levels of site fidelity. Seasonal trends included evidence of a summer migration; however, there was still considerable uncertainty regarding exact movements. Therefore, 43 C. ignobilis were acoustically tagged and subsequently monitored along the east coast for over five years with the Acoustic Tracking Array Platform’s passive receiver array. All acoustically tagged adult C. ignobilis migrated to southern Mozambique each year (with minor exceptions), from distances of up to 632 km. When not migrating, South African-based fish showed consistent inter-annual fidelity to individual home ranges. Although coastal home range length (excluding migrations) varied considerably between individuals, even the mean length (92 km) was greater than any previously recorded C. ignobilis home range, globally. In contrast to the southern Mozambique aggregation, the Mtentu Estuary aggregation seems to comprise of individuals showing fidelity to that region. The passive tracking of eight acoustically tagged individuals in the Mtentu Estuary revealed clear trends. Statistical modelling showed that estuarine presence was strongly associated with periods of cold coastal upwelling. Diel movement patterns showed that the utilisation of warm surface waters ~ 4 km upstream during the day was followed by nightly departures to the mouth or sea. Thus, it is likely that this majestic aggregation is for thermal refuge; specifically, for daily re-warming after feeding in cold waters at night. Findings from this study are of global ecological interest and have direct applications for local fisheries management and the development of sustainable eco-tourism. Protecting these vulnerable aggregations is of the utmost importance for the future of this species in southern Africa. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Stock structure of Patagonian toothfish Dissostichus eleginoides (Smitt 1898, family Nototheniidae) in the Southwest Atlantic
- Authors: Lee, Brendon
- Date: 2022-10-14
- Subjects: Otoliths , Patagonian toothfish Geographical distribution , Fish tagging , Biogeography , Microstructure , Microchemistry
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365599 , vital:65763 , DOI https://doi.org/10.21504/10962/365599
- Description: The identification of discrete self-sustaining productive units in marine populations is essential for achieving sustainable fisheries objectives. Marine fish populations frequently exhibit dynamic characteristics across their life-histories, displaying variability in spatial structure and mixing patterns, both within and among populations. The incoherent application of management boundaries on biological populations can bias stock assessment results and have important implications on sustainable fisheries management. Patagonian toothfish (Dissostichus eleginoides) is a long-lived, slow-growing, late-maturing, deep-sea, benthopelagic species. It forms the basis of important and highly lucrative industrial and artisanal fisheries across its distribution. Patagonian toothfish have complex life-histories characterised by high dispersal potential during the egg and larval phase, a wide depth range because of their ontogenetic migratory behaviour, and large adult size that is capable of undertaking long-distance active movements (>200 km). These characteristics provide opportunities for high levels of connectivity, and as such, the stock structure is not well understood. We applied an integrated, multidisciplinary approach to provide an improved understanding of the complex stock structure dynamics for Patagonian toothfish on the Patagonian Shelf, specifically in relation to the shelf, slope, and deep-sea plains around the Falkland Islands. Research results were focused on aspects pertaining to (1) geographic variation in phenotypic characters (otolith shape); (2) a description of the spatial-temporal distribution patterns; (3) the active movements of deep-sea adults (tag-recapture study); and (4) the identification of early life-history dispersal through otolith microstructure and microchemical chronologies. Results from the study indicate high regional connectivity during the early life-history stages derived from at least two spawning contingents into spatially discrete nursery areas (cohort groups) on the Falklands Shelf. Fish followed distinct ontogenetic pathways into deeper waters adjacent to the areas wherein juvenile settlement into a demersal habitat occurred. There is little to no evidence of mixing among cohort groups during their ontogenetic migration into deep-sea adult habitats, reflecting a mixed population based on oceanographically defined egg and larval dispersal. The majority of the adult component of the population continue to display high site fidelity. However, between 9 and 25% of the population, consisting predominantly of larger reproductively capable adults undertake long-distance dispersal behaviour, identified as home-range relocations from the adult deep-sea habitats towards three of the known southern spawning grounds in the region. Results are suggestive of a requirement for improved collaborative efforts for regionally-based management approaches with careful consideration of local stock contingents. Future monitoring and research priorities should focus on the identification of reproductive potential, dispersal pathways and settlement patterns of stock contingents to inform the dynamics of mixed stock origins across the Patagonian region. While many aspects regarding the stock structure remain unresolved, results derived from the current studies can be used to inform the development of management measures to ensure the continued recovery and sustainable management of Patagonian toothfish within the region. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Towards an improved understanding of episodic benthic turbidity events (Benthic Nepheloid Layer) on the Eastern Agulhas Bank, South Africa
- Authors: Johnstone, Brett Mordaunt
- Date: 2022-10-14
- Subjects: Nepheloid layer , Turbidity , Loligo reynaudii , Fisheries South Africa , Oceanography , Remote sensing , Altimetry , Climatic changes
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/362883 , vital:65371
- Description: The harvest of Loligo reynaudii, or "chokka," represents a critical source of revenue and job creation in the historically impoverished Eastern Cape Province of South Africa. Due to the importance of visual stimuli in the reproductive processes, it has been hypothesized that a primary driver of successful reproduction is the clarity of the water column. The presence of increased particulate matter concentrations within the water column generates turbid conditions near the seafloor (visibility < 1m), that are proposed to restrict spawning activity. This benthic nepheloid layer (BNL) contains both organic and inorganic components, with the BNL intensity a function of bottom turbulence, substratum type, and detritus level. However, the spatial and temporal resolution of BNL intensity on the Eastern Agulhas Bank (EAB) and the environmental drivers thereof remain unknown. Here we show that benthic turbidity events are a common but highly variable occurrence on the EAB. Results from a 17-month time-series of in-situ and remote sensing data between 2002 – 2004 in Algoa Bay, supplemented by experiments in other bays important for spawning, show that turbid conditions existed for ∼ 30 % of the sample period. Exploration of environmental drivers, including the influence of wind, altimeter-derived significant wave height (Hs), sea surface temperature (SST), and chlorophyll-a (Chl-a) concentrations indicate that BNL intensity does not conform to a "one-size-fits-all" approach. Rather, complex local hydrological and physiochemical parameters control the BNL characteristics on the EAB. Global warming is likely to increase the frequency and intensity of extreme westerly-wind and storm events, promoting BNL events on the Eastern Agulhas Bank and possibly causing a shift in the reproductive strategy of chokka squid to the cooler mid shelf region. This is likely to have consequences for both the species in terms of reproductive success and the fishery, which is concentrated on inshore spawning aggregations. Future research needs to quantify and characterize the constituents, source particles and spatial-temporal variability of BNL events in order to build a predictive capacity. Through incorporating the qualitative analysis of the dynamics of nepheloid layers on the EAB into Regional Oceanographic Models (ROMS), General Linear Models (GLM) and particle distribution models such as DELFT-3D, it is possible to move toward predicting the timing and intensity of these events. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Understanding resource partitioning in three species of Gobiidae living in the warm-temperate Sundays Estuary
- Authors: Ndaleni, Phumza Malibongwe
- Date: 2022-10-14
- Subjects: Gobiidae South Africa Sundays Estuary (Eastern Cape) , Gobiidae Reproduction , Gobiidae Food , Gobiidae Geographical distribution , Gobiidae Morphology , Resource partitioning (Ecology)
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365655 , vital:65773 , DOI https://doi.org/10.21504/10962/365655
- Description: Estuaries represent a transition zone where saline water combines with freshwater, and this results in temporal and spatial variability in both biotic and abiotic parameters. Because the environmental gradient changes so rapidly in areas and the estuarine environment is harsh, fish need to either be able to specialise to one particular suite of abiotic contexts or have the physiological mechanisms to allow them to move throughout the gradient of the estuary. Apart from this, other factors such as climate change, habitat degradation, over exploitation of resources and the introduction of alien species also negatively influence fish species living in estuaries. These anthropogenic stressors can cause species exclusion in areas which were previously suitable for species with particular suites of traits. Measuring resource partitioning within functional groups not only helps in determining the functional structure of communities but also explains how organisms use resources in a community. Resource partitioning studies provide a useful conceptual framework to understand species interactions in a community and identify major resource dimensions along which species segregate. This study aimed to describe resource partitioning among the Gobiidae species, as the family is well represented in South African estuaries (24 species), is highly abundant and has several species which co-exist in individual estuaries. To accomplish this, different forms of resource partitioning that promote the coexistence of the three most abundant species found in warm-temperate South African estuaries; the Knysna sand goby Psammogobius knysnaensis (Smith, 1935), Prison goby Caffrogobius gilchristi (Boulenger, 1898) and River goby Glossogobius callidus (Smith, 1937) were investigated in the Sundays Estuary. This was accomplished by determining the reproductive biology, interspecific differences in feeding morphology, feeding ecology and habitat partitioning among the three species. The distribution and abundance of potential prey in the estuary (mesozooplankton and macrozoobenthic communities) were investigated, with both mesozooplankton and macrozoobenthic communities grouping into three distinct communities along the environmental gradient. Feeding morphological traits responsible for prey location, chasing, capture, mastication, ingestion and digestion were investigated. Little morphological overlap was observed between P. knysnaensis and C. gilchristi, indicating little dietary overlap between these two species. In contrast, the feeding morphology of Glossogobius callidus overlapped with both P. knysnaensis and C. gilchristi, indicating the potential to compete with both species for food. The trophic ecology of the three species was investigated using stomach content analysis, whereby prey abundance, frequency of occurrence and percentage of volume were determined. For P. knysnaensis, the incorporation of cyclopoids and ostracods decreased with fish size and that of bivalves and amphipods increased. Caffrogobius gilchristi was found to be a specialist feeder on cyclopoids but as the species increased in size the incorporation of amphipods, mysids, brachyurans and gastropods increased. Glossogobius callidus was found to be a generalist feeder, feeding on cyclopoids, amphipods and chironomids. The incorporation of cyclopoids decreased with fish size and the consumption of large sized amphipods and chironomids increased with fish size. To assess their reproductive biology, gonadosomatic index (GSI) was used to study the breeding season. In all three species, reproduction peaked in spring and summer, and this is associated with peak phytoplankton and zooplankton biomass in estuaries. Length at 50% maturity and fecundity were also determined. The three species predominated in different locations in the estuary, which explains why they were able to use similar resources and reproduce at the same time. Psammogobius knysnaensis was abundant in the sandy mouth region, with sediment type and prey (bivalves and mysids) availability affecting its distribution. Caffrogobius gilchristi was abundant in the muddy lower reaches of the estuary, with its distribution influenced by sediment composition and temperature. Glossogobius callidus was abundant in the turbid upper reaches, with its distribution influenced by prey (amphipods) availability and turbidity. Different habitat preferences and diet among the specific size ranges enabled coexistence among the species. This explains the high abundances and coexistence of gobies in South African estuaries. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
An eco-physiological investigation of fisheries-induced evolution: comparing the resilience of larvae from exploited and unexploited commercial reef fish populations to projected ocean acidification
- Authors: Muller, Cuen
- Date: 2022-04-08
- Subjects: Ocean acidification , Fishes Climatic factors , Fishes Physiology , Fishes Metabolism , Fishes Respiration , Fishes Larvae , Fishery management , Chrysoblephus laticeps (Red roman)
- Language: English
- Type: Doctoral thesis , text
- Identifier: http://hdl.handle.net/10962/232579 , vital:50004 , DOI 10.21504/10962/232579
- Description: It is now accepted that anthropogenic-induced climate change is resulting in unprecedented rates of change to marine environments. Marine organisms are being challenged by rapidly increasing temperatures, acidification, expansion of oxygen dead zones, and higher frequencies and magnitudes of extreme weather events. Exploited fish populations are also undergoing selective harvesting. Certain traits, such as large size, fast growth, and/or bold/active behaviours, are being actively targeted and removed from the population gene pool. This selective removal of individuals may compromise the capacity of fish populations to resist or recover from environmental disturbances and reduce their ability to adapt to a changing environment as many of these traits are heritable. As most marine fishes' embryonic and larval stages represent the period when individuals are most sensitive to environmental disturbances, they are a critical bottleneck to population persistence in the face of exploitation and climate change. This thesis aimed to quantify and compare the metabolic physiology, growth, and development of an exploited and endemic sparid, the roman seabream Chrysoblephus laticeps, during the early larval stages under 1) ocean acidification conditions expected by the year 2100 and 2) from populations experiencing dissimilar rates of exploitation. To quantify and compare the physiology of larvae, adult C. laticeps from an exploited population were captured and field-spawned. Fertilised eggs were placed into either control/present-day conditions (pH = 8.03, pCO2 ≈ 420 μatm) or high-pCO2/hypercapnic treatment conditions (pH = 7.63, pCO2 ≈ 1400 μatm). The metabolic physiology of individual larvae was determined using a novel rolling-regression technique on static respirometry data. Here, estimates of the minimum and maximum oxygen consumption rates (VO2) could be determined with high test-retest reliability. The very early developmental stages (yolk-sac stage) appeared resilient to high pCO2 conditions despite being exposed to treatment conditions throughout the embryonic stage. Preflexion larvae showed sensitivity to treatment conditions by exhibiting reduced metabolic and growth rates, consistent with metabolic depression, associated with environmental stress. However, by the onset of flexion, which coincides with gill development, acid-base regulation, and muscle differentiation, metabolic and growth rates of treatment larvae were significantly greater than that of controls. This suggests that acid-base regulation imposes a high cost to maintain internal pH homeostasis. Importantly, these elevated metabolic costs were likely mediated through increased feeding rates in experimental conditions where food was ad libitum. In natural conditions, where food availability may be varied, high pCO2 conditions could be associated with higher mortality rates. Based on evidence that protected/unexploited populations are more genetically diverse and are composed of individuals representing a greater range of metabolic phenotypes, offspring were collected from a protected population experiencing otherwise similar environmental conditions to the exploited population. Metabolic rates of control larvae were generally similar to those of the exploited population. However, minimum rates of VO2 were typically higher for larvae from the protected population at comparable life stages. Preflexion treatment larvae from the protected population did not appear to undergo a period of reduced metabolism or growth compared to their control counterparts. While metabolic rates at the onset of flexion were significantly higher for treatment larvae, this was not associated with growth differences. Growth over-compensation following periods of growth depression is often associated with deleterious effects, such as organ damage and body or developmental malformations. This suggests somewhat improved resilience to ocean acidification conditions. This thesis found evidence that larval C. laticeps are sensitive to ocean acidification conditions expected by 2100. When this stressor is combined with increasing thermal variability, changing current coastal regimes, and heterogeneous food availability, also expected to occur by 2100, ocean acidification may compromise the population persistence of this species. However, an energetics approach to stress-tolerance suggests that larvae from the protected population may inherently show greater resilience to climate change-related environmental stressors. Evidence that exploitation affects the resilience of fish larvae to climate change highlights the need for an evolutionary approach to fisheries management and the importance of spatial protection in maintaining larger and more resilient populations while providing the raw material essential for adaptation. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-04-08
Effect of adding a probiotic to an aquaponic system on plant and fish growth, water quality, and microbial diversity
- Authors: Kasozi, Nasser
- Date: 2022-04-08
- Subjects: To be added
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/294596 , vital:57236
- Description: Thesis embargoed. Release date April 2023. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-08
The role of angling-guides in promoting pro-environmental catch-and-release attitudes and behaviours in the recreational angling community
- Authors: Farthing, Matthew William
- Date: 2022-04-08
- Subjects: Fishing , Fishing Catch effort , Fishing guides , Fishers , Human behavior , Role models
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/294583 , vital:57235 , DOI 10.21504/10962/294585
- Description: Angling-guides are respected as opinion leaders of the recreational angling community, but nothing is known of their influence on angler behaviour. Given their social-standing, angling-guides may be perceived as role-models by angling-clients – thereby promoting the adoption of best and/or poor catch-and-release (C&R) practices, depending on their individual knowledge, attitudes and behaviour. It is critical to understand their potential influence, their knowledge and their behaviours to inform effective intervention strategies which could exploit their extensive networking potential. The aim of this thesis was to better understand the potential utility of angling-guides in efforts to improve angler behaviour. Firstly, this was done by investigating whether angling-guides are perceived as role-models by angling-clients (Chapter 2). Secondly, it was done by assessing the current level of knowledge, attitudes and behaviours of angling-guides from around the world (Chapter 3). Thirdly, it was done by exploring the relationship between angling-guide knowledge, attitudes, intentions and actual behaviour in a case-study of guided-angling trips (Chapter 4). Lastly, it was done by exploring intervention frameworks and incorporating insights into potential strategies for promoting pro-environmental angling behaviours to angling-guides (Chapter 5). To understand if angling-guides are perceived as role-models by the recreational angling community (Chapter 2), a digital survey was designed to assess previous angling-clients’ attitudes towards angling-guides serving the three role-model functions proposed in the Motivational Theory of Role-Modelling, namely as Behavioural models, Representations of the Possible and Inspiration. Of the 492 angling-clients (27 countries), most agreed that angling-guides were competent, skilled, and worth emulating (91.1%), suggesting they are perceived as Behavioural Models. Less agreed that angling-guides were Inspirational or Representations of the Possible (54.8%), suggesting they are less likely to motivate anglers to adopt and/or pursue new goals. As Behavioural Models, angling-guide C&R practices are likely to be emulated, which is of both utility and concern to managers. As angling-guides are likely to be emulated, a digital survey was designed to assess their knowledge, attitudes and behaviours (particularly C&R best-practices) (Chapter 3). Of the 342 angling-guides (47 countries), few had accredited training (9.4%). However, most were deemed “knowledgeable of best-practices” (69.0%), but pervasive misconceptions of key C&R best-practices were observed. Attitudes towards best-practices were generally pro-environmental, and those deemed knowledgeable had significantly more pro-environmental attitudes (p = 0.003). Most angling-guides had pro-environmental attitudes towards their environmental responsibilities (87.1 - 89.5%), but these broad attitudes cannot predict specific pro-environmental behaviours during guided-angling trips where angler satisfaction is often at odds with best-practice. Angling-client satisfaction has important financial implications for angling-guides, and even those with pro-environmental intentions may struggle to adhere to C&R best-practices with inherent sacrifices for the angling-client’s enjoyment. Observation of behaviour in context is critical for understanding the behaviour to be changed. To explore the relationship between angling-guide knowledge, intentions and actual behaviour (Chapter 4), five angling-guides were observed (and filmed) interacting with groups of angling-clients during their guided-angling trips over a 30 day period. Five angling behaviours of interest were identified, and a survey focussed on these behaviours was disseminated (18 months later) to the five angling-guides previously observed to assess their knowledge, attitudes, reported behaviours and perceptions of the norm. Generally the subjects’ reported behaviours aligned well with their knowledge of best-practice, but their actual behaviour was not well aligned (24.4%). Instead, their actual behaviour aligned better with their perceptions of the norm (80.9%), which was generally a “worse” practice than what they reported. Angling-guides appeared to favour client-satisfaction over pro-environmental behaviour. Gaps between angling-guides’ knowledge of best-practice and their actual behaviour indicate that there may be obscure and complex barriers to pro-environmental angling-guide behaviour. Many barriers are seemingly impossible to overcome, such as economic limitations and financial disincentives. These barriers may limit the efficacy of traditional knowledge-attitude-behaviour (KAB) change interventions. The strong alignment of angling-guide behaviour with social norms, and the strong community orientation of recreational angling suggests that the Community-Based Social Marketing (CBSM) approach may be a more effective framework for interventions that aim to promote pro-environmental catch-and-release behaviours at angling-guide level. The CBSM approach allows interventionists to leverage a larger suite of cognitive biases than KAB approaches, provided that sufficient understanding of the context, barriers and benefits for a given segment of the angling-guide community (likely defined by style-of-participation) are obtained. Furthermore, the success of the CBSM approach will depend on the ability of interventionists to effectively recruit and incentivise disjunct and isolated communities of angling-guides to participate in training and workshops in order to achieve the important in-person contact on which the CBSM approach depends. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-08
The biology and movement patterns of non-native common carp, cyprinus carpio (l) in Groenvlei, South Africa
- Authors: Mukhari, Dinah Lorraine
- Date: 2022-04-06
- Subjects: Carp South Africa Goukamma Nature Reserve , Introduced fishes South Africa Goukamma Nature Reserve , Carp Behavior South Africa Goukamma Nature Reserve , Carp South Africa Goukamma Nature Reserve Growth , Carp Habitat South Africa Goukamma Nature Reserve , Carp South Africa Goukamma Nature Reserve Reproduction , Habitat conservation South Africa Goukamma Nature Reserve , Aquatic resources conservation South Africa Goukamma Nature Reserve
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291233 , vital:56834
- Description: The common carp, Cyprinus carpio is a highly invasive fish species, first introduced into South Africa in the late nineteen century, and now widely spread throughout the country. In 1991 carp were illegally introduced to Groenvlei, within the Goukamma Nature Reserve in the Western Cape Province. Decreases in water quality and declines in biota have been attributed to the now large numbers of carp. Management measures have commenced to reduce the carp population, however these are not underpinned by science as little is known about the biology and movement patterns of resident carp. The age, growth and maturity of carp within the lake was determined using oxytetracycline hydrochloride marked asteriscus otoliths and macroscopic gonad development staging methods. The results showed that carp in Groenvlei had similar growth characteristics to the invasive populations in North America and Australia; fast growth during the first three to five years and reproductive maturity attained between the ages of two to three years, and are long lived (maximum age of 20 years old). Their growth however differed from the only other study on a South African population. Six acoustically tagged carp were manually tracked in order to report on their movement patterns and habitat use. Carp moved much greater distances in February compared to October and November, and occupied different areas of the lake. In November they were found to aggregate in backwaters which corresponds with their breeding activities. Literature on global carp control shows that whilst eradication of this fish can be achieved in small isolated waters using icthyocides and water drawdowns, in conservation priority areas such as Groenvlei where this is not possible, mechanical removal using multiple gears targeting vulnerable life stages can most efficient at controlling carp. This study identified where and when these methods could be focused to optimise control efforts. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
The diversity and dry season habitat associations of fish communities in the Kabompo River Basin, Upper Zambezi, Zambia
- Authors: Rennie, Craig Lawrence
- Date: 2022-04-06
- Subjects: Biodiversity Zambia Kabompo District , Ecology Zambia Kabompo District , Fish communities Zambia Kabompo District , Fishes Ecology Zambia Kabompo District , Freshwater habitats Zambia Kabompo District , Fishes Effect of human beings on Zambia Kabompo District , Fishes Climatic factors Zambia Kabompo District , Mesohabitat
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232261 , vital:49976
- Description: The Zambezian headwaters contain diverse fish communities which support thriving fisheries. This region and its fishes are under pressure from multiple anthropogenic threats, including overexploitation and large-scale developments with potential knock-on effects for the riparian communities. Previous studies have focused on known fisheries areas and the mainstem Zambezi River, neglecting large tributaries such as the Kabompo River. Consequently, little literature is available on the diversity and ecology of the fishes that inhabit these large tributaries, hindering the effective management and protection of biodiversity. This study aimed to fill the current knowledge gaps in the diversity and habitat associations of fish communities in the Upper Zambezi, using the Kabompo River as a case study. The first objective was to provide an updated checklist of the fishes of the Kabompo River basin using a compilation of historical data and field surveys. This study detailed the occurrence and distribution of 83 fish species within the Kabompo River basin. All these species have been recorded in the Upper Zambezi, with some of their ranges extending into the Middle (29 species) and Lower Zambezi (23 species) while others have more restricted distributions. The most diverse families were the Cyprinidae (26 species) and the Cichlidae (15 species). A number of potential undescribed species, whose taxonomic distinctiveness need further investigation were also collected. Taxonomic conflicts are also highlighted for some of the taxa that were previously considered to have broad geographic ranges or disjunct distributions. Consistent with findings from other studies within the region, the current taxonomy underestimates the diversity of fishes in the Kabompo River and Upper Zambezi. The second objective was to assess the habitat use of small-bodied fish communities during the low-flow period in 2019. Reconnaissance trips identified dominant mesohabitats along the middle Kabompo River around Jivundu. A total of 139 mesohabitats were sampled across the five dominant mesohabitats identified; Phragmites mauritianus, wood, rock, Vallisneria aethiopica and bare substrate. Catch per unit effort, species richness, Shannon diversity and Pielou’s evenness differed significantly between these mesohabitats. Twenty-six species showed significant associations (p < 0.05) with a specific mesohabitat type or environmental variable (current velocity or depth). Eight species were associated with the woody habitat, with three of these, E. radiatus, E. unitaeniatus, and P. ngamensis being almost exclusively associated with this habitat. Enteromius kerstenii, E. lineomaculatus and S. depressirostris were almost exclusively associated with P. mauritianus and represent potential indicator species for this habitat. A number of species were also with both P. mauritianus and woody habitats. Nine species showed statistically significant associations with the rocky mesohabitat, with Amphilius uranoscopus and Petrocephalus longicapitis, being almost exclusive to rocky sections of the river. Therefore, species such as A. uranoscopus are potential indicators for monitoring the integrity of rocky habitats under threat from sedimentation. The strong associations indicate that this comprehensive baseline may be valuable indicators/ proxies for identifying anthropogenic induced change in the Kabompo basin. This would provide a basis to determine fish responses to regional environmental changes associated with human activities. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
The effects of temperature and exploitation on the behaviour of red roman Chrysoblephus laticeps (Sparidae) at baited video stations
- Authors: Mataboge, Bontle Boitumelo
- Date: 2022-04-06
- Subjects: Marine resources conservation South Africa Agulhas , Sparidae Effect of temperature on South Africa Agulhas , Sparidae Climatic factors South Africa Agulhas , Sparidae Effect of fishing on South Africa Agulhas , Sparidae Effect of human beings on South Africa Agulhas , Sparidae Behavior South Africa Agulhas , Overfishing South Africa Agulhas , Underwater videography in wildlife monitoring South Africa Agulhas , Red roman (Chrysoblephus laticeps)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291140 , vital:56823
- Description: Marine environments are experiencing rapidly increasing temperatures, sea levels and acidification and higher frequencies and magnitudes of extreme weather events as a result of climate change. In the Agulhas Ecoregion of South Africa, there has been an increase in the frequency and intensity of upwelling events. Upwelling events result in rapid and large decreases in water temperature which can persist for several days. Variation in water temperature is known to impact the metabolic rate of fish (which are ectotherms) and in turn their activity patterns. To promote fitness related traits, the metabolic rate of fish is maximised at a specific temperature range. Outside of this optimal temperature range, the capacity of fish to perform aerobically declines. Therefore, it is expected that an increase in upwelling may place the fish under significant physiological stress. The effects of climate change can be compounded by the effects of fisheries-induced evolution; the microevolution of a fish population due to the artificial selection of certain biological traits by fishing practices. Passive fishing gears preferentially remove large (older) and bold individuals, causing reductions in population size, genetic diversity and fecundity as well as size and age truncation and the loss of large, bold and dominant phenotypes in fish populations. These demographic changes affect the adaptive capacity of fish and exploited populations are expected to be less resilient to climate variability and long-term temperature change. The resilience of fish is largely dependent on their physiological attributes, particularly their metabolic rate. Theoretically, fish with broader aerobic scope (defined as the difference between an individual’s maximum metabolic rate and standard metabolic rate) will be more tolerant to the impacts of climate change as they have energy available for adaptation. Recent respirometry and accelerometry studies suggest that populations of the endemic southern African linefish Chrysoblephus laticeps (red roman) from inside marine protected areas (MPAs) have higher metabolic rates and broader aerobic scope compared to those found outside of MPAs, particularly at thermal extremes. As C. laticeps are highly resident it is possible that fish populations protected within well-established MPAs may be more resilient to the physiological stresses caused by upwelling if they are able to maintain their activity levels despite changing temperatures. Behaviour is a proxy that can be used to infer metabolism as behaviours have associated metabolic costs and benefits. Behaviour is also a trait that can be altered by passive fishing practices which preferentially extract more active and bold individuals. Given this context, the aim of this thesis was to determine the effects of short-term thermal variability on the population structure and behaviour of C. laticeps and whether these effects differed between protected and exploited populations. Baited remote underwater stereo-video systems (stereo-BRUVs) were used to observe C. laticeps inside two MPAs (Tsitsikamma and Goukamma) and at two exploited sites (Port Elizabeth and Cape St. Francis) over the temperature range 10-18 °C. The relative abundance, size and relevant behaviours of C. laticeps were recorded. The relative abundance (MaxN) of C. laticeps was not significantly higher inside the MPAs compared to the exploited sites. The size of C. laticeps did not vary significantly by protection level either. However, the mean size of C. laticeps was considerably smaller at Port Elizabeth compared to the three other locations. There was a notable absence of large C. laticeps size classes at Port Elizabeth. The effect of water temperature on relative abundance was only seen in the exploited areas, where temperature and abundance were positively correlated. This was not the case in the protected areas where C. laticeps abundance remained roughly consistent. Generally, the effect of temperature on all measured behaviours was consistent across protection levels. An exception was that the feeding rate at Tsitsikamma MPA was significantly higher than at Cape St. Francis at temperatures below 11.5 °C. Temperature had a significant effect on the time taken for the first individual to appear in the field of view. This time shortened with increasing temperature, regardless of protection level. This was likely a result of the metabolic constraints placed on individuals by low waters temperatures and individuals would be able to pursue the bait more readily at higher temperatures. However, there was no evidence of greater metabolic scope from the C. laticeps individuals observed in the MPAs, relative to the exploited areas. Individual size and the presence of conspecifics were also found to significantly influence behaviour. Generally, size had a positive relationship with behaviour, with larger individuals more likely to feed on the bait, chase other fish from the bait (only in the MPAs) and spend more time in the field of view. The higher displays of aggression in MPAs may be an indication of fishing practices having removed bold and dominant individuals at the exploited sites. The probability of fleeing and the feeding rates of individuals increased with increasing numbers of conspecifics, suggesting that C. laticeps behaviour is influenced by intraspecific competition. Overall, this thesis did not find strong evidence that C. laticeps from MPAs performed better than C. laticeps from exploited areas, even at low temperatures. Behavioural responses to temperature were highly variable across locations and this may be attributed to high behavioural phenotypic diversity among individuals. Environmental stressors, such as temperature changes, can illicit very different behavioural responses among individuals in a population. It is also possible that C. laticeps from the exploited areas have the same genetic predispositions to physiological stress as the individuals in the MPAs due to spillover and larval recruitment from the MPAs. Indeed, genetic studies find that all C. laticeps population in South African represent a single well-mixed genetic stock. It is likely that greater sampling effort is required to resolve the patterns in behaviour between exploited and protected populations. Nonetheless, given the influence of size on behaviour, the smaller size of C. laticeps at Port Elizabeth may be cause for concern regarding the vulnerability of future populations to ongoing climate change. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
A biological assessment of the Cape knifejaw (Oplegnathus conwayi) an endemic South African teleost
- Authors: Foster, Ryan Matthew
- Date: 2021-10-29
- Subjects: Perciformes South Africa , Osteichthyes South Africa , Fisheries South Africa , Perciformes Growth , Perciformes Age , Perciformes Reproduction , Sampling Citizen participation , Cape knifejaw (Oplegnathus conwayi)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191057 , vital:45054
- Description: The South African spearfishery forms a small component of South Africa’s complex coastal fishery. Although the smallest, this fishery sector has the largest proportion of data deficient species, and as a consequence is poorly managed. Oplegnathus conwayi (Cape knifejaw) is an example of one of these species for which there is very little and outdated biological and ecological data. This species is among the top target species by recreational spearfishers in South Africa. This thesis aimed to improve our socio-ecological knowledge of the South African spearfishery through the collection of biological and Fishers’ Ecological Knowledge (FEK) information on Oplegnathus conwayi, and human dimension information on the South African spearfishery. Monthly biological samples were collected through routine sampling (spearfishing) and augmented by recreational spearfishers. A total of 254 fish were collected from the warm-temperate coastal zone (East London – Cape Agulhas), 28 from the sub-tropical zone (Durban – East London) and 23 from the cool-temperate zone (Cape Agulhas – Cape Point). The results indicated that Oplegnathus conwayi is a slow-growing species, with a maximum recorded age of 27 years. The population sex ratio was skewed, with males dominant in the population (1M:0.6F). The length- and age-frequency distributions were, however, similar for both sexes. No significant differences were observed between male and female growth (LRT, p > 0.05), with the overall population growth curve being best described as L(t) = 697.15(1-e-0.06(t-6.30)). Males matured at a slightly larger size than females, however, no significant differences were observed (LRT, p > 0.05). The length- and age- at-50% maturity was 330 mm (FL) and 5.73 years for the full population, respectively. Histological analyses showed that Oplegnathus conwayi are asynchronous spawners with a gonochoristic reproductive style. Macroscopic staging and gonadosomatic index results indicated a protracted spawning season for Oplegnathus conwayi, with a peak in spring. A survey was designed and disseminated to collect FEK on the biology and population status of Oplegnathus conwayi and human dimension information on South Africa’s spearfishery. A total of 103 survey responses were received, of which 94 were regarded as specialised (spearfishers who had greater experience, skill and avidity, and maintained spearfishing as an important component of their lifestyle) spearfishers. Based on the responses of the specialist spearfishers, the top four main species caught by spearfishers from this survey were Seriola lalandi (13.9%), Pachymetopon grande (11.7%), Oplegnathus conwayi (11.4%) and Sparodon durbanensis (11%), and the majority of respondents indicated that there had been no changes in abundance, size and catches of these species in the years that they had been spearfishing. Respondents indicated that Oplegnathus conwayi are most commonly targeted in the Eastern Cape and are found at depths of up to 40 m. Respondents also indicated that there may be a seasonal onshore (Summer/Winter) and offshore (Summer/Winter) migration with year-round spawning and a peak in November, December and January. The incorporation of spearfishers into the data collection, both through the collection of specimens and their FEK, was beneficial to this study. Besides providing samples from a broader geographical range than the primary collection area, the collaboration with spearfishers has promoted the inclusion of this group into the management system. The findings of this study also suggest that FEK data can be more reliable if the concept of recreational specialisation is incorporated into data collection. While the FEK suggested that the population was stable, a stock assessment is necessary to fully understand the population status and implement management strategies. Nevertheless, the key life history characteristics (slow growth and late maturation) observed in this study are characteristic of species that is vulnerable to overexploitation, and thus the precautionary approach should be applied. The reproductive information collected in this study has provided information for the implementation of an appropriate size limit regulation for Oplegnathus conwayi. Here, a minimum size limit of 400 mm TL, which corresponds approximately with the length-at-50% maturity of 330 mm FL, would be appropriate to allow fish to mature and spawn, and reduce the likelihood of recruitment overfishing. Reduction in the bag limit from five to two fish per person per day may also be appropriate as a precautionary measure until a stock assessment has been completed. Finally, the incorporation of stakeholder into biological collection and the use of FEK may be a useful approach for other data deficient species and in countries with limited resources for ecological research. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Baseline description of the Benthic Biotopes for two Long-Term Ecological Research (LTER) stations in Algoa Bay, Agulhas ecoregion, South Africa
- Authors: Parker-Nance, Shirley
- Date: 2021-10-29
- Subjects: Benthic ecology South Africa Algoa Bay , Long-Term Ecological Research Program , Marine invertebrates South Africa Algoa Bay , Reef ecology South Africa Algoa Bay , Coastal zone management South Africa Algoa Bay , Reef fishes South Africa Algoa Bay , Ecological mapping South Africa Algoa Bay
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191680 , vital:45147 , 10.21504/10962/191680
- Description: Shallow coastal marine ecosystems provide important resources to society but are increasingly under threat from anthropogenic impacts. These systems form an interface between land and sea, providing valuable resources. Global environmental change, overexploitation, habitat transformation, pollution and policies aimed at short-term socio-economic gains are driving the loss of natural resources, productivity and biodiversity. Consequently, a comprehensive and holistic understanding of the current and future states of marine ecosystems is essential. This requires insight into the processes involved in maintaining genetic, species, habitat, community and biotope diversity at an ecosystem level. An understanding of ecosystem processes and the ability to detect changes in biodiversity, biotopes, seascape composition and ecosystem functioning require observation made over time and space. In response to this need, Long-Term Ecological Research (LTER) programmes such as those established by the South African Environmental Observation Network (SAEON) supported by the Department of Science and Innovation’s (DSI) Shallow Marine and Coastal Research Infrastructure (SMCRI) collect long–term observational data from different environments and systems. This study aimed to evaluate data collected as part of the developmental phase of a newly established benthic research platform. The datasets constructed are used to develop a baseline description of the benthic biotopes of two study areas within Algoa Bay. It aimed to gain insight into the feasibility of the methods used and the value of the data and derived essential biological variables (EVB). Assessing the sustainability of the programme over time was done through a practical evaluation of the methodology to be used and the technical feasibility of data collection and analysis. It furthermore aimed to assess the data usefulness in describing biodiversity at various scales and its sensitivity in reporting change. This pilot study provides valuable insight into data collection methodologies and introduces new sampling platforms. The baseline dataset consisted of data collected during the first 18 months of the SAEON Benthic Ecosystem Long-Term Ecological Research (BELTER) platform in Algoa Bay, Agulhas ecoregion, Western Indian Ocean, South Africa. This comprised of the collection of images for 150 m2 of the researched benthic seascape and 306 stereo video data streams. The 77 760 point dataset allowed the identification of 12 substrate types, 7 biotopes, 44 sub-biotope units, 377 sessile and sedentary benthic species and 51 ichthyofauna species. The described habitat and benthic communities and the defined benthic biotopes allowed for the assessment of biotope heterogeneity and the construction of a provisional distribution map for the broader biotopes. This work includes a study into the infra- and supra-benthic ichthyofauna associated with the defined biotopes and investigates the role habitat and benthic communities play in the distribution of these fish 3 assemblages. Lastly, it assesses the value of morphological traits and diversity indices for describing and comparing abiotic and biotic components of observed systems within the shallow coastal marine seascape. This study shows that species composition differs significantly between biotopes with habitat type playing a key role in the composition of the benthos. Substrate type, consolidated or unconsolidated, depth and the composition of the soft sediment is the most important determining factors. The White Sands Reef station has a higher species diversity than the St Croix Island Complex station with a higher percentage cover associated with the hard substrate. The dissimilarity between biotopes and communities are generally high although similarity within the biotopes or communities was found to be relatively low. This was considered indicative of high heterogeneity within the biotopes and a patch or mosaic-like distribution of communities within the broader biotope. A fine-scale a posteriori analysis of the data collected confirmed the high heterogeneous nature of both habitat and communities within the broader biotope. The description of the abiotic and biotic variables resulted in the identification of a diverse suite of biotope subunits. The character of the biotope hinges not only on the composition of the substrate and biota present but the contribution of smaller distinct biotopes subunits, their distribution and representation within broader biotopes and the degree these are shared with other broader biotopes. The distribution of these biotope units at different scales is believed to be important in understanding inherent diversity, niche partitioning and connectivity within a highly heterogeneous seascape. Ichthyofauna associated with the broader biotopes were indicative of the substrate type. Low profile reef systems with interspaced sandy stretches supported both reef fish and those typically associated with sandy substrates. Benthic biotopes associated characteristically with higher profile reef systems and less sand or soft sediment were mainly utilized by reef-associated fish species. Substrate type, depth and seasonality were found to be important factors in the observed composition and distribution of ichthyofauna over the seascape. Although fish species were found to have a wide distribution and made use of multiple biotopes the average abundance of the species within the observed assemblages differed. Analysis of ichthyofauna species composition indicated that observed fish assemblages were homogeneous within five of the seven biotopes. Broader biotopes that were found to be significantly different between sample locations are characterised by a diverse complement of biotope subunits and are highly heterogeneous. Traits and diversity indices are important tools for assessing and comparing different systems within the seascape, both spatially and temporally. The classification of the biota into broader phylogenetic groups indicated a significant difference between biotopes. This is especially useful when detailed 4 analysis or species identification is not possible or the skill set is not available. Morphological traits included in this study informed on the physical structure of the communities present and in combination with substrate type provided insight into the three-dimensional structure of the biotope. Species diversity, abundance, density estimates and the Shannon-Weiner diversity index were found to be the most useful diversity indices characterising and comparing biotopes. This was less so for ichthyofauna. Significant differences in the number of species observed were evident only between consolidated and unconsolidated dominated substrates. Although there was no significant difference in the number of individuals observed, both the Shannon-Weiner and Simpson Diversity indices were able to highlight differences in the fish assemblages observed for the different biotopes. The data collected, although permitting a comprehensive baseline assessment of the benthic environment for two research stations within the SAEON Algoa Bay LTER Sentinel Site, is temporally limited. The ichthyofauna dataset used was small and it is understood that the addition of length-frequency analysis of observed ichthyofauna will benefit our understanding of the biotope use by infra- and supra-benthic fish species over their life history within the larger seascape. Seasonal differences were evident and it is expected that datasets spanning several years, including LTER stations within different marine ecosystems types, will provide valuable insights on system dynamics in the short and long term both spatially and temporally. This study is the first attempt to evaluate the methodology developed and data collected in the South African Environmental Observation Network’s, Elwandle Coastal Node as part of the Shallow Marine and Coastal Research Infrastructure Benthic Ecosystem Long-Term Ecological Research (BELTER) platform. Newly designed and developed sample equipment and a sampling regime allowed for the collection of data on a long-term basis. The study was successful in the description of the biotope and biotope subunits for two research stations in Algoa Bay. It permitted the construction of comprehensive species lists for both benthic sessile and sedentary biota and the associated ichthyofauna. The subset of data used was successful in reporting on both spatial and temporal change. This work demonstrates that in the absence of detailed species identifications, traits may be used to describe habitat and community structure and report on abiotic and biotic biotope characteristics. This study furthermore allowed for the comparison of a comprehensive suite of diversity indices highlighting indices that may be especially useful in routine BELTER reporting. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Evaluating and predicting impacts of Australian redclaw crayfish Cherax quadricarinatus and Louisiana red swamp crayfish Procambarus clarkii invasions
- Authors: Madzivanzira, Takudzwa Comfort
- Date: 2021-10-29
- Subjects: Cherax Africa , Procambarus clarkii Africa , Freshwater crabs Africa , Crayfish Zambezi River , Crayfish Food Zambezi River , Aquatic biodiversity Africa , Conservation biology Zambezi River , Fishing Catch effort Africa , Introduced freshwater organisms Africa , Fish populations Africa , Functional response (FR)
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191137 , vital:45064 , 10.21504/10962/191137
- Description: Freshwater crayfish have become one of the most widely introduced freshwater taxa globally. Crayfish introductions have not spared the African continent, which, apart from Madagascar, is naturally devoid of native freshwater crayfish. These introductions are of concern because invasive crayfish have generally been shown to cause strong impacts on recipient ecosystems outside Africa. This study therefore set out to compile up-to-date information regarding crayfish introductions in Africa, their pathways and distributions and to improve our understanding of the nature and magnitude of their environmental impacts. A systematic review revealed that nine crayfish species have been introduced into the continent with five of those, Astacus astacus, Cherax quadricarinatus, Faxonius limosus, Procambarus clarkii and Procambarus virginalis, having established naturalised populations in fourteen African countries (Chapter 2). The main driver of these crayfish introductions was to provide socio-economic benefits but there is limited evidence of success. The thesis further documents attempts made to address crayfish knowledge gaps in Africa, including standardisation of C. quadricarinatus sampling gear (Chapter 3), determination of the distribution of C. quadricarinatus in the recently invaded Upper Zambezi Basin (Chapter 4), and predicting ecological and socioeconomic impacts of two crayfish species that are spreading rapidly in Southern Africa, namely, C. quadricarinatus and P. clarkii (Chapters 5 – 8). To standardise C. quadricarinatus sampling methods in Africa, two methods used in Southern Africa were compared and the Promar® collapsible trap baited with dry pellets was recommended as the best approach for C. quadricarinatus abundance studies due to the high catch per unit effort (CPUE), probability of capture and the suitability of dry dog food as a standard bait. This standard approach was used for crayfish surveys in the Zambezi Basin to comprehensively determine the spread and establishment of C. quadricarinatus across the basin. The establishment of C. quadricarinatus in the Barotse Floodplain, Upper Zambezi Floodplains freshwater ecoregion was confirmed. Although the probability of capture and catch per unit effort (CPUE) of C. quadricarinatus in the Barotse floodplain were similar to that of older invasions in the basin (Lake Kariba and Kafue River), morphometric differences among C. quadricarinatus populations sampled from these invaded regions were detected. Although crayfish were not detected in other regions, for example, the Okavango Floodplains ecoregions, C. quadricarinatus have the potential to spread at a downstream and upstream rate of 49 and 12 km·year-1, impacting native biota therein. To evaluate the potential for ecological impacts, the consumer-resource dynamics of C. quadricarinatus and P. clarkii were described in comparison to a native trophic analogue, the freshwater crab of the Potamonautes genus, preying on various native taxa ubiquitous to African aquatic and terrestrial ecosystems. The use of functional response (FR) and consumption experiments in this study showed the potential impacts of the two crayfish species on native resources and on resources that support livelihoods in invaded ecosystems. This in most cases was a result of their high attack parameter, which also resulted in high functional responses ratios (FRRs) compared to native crabs. The crayfish FR, FRRs and consumption rates were mostly enhanced under the high temperature treatments. The FRs and consumption results were then combined with the field biomasses of crayfish and crabs to calculate the relative impact potential (RIP) to successfully predict the degree of impact caused by crayfish species relative to crabs. Crayfish species consistently displayed RIP scores > 1 relative to the native crab irrespective of region, which were higher for the summer than the winter season, suggesting greater impact of the invaders compared to the native species. This study further estimated the socioeconomic losses due to catch spoilage by C. quadricarinatus which are up to 1500 t per year in the invaded Kafue River Basin, which translates to an annual income loss of US$ 2 million. Information provided in this study is vital for conservation management and to compel policymakers to develop appropriate conservation management tools within regulatory frameworks, which could stop or minimise the spread of crayfish species and protect Africa from further losing aquatic biodiversity. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
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- Date Issued: 2021-10-29
Mitigating salt accumulation in recycled brewery effluent through the integration of water treatment, agriculture and aquaculture
- Authors: Mabasa, Nyiko Charity
- Date: 2021-10-29
- Subjects: Brewery waste South Africa Eastern Cape , Recycling (Waste, etc.) South Africa Eastern Cape , Water reuse South Africa Eastern Cape , Irrigation South Africa Eastern Cape , Sewage Purification Anaerobic treatment , Constructed wetlands , Aquaculture
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191126 , vital:45063 , 10.21504/10962/191126
- Description: Water scarcity in South Africa, and globally, presents challenges for industries. It is imperative to develop responsible water use, such as recycling and reusing wastewater from food processing industries such as breweries. The Ibhayi Brewery (SAB Ltd) employs a combination of sustainable treatment processes that include anaerobic digestion (AD), primary facultative ponds (PFP), high rate algal ponds (HRAP) and constructed wetlands (CW) to treat brewery effluent on an experimental scale. The constituent concentrations of these experimentally treated effluents are within the ranges prescribed by local regulations to allow for potential downstream use in agriculture and aquaculture. However, the sodium content in this treated effluent, which originates from upstream cleaning agents and pH control at the onsite effluent treatment facility, is a constraint to the downstream use of brewery effluent. This study addresses the salt problem, by investigating the potential of either reducing/eliminating salt addition at source, or developing alternative techniques for downstream agriculture to mitigate the effects of salt accumulation caused by irrigation with brewery effluent. Four salt-tolerant test crops; Swiss chard (Beta vulgaris), saltbush (Atriplex nummularia), Salicornia meyeriana and sorghum (Sorghum bicolor), grew efficiently in brewery effluent irrigated soils but did not stop sodium accumulation in the growth medium. Swiss chard had the best growth with a wet biomass accumulation of 8,173 g m-2, due to the plant’s ability to tolerate saline conditions and continuous cropping. Crop rotation, to limit effects of nutrient depletion in soil, had no significant effect on plant growth suggesting soils were adequately able to provide micro-nutrients in the short-term. Prolonged irrigation with brewery effluent can lead to sodium accumulation in the soil, which was successfully controlled through the addition of soil amendments (gypsum and Trichoderma cultures). These reduced soil sodium from a potentially limiting level of 1,398 mg L-1 to the acceptable levels of 240 mg L-1 and 353 mg L-1 respectively, mainly through leaching. However only Trichoderma improved Swiss chard production to 11,238 g m-2. While crop rotation in this work did not contribute to mitigating the problem of salt accumulation, soil amended with Trichoderma appears to be a potential solution when brewery effluent is reused in agriculture. In an alternative to soil cultivation, CWs were trialled with no significant differences in the sodium concentration of brewery effluent treated along a 15 m lateral flow CW, which could be attributed to evapotranspiration. This was notably accompanied by a desirable 95.21% decrease in ammonia from inlet to outlet resulting in significant improvement in water quality for reuse in aquaculture where ammonia levels are important limiting constraints. While CWs remain a suitable brewery effluent treatment solution, this technology requires additional modelling and optimisation in order to mitigate the problem of salt accumulation in the reuse of treated brewery effluent in agriculture and aquaculture. This research demonstrates the baseline information for such modelling and optimisation. African catfish (Clarias gariepinus) grew in CW treated brewery effluent; however, this growth was moderate at 0.92% bw day-1, whereas Mozambique tilapia (Oreochromis mossambicus) were shown to be unsuited to growth in this system and lost weight with an average specific growth rate (SGR) of -0.98% bw day-1; and both fish species presenting with health related concerns. Hardy fish species such as African catfish can be cultured in brewery effluent, but with risk involved. This was a preliminary study to develop parameters for future dimensional analysis modelling to allow optimisation of the CW, based on nutrient removal rates obtained which will allow for improved downstream aquaculture by reducing or eliminating risks presented in this study. This work has also contributed to a foundation for the development of guidelines that use a risk-based approach for water use in aquaculture. Alternatives to the current in place cleaning agents were considered to mitigate the effects of salt accumulation. Sodium is introduced into the effluent via the use of sodium hydroxide and sodium chlorite for cleaning and disinfection in the brewery, as well as through effluent pH adjustment in the AD plant. The widespread use of outdated legacy cleaning systems and pH adjustment regimes is entrenched in the brewery standard operating procedures (SOP). A cost-benefit analysis (CBA) demonstrated that a change of cleaning and disinfecting regimes to hydrogen peroxide in the brewery, and magnesium hydroxide pH adjustment in the effluent treatment plant addresses the sodium issue upstream in the brewery practically eliminating sodium from the effluent. In addition, a life cycle analysis (LCA) was carried out to assess the environmental impacts associated with the alternative cleaning and pH adjustment scenarios. The LCA showed that electricity consumption during use phase of the chemicals for respective purposes, as well as their production activities were major contributors to the significant environmental impact categories that were assessed. The cleaning scenario employing the use of hydrogen peroxide for both cleaning and disinfection was found to be the most environmentally sustainable. This was attributed to the reduced number of chemicals used compared to the other cleaning scenarios. Dolomitic lime was the pH adjustment alternative with the lowest average environmental impact; but, however, had a higher impact on freshwater eutrophication which is of major concern if the effluent will be reused for irrigation. Magnesium hydroxide was therefore considered to be the better option as a sodium hydroxide alternative for pH adjustment. This mitigates salt accumulation, making treated brewery effluent suitable for reuse in high value downstream agriculture and aquaculture, while employing more environmentally sustainable technologies. Notably, this converts brewery effluent from a financial liability to Ibhayi Brewery, into a product containing water and nutrients that generate income, improve food security, and can create employment in downstream agriculture and aquaculture in a sustainable manner. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
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- Date Issued: 2021-10-29
Settlement and metamorphosis in the veliger larvae of the South African abalone Haliotis midae exposed to ambient grown biofilms treated with conspecific mucous
- Authors: Van Staden, Jefferson Luke
- Date: 2021-10-29
- Subjects: Haliotis midae , Biofilms , Haliotis midae Larvae Behavior , Haliotis midae Metamorphosis , Biosecurity , Aquaculture , Metamorphosis , Attachment mechanisms (Biology) , Mucous
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/192187 , vital:45203
- Description: The South African abalone, Haliotis midae, is a commercially important species of mollusc which contributes significantly to the value of the South African mariculture industry. One of the primary challenges experienced by abalone farmers is the consistent production of juvenile abalone (spat) in sufficient volumes to keep stocking farms and facilitate expansion of the industry. One of the key production bottlenecks of H. midae is achieving adequate levels of larval attachment and metamorphosis (settlement). The larvae of H. midae are settled on polycarbonate plates which have been pre-conditioned with biofilms in seawater which is pumped ashore onto farms. The seasonal variability in settlement success reported by hatchery managers in South Africa is hypothesised to be as a result of different diatom species compositions colonising the settlement plates at different times of the year, with settlement success being lowest during the winter months. The following study investigated whether the addition of conspecific mucous to biofilms could result in elevated settlement success, and whether there was potential for sterilisation of this mucous. A novel method of mucous application, spraying it onto the plates as opposed to pre-grazing, was tested in settlement assays and the trials revealed the following results: • The addition of H. midae mucous induced significantly more larvae to attach to settlement plates, when mucous was harvested around the spawning season. • Elevated attachment of larvae on mucous treated plates did not result in more post-larvae occupying the plates at the end of trials, and increased mortality is likely attributed to introduction of pathogens in conjunction with mucous. • No increase in the final proportion of settled larvae which had metamorphosed or the rate at which they metamorphosed was observed between mucous application treatments and biofilm only treatments. Subsequent trials assessed whether methods of mucous handling could reduce the biosecurity risk associated with mucous use, and so mucous was either UV irradiated or autoclaved. These trials revealed the following findings: • No difference in attachment was seen between any treatments, including the untreated mucous. This is contrary to the findings of our initial experiments and illustrates that the attachment-inducing properties within mucous may be seasonally expressed. ii • Numbers of observed larvae/post-larvae on plates applied with UV and autoclaved mucous where less stable than biofilms only, especially in the second trial, illustrating that mucous still presents a biosecurity risk even after undergoing these handling methods as it may act as a substrate on which pathogenic bacteria could colonise. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
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- Date Issued: 2021-10-29
Taxonomic, ecological and biogeographic re-evaluation of temperate stream fishes in Southern Africa: a case study of the enteromius anoplus complex
- Authors: Kambikambi, Manda Juliet
- Date: 2021-10-29
- Subjects: Stream ecology South Africa , Barbs (Fish) Ecology South Africa Cape Fold Belt , Barbs (Fish) Ecology South Africa Highveld (Region) , Barbs (Fish) Ecology South Africa Amathole District Municipality , Biotic communities South Africa , Fishes Classification , Cryptic species , Chubbyhead barb
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191023 , vital:45051 , 10.21504/10962/191023
- Description: Worldwide, cryptic species, which comprise two or more distinct species that are classified as one due to their morphological similarity, are more common than previously thought. In South Africa, the chubbyhead barb, Enteromius anoplus (Weber, 1897), is the most widespread freshwater fish species. The widespread occurrence of this species across different river basins raised questions on its taxonomic status due to the likely occurrence of hidden diversity. This further raised the need to evaluate the ecological patterns associated with likely occurrence of such hidden diversity. Phylogenetic analyses of the cytochrome b gene of E. anoplus populations across South Africa revealed the occurrence of four genetically distinct species. These findings supported the restoration Enteromius cernuus (Barnard 1943) stat. rev. from the Olifants River system; the restoration of Enteromius anoplus sensu stricto (Weber 1897) stat. rev. from the Gouritz River system; the redescription of Enteromius oraniensis (Barnard 1943) stat. rev. from the Orange River system; and the description of a new species, Enteromius mandelai sp. nov. from the Eastern Cape rivers. Analyses of morphometric and meristic data revealed that these species were differentiated based on barbel length and number of lateral line scales. Ecological studies on Enteromius mandelai were conducted within headwater streams of major river systems in the Eastern Cape region. These headwater streams had different catchment characteristics ranging from near-natural to anthropogenically-perturbed mainly due to agriculture-related disturbances and invasion of riparian zones by non-native plants. Stable isotope analysis provided evidence of trophic plasticity for E. mandelai across the different headwater streams. Specifically, E. mandelai exhibited large isotopic niches in agriculture-disturbed headwater streams, whereas small isotopic niches were observed in headwater streams invaded by non-native plants. Because of the evidence of trophic plasticity for E. mandelai, this study further hypothesized that this species would exhibit variable environmental niche patterns related to its distribution, abundance and the presence of contra-specifics due to different abiotic factors across its range. Enteromius mandelai was generally most abundant at sites with high total dissolved solids and sand substratum, which was characteristic of large pool habitats, and least abundant at sites with high turbidity. In the Great Fish River, E. mandelai occurred as the only species in most headwater sites, whereas in the Keiskamma and Buffalo River systems, it co-occurred with Amatolacypris trevelyani and Sandelia bainsii. Enteromius mandelai was, nevertheless, found to be ubiquitous together with having wide environmental niches, and exhibited no discernible patterns in its habitat associations. The taxonomic re-evaluation of the E. anoplus complex, which provided evidence of the existence of new species, has implications for the biogeographic zonation of the ichthyofauna of the Cape Fold Ecoregion (CFE), Amathole-Winterberg Highlands Ecoregion (AWHE) and the Southern Temperate Highveld Ecoregion (STHE). For example, the currently recognised southern limit of the STHE, which encompasses the AWHE, is based on the occurrence of E. anoplus, Enteromius pallidus and Labeo umbratus. However, evidence from this and other recent studies indicate the occurrence of either new species or distinct lineages in the southern-most section of the STHE, which is consistent with the patterns observed in the CFE. Comparison of taxonomic composition showed that species in the eastern part of the CFE were similar to species in the AWHE and the southern-most section of the STHE. Because of the close affinities among most of the new taxa in these regions, this study proposes that the current delimitation of the CFE should be reviewed by extending it to include the AWHE and sections of the STHE. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
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- Date Issued: 2021-10-29