Quantifying the impacts of cactus biological control agents in South Africa
- Authors: Mnqeta, Zezethu
- Date: 2022-04-08
- Subjects: Cactus Biological control South Africa , Noxious weeds South Africa , Invasive plants Biological control South Africa , Insects as biological pest control agents South Africa , Cochineal insect South Africa , Mealybugs South Africa , Agricultural productivity South Africa
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/294631 , vital:57239 , DOI 10.21504/10962/294631
- Description: Invasive alien cacti are prominent weeds that threaten indigenous biodiversity and have a negative impact on agricultural productivity in South Africa. These plants are problematic because they form dense thickets that reduce the carrying capacity of rangelands; restrict the movement of livestock and wildlife thus reducing access to shade and water sources; and are directly harmful to livestock, wildlife and people due to their sharp spines. Biological control is the most effective, affordable and environmentally friendly method to control invasive alien cacti and minimize their negative impacts. Cochineal insects (Dactylopius spp.: Dactylopiidae) and the gall-forming mealybug, Hypogeococcus sp. (Pseudococcidae) are used as biological control agents for cacti. The agents are however poor dispersers, so mass-rearing and augmentative releases are required in order to establish the agents at sites where they are needed. This study aimed to evaluate the mass-rearing and release efforts of cactus biological control in South Africa, quantify the impact of the biological control agents on cactus plant populations through long-term monitoring, and assess the benefits accrued due to the biological control agents through the perceptions of land-users. An assessment of the effectiveness of the release effort for cactus biological control agents was conducted by comparing where biological control agents have been released with the known distribution of the target weeds. Only 26% of the quarter degree squares that are known to be occupied by invasive alien cacti have had biological control agents released in them. This indicated that the mass-rearing and release efforts in South Africa are inadequate and should be increased, especially in areas where few releases have been made and many cacti are present, such as the Limpopo Province. The impact of the biological control agents on cactus plant populations was assessed by monitoring agent densities, target plant densities and target plant reproductive outputs before and after releases. Plant biomass and reproductive output were reduced by biological control agents for three of the target weeds that were assessed, while the duration of the study was too short to measure reductions for the fourth target weed. Benefits to land-users were then quantified through a questionnaire survey. Land-users perceived biological control as an effective management option, with 81% of the land-users reporting that there was less invasive alien cactus after releasing biological control agents on their land. Forty-nine percent of the land-users believed that the negative impacts of the cactus had been reduced and that they benefited more from their land since control was achieved. Since land-users were only interviewed within four years of the releases being conducted, it is expected that the percentage of land-users who gained benefits from biological control will increase in future. Ninety-seven percent of the land-users stated that the agents were safe and had not fed on any other plants or had any detrimental impacts. These perceptions indicated that land-users regarded biological control as a safe and effective method of controlling invasive alien cacti. This study confirms that biological control is an effective and safe way of controlling invasive alien Cactaceae. It is also the first to assess some of the benefits that land-users have accrued due to biological control of cactus weeds. It is however evident that a greater mass-rearing and release effort is required for South Africa to get the maximum benefits possible from the use of the biological control agents for cactus weeds that are available in the country. , Izityalo ze-cactus ezisuka kwamanye amazwe zilukhula olubalaseleyo, olwenza ingxaki kwintlobo ngeentlobo zezityalo nezilwanyana kwaye ezizityalo zinefuthe neziphumo ezingalunganga kwimveliso yezolimo eMzantsi Afrika. Ezi zizityalo ziyingxaki kuba zenza amatyholo ashinyeneyo athi anciphise umthamo wokusebenzisa umhlaba: zinqanda ukuhamba nogkukhululekileyo kwemfuyo nezilwanyana zasendle ngokwenza oko zingakwazi ukufikelela emthuzini xa kutshisa nakwimithombo yamanzi yokusela; zikwayiyo nengozi kwimfuyo, izilwanyana zasendle kunye nabantu ngenxa yamave abukhali afumaneka kwezizityalo. Ukulawula nokwehliza ubunzini nezinga lemigcipheko yezizityalo, kusetyenziswa indlela ekuthiwa yi-biological control. Lendlela yeyona ndlela isebenza ngokuphucukileyo, efikelelayo, nengenabungozi kokusingqongileyo. Izinambuzane ze- cochineal (i-Dactylopius spp.: Dactylopiidae) kunye ne-mealybug, i-Hypogeococcus sp. (Pseudococcidae) zisetyenziswe njengezixhobo ze-biological control ezinceda ukulawula ezizityalo ze-cactus zingafunekiyo. Ingxaki yazo ezizinambuzane zizixhobo ze-biological control zingentla kukuba azikwazi kuzisasaza ngokwazo ukuba zifikelele nakwizityalo ezikude ngoko ke ukukhuliswa nokukhutshwa ngobuninzi bazo kuyafuneka ukukhawulelana nalengxaki kunye nokwandisa amathuba wokuba zifikelele kuzozonke izityalo ze-cactus ekufuneka zizilawule. Olu phononongo lujolise ekuvavanyeni iinzame zokukhulisa ngobuninzi nokukhupha ezezinambuzane zizixhobo ze-bioloigical control zokulawula izityalo ze-cactus eMzantsi Afrika, ukujonga ubungakanani befuthe notshintsho elenziwa zezinambuzane zizixhobo ze-bioloigical control kwizityalo ze-cactus emva kwexesha elide lokuzijonga, kunye nokuvavanya inzuzo efunyenwe ngenxa yokulawula ezizityalo ze-cactus ngokwemibono yabasebenzisi bomhlaba. Uvavanyo lweenzame zokukhutshwa kwezixhobo zezixhobo zezinambuzane ze-bioloigical control kwizityalo ze-cactus lwenziwa ngokuthelekisa iindawo apho izixhobo zezinambuzane ze-biological control zikhutshwe khona kunye neendawo apho izityalo ze-cactus kwaziwayo ukuba ziyafumaneka khona. Yi-26% kuphela yesikwere sekota eyaziwayo ukuba kukhona izityalo ze-cactus nalapho kukhutshwe khona kwezinambuzane ezizixhobo ze-biological control. Oku kubonisa ukuba iinzame zokukhulisa nokukhutshwa kwezinambuzane ezizixhobo ze-biological control eMzantsi Afrika azanelanga kwaye kufuneka zandiswe, ngakumbi kwiindawo apho kukho ukhutsho olumbalwa olwenziweyo kunye nezityalo ze-cactus ezininzi ezifumaneka khona, njengePhondo laseLimpopo. Iimpembelelo yokukhutshwa kwezinambuzane ezizixhobo ze-biological control kwizityalo ze-cactus zavavanywa ngokujonga ubunizi bezinambuzane ezizixhobo ze-biological control, ukuxinana kwezityalo ze-cactus ekujoliswe kuzo kunye nemveliso yokuzala kwezityalo ze-cactus phambi nasemva kokuba kukhutshwe izinambuzane ezizixhobo ze-biological control. Ubungakanani bezityalo ze-cactus kunye nemveliso yokuzala ziye zacutheka emva kokukhutshwa kwezinambuzane ezizixhobo ze-biological control kwinzityalo ezintathu ze-cactus ebekujoliswe uvavanyo kuzo, ngelixa ixesha lophononongo lalifutshane kakhulu ukuvavanya unciphiso kwisityalo se-cactus sesine. Izibonelelo zabasebenzisi bomhlaba zaye zavavanywa kusetyenziswa uhlobo lwemibuzo. Abasebenzisi bomhlaba balubona ukusetyenziswa kwezinambuzane ezizixhobo ze-biological control njengendlela yolawulo olusebenzayo, yi81% yabasebenzisi bomhlaba echaze ukuba izityalo ze-cactus zecuthekile emva kokukhutshwa kwezinambuzane ezizixhobo ze-biological control emhlabeni wabo. Amashumi amane anesithoba eepesenti zabasebenzisi bomhlaba bakholelwa ukuba impembelelo ezingalunganga ze-cactus zincitshisiwe kwaye baxhamle kakhulu kumhlaba wabo okoko lwaphunyenzwa. Oludliwano-ndlebe belwenziwe kubasebenzisi bomhlaba kwisithuba seminyaka emine emva kokuba kukhutshwe izinambuzane ezizixhobo ze-biological control, kulindeleke ukuba ipesenti yabasebenzisi bomhlaba abathe bafumana izibonelelo kwi-biological control lonyuke kwixesha elizayo. Amashumi alithoba anesixhenxe ekhulwini abasebenzisi bomhlaba bachaze ukuba izinambuzane ezizixhobo ze-biological control zikhuselekile kwaye khange zidle kuzo naziphi na ezinye izityalo ezingezi eze-cactus ebekujoliswe kuzo okanye zineempembelelo eyingozi. Ezi mbono ziyabonisa ukuba abasebenzi bomhlaba bayithatha i-biological control njengendlela ekhuselekileyo nesebenzayo yokulawula izityalo ze-cactus zamanye amazwe. Olu phononongo luqinisekisa ukuba ulawulo olusebenzisa izinambuzane ezizixhobo ze-biological control yindlela esebenzayo nekhuselekileyo yokulawula iCactaceae yamanye amazwe. Ikwangolokuqala ukuvavanya ezinye zezibonelelo ezizuzwe ngabasebenzisi bomhlaba ngenxa ye-biological control yezityalo ze-cactus. Nangona kunjalo kucacile ukuba ukwandisa inzame zokukhulisa nokukhupha ngobuninzi izinambuzane ezizixhobo ze-biological control kuyafuneka ukuze uMzantsi Afrika ufumane izibonelelo eziphakamileyo enokubakho ngokusetyenziswa kwe zinambuzane ezizixhobo ze-biological control zokulawula ukhula lwe-cactus olukhoyo kweli lizwe. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
- Date Issued: 2022-04-08
- Authors: Mnqeta, Zezethu
- Date: 2022-04-08
- Subjects: Cactus Biological control South Africa , Noxious weeds South Africa , Invasive plants Biological control South Africa , Insects as biological pest control agents South Africa , Cochineal insect South Africa , Mealybugs South Africa , Agricultural productivity South Africa
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/294631 , vital:57239 , DOI 10.21504/10962/294631
- Description: Invasive alien cacti are prominent weeds that threaten indigenous biodiversity and have a negative impact on agricultural productivity in South Africa. These plants are problematic because they form dense thickets that reduce the carrying capacity of rangelands; restrict the movement of livestock and wildlife thus reducing access to shade and water sources; and are directly harmful to livestock, wildlife and people due to their sharp spines. Biological control is the most effective, affordable and environmentally friendly method to control invasive alien cacti and minimize their negative impacts. Cochineal insects (Dactylopius spp.: Dactylopiidae) and the gall-forming mealybug, Hypogeococcus sp. (Pseudococcidae) are used as biological control agents for cacti. The agents are however poor dispersers, so mass-rearing and augmentative releases are required in order to establish the agents at sites where they are needed. This study aimed to evaluate the mass-rearing and release efforts of cactus biological control in South Africa, quantify the impact of the biological control agents on cactus plant populations through long-term monitoring, and assess the benefits accrued due to the biological control agents through the perceptions of land-users. An assessment of the effectiveness of the release effort for cactus biological control agents was conducted by comparing where biological control agents have been released with the known distribution of the target weeds. Only 26% of the quarter degree squares that are known to be occupied by invasive alien cacti have had biological control agents released in them. This indicated that the mass-rearing and release efforts in South Africa are inadequate and should be increased, especially in areas where few releases have been made and many cacti are present, such as the Limpopo Province. The impact of the biological control agents on cactus plant populations was assessed by monitoring agent densities, target plant densities and target plant reproductive outputs before and after releases. Plant biomass and reproductive output were reduced by biological control agents for three of the target weeds that were assessed, while the duration of the study was too short to measure reductions for the fourth target weed. Benefits to land-users were then quantified through a questionnaire survey. Land-users perceived biological control as an effective management option, with 81% of the land-users reporting that there was less invasive alien cactus after releasing biological control agents on their land. Forty-nine percent of the land-users believed that the negative impacts of the cactus had been reduced and that they benefited more from their land since control was achieved. Since land-users were only interviewed within four years of the releases being conducted, it is expected that the percentage of land-users who gained benefits from biological control will increase in future. Ninety-seven percent of the land-users stated that the agents were safe and had not fed on any other plants or had any detrimental impacts. These perceptions indicated that land-users regarded biological control as a safe and effective method of controlling invasive alien cacti. This study confirms that biological control is an effective and safe way of controlling invasive alien Cactaceae. It is also the first to assess some of the benefits that land-users have accrued due to biological control of cactus weeds. It is however evident that a greater mass-rearing and release effort is required for South Africa to get the maximum benefits possible from the use of the biological control agents for cactus weeds that are available in the country. , Izityalo ze-cactus ezisuka kwamanye amazwe zilukhula olubalaseleyo, olwenza ingxaki kwintlobo ngeentlobo zezityalo nezilwanyana kwaye ezizityalo zinefuthe neziphumo ezingalunganga kwimveliso yezolimo eMzantsi Afrika. Ezi zizityalo ziyingxaki kuba zenza amatyholo ashinyeneyo athi anciphise umthamo wokusebenzisa umhlaba: zinqanda ukuhamba nogkukhululekileyo kwemfuyo nezilwanyana zasendle ngokwenza oko zingakwazi ukufikelela emthuzini xa kutshisa nakwimithombo yamanzi yokusela; zikwayiyo nengozi kwimfuyo, izilwanyana zasendle kunye nabantu ngenxa yamave abukhali afumaneka kwezizityalo. Ukulawula nokwehliza ubunzini nezinga lemigcipheko yezizityalo, kusetyenziswa indlela ekuthiwa yi-biological control. Lendlela yeyona ndlela isebenza ngokuphucukileyo, efikelelayo, nengenabungozi kokusingqongileyo. Izinambuzane ze- cochineal (i-Dactylopius spp.: Dactylopiidae) kunye ne-mealybug, i-Hypogeococcus sp. (Pseudococcidae) zisetyenziswe njengezixhobo ze-biological control ezinceda ukulawula ezizityalo ze-cactus zingafunekiyo. Ingxaki yazo ezizinambuzane zizixhobo ze-biological control zingentla kukuba azikwazi kuzisasaza ngokwazo ukuba zifikelele nakwizityalo ezikude ngoko ke ukukhuliswa nokukhutshwa ngobuninzi bazo kuyafuneka ukukhawulelana nalengxaki kunye nokwandisa amathuba wokuba zifikelele kuzozonke izityalo ze-cactus ekufuneka zizilawule. Olu phononongo lujolise ekuvavanyeni iinzame zokukhulisa ngobuninzi nokukhupha ezezinambuzane zizixhobo ze-bioloigical control zokulawula izityalo ze-cactus eMzantsi Afrika, ukujonga ubungakanani befuthe notshintsho elenziwa zezinambuzane zizixhobo ze-bioloigical control kwizityalo ze-cactus emva kwexesha elide lokuzijonga, kunye nokuvavanya inzuzo efunyenwe ngenxa yokulawula ezizityalo ze-cactus ngokwemibono yabasebenzisi bomhlaba. Uvavanyo lweenzame zokukhutshwa kwezixhobo zezixhobo zezinambuzane ze-bioloigical control kwizityalo ze-cactus lwenziwa ngokuthelekisa iindawo apho izixhobo zezinambuzane ze-biological control zikhutshwe khona kunye neendawo apho izityalo ze-cactus kwaziwayo ukuba ziyafumaneka khona. Yi-26% kuphela yesikwere sekota eyaziwayo ukuba kukhona izityalo ze-cactus nalapho kukhutshwe khona kwezinambuzane ezizixhobo ze-biological control. Oku kubonisa ukuba iinzame zokukhulisa nokukhutshwa kwezinambuzane ezizixhobo ze-biological control eMzantsi Afrika azanelanga kwaye kufuneka zandiswe, ngakumbi kwiindawo apho kukho ukhutsho olumbalwa olwenziweyo kunye nezityalo ze-cactus ezininzi ezifumaneka khona, njengePhondo laseLimpopo. Iimpembelelo yokukhutshwa kwezinambuzane ezizixhobo ze-biological control kwizityalo ze-cactus zavavanywa ngokujonga ubunizi bezinambuzane ezizixhobo ze-biological control, ukuxinana kwezityalo ze-cactus ekujoliswe kuzo kunye nemveliso yokuzala kwezityalo ze-cactus phambi nasemva kokuba kukhutshwe izinambuzane ezizixhobo ze-biological control. Ubungakanani bezityalo ze-cactus kunye nemveliso yokuzala ziye zacutheka emva kokukhutshwa kwezinambuzane ezizixhobo ze-biological control kwinzityalo ezintathu ze-cactus ebekujoliswe uvavanyo kuzo, ngelixa ixesha lophononongo lalifutshane kakhulu ukuvavanya unciphiso kwisityalo se-cactus sesine. Izibonelelo zabasebenzisi bomhlaba zaye zavavanywa kusetyenziswa uhlobo lwemibuzo. Abasebenzisi bomhlaba balubona ukusetyenziswa kwezinambuzane ezizixhobo ze-biological control njengendlela yolawulo olusebenzayo, yi81% yabasebenzisi bomhlaba echaze ukuba izityalo ze-cactus zecuthekile emva kokukhutshwa kwezinambuzane ezizixhobo ze-biological control emhlabeni wabo. Amashumi amane anesithoba eepesenti zabasebenzisi bomhlaba bakholelwa ukuba impembelelo ezingalunganga ze-cactus zincitshisiwe kwaye baxhamle kakhulu kumhlaba wabo okoko lwaphunyenzwa. Oludliwano-ndlebe belwenziwe kubasebenzisi bomhlaba kwisithuba seminyaka emine emva kokuba kukhutshwe izinambuzane ezizixhobo ze-biological control, kulindeleke ukuba ipesenti yabasebenzisi bomhlaba abathe bafumana izibonelelo kwi-biological control lonyuke kwixesha elizayo. Amashumi alithoba anesixhenxe ekhulwini abasebenzisi bomhlaba bachaze ukuba izinambuzane ezizixhobo ze-biological control zikhuselekile kwaye khange zidle kuzo naziphi na ezinye izityalo ezingezi eze-cactus ebekujoliswe kuzo okanye zineempembelelo eyingozi. Ezi mbono ziyabonisa ukuba abasebenzi bomhlaba bayithatha i-biological control njengendlela ekhuselekileyo nesebenzayo yokulawula izityalo ze-cactus zamanye amazwe. Olu phononongo luqinisekisa ukuba ulawulo olusebenzisa izinambuzane ezizixhobo ze-biological control yindlela esebenzayo nekhuselekileyo yokulawula iCactaceae yamanye amazwe. Ikwangolokuqala ukuvavanya ezinye zezibonelelo ezizuzwe ngabasebenzisi bomhlaba ngenxa ye-biological control yezityalo ze-cactus. Nangona kunjalo kucacile ukuba ukwandisa inzame zokukhulisa nokukhupha ngobuninzi izinambuzane ezizixhobo ze-biological control kuyafuneka ukuze uMzantsi Afrika ufumane izibonelelo eziphakamileyo enokubakho ngokusetyenziswa kwe zinambuzane ezizixhobo ze-biological control zokulawula ukhula lwe-cactus olukhoyo kweli lizwe. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
- Date Issued: 2022-04-08
Sequence, structure, dynamics, and substrate specificity analyses of bacterial Glycoside Hydrolase 1 enzymes from several activities
- Authors: Veldman, Wayde Michael
- Date: 2022-04-08
- Subjects: Glycosidases , Bioinformatics , Molecular dynamics , Ligands (Biochemistry) , Enzymes , Ligand binding (Biochemistry) , Sequence alignment (Bioinformatics) , Structural bioinformatics
- Language: English
- Type: Doctoral thesis , text
- Identifier: http://hdl.handle.net/10962/233805 , vital:50129 , DOI 10.21504/10962/233810
- Description: Glycoside hydrolase 1 (GH1) enzymes are a ubiquitous family of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. Despite their conserved catalytic domain, these enzymes have many different enzyme activities and/or substrate specificities as a change of only a few residues in the active site can alter their function. Most GH1 active site residues are situated in loop regions, and it is known that enzymes are more likely to develop new functions (broad specificity) if they possess an active site with a high proportion of loops. Furthermore, the GH1 active site consists of several subsites and cooperative binding makes the binding affinity of sites difficult to measure because the properties of one subsite are influenced by the binding of the other subsites. Extensive knowledge of protein-ligand interactions is critical to the comprehension of biology at the molecular level. However, the structural determinants and molecular details of GH1 ligand specificity and affinity are very broad, highly complex, not well understood, and therefore still need to be clarified. The aim of this study was to computationally characterise the activity of three newly solved GH1 crystallographic structures sent to us by our collaborators, and to provide evidence for their ligand-binding specificities. In addition, the differences in structural and biochemical contributions to enzyme specificity and/or function between different GH1 activities/enzymes was assessed, and the sequence/structure/function relationship of several activities of GH1 enzymes was analysed and compared. To accomplish the research aims, sequence analyses involving sequence identity, phylogenetics, and motif discovery were performed. As protein structure is more conserved than sequence, the discovered motifs were mapped to 3D structures for structural analysis and comparisons. To obtain information on enzyme mechanism or mode of action, as well as structure-function relationship, computational methods such as docking, molecular dynamics, binding free energy calculations, and essential dynamics were implemented. These computational approaches can provide information on the active site, binding residues, protein-ligand interactions, binding affinity, conformational change, and most structural or dynamic elements that play a role in enzyme function. The three new structures received from our collaborators are the first GH1 crystallographic structures from Bacillus licheniformis ever determined. As phospho-glycoside compounds were unavailable for purchase for use in activity assays, and as the active sites of the structures were absent of ligand, in silico docking and MD simulations were performed to provide evidence for their GH1 activities and substrate specificities. First though, the amino acid sequences of all known characterised bacterial GH1 enzymes were retrieved from the CAZy database and compared to the sequences of the three new B. licheniformis crystallographic structures which provided evidence of the putative 6Pβ-glucosidase activity of enzyme BlBglH, and dual 6Pβ-glucosidase/6Pβ-galactosidase (dual-phospho) activity of enzymes BlBglB and BlBglC. As all three enzymes were determined to be putative 6Pβ-glycosidase activity enzymes, much of the thesis focused on the overall analysis and comparison of the 6Pβ-glucosidase, 6Pβ-galactosidase, and dual-phospho activities that make up the 6Pβ-glycosidases. The 6Pβ-glycosidase active site residues were identified through consensus of binding interactions using all known 6Pβ-glycosidase PDB structures complexed complete ligand substrates. With regards to the 6Pβ-glucosidase activity, it was found that the L8b loop is longer and forms extra interactions with the L8a loop likely leading to increased L8 loop rigidity which would prevent the displacement of residue Ala423 ensuring a steric clash with galactoconfigured ligands and may engender substrate specificity for gluco-configured ligands only. Also, during molecular dynamics simulations using enzyme BlBglH (6Pβ-glucosidase activity), it was revealed that the favourable binding of substrate stabilises the loops that surround and make up the enzyme active site. Using the BlBglC (dual-phospho activity) enzyme structure with either galacto- (PNP6Pgal) or gluco-configured (PNP6Pglc) ligands, MD simulations in triplicate revealed important details of the broad specificity of dual-phospho activity enzymes. The ligand O4 hydroxyl position is the only difference between PNP6Pgal and PNP6Pgal, and it was found that residues Gln23 and Trp433 bind strongly to the ligand O3 hydroxyl group in the PNP6Pgal-enzyme complex, but to the ligand O4 hydroxyl group in the PNP6Pglc-enzyme complex. Also, His124 formed many hydrogen bonds with the PNP6Pgal O3 hydroxyl group but had none with PNP6Pglc. Alternatively, residues Tyr173, Tyr301, Gln302 and Thr321 formed hydrogen bonds with PNP6Pglc but not PNP6Pgal. Lastly, using multiple 3D structures from various GH1 activities, a large network of conserved interactions between active site residues (and other important residues) was uncovered, which most likely stabilise the loop regions that contain these residues, helping to retain their positions needed for binding molecules. Alternatively, there exists several differing residue-residue interactions when comparing each of the activities which could contribute towards individual activity substrate specificity by causing slightly different overall structure and malleability of the active site. Altogether, the findings in this thesis shed light on the function, mechanisms, dynamics, and ligand-binding of GH1 enzymes – particularly of the 6Pβ-glycosidase activities. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2022
- Full Text:
- Date Issued: 2022-04-08
- Authors: Veldman, Wayde Michael
- Date: 2022-04-08
- Subjects: Glycosidases , Bioinformatics , Molecular dynamics , Ligands (Biochemistry) , Enzymes , Ligand binding (Biochemistry) , Sequence alignment (Bioinformatics) , Structural bioinformatics
- Language: English
- Type: Doctoral thesis , text
- Identifier: http://hdl.handle.net/10962/233805 , vital:50129 , DOI 10.21504/10962/233810
- Description: Glycoside hydrolase 1 (GH1) enzymes are a ubiquitous family of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. Despite their conserved catalytic domain, these enzymes have many different enzyme activities and/or substrate specificities as a change of only a few residues in the active site can alter their function. Most GH1 active site residues are situated in loop regions, and it is known that enzymes are more likely to develop new functions (broad specificity) if they possess an active site with a high proportion of loops. Furthermore, the GH1 active site consists of several subsites and cooperative binding makes the binding affinity of sites difficult to measure because the properties of one subsite are influenced by the binding of the other subsites. Extensive knowledge of protein-ligand interactions is critical to the comprehension of biology at the molecular level. However, the structural determinants and molecular details of GH1 ligand specificity and affinity are very broad, highly complex, not well understood, and therefore still need to be clarified. The aim of this study was to computationally characterise the activity of three newly solved GH1 crystallographic structures sent to us by our collaborators, and to provide evidence for their ligand-binding specificities. In addition, the differences in structural and biochemical contributions to enzyme specificity and/or function between different GH1 activities/enzymes was assessed, and the sequence/structure/function relationship of several activities of GH1 enzymes was analysed and compared. To accomplish the research aims, sequence analyses involving sequence identity, phylogenetics, and motif discovery were performed. As protein structure is more conserved than sequence, the discovered motifs were mapped to 3D structures for structural analysis and comparisons. To obtain information on enzyme mechanism or mode of action, as well as structure-function relationship, computational methods such as docking, molecular dynamics, binding free energy calculations, and essential dynamics were implemented. These computational approaches can provide information on the active site, binding residues, protein-ligand interactions, binding affinity, conformational change, and most structural or dynamic elements that play a role in enzyme function. The three new structures received from our collaborators are the first GH1 crystallographic structures from Bacillus licheniformis ever determined. As phospho-glycoside compounds were unavailable for purchase for use in activity assays, and as the active sites of the structures were absent of ligand, in silico docking and MD simulations were performed to provide evidence for their GH1 activities and substrate specificities. First though, the amino acid sequences of all known characterised bacterial GH1 enzymes were retrieved from the CAZy database and compared to the sequences of the three new B. licheniformis crystallographic structures which provided evidence of the putative 6Pβ-glucosidase activity of enzyme BlBglH, and dual 6Pβ-glucosidase/6Pβ-galactosidase (dual-phospho) activity of enzymes BlBglB and BlBglC. As all three enzymes were determined to be putative 6Pβ-glycosidase activity enzymes, much of the thesis focused on the overall analysis and comparison of the 6Pβ-glucosidase, 6Pβ-galactosidase, and dual-phospho activities that make up the 6Pβ-glycosidases. The 6Pβ-glycosidase active site residues were identified through consensus of binding interactions using all known 6Pβ-glycosidase PDB structures complexed complete ligand substrates. With regards to the 6Pβ-glucosidase activity, it was found that the L8b loop is longer and forms extra interactions with the L8a loop likely leading to increased L8 loop rigidity which would prevent the displacement of residue Ala423 ensuring a steric clash with galactoconfigured ligands and may engender substrate specificity for gluco-configured ligands only. Also, during molecular dynamics simulations using enzyme BlBglH (6Pβ-glucosidase activity), it was revealed that the favourable binding of substrate stabilises the loops that surround and make up the enzyme active site. Using the BlBglC (dual-phospho activity) enzyme structure with either galacto- (PNP6Pgal) or gluco-configured (PNP6Pglc) ligands, MD simulations in triplicate revealed important details of the broad specificity of dual-phospho activity enzymes. The ligand O4 hydroxyl position is the only difference between PNP6Pgal and PNP6Pgal, and it was found that residues Gln23 and Trp433 bind strongly to the ligand O3 hydroxyl group in the PNP6Pgal-enzyme complex, but to the ligand O4 hydroxyl group in the PNP6Pglc-enzyme complex. Also, His124 formed many hydrogen bonds with the PNP6Pgal O3 hydroxyl group but had none with PNP6Pglc. Alternatively, residues Tyr173, Tyr301, Gln302 and Thr321 formed hydrogen bonds with PNP6Pglc but not PNP6Pgal. Lastly, using multiple 3D structures from various GH1 activities, a large network of conserved interactions between active site residues (and other important residues) was uncovered, which most likely stabilise the loop regions that contain these residues, helping to retain their positions needed for binding molecules. Alternatively, there exists several differing residue-residue interactions when comparing each of the activities which could contribute towards individual activity substrate specificity by causing slightly different overall structure and malleability of the active site. Altogether, the findings in this thesis shed light on the function, mechanisms, dynamics, and ligand-binding of GH1 enzymes – particularly of the 6Pβ-glycosidase activities. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2022
- Full Text:
- Date Issued: 2022-04-08
Diski 9 Nine and Other Stories (and Things)
- Authors: Mahlabe, Stoffel Seshia
- Date: 2022-04-07
- Subjects: Creative writing (Higher education) South Africa , Diaries -- Authorship , South African essays (English) 21st century , Short stories, South African (English) 21st century , Portuguese fiction History and criticism , African literature (English) History and criticism , Ghanaian fiction (English) History and criticism , South African fiction (English) History and criticism
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232283 , vital:49978
- Description: My thesis is a collection of short stories that reflects the everyday lives of ordinary people. They touch on issues of morality within the current context, in such a way as to both entertain and educate. As a child I learned to imitate the wildly comical, sometimes dark dinoonwane and dithamalakwane stories I heard from elders. In my thesis, I draw on Amos Tutuola’s exuberant style of retelling Yoruba folktales and balance this with the languid candour of Jose Saramago’s Blindness. Stories such as Bessora’s The Milka Cow, and Micah Dean Hicks’s Crawfish Noon have impressed me deeply for their incredible, wild narrative strategies that still, however, emulate realism. Dambudzo Marechera and Can Themba are also present influences. Both have sprinklings of erudition in their writing, but in an earthy kind of way. Their writing contains transliterations that have a ring of the vernacular languages, an idiom that Africanises the English language. , Thesis (MA) -- Faculty of Humanities, School of Languages, 2022
- Full Text:
- Date Issued: 2022-04-07
- Authors: Mahlabe, Stoffel Seshia
- Date: 2022-04-07
- Subjects: Creative writing (Higher education) South Africa , Diaries -- Authorship , South African essays (English) 21st century , Short stories, South African (English) 21st century , Portuguese fiction History and criticism , African literature (English) History and criticism , Ghanaian fiction (English) History and criticism , South African fiction (English) History and criticism
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232283 , vital:49978
- Description: My thesis is a collection of short stories that reflects the everyday lives of ordinary people. They touch on issues of morality within the current context, in such a way as to both entertain and educate. As a child I learned to imitate the wildly comical, sometimes dark dinoonwane and dithamalakwane stories I heard from elders. In my thesis, I draw on Amos Tutuola’s exuberant style of retelling Yoruba folktales and balance this with the languid candour of Jose Saramago’s Blindness. Stories such as Bessora’s The Milka Cow, and Micah Dean Hicks’s Crawfish Noon have impressed me deeply for their incredible, wild narrative strategies that still, however, emulate realism. Dambudzo Marechera and Can Themba are also present influences. Both have sprinklings of erudition in their writing, but in an earthy kind of way. Their writing contains transliterations that have a ring of the vernacular languages, an idiom that Africanises the English language. , Thesis (MA) -- Faculty of Humanities, School of Languages, 2022
- Full Text:
- Date Issued: 2022-04-07
Joice Mujuru and the Zanu-PF Women’s League 1973-2014: opportunities and limits of maternal dignity (musha mukadzi) and self-preservation
- Authors: Mataruse, Sisasenkosi
- Date: 2022-04-07
- Subjects: Mujuru, Amai Joice T R (Amai Joice Teurai Ropa) , ZANU Women's League , Women and democracy Zimbabwe , Women Political activity Zimbabwe , Political leadership Zimbabwe , Sexism in political culture Zimbabwe , Patriarchy Zimbabwe , Women Zimbabwe Social conditions , Maternal dignity (musha mukadzi)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/292748 , vital:57012
- Description: The foundations of African feminisms are intertwined with the historical liberation of the African continent. Joice Mujuru’s five decades in Zimbabwean political parties are no different in showing the gendered nature of the fight against the intersectional oppressions of nation, race, class and gender. The research aimed to examine the political life of Joice Mujuru between 1973 and 2018 in various political roles and what this might mean for how women political leaders participate and make decisions as autonomous individuals within political parties in Zimbabwe. This study is a political biography of Joice Mujuru’s ideas and leadership in political parties in Zimbabwe since 1973, when she joined the Zimbabwe African National Union – Patriotic Front (ZANU-PF) as a guerilla of its military wing, the Zimbabwe African National Liberation Army (ZANLA). Mujuru was the only woman in the first ZANU-PF cabinet in 1980. She served the Zimbabwean government in different cabinet positions and became the first female vice-president in 2004, until her ousting in 2014. This study is based on an interview with Mujuru, and nine interviews with one Member of Parliament, two independent political party candidates, three academics, two CSO activists, the leader of LEAD political party in Zimbabwe and personal communication with a celebrated Zimbabwean writer. The study uses the concept of “patriarchal bargain” (Kandiyoti, 1988; Makhunga, 2016) and “femocracy” (Mama, 1995b) to show that Mujuru’s participation in political parties has been shaped by compromising and negotiating a complex web of patriarchal constraints for acceptance and respect. This study shows that wifehood and motherhood, the idea of musha mukadzi (‘woman as home’), stands out as a defining factor for Mujuru in her identity formation as a political party leader and how she views the roles of other women in Zimbabwean political parties and politics. I term this political identity maternal dignity, which is a collective set of ideas of maternal respect determining women’s participation in political parties. The study shows that Mujuru uses dominant ideas of maternal dignity as a tool of self-presentation and self-preservation to survive as a political leader. Mujuru’s expulsion from ZANU-PF and her subsequent leadership in other political parties demonstrates the ways in which maternal dignity limits women from shaping alternative ideas of leadership outside of respectable womanhood. Through a political biography of Mujuru, the study reaches the conclusion that post-independence Zimbabwe offers limited space for women’s leadership, whether those women have liberation history credentials or not. The strategy of maternal dignity that Mujuru has used to navigate her political career is a “patriarchal bargain” with limited possibilities for women’s meaningful participation, and the transformation of political parties and governance in Zimbabwe. , Thesis (MA) -- Faculty of Humanities, Political and International Studies, 2022
- Full Text:
- Date Issued: 2022-04-07
- Authors: Mataruse, Sisasenkosi
- Date: 2022-04-07
- Subjects: Mujuru, Amai Joice T R (Amai Joice Teurai Ropa) , ZANU Women's League , Women and democracy Zimbabwe , Women Political activity Zimbabwe , Political leadership Zimbabwe , Sexism in political culture Zimbabwe , Patriarchy Zimbabwe , Women Zimbabwe Social conditions , Maternal dignity (musha mukadzi)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/292748 , vital:57012
- Description: The foundations of African feminisms are intertwined with the historical liberation of the African continent. Joice Mujuru’s five decades in Zimbabwean political parties are no different in showing the gendered nature of the fight against the intersectional oppressions of nation, race, class and gender. The research aimed to examine the political life of Joice Mujuru between 1973 and 2018 in various political roles and what this might mean for how women political leaders participate and make decisions as autonomous individuals within political parties in Zimbabwe. This study is a political biography of Joice Mujuru’s ideas and leadership in political parties in Zimbabwe since 1973, when she joined the Zimbabwe African National Union – Patriotic Front (ZANU-PF) as a guerilla of its military wing, the Zimbabwe African National Liberation Army (ZANLA). Mujuru was the only woman in the first ZANU-PF cabinet in 1980. She served the Zimbabwean government in different cabinet positions and became the first female vice-president in 2004, until her ousting in 2014. This study is based on an interview with Mujuru, and nine interviews with one Member of Parliament, two independent political party candidates, three academics, two CSO activists, the leader of LEAD political party in Zimbabwe and personal communication with a celebrated Zimbabwean writer. The study uses the concept of “patriarchal bargain” (Kandiyoti, 1988; Makhunga, 2016) and “femocracy” (Mama, 1995b) to show that Mujuru’s participation in political parties has been shaped by compromising and negotiating a complex web of patriarchal constraints for acceptance and respect. This study shows that wifehood and motherhood, the idea of musha mukadzi (‘woman as home’), stands out as a defining factor for Mujuru in her identity formation as a political party leader and how she views the roles of other women in Zimbabwean political parties and politics. I term this political identity maternal dignity, which is a collective set of ideas of maternal respect determining women’s participation in political parties. The study shows that Mujuru uses dominant ideas of maternal dignity as a tool of self-presentation and self-preservation to survive as a political leader. Mujuru’s expulsion from ZANU-PF and her subsequent leadership in other political parties demonstrates the ways in which maternal dignity limits women from shaping alternative ideas of leadership outside of respectable womanhood. Through a political biography of Mujuru, the study reaches the conclusion that post-independence Zimbabwe offers limited space for women’s leadership, whether those women have liberation history credentials or not. The strategy of maternal dignity that Mujuru has used to navigate her political career is a “patriarchal bargain” with limited possibilities for women’s meaningful participation, and the transformation of political parties and governance in Zimbabwe. , Thesis (MA) -- Faculty of Humanities, Political and International Studies, 2022
- Full Text:
- Date Issued: 2022-04-07
The self and the impossible pursuit of justice in J.M. Coetzee’s "Waiting for the barbarians, disgrace and foe”
- Authors: Swanepoel, Elbie
- Date: 2022-04-07
- Subjects: Coetzee, J M, 1940- Criticism and interpretation , Coetzee, J M, 1940- Waiting for the barbarians , Coetzee, J M, 1940- Disgrace , Coetzee, J M, 1940- Foe , Ethics in literature , Deconstruction , Postmodernism (Literature) , Justice in literature
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232294 , vital:49979
- Description: In its engagement with J.M. Coetzee’s Waiting for the Barbarians, Disgrace and Foe, this thesis explores how the philosophies of Emmanuel Levinas and Jacques Derrida can be used as a framework for understanding the self’s relationship with the other. In contrast to postcolonial readings of these texts, this thesis does not consider the separation between the self and the other in terms of social or cultural differences but rather the radical alterity of the other that is perceived in the face-to-face encounter. This study aims to illustrate how the engagement with alterity exposes the instability of the self’s structures of knowledge that, in these instances, are grounded in the Western metaphysical tradition. The effects of the self’s encounter with the other are seen in the personal transformation of Coetzee’s protagonists whose initial flaws and problematic worldviews are revealed in the context of the injustices done to the other. Furthermore, the study examines the extent to which the self is complicit in the suffering of the other and how this ultimately complicates their pursuit of justice for them. While the focus of this thesis is primarily on the characters, it also shows how the writer’s careful treatment of otherness functions to confront and engage the reader with the alterity of the other and the ethical dilemmas inherent in attempting to conceptualise it. The study concludes that the protagonists’ engagement with others and their subsequent confrontation with themselves lead them to consider what an ethical response to the other might be. This ethical turn results in positive change, however ambiguously, in their thoughts about and behaviours toward other beings. , Thesis (MA) -- Faculty of Humanities, English Language and Linguistics, 2022
- Full Text:
- Date Issued: 2022-04-07
- Authors: Swanepoel, Elbie
- Date: 2022-04-07
- Subjects: Coetzee, J M, 1940- Criticism and interpretation , Coetzee, J M, 1940- Waiting for the barbarians , Coetzee, J M, 1940- Disgrace , Coetzee, J M, 1940- Foe , Ethics in literature , Deconstruction , Postmodernism (Literature) , Justice in literature
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232294 , vital:49979
- Description: In its engagement with J.M. Coetzee’s Waiting for the Barbarians, Disgrace and Foe, this thesis explores how the philosophies of Emmanuel Levinas and Jacques Derrida can be used as a framework for understanding the self’s relationship with the other. In contrast to postcolonial readings of these texts, this thesis does not consider the separation between the self and the other in terms of social or cultural differences but rather the radical alterity of the other that is perceived in the face-to-face encounter. This study aims to illustrate how the engagement with alterity exposes the instability of the self’s structures of knowledge that, in these instances, are grounded in the Western metaphysical tradition. The effects of the self’s encounter with the other are seen in the personal transformation of Coetzee’s protagonists whose initial flaws and problematic worldviews are revealed in the context of the injustices done to the other. Furthermore, the study examines the extent to which the self is complicit in the suffering of the other and how this ultimately complicates their pursuit of justice for them. While the focus of this thesis is primarily on the characters, it also shows how the writer’s careful treatment of otherness functions to confront and engage the reader with the alterity of the other and the ethical dilemmas inherent in attempting to conceptualise it. The study concludes that the protagonists’ engagement with others and their subsequent confrontation with themselves lead them to consider what an ethical response to the other might be. This ethical turn results in positive change, however ambiguously, in their thoughts about and behaviours toward other beings. , Thesis (MA) -- Faculty of Humanities, English Language and Linguistics, 2022
- Full Text:
- Date Issued: 2022-04-07
A conceptual IT governance framework to guide the development of interoperable health information systems
- Authors: Matshaba, Lebogang
- Date: 2022-04-06
- Subjects: Information technology Management , Information technology Management Standards , Information technology Security measures , Medical informatics South Africa , Medical records Data processing , Internetworking (Telecommunication) , National health insurance South Africa , Design Science Research (DSR)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284570 , vital:56075
- Description: In light of changing health needs, health information systems are presented with a plethora of challenges. For instance, the rise of COVID-19 in the past year has led to the discourse on the strength of current health systems to support health needs and the readiness for the National Health Insurance in South Africa. In addition to operating in resource-constrained environments, the lack of synchrony between health information systems across health facilities led to the fragmentation of health information and diminished access to quality healthcare. This research, following the Design Science Research Methodology (DSRM) process, developed an IT governance conceptual framework (HISIG-CF), to inform the interoperability of health information systems. The HISIG-CF is developed from literature and qualitative data collected using an expert reviews method from practitioners in the healthcare sector who evaluated the constructs of the HISIG-CF. Thematic analysis and hermeneutics were used to analyse and interpret the data. The results revealed a need for more guidance to inform interoperability interventions and strengthen current health information systems. The contribution of this study is the HISIG-CF which is deemed relevant and potentially fit-for-purpose to improve health information systems interoperability within the healthcare sector in South Africa. , Thesis (MCom) -- Faculty of Commerce, Department of Information Systems, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Matshaba, Lebogang
- Date: 2022-04-06
- Subjects: Information technology Management , Information technology Management Standards , Information technology Security measures , Medical informatics South Africa , Medical records Data processing , Internetworking (Telecommunication) , National health insurance South Africa , Design Science Research (DSR)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284570 , vital:56075
- Description: In light of changing health needs, health information systems are presented with a plethora of challenges. For instance, the rise of COVID-19 in the past year has led to the discourse on the strength of current health systems to support health needs and the readiness for the National Health Insurance in South Africa. In addition to operating in resource-constrained environments, the lack of synchrony between health information systems across health facilities led to the fragmentation of health information and diminished access to quality healthcare. This research, following the Design Science Research Methodology (DSRM) process, developed an IT governance conceptual framework (HISIG-CF), to inform the interoperability of health information systems. The HISIG-CF is developed from literature and qualitative data collected using an expert reviews method from practitioners in the healthcare sector who evaluated the constructs of the HISIG-CF. Thematic analysis and hermeneutics were used to analyse and interpret the data. The results revealed a need for more guidance to inform interoperability interventions and strengthen current health information systems. The contribution of this study is the HISIG-CF which is deemed relevant and potentially fit-for-purpose to improve health information systems interoperability within the healthcare sector in South Africa. , Thesis (MCom) -- Faculty of Commerce, Department of Information Systems, 2022
- Full Text:
- Date Issued: 2022-04-06
Bioethical analysis of COVID19, WASH/waste and related disaster management implications
- Authors: Iheanetu, Chidinma Uchenna
- Date: 2022-04-06
- Subjects: Uncatalogued
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/232250 , vital:49975
- Description: Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Iheanetu, Chidinma Uchenna
- Date: 2022-04-06
- Subjects: Uncatalogued
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/232250 , vital:49975
- Description: Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2022
- Full Text:
- Date Issued: 2022-04-06
Bond market integration in the Common Monetary Area (CMA)
- Ramoriting, Retšelisitsoe Silvia
- Authors: Ramoriting, Retšelisitsoe Silvia
- Date: 2022-04-06
- Subjects: Globalization , Globalization Economic aspects , Bond market , Rand area , Africa, Southern Economic integration , Autoregressive distributed lag (ARDL) model
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284592 , vital:56077
- Description: The study reviews the phenomenon of financial integration. During the late 1980s and 1990s, financial market integration around the world increased due to globalisation of investments and the need for higher returns and international risk diversification. The increase was accompanied by a significant increase in private capital flows into developing countries from developed countries. The main goal of the study is to examine bond market integration in the common monetary area The study therefore investigates the co-movement of government bond returns within the CMA using data from Eswatini, Namibia, and South Africa. The study attempts to find the short-run and long-run relationship of these government bond returns using the ARDL cointegration technique. The study uses daily data of 10-year government bond yields spanning from August 2014 to September 2019. The empirical results reveal that there exists a short-run and long-run relationship between South Africa and Eswatini. Between South Africa and Namibia, there only exist a short-run relationship. Just like the previously mentioned studies, the short-run relationship is a result of policy convergence. The lack of long-run relationship between South and Namibia was due to poor institutional developments and limited investment opportunities. In this case, policy measures (or reforms) and a review of the union are necessary to increase integration of these bond markets. , Thesis (MCom) -- Faculty of Commerce, Economics and Economic History, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Ramoriting, Retšelisitsoe Silvia
- Date: 2022-04-06
- Subjects: Globalization , Globalization Economic aspects , Bond market , Rand area , Africa, Southern Economic integration , Autoregressive distributed lag (ARDL) model
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284592 , vital:56077
- Description: The study reviews the phenomenon of financial integration. During the late 1980s and 1990s, financial market integration around the world increased due to globalisation of investments and the need for higher returns and international risk diversification. The increase was accompanied by a significant increase in private capital flows into developing countries from developed countries. The main goal of the study is to examine bond market integration in the common monetary area The study therefore investigates the co-movement of government bond returns within the CMA using data from Eswatini, Namibia, and South Africa. The study attempts to find the short-run and long-run relationship of these government bond returns using the ARDL cointegration technique. The study uses daily data of 10-year government bond yields spanning from August 2014 to September 2019. The empirical results reveal that there exists a short-run and long-run relationship between South Africa and Eswatini. Between South Africa and Namibia, there only exist a short-run relationship. Just like the previously mentioned studies, the short-run relationship is a result of policy convergence. The lack of long-run relationship between South and Namibia was due to poor institutional developments and limited investment opportunities. In this case, policy measures (or reforms) and a review of the union are necessary to increase integration of these bond markets. , Thesis (MCom) -- Faculty of Commerce, Economics and Economic History, 2022
- Full Text:
- Date Issued: 2022-04-06
Exchange rate volatility and the returns on diversified South African investment portfolios
- Authors: Mulamu, Murendeni
- Date: 2022-04-06
- Subjects: Foreign exchange rates South Africa , Rate of return , Investments , GARCH model , Regression analysis , Autoregressive distributed lag (ARDL) model
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284581 , vital:56076
- Description: Globalisation has made it much easier to invest in foreign countries. This creates endless options accessible to investors, including exploiting opportunities for investment in international economies. Although foreign investment portfolio diversification provides significant opportunities for financial returns, exchange rate volatility may play a prominent role when investing in foreign markets. Since the introduction of a floating exchange rate system, together with the inflation-targeting monetary policy framework in South Africa, there has been significant volatility in the exchange rate, far more than during the previous dispensations. This, however, creates a strong need to consider how the unpredictable nature of the exchange rate affects these investments. The purpose of this study is to analyse the effect of exchange rate volatility on the returns on diversified South African investment portfolios. This research examined whether there is a homogenous relationship between South African (domestic) portfolios and the internationally diversified portfolios. In addition, the study investigated the long-run relationship between the exchange rate volatility and both domestic portfolios and the internationally diversified portfolios for the period 2007-2019. To achieve these goals, a panel ARDL model was employed. This study found that exchange rate volatility does not account for a significant portion of returns on investment portfolios fluctuations. Moreover, the relationship is not homogenous because returns on domestic investment portfolios react positively to the exchange rate volatility, whereas returns international investment portfolios respond negatively/positively to the exchange rate volatility depending on whether the relationship is short or long run. This study will contribute to the existing literature, and it is important for investors intending to diversify their investment portfolios both domestically and internationally using different mutual funds in South Africa. , Thesis (MCom) -- Faculty of Commerce, Economics and Economic History, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Mulamu, Murendeni
- Date: 2022-04-06
- Subjects: Foreign exchange rates South Africa , Rate of return , Investments , GARCH model , Regression analysis , Autoregressive distributed lag (ARDL) model
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284581 , vital:56076
- Description: Globalisation has made it much easier to invest in foreign countries. This creates endless options accessible to investors, including exploiting opportunities for investment in international economies. Although foreign investment portfolio diversification provides significant opportunities for financial returns, exchange rate volatility may play a prominent role when investing in foreign markets. Since the introduction of a floating exchange rate system, together with the inflation-targeting monetary policy framework in South Africa, there has been significant volatility in the exchange rate, far more than during the previous dispensations. This, however, creates a strong need to consider how the unpredictable nature of the exchange rate affects these investments. The purpose of this study is to analyse the effect of exchange rate volatility on the returns on diversified South African investment portfolios. This research examined whether there is a homogenous relationship between South African (domestic) portfolios and the internationally diversified portfolios. In addition, the study investigated the long-run relationship between the exchange rate volatility and both domestic portfolios and the internationally diversified portfolios for the period 2007-2019. To achieve these goals, a panel ARDL model was employed. This study found that exchange rate volatility does not account for a significant portion of returns on investment portfolios fluctuations. Moreover, the relationship is not homogenous because returns on domestic investment portfolios react positively to the exchange rate volatility, whereas returns international investment portfolios respond negatively/positively to the exchange rate volatility depending on whether the relationship is short or long run. This study will contribute to the existing literature, and it is important for investors intending to diversify their investment portfolios both domestically and internationally using different mutual funds in South Africa. , Thesis (MCom) -- Faculty of Commerce, Economics and Economic History, 2022
- Full Text:
- Date Issued: 2022-04-06
Financial technology and bank risk-taking behavior: a case of selected South African banks
- Authors: Magula, Zizipho
- Date: 2022-04-06
- Subjects: Uncatalogued
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/234206 , vital:50172
- Description: Thesis (MCom) -- Faculty of Commerce, Economics and Economic History, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Magula, Zizipho
- Date: 2022-04-06
- Subjects: Uncatalogued
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/234206 , vital:50172
- Description: Thesis (MCom) -- Faculty of Commerce, Economics and Economic History, 2022
- Full Text:
- Date Issued: 2022-04-06
Pharmacists’ attitudes and perception of using pictograms as a communication tool in practice
- Authors: Okeyo, Sam Juma
- Date: 2022-04-06
- Subjects: Picture-writing South Africa , Communication in public health South Africa , Pharmacists South Africa Attitudes , Health literacy South Africa , Patient education South Africa , Structural equation modeling , Theory of planned behavior
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290693 , vital:56775
- Description: Pictograms, when used in conjunction with verbal and written information, are known to be effective in improving comprehension and recall of medicines information and in supporting communication between healthcare professionals and patients. However, pictograms are seldom used in routine pharmacy practice, and little is known about pharmacists’ opinions of pictograms and their intention to possibly incorporate pictograms into routine practice. This study aimed to investigate pharmacists’ opinions relating to pictograms as a communication tool, and, by applying the Theory of Planned Behaviour (TPB), to explore their intention to use pictograms in pharmacy practice as well as the barriers to their use. The quantitative study design involved a two-phase approach. Phase 1 was a descriptive, cross-sectional online national survey of pharmacists. The 70-item, four-section survey was primarily based on the constructs of TPB, which included attitude, intention, subjective norm, and perceived behavioural control. The last survey section recruited pharmacists for a follow-up Phase 2 survey. Following a pilot study, the survey was emailed to all pharmacists registered with the South African Pharmacy Council. Descriptive statistics for survey items were generated. Pearson correlation investigated the correlation between participant characteristics, familiarity with pictograms and use of pictograms in practice. Structural Equation Modelling (SEM) determined if there was a significant relationship between attitude, subjective norm and perceived behavioural control with intention to use pictograms. A total of 426 pharmacists responded to the Phase 1 survey. Most pharmacists were familiar with the term ‘pictogram’; however, over three-quarters of pharmacists had never observed pictograms being routinely used in a pharmacy setting. When presented with pictograms designed for a low health literate population, most pharmacists thought the design and overall look of the pictograms would be easy for most patients in South Africa to understand (71.6 ± 24.0). Two-thirds of pharmacists (65.0 ± 30.6), felt that pictograms should be used for all patient populations. More than 85% of pharmacists agreed that pictograms should be used for dosage instructions, auxiliary or additional information, warnings, and storage instructions. However, fewer (58-68%) felt that indication, side effects and risk communication information should be accompanied by pictograms. Pharmacists demonstrated positive attitudes towards using pictograms in practice (mean = 4.2 ± 0.9; range: 1 - 5), while perceived behavioural control (mean = 3.0 ± 1.2; range: 1 - 5), subjective norm (mean = 3.8 ± 1.0; range 1 - 5) and intention (mean = 3.3 ± 1.0; range 1 - 5) were all neutral. Attitude (β = -0.25, p < 0.117), however, was not a significant predictor of intention while perceived behavioural control (β = -0.83, p < 0.000) presented with a significant negative correlation with intention. Subjective norm (β = 0.57, p <0.000) was the strongest predictor of intention. Scale reliability ranged from 0.770 to 0.865 for the TPB constructs. Phase 2 aimed to expand on, and further investigate Phase 1 findings relating to current and intended pharmacist behaviour and opinions concerning pictogram usage. As Phase 2 looked to investigate issues in greater depth, questions included open-ended response options. The survey link was emailed to all pharmacists who had voluntarily offered to participate in Phase 2. Frequency data for all questions were generated, and content analysis was undertaken for the free-response comments offered by pharmacists. A total of 35 pharmacists responded to the Phase 2 survey. Most pharmacists who routinely used pictograms initiated their use with support from pharmacists’ colleagues (8/12) and their supervisor/manager (6/7). Pharmacists who stated their intention to use pictograms anticipated receiving support from their pharmacists' colleagues (18/23) and manager/supervisor (15/23). All 12 pharmacists who were routinely using pictograms reported a positive effect on patient communication, with almost all having encountered no negative aspects of using pictograms (11/12). Almost all pharmacists intending to use pictograms could foresee benefits from their use (22/23). Misinterpretation of pictograms was a prevalent barrier common to both pharmacists routinely using pictograms and to those intending to use pictograms. Increased workload was regarded as a prevalent barrier only by pharmacists intending to use pictograms. This study was the first national study of pharmacists to investigate their opinion of pictograms and their use and to adopt a theoretical approach to consider pharmacist intention to use pictograms in routine pharmacy practice. Pharmacists generally expressed positive attitudes to pictograms but showed inadequate understanding of pictogram use. Pharmacists using pictograms reported the positive effect of pictograms on their patient communication, whereas those planning to use pictograms could foresee the benefits of using pictograms despite regarding increased workload as a barrier. As the strongest predictor of intention was subjective norm, this construct should therefore be targeted to motivate pharmacists to adopt the use of pictograms. , Thesis (MPharm) -- Faculty of Pharmacy, Pharmacy, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Okeyo, Sam Juma
- Date: 2022-04-06
- Subjects: Picture-writing South Africa , Communication in public health South Africa , Pharmacists South Africa Attitudes , Health literacy South Africa , Patient education South Africa , Structural equation modeling , Theory of planned behavior
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290693 , vital:56775
- Description: Pictograms, when used in conjunction with verbal and written information, are known to be effective in improving comprehension and recall of medicines information and in supporting communication between healthcare professionals and patients. However, pictograms are seldom used in routine pharmacy practice, and little is known about pharmacists’ opinions of pictograms and their intention to possibly incorporate pictograms into routine practice. This study aimed to investigate pharmacists’ opinions relating to pictograms as a communication tool, and, by applying the Theory of Planned Behaviour (TPB), to explore their intention to use pictograms in pharmacy practice as well as the barriers to their use. The quantitative study design involved a two-phase approach. Phase 1 was a descriptive, cross-sectional online national survey of pharmacists. The 70-item, four-section survey was primarily based on the constructs of TPB, which included attitude, intention, subjective norm, and perceived behavioural control. The last survey section recruited pharmacists for a follow-up Phase 2 survey. Following a pilot study, the survey was emailed to all pharmacists registered with the South African Pharmacy Council. Descriptive statistics for survey items were generated. Pearson correlation investigated the correlation between participant characteristics, familiarity with pictograms and use of pictograms in practice. Structural Equation Modelling (SEM) determined if there was a significant relationship between attitude, subjective norm and perceived behavioural control with intention to use pictograms. A total of 426 pharmacists responded to the Phase 1 survey. Most pharmacists were familiar with the term ‘pictogram’; however, over three-quarters of pharmacists had never observed pictograms being routinely used in a pharmacy setting. When presented with pictograms designed for a low health literate population, most pharmacists thought the design and overall look of the pictograms would be easy for most patients in South Africa to understand (71.6 ± 24.0). Two-thirds of pharmacists (65.0 ± 30.6), felt that pictograms should be used for all patient populations. More than 85% of pharmacists agreed that pictograms should be used for dosage instructions, auxiliary or additional information, warnings, and storage instructions. However, fewer (58-68%) felt that indication, side effects and risk communication information should be accompanied by pictograms. Pharmacists demonstrated positive attitudes towards using pictograms in practice (mean = 4.2 ± 0.9; range: 1 - 5), while perceived behavioural control (mean = 3.0 ± 1.2; range: 1 - 5), subjective norm (mean = 3.8 ± 1.0; range 1 - 5) and intention (mean = 3.3 ± 1.0; range 1 - 5) were all neutral. Attitude (β = -0.25, p < 0.117), however, was not a significant predictor of intention while perceived behavioural control (β = -0.83, p < 0.000) presented with a significant negative correlation with intention. Subjective norm (β = 0.57, p <0.000) was the strongest predictor of intention. Scale reliability ranged from 0.770 to 0.865 for the TPB constructs. Phase 2 aimed to expand on, and further investigate Phase 1 findings relating to current and intended pharmacist behaviour and opinions concerning pictogram usage. As Phase 2 looked to investigate issues in greater depth, questions included open-ended response options. The survey link was emailed to all pharmacists who had voluntarily offered to participate in Phase 2. Frequency data for all questions were generated, and content analysis was undertaken for the free-response comments offered by pharmacists. A total of 35 pharmacists responded to the Phase 2 survey. Most pharmacists who routinely used pictograms initiated their use with support from pharmacists’ colleagues (8/12) and their supervisor/manager (6/7). Pharmacists who stated their intention to use pictograms anticipated receiving support from their pharmacists' colleagues (18/23) and manager/supervisor (15/23). All 12 pharmacists who were routinely using pictograms reported a positive effect on patient communication, with almost all having encountered no negative aspects of using pictograms (11/12). Almost all pharmacists intending to use pictograms could foresee benefits from their use (22/23). Misinterpretation of pictograms was a prevalent barrier common to both pharmacists routinely using pictograms and to those intending to use pictograms. Increased workload was regarded as a prevalent barrier only by pharmacists intending to use pictograms. This study was the first national study of pharmacists to investigate their opinion of pictograms and their use and to adopt a theoretical approach to consider pharmacist intention to use pictograms in routine pharmacy practice. Pharmacists generally expressed positive attitudes to pictograms but showed inadequate understanding of pictogram use. Pharmacists using pictograms reported the positive effect of pictograms on their patient communication, whereas those planning to use pictograms could foresee the benefits of using pictograms despite regarding increased workload as a barrier. As the strongest predictor of intention was subjective norm, this construct should therefore be targeted to motivate pharmacists to adopt the use of pictograms. , Thesis (MPharm) -- Faculty of Pharmacy, Pharmacy, 2022
- Full Text:
- Date Issued: 2022-04-06
Protecting the right to identity against catfishing
- Authors: Ndyulo, Lisa Neliswa Latima
- Date: 2022-04-06
- Subjects: Catfishing South Africa , False personation Law and legislation South Africa , Torts South Africa , Mass media and publicity South Africa , Social media Law and legislation South Africa , Identity theft Law and legislation South Africa
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290767 , vital:56782
- Description: Catfishing is a form of impersonation occurring on social media that interferes with a person’s right to identity. It involves creating a fake profile online using another person’s images. The facets of the right to identity are image, name, and likeness, among others. Catfishing affects a person’s right to identity and human dignity. Hence, the thesis aims to determine whether the right to identity adequately protects individuals against catfishing. This thesis is a desktop analysis considering the South African legal framework related to the right to identity, including the common law, the Constitution of the Republic of South Africa, 1996, and legislation. The thesis is also a comparative analysis assessing the adequacy of addressing catfishing through the right to identity. The study evaluates the right to identity’s adequacy by juxtaposing the South African legal framework with California and Oklahoma’s common law and statutory interventions. The study reveals that the right to identity protects South African social networking website users against catfishing. Like the common law right of privacy in California and Oklahoma, a person infringes the right to identity when they use another person’s identity facets to portray them in a false light, and like the statutory right of publicity in California and Oklahoma, a person infringes identity when they appropriate facets of another person’s identity for commercial gain. The infringement of the right to identity entitles a person to legal remedies, including a claim for damages, among other things. The thesis also considers principles of conflict of laws to determine the operative law in an instance where a victim resides in South Africa and the perpetrator resides in the US, or vice versa. The study recommends that developing the common law to recognise that identity can be infringed by mere appropriation not linked to a commercial purpose would be beneficial for addressing catfishing adequately in South Africa. Legal development contributes to the constitutional imperative to align the common law with society’s shifting needs and address novel legal issues, such as catfishing. , Thesis (LLM) -- Faculty of Law, Law, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Ndyulo, Lisa Neliswa Latima
- Date: 2022-04-06
- Subjects: Catfishing South Africa , False personation Law and legislation South Africa , Torts South Africa , Mass media and publicity South Africa , Social media Law and legislation South Africa , Identity theft Law and legislation South Africa
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290767 , vital:56782
- Description: Catfishing is a form of impersonation occurring on social media that interferes with a person’s right to identity. It involves creating a fake profile online using another person’s images. The facets of the right to identity are image, name, and likeness, among others. Catfishing affects a person’s right to identity and human dignity. Hence, the thesis aims to determine whether the right to identity adequately protects individuals against catfishing. This thesis is a desktop analysis considering the South African legal framework related to the right to identity, including the common law, the Constitution of the Republic of South Africa, 1996, and legislation. The thesis is also a comparative analysis assessing the adequacy of addressing catfishing through the right to identity. The study evaluates the right to identity’s adequacy by juxtaposing the South African legal framework with California and Oklahoma’s common law and statutory interventions. The study reveals that the right to identity protects South African social networking website users against catfishing. Like the common law right of privacy in California and Oklahoma, a person infringes the right to identity when they use another person’s identity facets to portray them in a false light, and like the statutory right of publicity in California and Oklahoma, a person infringes identity when they appropriate facets of another person’s identity for commercial gain. The infringement of the right to identity entitles a person to legal remedies, including a claim for damages, among other things. The thesis also considers principles of conflict of laws to determine the operative law in an instance where a victim resides in South Africa and the perpetrator resides in the US, or vice versa. The study recommends that developing the common law to recognise that identity can be infringed by mere appropriation not linked to a commercial purpose would be beneficial for addressing catfishing adequately in South Africa. Legal development contributes to the constitutional imperative to align the common law with society’s shifting needs and address novel legal issues, such as catfishing. , Thesis (LLM) -- Faculty of Law, Law, 2022
- Full Text:
- Date Issued: 2022-04-06
Soil and vegetation recovery following Acacia dealbata clearing in the Tsitsa catchment, Eastern Cape Province of South Africa: implications for ecological restoration
- Authors: Balintulo, Putuma
- Date: 2022-04-06
- Subjects: Acacia South Africa Eastern Cape , Invasive plants South Africa Eastern Cape , Working for Water Programme , Soil restoration South Africa Eastern Cape , Plant nutrients South Africa Eastern Cape , Restoration ecology South Africa Eastern Cape , Clearing of land South Africa Eastern Cape , Legacy effect
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290778 , vital:56783
- Description: Invasion by alien plant species in South Africa continues to compromise the stability of ecosystems by causing declines in biodiversity, altering soil nutrients and processes, and subsequently transforming ecosystem functionality. Control of invasive alien plant species has been widely implemented in South Africa to minimize their negative impacts; however, the legacy effects can persist long after the plant has been removed. The impacts of Acacia dealbata clearing on soil properties and native vegetation recovery remains understudied despite their significance in ecological restoration and monitoring. This comparative study determined the impacts of A. dealbata clearing on both soil physicochemical properties and vegetation in the Eastern Cape Province of South Africa. Soils were collected from three different clearing treatments, namely, cleared, invaded, and uninvaded, on 5 m x 5 m plots over three summer months. The plots were replicated four times for each clearing treatment, making a total of 72 sampling plots. Soils were assessed for soil pH, resistivity, P, C, N, and exchangeable cations as well as soil moisture content, penetration resistance, infiltration rate, hydraulic conductivity, and water repellency. Clearing of A. dealbata did not have any significant effects on most soil nutrients, however, there were variations in soil pH, resistance, and Na. Soil pH was significantly higher in the uninvaded treatments than in the cleared and invaded treatments. Soil moisture content was significantly higher in the cleared treatments than the adjacent invaded and uninvaded treatments, but this was observed in the month of December only. Soil penetration resistance and infiltration rates were significantly higher in the month of December in the cleared treatments. For all clearing treatments, no significant differences were recorded for soil hydraulic conductivity. These results on changes in soil properties following A. dealbata clearing are varied, with some soil properties showing decreases, an indication that removal of A. dealbata has the potential to shift soil properties towards a positive recovery trajectory. This study further assessed whether the clearing of A. dealbata facilitates the recovery of native plant species. Vegetation surveys were conducted in the three above-mentioned treatments and plots. Results showed little recruitment of native grasses and forbs, but the persistence of A. dealbata seedlings in the cleared treatments. Species richness and Shannon-Wiener diversity index were significantly (P < 0.05) higher in the cleared and invaded treatments than the uninvaded treatments, and this was more visible for trees and shrubs. Cover for all species was significantly higher (P < 0.05) in the uninvaded than the cleared and invaded treatments. This study observed the recruitment of some native species in the cleared treatments that were not present in the invaded treatments. Therefore, the recruitment and establishment of some native species, mostly grasses, in the cleared treatments gives assurance that passive restoration is on a positive vegetation recovery trajectory that can lead to recovery of native vegetation after A. dealbata clearing. Therefore, the study concludes that investing in ecological restoration after alien plant clearing is a necessity for complete ecosystem recovery to be achieved. Overall, the study concludes that the removal of A. dealbata triggers changes to some soil properties. Similarly, the study observed recruitment of some native grasses in cleared areas, an indication that alien plant clearing facilitates changes in both soil properties and vegetation. However, soil and vegetation recovery are being hampered by the regrowth of A. dealbata and secondary invaders that were observed in the cleared treatments. Two key recommendations of this study are (i) clearing follow-up to remove recruiting seedlings of invasive plant species and secondary invaders should be timeous and well-funded, and (ii) active restoration should be considered to speed-up soil and vegetation recovery processes. , Thesis (MSc) -- Faculty of Science, Environmental Science, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Balintulo, Putuma
- Date: 2022-04-06
- Subjects: Acacia South Africa Eastern Cape , Invasive plants South Africa Eastern Cape , Working for Water Programme , Soil restoration South Africa Eastern Cape , Plant nutrients South Africa Eastern Cape , Restoration ecology South Africa Eastern Cape , Clearing of land South Africa Eastern Cape , Legacy effect
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290778 , vital:56783
- Description: Invasion by alien plant species in South Africa continues to compromise the stability of ecosystems by causing declines in biodiversity, altering soil nutrients and processes, and subsequently transforming ecosystem functionality. Control of invasive alien plant species has been widely implemented in South Africa to minimize their negative impacts; however, the legacy effects can persist long after the plant has been removed. The impacts of Acacia dealbata clearing on soil properties and native vegetation recovery remains understudied despite their significance in ecological restoration and monitoring. This comparative study determined the impacts of A. dealbata clearing on both soil physicochemical properties and vegetation in the Eastern Cape Province of South Africa. Soils were collected from three different clearing treatments, namely, cleared, invaded, and uninvaded, on 5 m x 5 m plots over three summer months. The plots were replicated four times for each clearing treatment, making a total of 72 sampling plots. Soils were assessed for soil pH, resistivity, P, C, N, and exchangeable cations as well as soil moisture content, penetration resistance, infiltration rate, hydraulic conductivity, and water repellency. Clearing of A. dealbata did not have any significant effects on most soil nutrients, however, there were variations in soil pH, resistance, and Na. Soil pH was significantly higher in the uninvaded treatments than in the cleared and invaded treatments. Soil moisture content was significantly higher in the cleared treatments than the adjacent invaded and uninvaded treatments, but this was observed in the month of December only. Soil penetration resistance and infiltration rates were significantly higher in the month of December in the cleared treatments. For all clearing treatments, no significant differences were recorded for soil hydraulic conductivity. These results on changes in soil properties following A. dealbata clearing are varied, with some soil properties showing decreases, an indication that removal of A. dealbata has the potential to shift soil properties towards a positive recovery trajectory. This study further assessed whether the clearing of A. dealbata facilitates the recovery of native plant species. Vegetation surveys were conducted in the three above-mentioned treatments and plots. Results showed little recruitment of native grasses and forbs, but the persistence of A. dealbata seedlings in the cleared treatments. Species richness and Shannon-Wiener diversity index were significantly (P < 0.05) higher in the cleared and invaded treatments than the uninvaded treatments, and this was more visible for trees and shrubs. Cover for all species was significantly higher (P < 0.05) in the uninvaded than the cleared and invaded treatments. This study observed the recruitment of some native species in the cleared treatments that were not present in the invaded treatments. Therefore, the recruitment and establishment of some native species, mostly grasses, in the cleared treatments gives assurance that passive restoration is on a positive vegetation recovery trajectory that can lead to recovery of native vegetation after A. dealbata clearing. Therefore, the study concludes that investing in ecological restoration after alien plant clearing is a necessity for complete ecosystem recovery to be achieved. Overall, the study concludes that the removal of A. dealbata triggers changes to some soil properties. Similarly, the study observed recruitment of some native grasses in cleared areas, an indication that alien plant clearing facilitates changes in both soil properties and vegetation. However, soil and vegetation recovery are being hampered by the regrowth of A. dealbata and secondary invaders that were observed in the cleared treatments. Two key recommendations of this study are (i) clearing follow-up to remove recruiting seedlings of invasive plant species and secondary invaders should be timeous and well-funded, and (ii) active restoration should be considered to speed-up soil and vegetation recovery processes. , Thesis (MSc) -- Faculty of Science, Environmental Science, 2022
- Full Text:
- Date Issued: 2022-04-06
Statistical and Mathematical Learning: an application to fraud detection and prevention
- Authors: Hamlomo, Sisipho
- Date: 2022-04-06
- Subjects: Credit card fraud , Bootstrap (Statistics) , Support vector machines , Neural networks (Computer science) , Decision trees , Machine learning , Cross-validation , Imbalanced data
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/233795 , vital:50128
- Description: Credit card fraud is an ever-growing problem. There has been a rapid increase in the rate of fraudulent activities in recent years resulting in a considerable loss to several organizations, companies, and government agencies. Many researchers have focused on detecting fraudulent behaviours early using advanced machine learning techniques. However, credit card fraud detection is not a straightforward task since fraudulent behaviours usually differ for each attempt and the dataset is highly imbalanced, that is, the frequency of non-fraudulent cases outnumbers the frequency of fraudulent cases. In the case of the European credit card dataset, we have a ratio of approximately one fraudulent case to five hundred and seventy-eight non-fraudulent cases. Different methods were implemented to overcome this problem, namely random undersampling, one-sided sampling, SMOTE combined with Tomek links and parameter tuning. Predictive classifiers, namely logistic regression, decision trees, k-nearest neighbour, support vector machine and multilayer perceptrons, are applied to predict if a transaction is fraudulent or non-fraudulent. The model's performance is evaluated based on recall, precision, F1-score, the area under receiver operating characteristics curve, geometric mean and Matthew correlation coefficient. The results showed that the logistic regression classifier performed better than other classifiers except when the dataset was oversampled. , Thesis (MSc) -- Faculty of Science, Statistics, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Hamlomo, Sisipho
- Date: 2022-04-06
- Subjects: Credit card fraud , Bootstrap (Statistics) , Support vector machines , Neural networks (Computer science) , Decision trees , Machine learning , Cross-validation , Imbalanced data
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/233795 , vital:50128
- Description: Credit card fraud is an ever-growing problem. There has been a rapid increase in the rate of fraudulent activities in recent years resulting in a considerable loss to several organizations, companies, and government agencies. Many researchers have focused on detecting fraudulent behaviours early using advanced machine learning techniques. However, credit card fraud detection is not a straightforward task since fraudulent behaviours usually differ for each attempt and the dataset is highly imbalanced, that is, the frequency of non-fraudulent cases outnumbers the frequency of fraudulent cases. In the case of the European credit card dataset, we have a ratio of approximately one fraudulent case to five hundred and seventy-eight non-fraudulent cases. Different methods were implemented to overcome this problem, namely random undersampling, one-sided sampling, SMOTE combined with Tomek links and parameter tuning. Predictive classifiers, namely logistic regression, decision trees, k-nearest neighbour, support vector machine and multilayer perceptrons, are applied to predict if a transaction is fraudulent or non-fraudulent. The model's performance is evaluated based on recall, precision, F1-score, the area under receiver operating characteristics curve, geometric mean and Matthew correlation coefficient. The results showed that the logistic regression classifier performed better than other classifiers except when the dataset was oversampled. , Thesis (MSc) -- Faculty of Science, Statistics, 2022
- Full Text:
- Date Issued: 2022-04-06
The biology and movement patterns of non-native common carp, cyprinus carpio (l) in Groenvlei, South Africa
- Authors: Mukhari, Dinah Lorraine
- Date: 2022-04-06
- Subjects: Carp South Africa Goukamma Nature Reserve , Introduced fishes South Africa Goukamma Nature Reserve , Carp Behavior South Africa Goukamma Nature Reserve , Carp South Africa Goukamma Nature Reserve Growth , Carp Habitat South Africa Goukamma Nature Reserve , Carp South Africa Goukamma Nature Reserve Reproduction , Habitat conservation South Africa Goukamma Nature Reserve , Aquatic resources conservation South Africa Goukamma Nature Reserve
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291233 , vital:56834
- Description: The common carp, Cyprinus carpio is a highly invasive fish species, first introduced into South Africa in the late nineteen century, and now widely spread throughout the country. In 1991 carp were illegally introduced to Groenvlei, within the Goukamma Nature Reserve in the Western Cape Province. Decreases in water quality and declines in biota have been attributed to the now large numbers of carp. Management measures have commenced to reduce the carp population, however these are not underpinned by science as little is known about the biology and movement patterns of resident carp. The age, growth and maturity of carp within the lake was determined using oxytetracycline hydrochloride marked asteriscus otoliths and macroscopic gonad development staging methods. The results showed that carp in Groenvlei had similar growth characteristics to the invasive populations in North America and Australia; fast growth during the first three to five years and reproductive maturity attained between the ages of two to three years, and are long lived (maximum age of 20 years old). Their growth however differed from the only other study on a South African population. Six acoustically tagged carp were manually tracked in order to report on their movement patterns and habitat use. Carp moved much greater distances in February compared to October and November, and occupied different areas of the lake. In November they were found to aggregate in backwaters which corresponds with their breeding activities. Literature on global carp control shows that whilst eradication of this fish can be achieved in small isolated waters using icthyocides and water drawdowns, in conservation priority areas such as Groenvlei where this is not possible, mechanical removal using multiple gears targeting vulnerable life stages can most efficient at controlling carp. This study identified where and when these methods could be focused to optimise control efforts. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Mukhari, Dinah Lorraine
- Date: 2022-04-06
- Subjects: Carp South Africa Goukamma Nature Reserve , Introduced fishes South Africa Goukamma Nature Reserve , Carp Behavior South Africa Goukamma Nature Reserve , Carp South Africa Goukamma Nature Reserve Growth , Carp Habitat South Africa Goukamma Nature Reserve , Carp South Africa Goukamma Nature Reserve Reproduction , Habitat conservation South Africa Goukamma Nature Reserve , Aquatic resources conservation South Africa Goukamma Nature Reserve
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291233 , vital:56834
- Description: The common carp, Cyprinus carpio is a highly invasive fish species, first introduced into South Africa in the late nineteen century, and now widely spread throughout the country. In 1991 carp were illegally introduced to Groenvlei, within the Goukamma Nature Reserve in the Western Cape Province. Decreases in water quality and declines in biota have been attributed to the now large numbers of carp. Management measures have commenced to reduce the carp population, however these are not underpinned by science as little is known about the biology and movement patterns of resident carp. The age, growth and maturity of carp within the lake was determined using oxytetracycline hydrochloride marked asteriscus otoliths and macroscopic gonad development staging methods. The results showed that carp in Groenvlei had similar growth characteristics to the invasive populations in North America and Australia; fast growth during the first three to five years and reproductive maturity attained between the ages of two to three years, and are long lived (maximum age of 20 years old). Their growth however differed from the only other study on a South African population. Six acoustically tagged carp were manually tracked in order to report on their movement patterns and habitat use. Carp moved much greater distances in February compared to October and November, and occupied different areas of the lake. In November they were found to aggregate in backwaters which corresponds with their breeding activities. Literature on global carp control shows that whilst eradication of this fish can be achieved in small isolated waters using icthyocides and water drawdowns, in conservation priority areas such as Groenvlei where this is not possible, mechanical removal using multiple gears targeting vulnerable life stages can most efficient at controlling carp. This study identified where and when these methods could be focused to optimise control efforts. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
The diversity and dry season habitat associations of fish communities in the Kabompo River Basin, Upper Zambezi, Zambia
- Authors: Rennie, Craig Lawrence
- Date: 2022-04-06
- Subjects: Biodiversity Zambia Kabompo District , Ecology Zambia Kabompo District , Fish communities Zambia Kabompo District , Fishes Ecology Zambia Kabompo District , Freshwater habitats Zambia Kabompo District , Fishes Effect of human beings on Zambia Kabompo District , Fishes Climatic factors Zambia Kabompo District , Mesohabitat
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232261 , vital:49976
- Description: The Zambezian headwaters contain diverse fish communities which support thriving fisheries. This region and its fishes are under pressure from multiple anthropogenic threats, including overexploitation and large-scale developments with potential knock-on effects for the riparian communities. Previous studies have focused on known fisheries areas and the mainstem Zambezi River, neglecting large tributaries such as the Kabompo River. Consequently, little literature is available on the diversity and ecology of the fishes that inhabit these large tributaries, hindering the effective management and protection of biodiversity. This study aimed to fill the current knowledge gaps in the diversity and habitat associations of fish communities in the Upper Zambezi, using the Kabompo River as a case study. The first objective was to provide an updated checklist of the fishes of the Kabompo River basin using a compilation of historical data and field surveys. This study detailed the occurrence and distribution of 83 fish species within the Kabompo River basin. All these species have been recorded in the Upper Zambezi, with some of their ranges extending into the Middle (29 species) and Lower Zambezi (23 species) while others have more restricted distributions. The most diverse families were the Cyprinidae (26 species) and the Cichlidae (15 species). A number of potential undescribed species, whose taxonomic distinctiveness need further investigation were also collected. Taxonomic conflicts are also highlighted for some of the taxa that were previously considered to have broad geographic ranges or disjunct distributions. Consistent with findings from other studies within the region, the current taxonomy underestimates the diversity of fishes in the Kabompo River and Upper Zambezi. The second objective was to assess the habitat use of small-bodied fish communities during the low-flow period in 2019. Reconnaissance trips identified dominant mesohabitats along the middle Kabompo River around Jivundu. A total of 139 mesohabitats were sampled across the five dominant mesohabitats identified; Phragmites mauritianus, wood, rock, Vallisneria aethiopica and bare substrate. Catch per unit effort, species richness, Shannon diversity and Pielou’s evenness differed significantly between these mesohabitats. Twenty-six species showed significant associations (p < 0.05) with a specific mesohabitat type or environmental variable (current velocity or depth). Eight species were associated with the woody habitat, with three of these, E. radiatus, E. unitaeniatus, and P. ngamensis being almost exclusively associated with this habitat. Enteromius kerstenii, E. lineomaculatus and S. depressirostris were almost exclusively associated with P. mauritianus and represent potential indicator species for this habitat. A number of species were also with both P. mauritianus and woody habitats. Nine species showed statistically significant associations with the rocky mesohabitat, with Amphilius uranoscopus and Petrocephalus longicapitis, being almost exclusive to rocky sections of the river. Therefore, species such as A. uranoscopus are potential indicators for monitoring the integrity of rocky habitats under threat from sedimentation. The strong associations indicate that this comprehensive baseline may be valuable indicators/ proxies for identifying anthropogenic induced change in the Kabompo basin. This would provide a basis to determine fish responses to regional environmental changes associated with human activities. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Rennie, Craig Lawrence
- Date: 2022-04-06
- Subjects: Biodiversity Zambia Kabompo District , Ecology Zambia Kabompo District , Fish communities Zambia Kabompo District , Fishes Ecology Zambia Kabompo District , Freshwater habitats Zambia Kabompo District , Fishes Effect of human beings on Zambia Kabompo District , Fishes Climatic factors Zambia Kabompo District , Mesohabitat
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232261 , vital:49976
- Description: The Zambezian headwaters contain diverse fish communities which support thriving fisheries. This region and its fishes are under pressure from multiple anthropogenic threats, including overexploitation and large-scale developments with potential knock-on effects for the riparian communities. Previous studies have focused on known fisheries areas and the mainstem Zambezi River, neglecting large tributaries such as the Kabompo River. Consequently, little literature is available on the diversity and ecology of the fishes that inhabit these large tributaries, hindering the effective management and protection of biodiversity. This study aimed to fill the current knowledge gaps in the diversity and habitat associations of fish communities in the Upper Zambezi, using the Kabompo River as a case study. The first objective was to provide an updated checklist of the fishes of the Kabompo River basin using a compilation of historical data and field surveys. This study detailed the occurrence and distribution of 83 fish species within the Kabompo River basin. All these species have been recorded in the Upper Zambezi, with some of their ranges extending into the Middle (29 species) and Lower Zambezi (23 species) while others have more restricted distributions. The most diverse families were the Cyprinidae (26 species) and the Cichlidae (15 species). A number of potential undescribed species, whose taxonomic distinctiveness need further investigation were also collected. Taxonomic conflicts are also highlighted for some of the taxa that were previously considered to have broad geographic ranges or disjunct distributions. Consistent with findings from other studies within the region, the current taxonomy underestimates the diversity of fishes in the Kabompo River and Upper Zambezi. The second objective was to assess the habitat use of small-bodied fish communities during the low-flow period in 2019. Reconnaissance trips identified dominant mesohabitats along the middle Kabompo River around Jivundu. A total of 139 mesohabitats were sampled across the five dominant mesohabitats identified; Phragmites mauritianus, wood, rock, Vallisneria aethiopica and bare substrate. Catch per unit effort, species richness, Shannon diversity and Pielou’s evenness differed significantly between these mesohabitats. Twenty-six species showed significant associations (p < 0.05) with a specific mesohabitat type or environmental variable (current velocity or depth). Eight species were associated with the woody habitat, with three of these, E. radiatus, E. unitaeniatus, and P. ngamensis being almost exclusively associated with this habitat. Enteromius kerstenii, E. lineomaculatus and S. depressirostris were almost exclusively associated with P. mauritianus and represent potential indicator species for this habitat. A number of species were also with both P. mauritianus and woody habitats. Nine species showed statistically significant associations with the rocky mesohabitat, with Amphilius uranoscopus and Petrocephalus longicapitis, being almost exclusive to rocky sections of the river. Therefore, species such as A. uranoscopus are potential indicators for monitoring the integrity of rocky habitats under threat from sedimentation. The strong associations indicate that this comprehensive baseline may be valuable indicators/ proxies for identifying anthropogenic induced change in the Kabompo basin. This would provide a basis to determine fish responses to regional environmental changes associated with human activities. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
The effects of temperature and exploitation on the behaviour of red roman Chrysoblephus laticeps (Sparidae) at baited video stations
- Authors: Mataboge, Bontle Boitumelo
- Date: 2022-04-06
- Subjects: Marine resources conservation South Africa Agulhas , Sparidae Effect of temperature on South Africa Agulhas , Sparidae Climatic factors South Africa Agulhas , Sparidae Effect of fishing on South Africa Agulhas , Sparidae Effect of human beings on South Africa Agulhas , Sparidae Behavior South Africa Agulhas , Overfishing South Africa Agulhas , Underwater videography in wildlife monitoring South Africa Agulhas , Red roman (Chrysoblephus laticeps)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291140 , vital:56823
- Description: Marine environments are experiencing rapidly increasing temperatures, sea levels and acidification and higher frequencies and magnitudes of extreme weather events as a result of climate change. In the Agulhas Ecoregion of South Africa, there has been an increase in the frequency and intensity of upwelling events. Upwelling events result in rapid and large decreases in water temperature which can persist for several days. Variation in water temperature is known to impact the metabolic rate of fish (which are ectotherms) and in turn their activity patterns. To promote fitness related traits, the metabolic rate of fish is maximised at a specific temperature range. Outside of this optimal temperature range, the capacity of fish to perform aerobically declines. Therefore, it is expected that an increase in upwelling may place the fish under significant physiological stress. The effects of climate change can be compounded by the effects of fisheries-induced evolution; the microevolution of a fish population due to the artificial selection of certain biological traits by fishing practices. Passive fishing gears preferentially remove large (older) and bold individuals, causing reductions in population size, genetic diversity and fecundity as well as size and age truncation and the loss of large, bold and dominant phenotypes in fish populations. These demographic changes affect the adaptive capacity of fish and exploited populations are expected to be less resilient to climate variability and long-term temperature change. The resilience of fish is largely dependent on their physiological attributes, particularly their metabolic rate. Theoretically, fish with broader aerobic scope (defined as the difference between an individual’s maximum metabolic rate and standard metabolic rate) will be more tolerant to the impacts of climate change as they have energy available for adaptation. Recent respirometry and accelerometry studies suggest that populations of the endemic southern African linefish Chrysoblephus laticeps (red roman) from inside marine protected areas (MPAs) have higher metabolic rates and broader aerobic scope compared to those found outside of MPAs, particularly at thermal extremes. As C. laticeps are highly resident it is possible that fish populations protected within well-established MPAs may be more resilient to the physiological stresses caused by upwelling if they are able to maintain their activity levels despite changing temperatures. Behaviour is a proxy that can be used to infer metabolism as behaviours have associated metabolic costs and benefits. Behaviour is also a trait that can be altered by passive fishing practices which preferentially extract more active and bold individuals. Given this context, the aim of this thesis was to determine the effects of short-term thermal variability on the population structure and behaviour of C. laticeps and whether these effects differed between protected and exploited populations. Baited remote underwater stereo-video systems (stereo-BRUVs) were used to observe C. laticeps inside two MPAs (Tsitsikamma and Goukamma) and at two exploited sites (Port Elizabeth and Cape St. Francis) over the temperature range 10-18 °C. The relative abundance, size and relevant behaviours of C. laticeps were recorded. The relative abundance (MaxN) of C. laticeps was not significantly higher inside the MPAs compared to the exploited sites. The size of C. laticeps did not vary significantly by protection level either. However, the mean size of C. laticeps was considerably smaller at Port Elizabeth compared to the three other locations. There was a notable absence of large C. laticeps size classes at Port Elizabeth. The effect of water temperature on relative abundance was only seen in the exploited areas, where temperature and abundance were positively correlated. This was not the case in the protected areas where C. laticeps abundance remained roughly consistent. Generally, the effect of temperature on all measured behaviours was consistent across protection levels. An exception was that the feeding rate at Tsitsikamma MPA was significantly higher than at Cape St. Francis at temperatures below 11.5 °C. Temperature had a significant effect on the time taken for the first individual to appear in the field of view. This time shortened with increasing temperature, regardless of protection level. This was likely a result of the metabolic constraints placed on individuals by low waters temperatures and individuals would be able to pursue the bait more readily at higher temperatures. However, there was no evidence of greater metabolic scope from the C. laticeps individuals observed in the MPAs, relative to the exploited areas. Individual size and the presence of conspecifics were also found to significantly influence behaviour. Generally, size had a positive relationship with behaviour, with larger individuals more likely to feed on the bait, chase other fish from the bait (only in the MPAs) and spend more time in the field of view. The higher displays of aggression in MPAs may be an indication of fishing practices having removed bold and dominant individuals at the exploited sites. The probability of fleeing and the feeding rates of individuals increased with increasing numbers of conspecifics, suggesting that C. laticeps behaviour is influenced by intraspecific competition. Overall, this thesis did not find strong evidence that C. laticeps from MPAs performed better than C. laticeps from exploited areas, even at low temperatures. Behavioural responses to temperature were highly variable across locations and this may be attributed to high behavioural phenotypic diversity among individuals. Environmental stressors, such as temperature changes, can illicit very different behavioural responses among individuals in a population. It is also possible that C. laticeps from the exploited areas have the same genetic predispositions to physiological stress as the individuals in the MPAs due to spillover and larval recruitment from the MPAs. Indeed, genetic studies find that all C. laticeps population in South African represent a single well-mixed genetic stock. It is likely that greater sampling effort is required to resolve the patterns in behaviour between exploited and protected populations. Nonetheless, given the influence of size on behaviour, the smaller size of C. laticeps at Port Elizabeth may be cause for concern regarding the vulnerability of future populations to ongoing climate change. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Mataboge, Bontle Boitumelo
- Date: 2022-04-06
- Subjects: Marine resources conservation South Africa Agulhas , Sparidae Effect of temperature on South Africa Agulhas , Sparidae Climatic factors South Africa Agulhas , Sparidae Effect of fishing on South Africa Agulhas , Sparidae Effect of human beings on South Africa Agulhas , Sparidae Behavior South Africa Agulhas , Overfishing South Africa Agulhas , Underwater videography in wildlife monitoring South Africa Agulhas , Red roman (Chrysoblephus laticeps)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291140 , vital:56823
- Description: Marine environments are experiencing rapidly increasing temperatures, sea levels and acidification and higher frequencies and magnitudes of extreme weather events as a result of climate change. In the Agulhas Ecoregion of South Africa, there has been an increase in the frequency and intensity of upwelling events. Upwelling events result in rapid and large decreases in water temperature which can persist for several days. Variation in water temperature is known to impact the metabolic rate of fish (which are ectotherms) and in turn their activity patterns. To promote fitness related traits, the metabolic rate of fish is maximised at a specific temperature range. Outside of this optimal temperature range, the capacity of fish to perform aerobically declines. Therefore, it is expected that an increase in upwelling may place the fish under significant physiological stress. The effects of climate change can be compounded by the effects of fisheries-induced evolution; the microevolution of a fish population due to the artificial selection of certain biological traits by fishing practices. Passive fishing gears preferentially remove large (older) and bold individuals, causing reductions in population size, genetic diversity and fecundity as well as size and age truncation and the loss of large, bold and dominant phenotypes in fish populations. These demographic changes affect the adaptive capacity of fish and exploited populations are expected to be less resilient to climate variability and long-term temperature change. The resilience of fish is largely dependent on their physiological attributes, particularly their metabolic rate. Theoretically, fish with broader aerobic scope (defined as the difference between an individual’s maximum metabolic rate and standard metabolic rate) will be more tolerant to the impacts of climate change as they have energy available for adaptation. Recent respirometry and accelerometry studies suggest that populations of the endemic southern African linefish Chrysoblephus laticeps (red roman) from inside marine protected areas (MPAs) have higher metabolic rates and broader aerobic scope compared to those found outside of MPAs, particularly at thermal extremes. As C. laticeps are highly resident it is possible that fish populations protected within well-established MPAs may be more resilient to the physiological stresses caused by upwelling if they are able to maintain their activity levels despite changing temperatures. Behaviour is a proxy that can be used to infer metabolism as behaviours have associated metabolic costs and benefits. Behaviour is also a trait that can be altered by passive fishing practices which preferentially extract more active and bold individuals. Given this context, the aim of this thesis was to determine the effects of short-term thermal variability on the population structure and behaviour of C. laticeps and whether these effects differed between protected and exploited populations. Baited remote underwater stereo-video systems (stereo-BRUVs) were used to observe C. laticeps inside two MPAs (Tsitsikamma and Goukamma) and at two exploited sites (Port Elizabeth and Cape St. Francis) over the temperature range 10-18 °C. The relative abundance, size and relevant behaviours of C. laticeps were recorded. The relative abundance (MaxN) of C. laticeps was not significantly higher inside the MPAs compared to the exploited sites. The size of C. laticeps did not vary significantly by protection level either. However, the mean size of C. laticeps was considerably smaller at Port Elizabeth compared to the three other locations. There was a notable absence of large C. laticeps size classes at Port Elizabeth. The effect of water temperature on relative abundance was only seen in the exploited areas, where temperature and abundance were positively correlated. This was not the case in the protected areas where C. laticeps abundance remained roughly consistent. Generally, the effect of temperature on all measured behaviours was consistent across protection levels. An exception was that the feeding rate at Tsitsikamma MPA was significantly higher than at Cape St. Francis at temperatures below 11.5 °C. Temperature had a significant effect on the time taken for the first individual to appear in the field of view. This time shortened with increasing temperature, regardless of protection level. This was likely a result of the metabolic constraints placed on individuals by low waters temperatures and individuals would be able to pursue the bait more readily at higher temperatures. However, there was no evidence of greater metabolic scope from the C. laticeps individuals observed in the MPAs, relative to the exploited areas. Individual size and the presence of conspecifics were also found to significantly influence behaviour. Generally, size had a positive relationship with behaviour, with larger individuals more likely to feed on the bait, chase other fish from the bait (only in the MPAs) and spend more time in the field of view. The higher displays of aggression in MPAs may be an indication of fishing practices having removed bold and dominant individuals at the exploited sites. The probability of fleeing and the feeding rates of individuals increased with increasing numbers of conspecifics, suggesting that C. laticeps behaviour is influenced by intraspecific competition. Overall, this thesis did not find strong evidence that C. laticeps from MPAs performed better than C. laticeps from exploited areas, even at low temperatures. Behavioural responses to temperature were highly variable across locations and this may be attributed to high behavioural phenotypic diversity among individuals. Environmental stressors, such as temperature changes, can illicit very different behavioural responses among individuals in a population. It is also possible that C. laticeps from the exploited areas have the same genetic predispositions to physiological stress as the individuals in the MPAs due to spillover and larval recruitment from the MPAs. Indeed, genetic studies find that all C. laticeps population in South African represent a single well-mixed genetic stock. It is likely that greater sampling effort is required to resolve the patterns in behaviour between exploited and protected populations. Nonetheless, given the influence of size on behaviour, the smaller size of C. laticeps at Port Elizabeth may be cause for concern regarding the vulnerability of future populations to ongoing climate change. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-04-06
The invasion autecology of Iris pseudacorus L. (Iridaceae) in South Africa
- Authors: Sandenbergh, Emma
- Date: 2022-04-06
- Subjects: Iris pseudacorus South Africa , Invasive plants South Africa , Aquatic weeds South Africa , Plant genetics South Africa , Freshwater ecology South Africa , Iris pseudacorus Geographical distribution , Phytogeography
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232272 , vital:49977
- Description: Iris pseudacorus L. (Iridaceae) is an emergent aquatic macrophyte originating from Europe, north Africa, and western Asia, and is becoming an increasingly problematic invader in South Africa. By forming dense rhizomatic mats in the absence of natural enemies, I. pseudacorus outcompetes co-occurring indigenous biota, causing serious environmental and socioeconomic challenges. Iris pseudacorus is a declared invader in South Africa, Argentina, New Zealand, the United States of America, and Canada, but little information is known regarding the species’ invasive potential, particularly in the southern hemisphere, hindering the effectiveness of control efforts. This study addresses this knowledge gap in a South African context, providing valuable insight into the invasion autecology of I. pseudacorus in South Africa. For effective management and control of I. pseudacorus in South Africa and the global south, its distribution and invasive potential must be determined, and its population genetics understood. Hence, this study aimed to map the current confirmed distribution of I. pseudacorus populations in South Africa, investigating the relative abundance of I. pseudacorus individuals in each population, and comparing their sexual reproductive outputs. Moreover, this study assessed the competitive interactions between I. pseudacorus and co-occurring native species T. capensis, and examined the genetic diversity present between and within South African I. pseudacorus populations. Through field surveys, I. pseudacorus infestations were confirmed in eight of the country’s nine provinces, with the highest number of infestations recorded in the urban hubs, and greatest population abundances reported in the warmer, wetter regions of South Africa. These surveys indicated that South African I. pseudacorus populations have enhanced their sexual reproductive output relative to native range populations, and a germination rate of ~ 83 % was determined in the laboratory. The results of a common garden competition experiment indicated that T. capensis may be a superior competitor over I. pseudacorus, but this was not supported by field observations, and may be a result of the short duration of the experiment. Using inter-simple sequence repeats (ISSRs), high genetic diversity was observed within and between populations of I. pseudacorus, indicating the employment of sexual reproductive strategies, and providing evidence for gene-flow between and within populations. Moreover, a weak negative correlation was observed between geographic distance and genetic similarity, ii indicating a largely anthropogenic spread of I. pseudacorus, and suggesting the occurrence of fewer founding events than reported in the United States. This study provides useful insight into the invasion autecology of I. pseudacorus in South Africa, contributing to the ongoing research surrounding I. pseudacorus invasions worldwide, particularly in the southern hemisphere. These results contribute to the development of appropriate adaptive and integrated management strategies to control I. pseudacorus invasions in South Africa, and should be implemented before South African I. pseudacorus infestations reach the severity observed elsewhere. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Sandenbergh, Emma
- Date: 2022-04-06
- Subjects: Iris pseudacorus South Africa , Invasive plants South Africa , Aquatic weeds South Africa , Plant genetics South Africa , Freshwater ecology South Africa , Iris pseudacorus Geographical distribution , Phytogeography
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232272 , vital:49977
- Description: Iris pseudacorus L. (Iridaceae) is an emergent aquatic macrophyte originating from Europe, north Africa, and western Asia, and is becoming an increasingly problematic invader in South Africa. By forming dense rhizomatic mats in the absence of natural enemies, I. pseudacorus outcompetes co-occurring indigenous biota, causing serious environmental and socioeconomic challenges. Iris pseudacorus is a declared invader in South Africa, Argentina, New Zealand, the United States of America, and Canada, but little information is known regarding the species’ invasive potential, particularly in the southern hemisphere, hindering the effectiveness of control efforts. This study addresses this knowledge gap in a South African context, providing valuable insight into the invasion autecology of I. pseudacorus in South Africa. For effective management and control of I. pseudacorus in South Africa and the global south, its distribution and invasive potential must be determined, and its population genetics understood. Hence, this study aimed to map the current confirmed distribution of I. pseudacorus populations in South Africa, investigating the relative abundance of I. pseudacorus individuals in each population, and comparing their sexual reproductive outputs. Moreover, this study assessed the competitive interactions between I. pseudacorus and co-occurring native species T. capensis, and examined the genetic diversity present between and within South African I. pseudacorus populations. Through field surveys, I. pseudacorus infestations were confirmed in eight of the country’s nine provinces, with the highest number of infestations recorded in the urban hubs, and greatest population abundances reported in the warmer, wetter regions of South Africa. These surveys indicated that South African I. pseudacorus populations have enhanced their sexual reproductive output relative to native range populations, and a germination rate of ~ 83 % was determined in the laboratory. The results of a common garden competition experiment indicated that T. capensis may be a superior competitor over I. pseudacorus, but this was not supported by field observations, and may be a result of the short duration of the experiment. Using inter-simple sequence repeats (ISSRs), high genetic diversity was observed within and between populations of I. pseudacorus, indicating the employment of sexual reproductive strategies, and providing evidence for gene-flow between and within populations. Moreover, a weak negative correlation was observed between geographic distance and genetic similarity, ii indicating a largely anthropogenic spread of I. pseudacorus, and suggesting the occurrence of fewer founding events than reported in the United States. This study provides useful insight into the invasion autecology of I. pseudacorus in South Africa, contributing to the ongoing research surrounding I. pseudacorus invasions worldwide, particularly in the southern hemisphere. These results contribute to the development of appropriate adaptive and integrated management strategies to control I. pseudacorus invasions in South Africa, and should be implemented before South African I. pseudacorus infestations reach the severity observed elsewhere. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
- Date Issued: 2022-04-06
The quality of higher education and its influence on graduate employability and employer perception
- Authors: Mqingwana, Siviwe Nokulinda
- Date: 2022-04-06
- Subjects: Employability , Career education , Education, Higher Aims and objectives , College graduates Employment , Universities and colleges Ratings and rankings , Labor supply Effect of education on , College graduates Vocational guidance
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284526 , vital:56071
- Description: This study examined the quality of higher education and its influence on graduate employability and employer perception. Through determining the factors influencing graduates’ employment by employers and also the elements that induce employers in employing graduates, this was achieved. This research is rooted in a positivist perspective determining the relationship between graduate employability and a universities’ status. The main goal of this research was to examine to what extent employers are influenced by a higher education institution's perceived reputation when employing graduates. The linear regression model was used to predict the relationship between graduate employability (dependent variable) and the perceived reputation of the university by employers and citations of the university. This was achieved using quantitative methods. The quantitative database that this research relied on is Quacquarelli Symonds (QS) world university ranking. This research made use of descriptive data analysis as well as linear regression. The data set analysis showed citations of the institution had a significant negative relationship with the rate of employability (although this was a relatively weak relationship). The reputation of the institution and the number of international students enrolled do not affect the rate of employability. The analysed data set also showed that the number of citations of a university had a significant impact on the rate of employability at the 10% significance level. As such, higher education institutions need to consider including current market demand into their offerings to improve their graduate’s employability. , Thesis (MBA) -- Faculty of Commerce, Rhodes Business School, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Mqingwana, Siviwe Nokulinda
- Date: 2022-04-06
- Subjects: Employability , Career education , Education, Higher Aims and objectives , College graduates Employment , Universities and colleges Ratings and rankings , Labor supply Effect of education on , College graduates Vocational guidance
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/284526 , vital:56071
- Description: This study examined the quality of higher education and its influence on graduate employability and employer perception. Through determining the factors influencing graduates’ employment by employers and also the elements that induce employers in employing graduates, this was achieved. This research is rooted in a positivist perspective determining the relationship between graduate employability and a universities’ status. The main goal of this research was to examine to what extent employers are influenced by a higher education institution's perceived reputation when employing graduates. The linear regression model was used to predict the relationship between graduate employability (dependent variable) and the perceived reputation of the university by employers and citations of the university. This was achieved using quantitative methods. The quantitative database that this research relied on is Quacquarelli Symonds (QS) world university ranking. This research made use of descriptive data analysis as well as linear regression. The data set analysis showed citations of the institution had a significant negative relationship with the rate of employability (although this was a relatively weak relationship). The reputation of the institution and the number of international students enrolled do not affect the rate of employability. The analysed data set also showed that the number of citations of a university had a significant impact on the rate of employability at the 10% significance level. As such, higher education institutions need to consider including current market demand into their offerings to improve their graduate’s employability. , Thesis (MBA) -- Faculty of Commerce, Rhodes Business School, 2022
- Full Text:
- Date Issued: 2022-04-06
The regulation of privacy on cloud computing services in terms of the Protection of Personal Information Act 4 of 2013
- Authors: Malahleka, Mthuthukisi
- Date: 2022-04-06
- Subjects: South Africa. Protection of Personal Information Act, 2013 , Cloud computing Law and legislation South Africa , Data protection Law and legislation South Africa , Personal information management South Africa , Data privacy South Africa , Computer security Law and legislation South Africa , General Data Protection Regulation (GDPR)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290731 , vital:56779
- Description: There is a relatively new development in Information Technology (IT) space known as cloud computing, software and service delivered remotely through the Internet without installing software on a computer. Cloud computing has quickly gathered steam as one of the most prominent topics in IT, and indeed within the business sector as a whole. Cloud computing is one such development associated with opportunities and benefits, especially in the commercial sector. Due to the development of IT and many businesses adopting e-commerce business-related strategies, cloud computing has revolutionised how personal information is processed. The advent of cloud computing as a mechanism to process personal information has brought many legal challenges for protecting the right to privacy enshrined under section 14 of the South African Constitution, which is a vulnerable part of one’s personality right. The right to privacy has long been protected even before adopting the Constitution under the common law of delict (actio iniuriarumn). As the adoption rate of cloud computing services by businesses continues to increase, the legal considerations and risks become more prevalent. The lawmakers struggle to keep pace with the rapidly changing technological advancements, at least for now. Both the common law and the Constitution could not address all the legal aspects of data protection and the adoption of cloud computing services hence the promulgation of the Protection of Personal Information Act 4 of 2013 (POPI Act). The POPI Act’s main objective is to protect the personal information of both natural and juristic persons. Personal information about an individual forms part of privacy. Unlawful processing of such personal information is a violation of the right to privacy of an individual. It is now widely recognised that the unregulated processing of personal information significantly impacts fundamental human rights like privacy, personality, and autonomy. A close analysis of cloud computing regulation is necessary, as legal protection mechanisms must safeguard the processing of personal information and establish extraterritorial jurisdiction to regulate the use of cloud computing within national legislation as cloud computing provides a transnational characteristic on the cross-border flow of personal information. In this thesis, a question is asked on whether the current data protection laws in South Africa on protecting the right to privacy in the cloud computing services context are adequate. The analysis will determine whether the overlaps between these pieces of data protection laws are competent to deal with the ever-increasing threats on the right to privacy and if they meet the international data protection standards set by the European Union’s General Data Protection Regulation (GDPR). The research seeks to analyse and reveal the shortcomings under the Constitution and the common law that led to adopting the POPI Act by studying the regulation of cloud computing services. This analysis will determine the shortcomings of the POPI Act as well in the context of cloud computing. The research will then follow a comparative analysis of the POPI Act and the GDPR to determine the application of the GDPR on international data breaches and compare its provisions with the POPI Act in the context of cloud computing. Finally, the research will address the question as to whether a multi-faceted approach, which includes a Model Law on cloud computing, would be an appropriate starting point setting out requirements for the use of this technology can be sufficient in protecting data subjects. And as cloud computing risks are not only a national but also a global problem, South Africa needs to look at the option of entering into mutual agreements with other countries and organisations to regulate cloud computing at an international level. , Thesis (LLM) -- Faculty of Law, Law, 2022
- Full Text:
- Date Issued: 2022-04-06
- Authors: Malahleka, Mthuthukisi
- Date: 2022-04-06
- Subjects: South Africa. Protection of Personal Information Act, 2013 , Cloud computing Law and legislation South Africa , Data protection Law and legislation South Africa , Personal information management South Africa , Data privacy South Africa , Computer security Law and legislation South Africa , General Data Protection Regulation (GDPR)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/290731 , vital:56779
- Description: There is a relatively new development in Information Technology (IT) space known as cloud computing, software and service delivered remotely through the Internet without installing software on a computer. Cloud computing has quickly gathered steam as one of the most prominent topics in IT, and indeed within the business sector as a whole. Cloud computing is one such development associated with opportunities and benefits, especially in the commercial sector. Due to the development of IT and many businesses adopting e-commerce business-related strategies, cloud computing has revolutionised how personal information is processed. The advent of cloud computing as a mechanism to process personal information has brought many legal challenges for protecting the right to privacy enshrined under section 14 of the South African Constitution, which is a vulnerable part of one’s personality right. The right to privacy has long been protected even before adopting the Constitution under the common law of delict (actio iniuriarumn). As the adoption rate of cloud computing services by businesses continues to increase, the legal considerations and risks become more prevalent. The lawmakers struggle to keep pace with the rapidly changing technological advancements, at least for now. Both the common law and the Constitution could not address all the legal aspects of data protection and the adoption of cloud computing services hence the promulgation of the Protection of Personal Information Act 4 of 2013 (POPI Act). The POPI Act’s main objective is to protect the personal information of both natural and juristic persons. Personal information about an individual forms part of privacy. Unlawful processing of such personal information is a violation of the right to privacy of an individual. It is now widely recognised that the unregulated processing of personal information significantly impacts fundamental human rights like privacy, personality, and autonomy. A close analysis of cloud computing regulation is necessary, as legal protection mechanisms must safeguard the processing of personal information and establish extraterritorial jurisdiction to regulate the use of cloud computing within national legislation as cloud computing provides a transnational characteristic on the cross-border flow of personal information. In this thesis, a question is asked on whether the current data protection laws in South Africa on protecting the right to privacy in the cloud computing services context are adequate. The analysis will determine whether the overlaps between these pieces of data protection laws are competent to deal with the ever-increasing threats on the right to privacy and if they meet the international data protection standards set by the European Union’s General Data Protection Regulation (GDPR). The research seeks to analyse and reveal the shortcomings under the Constitution and the common law that led to adopting the POPI Act by studying the regulation of cloud computing services. This analysis will determine the shortcomings of the POPI Act as well in the context of cloud computing. The research will then follow a comparative analysis of the POPI Act and the GDPR to determine the application of the GDPR on international data breaches and compare its provisions with the POPI Act in the context of cloud computing. Finally, the research will address the question as to whether a multi-faceted approach, which includes a Model Law on cloud computing, would be an appropriate starting point setting out requirements for the use of this technology can be sufficient in protecting data subjects. And as cloud computing risks are not only a national but also a global problem, South Africa needs to look at the option of entering into mutual agreements with other countries and organisations to regulate cloud computing at an international level. , Thesis (LLM) -- Faculty of Law, Law, 2022
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- Date Issued: 2022-04-06