Investigation into the extended capabilities of the new DPS-4D ionosonde
- Authors: Ssessanga, Nicholas
- Date: 2011
- Subjects: Ionosondes , Ionosphere , Ionosphere -- Observations -- South Africa -- Hermanus (Cape of Good Hope) , Ionosphere -- Research -- South Africa -- Hermanus (Cape of Good Hope)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5472 , http://hdl.handle.net/10962/d1005257 , Ionosondes , Ionosphere , Ionosphere -- Observations -- South Africa -- Hermanus (Cape of Good Hope) , Ionosphere -- Research -- South Africa -- Hermanus (Cape of Good Hope)
- Description: The DPS-4D is the latest version of digital ionosonde developed by the UMLCAR (University of Massachusetts in Lowell Center for Atmospheric Research) in 2008. This new ionosonde has advances in both the hardware and software which allows for the promised advanced capabilities. The aim of this thesis was to present results from an experiment undertaken using the Hermanus DPS-4D (34.4°S 19.2°E, South Africa), the first of this version to be installed globally, to answer a science question outside of the normally expected capabilities of an ionosonde. The science question posed focused on the ability of the DPS-4D to provide information on day-time Pc3 pulsations evident in the ionosphere. Day-time Pc3 ULF waves propagating down through the ionosphere cause oscillations in the Doppler shift of High Frequency (HF) radio transmissions that are correlated with the magnetic pulsations recorded on the ground. Evidence is presented which shows that no correlation exists between the ground magnetic pulsation data and DPS-4D ionospheric data. The conclusion was reached that although the DPS-4D is more advanced in its eld of technology than its predecessors it may not be used to observe Pc3 pulsations.
- Full Text:
- Date Issued: 2011
- Authors: Ssessanga, Nicholas
- Date: 2011
- Subjects: Ionosondes , Ionosphere , Ionosphere -- Observations -- South Africa -- Hermanus (Cape of Good Hope) , Ionosphere -- Research -- South Africa -- Hermanus (Cape of Good Hope)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5472 , http://hdl.handle.net/10962/d1005257 , Ionosondes , Ionosphere , Ionosphere -- Observations -- South Africa -- Hermanus (Cape of Good Hope) , Ionosphere -- Research -- South Africa -- Hermanus (Cape of Good Hope)
- Description: The DPS-4D is the latest version of digital ionosonde developed by the UMLCAR (University of Massachusetts in Lowell Center for Atmospheric Research) in 2008. This new ionosonde has advances in both the hardware and software which allows for the promised advanced capabilities. The aim of this thesis was to present results from an experiment undertaken using the Hermanus DPS-4D (34.4°S 19.2°E, South Africa), the first of this version to be installed globally, to answer a science question outside of the normally expected capabilities of an ionosonde. The science question posed focused on the ability of the DPS-4D to provide information on day-time Pc3 pulsations evident in the ionosphere. Day-time Pc3 ULF waves propagating down through the ionosphere cause oscillations in the Doppler shift of High Frequency (HF) radio transmissions that are correlated with the magnetic pulsations recorded on the ground. Evidence is presented which shows that no correlation exists between the ground magnetic pulsation data and DPS-4D ionospheric data. The conclusion was reached that although the DPS-4D is more advanced in its eld of technology than its predecessors it may not be used to observe Pc3 pulsations.
- Full Text:
- Date Issued: 2011
Investigations of the assessment of bioequivalence of topical clotrimazole products using a dermatopharmacokinetic approach
- Authors: Parfitt, Natalie Rae
- Date: 2011 , 2010-07-05
- Subjects: Dermatopharmacology , Drugs -- Therapeutic equivalency , Antifungal agents , Therapeutics, Cutaneous and external
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3840 , http://hdl.handle.net/10962/d1007659 , Dermatopharmacology , Drugs -- Therapeutic equivalency , Antifungal agents , Therapeutics, Cutaneous and external
- Description: The specialised nature of the stratum corneum makes it an efficient barrier to foreign substances, including drug molecules. Therefore, cutaneous drug absorption is a slow and complex process of which stratum corneum penetration is the rate limiting step. The rate and extent of stratum corneum penetration by a drug compound depends greatly on the presence of penetration enhancing/retarding excipients and therefore the clinical outcomes of a product rely greatly on the components and quality of the formulation. Hence, establishing bioequivalence between topical products is crucial to ensure that patients receiving multisource drug products are assured of the same efficacy and safety as the brand product. Since locally acting topical formulations do not target the systemic circulation, conventional methods of assessing bioequivalence using plasma levels are not appropriate. Consequently, the current regulatory guidelines require comparative clinical trials to be carried out to show bioequivalence between topical products. As these studies are very expensive and time consuming, the development of a more direct and relatively rapid and inexpensive method for determining bioequivalence between topical products is required. Clotrimazole is an anti-fungal agent where the target site of action is in the stratum corneum. In this work, tape stripping, which involves the sampling of stratum corneum, was investigated as a tool for the determination of bioequivalence between topical clotrimazole products. The tape stripping method involved the analysis of each tape strip individually and standardization of stratum corneum thickness between subjects was carried out using TEWL measurements. This approach provided detailed information regarding the amount of clotrimazole present in the stratum corneum as well as the extent of drug penetration. Prior to the tape stripping studies an HPLC method was developed for the quantitative analysis of clotrimazole from the tape strip samples. This method was shown to be accurate and reproducible across the required range. It was also shown to be selective for clotrimazole in the presence of possible interfering substances such as those present in the tape adhesive and also skin components. The bioequivalence studies were conducted using a single “uptake” time point. In order to determine an appropriate dose duration for these studies a novel approach was employed, involving a preliminary dose duration study. For the bioequivalence investigations, Canesten® Topical cream was used as both test and reference products to determine if the method was capable of showing bioequivalence. Subsequently, Canesten® Topical cream was also compared to a 1% gel formulation to determine if the method could detect formulation differences. The conventional BE limits of 0.8 – 1.25 were used for the assessment of BE, however, the clinical relevance of using these limits for dermal studies is debatable since they are derived from oral pharmacokinetic studies. Therefore, the data from the tape stripping investigations were also assessed using more realistic limits of 0.75 – 1.33 and even 0.7 – 1.44. In addition to the tape stripping studies a novel method of determining the amount of drug present in the stratum corneum, the “Residual Method”, was investigated. This method involved assaying the amount of clotrimazole found in the residual formulation after a specified dose duration had elapsed and subtracting that amount from the amount of clotrimazole initially applied. The results of tape stripping investigations showed that, if the study is sufficiently powered, tape stripping may be used to determine bioequivalence according to the conventional limits, as well as possibly detect formulation differences between different clotrimazole products. Bioequivalence assessment using the widened intervals showed that fewer subjects were required to achieve a sufficient statistical power. The variability associated with this method was acceptable and tape stripping may therefore have the potential to be used as a BE tool in a regulatory setting for clotrimazole or other antifungal topical formulations. The “Residual Method” also showed promising results as a bioequivalence tool, but further investigation and extensive validation of this method is required before it can be suggested as a regulatory method. The results of these studies have clearly indicated that tape stripping has the potential to be used as an alternative to comparative clinical trails for the assessment of bioequivalence between clotrimazole formulations and also to assess bioequivalence between other antifungal products.
- Full Text:
- Date Issued: 2011
- Authors: Parfitt, Natalie Rae
- Date: 2011 , 2010-07-05
- Subjects: Dermatopharmacology , Drugs -- Therapeutic equivalency , Antifungal agents , Therapeutics, Cutaneous and external
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3840 , http://hdl.handle.net/10962/d1007659 , Dermatopharmacology , Drugs -- Therapeutic equivalency , Antifungal agents , Therapeutics, Cutaneous and external
- Description: The specialised nature of the stratum corneum makes it an efficient barrier to foreign substances, including drug molecules. Therefore, cutaneous drug absorption is a slow and complex process of which stratum corneum penetration is the rate limiting step. The rate and extent of stratum corneum penetration by a drug compound depends greatly on the presence of penetration enhancing/retarding excipients and therefore the clinical outcomes of a product rely greatly on the components and quality of the formulation. Hence, establishing bioequivalence between topical products is crucial to ensure that patients receiving multisource drug products are assured of the same efficacy and safety as the brand product. Since locally acting topical formulations do not target the systemic circulation, conventional methods of assessing bioequivalence using plasma levels are not appropriate. Consequently, the current regulatory guidelines require comparative clinical trials to be carried out to show bioequivalence between topical products. As these studies are very expensive and time consuming, the development of a more direct and relatively rapid and inexpensive method for determining bioequivalence between topical products is required. Clotrimazole is an anti-fungal agent where the target site of action is in the stratum corneum. In this work, tape stripping, which involves the sampling of stratum corneum, was investigated as a tool for the determination of bioequivalence between topical clotrimazole products. The tape stripping method involved the analysis of each tape strip individually and standardization of stratum corneum thickness between subjects was carried out using TEWL measurements. This approach provided detailed information regarding the amount of clotrimazole present in the stratum corneum as well as the extent of drug penetration. Prior to the tape stripping studies an HPLC method was developed for the quantitative analysis of clotrimazole from the tape strip samples. This method was shown to be accurate and reproducible across the required range. It was also shown to be selective for clotrimazole in the presence of possible interfering substances such as those present in the tape adhesive and also skin components. The bioequivalence studies were conducted using a single “uptake” time point. In order to determine an appropriate dose duration for these studies a novel approach was employed, involving a preliminary dose duration study. For the bioequivalence investigations, Canesten® Topical cream was used as both test and reference products to determine if the method was capable of showing bioequivalence. Subsequently, Canesten® Topical cream was also compared to a 1% gel formulation to determine if the method could detect formulation differences. The conventional BE limits of 0.8 – 1.25 were used for the assessment of BE, however, the clinical relevance of using these limits for dermal studies is debatable since they are derived from oral pharmacokinetic studies. Therefore, the data from the tape stripping investigations were also assessed using more realistic limits of 0.75 – 1.33 and even 0.7 – 1.44. In addition to the tape stripping studies a novel method of determining the amount of drug present in the stratum corneum, the “Residual Method”, was investigated. This method involved assaying the amount of clotrimazole found in the residual formulation after a specified dose duration had elapsed and subtracting that amount from the amount of clotrimazole initially applied. The results of tape stripping investigations showed that, if the study is sufficiently powered, tape stripping may be used to determine bioequivalence according to the conventional limits, as well as possibly detect formulation differences between different clotrimazole products. Bioequivalence assessment using the widened intervals showed that fewer subjects were required to achieve a sufficient statistical power. The variability associated with this method was acceptable and tape stripping may therefore have the potential to be used as a BE tool in a regulatory setting for clotrimazole or other antifungal topical formulations. The “Residual Method” also showed promising results as a bioequivalence tool, but further investigation and extensive validation of this method is required before it can be suggested as a regulatory method. The results of these studies have clearly indicated that tape stripping has the potential to be used as an alternative to comparative clinical trails for the assessment of bioequivalence between clotrimazole formulations and also to assess bioequivalence between other antifungal products.
- Full Text:
- Date Issued: 2011
Maintenance of university facilities in developing countries
- Authors: Bowazi, Kenneth Mtunduwatha
- Date: 2011
- Subjects: College facilities -- Developing countries , Educational planning -- Developing countries
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9723 , http://hdl.handle.net/10948/d1008472 , College facilities -- Developing countries , Educational planning -- Developing countries
- Description: Universities in developing countries are deteriorating physically due to lack of planned maintenance, lack of maintenance policies in the institutions, lack of up-to-date security system, and also lack of qualified personnel at decision-making level. Lack of planning leads to reactive maintenance. It also leads to unbudgeted expenditure and has an impact on the amount of money allocated to maintenance which results in unavailability of funds to carry out maintenance duties. Institutions which have no maintenance policy lack guidelines to follow when a maintenance problem arises. Most personnel in charge of maintenance are junior management or at supervisory level as a result they are not part of middle management that strategically directs the organisation. Most of the decisions made at supervisory scale are easily overruled at management level where the maintenance manager is not present during meetings to motivate maintenance cases. Lack of efficient security also allows vandalism to rise which contributes to the deterioration of facilities. Universities lack creativity and cost management skills to raise its own funds to supplement the maintenance budget, which is largely funded by the government. This study recommends employment of built environment professionals in decision-making positions. It also recommends that organizations should have a maintenance policy in place. Investment should be made in good security systems and management of the facilities should include income generating activities that could subsidise the maintenance budget.
- Full Text:
- Date Issued: 2011
- Authors: Bowazi, Kenneth Mtunduwatha
- Date: 2011
- Subjects: College facilities -- Developing countries , Educational planning -- Developing countries
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9723 , http://hdl.handle.net/10948/d1008472 , College facilities -- Developing countries , Educational planning -- Developing countries
- Description: Universities in developing countries are deteriorating physically due to lack of planned maintenance, lack of maintenance policies in the institutions, lack of up-to-date security system, and also lack of qualified personnel at decision-making level. Lack of planning leads to reactive maintenance. It also leads to unbudgeted expenditure and has an impact on the amount of money allocated to maintenance which results in unavailability of funds to carry out maintenance duties. Institutions which have no maintenance policy lack guidelines to follow when a maintenance problem arises. Most personnel in charge of maintenance are junior management or at supervisory level as a result they are not part of middle management that strategically directs the organisation. Most of the decisions made at supervisory scale are easily overruled at management level where the maintenance manager is not present during meetings to motivate maintenance cases. Lack of efficient security also allows vandalism to rise which contributes to the deterioration of facilities. Universities lack creativity and cost management skills to raise its own funds to supplement the maintenance budget, which is largely funded by the government. This study recommends employment of built environment professionals in decision-making positions. It also recommends that organizations should have a maintenance policy in place. Investment should be made in good security systems and management of the facilities should include income generating activities that could subsidise the maintenance budget.
- Full Text:
- Date Issued: 2011
Male and female cardiovascular risk in an urban, black working population
- Authors: Jackson, Lindsay May
- Date: 2011
- Subjects: Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5127 , http://hdl.handle.net/10962/d1005205 , Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Description: The aim of this research project was to assess and compare cardiovascular disease (CVD) risk in black males and females from an urban, working population in the Makana (Grahamstown) region of the Eastern Cape, South Africa. Two-hundred and ninety one individuals (males: n = 143, females: n = 148) with a mean age of 42.6 (±8.1) years were voluntarily recruited from the greater urban Makana (Grahamstown) area. Eight Cardiovascular disease (CVD) risks were assessed: stature and mass were obtained in order to calculate body mass index (BMI) (mass/stature2). Obesity, defined as a morphological risk, was classified according to the World Health Organisation (WHO) BMI criteria (BMI>30kg.m-2), as well as according to measures of waist circumference (WC) and body composition. Hypertension, hypercholesterolemia and type II diabetes, were grouped as cardiovascular (CV) risks. Hypertension was defined as a blood pressure greater than 140/90mmHg (JNC-7); hypercholesterolemia, as total cholesterol greater than 6.2mmol.L-1 (NCEP); and type II diabetes, as total glucose greater than 12mmol.L-1 (WHO). Physical activity, diet, tobacco use, and alcohol consumption and dependence were grouped as lifestyle-related risks. These were assessed by means of self-reporting through the use of various validated questionnaires. Finally, self-reporting of obesity, hypertension, hypercholesterolemia and type II diabetes was assessed, in addition to perception questions on individuals’ perceived body shape and size (Ziebland figures). Self-reported and perceived responses were then compared to actual measures. Females were significantly (p<0.001) heavier than the males (92.7kg compared to 72.1kg) and had significantly (p<0.001) higher BMIs than their male counterparts (37.6kg.m-2 compared to 25.7 kg.-2). They also recorded significantly (p<0.001) higher waist circumference (WC) values and had significantly (p<0.001) higher percentage and total body fat. Significantly (p<0.001) more females were obese (81%) compared to males (17%). While a higher percentage of males (25 % compared to 22%) presented with stage I hypertension (≥140/90mmHg, <160/95mmHg), significantly (p<0.05) more females (14% compared to 8%) presented with stage II hypertension (>160/95mmHg). The prevalence of hypercholesterolemia at a high level of risk (>6.2mmol.L-1) was relatively low (2.1 % of males, 3.4% of females), but notably more participants (22% of males and 26% of females) presented with the condition at a moderate level of risk (>5mmol.L-1). Type II diabetes was the least prevalent CV risk factor, with no males and only 3% of females presenting with the condition. Males consumed significantly (p<0.05) more in terms of total energy intake (9024 vs. 7234 kJ) and were significantly (p<0.05) more active (3315 compared to 2660 MET-mins.week). A significantly (p<0.05) higher percentage of males smoked (51.1% compared to 3.4%), consumed alcohol (73.4% compared to 46.6%) and were alcohol dependent (40% compared to 33.5%). Both males and females tended to be ignorant of their health status, with both samples under-reporting obesity, hypertension and hypercholesterolemia, while over-reporting type II diabetes. Furthermore, obesity was significantly (p<0.05) underestimated, with both male and female individuals perceiving themselves to be notably smaller than they actually were. Physical activity and diet were important determinants of CVD risk in this black urban sample of individuals. Obesity, in particular central adiposity, was the most notable risk (particularly in females), followed by hypertension (particularly in males). Although some risks presented at a moderate level of risk, a clustering of risk factors was evident in both samples, with 12.6% and 41.2% of males and females presenting with two risk factors, and 2.8% and 8.1% of males and females respectively presenting with three risks.
- Full Text:
- Date Issued: 2011
- Authors: Jackson, Lindsay May
- Date: 2011
- Subjects: Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5127 , http://hdl.handle.net/10962/d1005205 , Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Description: The aim of this research project was to assess and compare cardiovascular disease (CVD) risk in black males and females from an urban, working population in the Makana (Grahamstown) region of the Eastern Cape, South Africa. Two-hundred and ninety one individuals (males: n = 143, females: n = 148) with a mean age of 42.6 (±8.1) years were voluntarily recruited from the greater urban Makana (Grahamstown) area. Eight Cardiovascular disease (CVD) risks were assessed: stature and mass were obtained in order to calculate body mass index (BMI) (mass/stature2). Obesity, defined as a morphological risk, was classified according to the World Health Organisation (WHO) BMI criteria (BMI>30kg.m-2), as well as according to measures of waist circumference (WC) and body composition. Hypertension, hypercholesterolemia and type II diabetes, were grouped as cardiovascular (CV) risks. Hypertension was defined as a blood pressure greater than 140/90mmHg (JNC-7); hypercholesterolemia, as total cholesterol greater than 6.2mmol.L-1 (NCEP); and type II diabetes, as total glucose greater than 12mmol.L-1 (WHO). Physical activity, diet, tobacco use, and alcohol consumption and dependence were grouped as lifestyle-related risks. These were assessed by means of self-reporting through the use of various validated questionnaires. Finally, self-reporting of obesity, hypertension, hypercholesterolemia and type II diabetes was assessed, in addition to perception questions on individuals’ perceived body shape and size (Ziebland figures). Self-reported and perceived responses were then compared to actual measures. Females were significantly (p<0.001) heavier than the males (92.7kg compared to 72.1kg) and had significantly (p<0.001) higher BMIs than their male counterparts (37.6kg.m-2 compared to 25.7 kg.-2). They also recorded significantly (p<0.001) higher waist circumference (WC) values and had significantly (p<0.001) higher percentage and total body fat. Significantly (p<0.001) more females were obese (81%) compared to males (17%). While a higher percentage of males (25 % compared to 22%) presented with stage I hypertension (≥140/90mmHg, <160/95mmHg), significantly (p<0.05) more females (14% compared to 8%) presented with stage II hypertension (>160/95mmHg). The prevalence of hypercholesterolemia at a high level of risk (>6.2mmol.L-1) was relatively low (2.1 % of males, 3.4% of females), but notably more participants (22% of males and 26% of females) presented with the condition at a moderate level of risk (>5mmol.L-1). Type II diabetes was the least prevalent CV risk factor, with no males and only 3% of females presenting with the condition. Males consumed significantly (p<0.05) more in terms of total energy intake (9024 vs. 7234 kJ) and were significantly (p<0.05) more active (3315 compared to 2660 MET-mins.week). A significantly (p<0.05) higher percentage of males smoked (51.1% compared to 3.4%), consumed alcohol (73.4% compared to 46.6%) and were alcohol dependent (40% compared to 33.5%). Both males and females tended to be ignorant of their health status, with both samples under-reporting obesity, hypertension and hypercholesterolemia, while over-reporting type II diabetes. Furthermore, obesity was significantly (p<0.05) underestimated, with both male and female individuals perceiving themselves to be notably smaller than they actually were. Physical activity and diet were important determinants of CVD risk in this black urban sample of individuals. Obesity, in particular central adiposity, was the most notable risk (particularly in females), followed by hypertension (particularly in males). Although some risks presented at a moderate level of risk, a clustering of risk factors was evident in both samples, with 12.6% and 41.2% of males and females presenting with two risk factors, and 2.8% and 8.1% of males and females respectively presenting with three risks.
- Full Text:
- Date Issued: 2011
Marine anti-malarial isonitriles : a synthetic and computational study
- Authors: Adendorff, Matthew Ralph
- Date: 2011 , 2010-05-17
- Subjects: Isocyanides , Isocyanates , Marine pharmacology , Antimalarials , Antimalarials -- Development , Drug development
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4398 , http://hdl.handle.net/10962/d1006674 , Isocyanides , Isocyanates , Marine pharmacology , Antimalarials , Antimalarials -- Development , Drug development
- Description: The development of Plasmodium falciparum malarial resistance to the current armoury of anti-malarial drugs requires the development of new treatments to help combat this disease. The marine environment is a well established source of potential pharmaceuticals. Of interest to us are isonitrile, isocyanate and isothiocyanate compounds isolated from marine sponges and molluscs which have exhibited nano-molar anti-plasmodial activities. Through quantitative structure-activity relation studies (QSAR), a literature precedent exists for a pseudoreceptor model from which a pharmacophore for the design of novel anti-malarial agents was proposed. The current theory suggests that these marine compounds exert their inhibitory action through interfering with the heme detoxification pathway in P. falciparum. We propose that the computational methods used to draw detailed conclusions about the mode of action of these marine compounds were inadequate. This thesis addresses this problem using contemporary computational methodologies and seeks to propose a more robust method for the rational design of new anti-malarial drug compounds that inhibit heme polymerization to hemozoin. In order to investigate the interactions of the marine compounds with their heme targets, a series of modern computational procedures were formulated, validated and then applied to theoretical systems. The validations of these algorithms, before their application to the marine compound-heme systems, were achieved through two case studies. The first was used to investigate the applicability of the statistical docking algorithm AutoDock to be used for the exploration of conformational space around the heme target. A theoretical P. falciparum 1-deoxy-D-xylulose-5-phosphate reductoisomerase (PfDXR) enzyme model, constructed by the Biochemistry Department at Rhodes University, provided the ideal model to validate the AutoDock program. The protein model was accordingly subjected to rigorous docking simulations with over 30 different ligand molecules using the AutoDock algorithm which allowed for the docking algorithm’s limitations to be ascertained and improved upon. This investigation facilitated the successful validation of the protein model, which can now be used for the rational design of new PfDXR-inhibiting anti-plasmodial compounds, as well as enabling us to propose an improvement of the docking algorithm for application to the heme systems. The second case study was used to investigate the applicability of an ab initio molecular dynamics algorithm for simulation of bond breaking/forming events between the marine compounds and their heme target. This validation involved the exploration of intermolecular interactions in a naturally occurring nonoligomeric zipper using the Car-Parrinello Molecular Dynamics (CPMD) method. This study allowed us to propose a model for the intermolecular forces responsible for zipper self-assembly and showcased the CPMD method’s abilities to simulate and predict bond forming/breaking events. Data from the computational analyses suggested that the interactions between marine isonitriles, isocyanates and isothiocyanates occur through bond-less electrostatic attractions rather than through formal intermolecular bonds as had been previously suggested. Accordingly, a simple bicyclic tertiary isonitrile (5.14) was synthesized using Kitano et al’s relatively underutilized isonitrile synthetic method for the conversion of tertiary alcohols to their corresponding isonitriles. This compound’s potential for heme detoxification inhibition was then explored in vitro via the pyridine-hemochrome assay. The assay data suggested that the synthesized isonitrile was capable of inhibiting heme polymerization in a similar fashion to the known inhibitor chloroquine. Attempts to synthesize tricyclic analogues of 5.14 were unsuccessful and highlighted the limitation of Kitano et al’s isonitrile synthetic methodology.
- Full Text:
- Date Issued: 2011
- Authors: Adendorff, Matthew Ralph
- Date: 2011 , 2010-05-17
- Subjects: Isocyanides , Isocyanates , Marine pharmacology , Antimalarials , Antimalarials -- Development , Drug development
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4398 , http://hdl.handle.net/10962/d1006674 , Isocyanides , Isocyanates , Marine pharmacology , Antimalarials , Antimalarials -- Development , Drug development
- Description: The development of Plasmodium falciparum malarial resistance to the current armoury of anti-malarial drugs requires the development of new treatments to help combat this disease. The marine environment is a well established source of potential pharmaceuticals. Of interest to us are isonitrile, isocyanate and isothiocyanate compounds isolated from marine sponges and molluscs which have exhibited nano-molar anti-plasmodial activities. Through quantitative structure-activity relation studies (QSAR), a literature precedent exists for a pseudoreceptor model from which a pharmacophore for the design of novel anti-malarial agents was proposed. The current theory suggests that these marine compounds exert their inhibitory action through interfering with the heme detoxification pathway in P. falciparum. We propose that the computational methods used to draw detailed conclusions about the mode of action of these marine compounds were inadequate. This thesis addresses this problem using contemporary computational methodologies and seeks to propose a more robust method for the rational design of new anti-malarial drug compounds that inhibit heme polymerization to hemozoin. In order to investigate the interactions of the marine compounds with their heme targets, a series of modern computational procedures were formulated, validated and then applied to theoretical systems. The validations of these algorithms, before their application to the marine compound-heme systems, were achieved through two case studies. The first was used to investigate the applicability of the statistical docking algorithm AutoDock to be used for the exploration of conformational space around the heme target. A theoretical P. falciparum 1-deoxy-D-xylulose-5-phosphate reductoisomerase (PfDXR) enzyme model, constructed by the Biochemistry Department at Rhodes University, provided the ideal model to validate the AutoDock program. The protein model was accordingly subjected to rigorous docking simulations with over 30 different ligand molecules using the AutoDock algorithm which allowed for the docking algorithm’s limitations to be ascertained and improved upon. This investigation facilitated the successful validation of the protein model, which can now be used for the rational design of new PfDXR-inhibiting anti-plasmodial compounds, as well as enabling us to propose an improvement of the docking algorithm for application to the heme systems. The second case study was used to investigate the applicability of an ab initio molecular dynamics algorithm for simulation of bond breaking/forming events between the marine compounds and their heme target. This validation involved the exploration of intermolecular interactions in a naturally occurring nonoligomeric zipper using the Car-Parrinello Molecular Dynamics (CPMD) method. This study allowed us to propose a model for the intermolecular forces responsible for zipper self-assembly and showcased the CPMD method’s abilities to simulate and predict bond forming/breaking events. Data from the computational analyses suggested that the interactions between marine isonitriles, isocyanates and isothiocyanates occur through bond-less electrostatic attractions rather than through formal intermolecular bonds as had been previously suggested. Accordingly, a simple bicyclic tertiary isonitrile (5.14) was synthesized using Kitano et al’s relatively underutilized isonitrile synthetic method for the conversion of tertiary alcohols to their corresponding isonitriles. This compound’s potential for heme detoxification inhibition was then explored in vitro via the pyridine-hemochrome assay. The assay data suggested that the synthesized isonitrile was capable of inhibiting heme polymerization in a similar fashion to the known inhibitor chloroquine. Attempts to synthesize tricyclic analogues of 5.14 were unsuccessful and highlighted the limitation of Kitano et al’s isonitrile synthetic methodology.
- Full Text:
- Date Issued: 2011
Microwave Mediated synthesis of cyclic compounds
- Authors: Ndebvu, Rumbidzayi
- Date: 2011
- Subjects: Cyclic compounds -- Synthesis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:18488 , http://hdl.handle.net/11260/d1007382
- Description: The scope of microwave induced synthesis of various cyclic compounds was investigated and considerably expanded. The advantages of this synthetic method were clearly demonstrated when compared to conventional heating methods of organic synthesis. The exposure of organic compounds to continual Ultraviolet (UV) radiation damages the materials and reduces their chemical and physical properties and in most cases irreversibly and this is not only a concern for industry but for consumers as well. Particularly prevalent are incidences of skin cancer now linked to UV radiation. Research efforts are directed towards finding cheap and efficient UV-absorbers to protect such light sensitive materials. Phenyl salicylates and hydroxybenzophenones constitute families of UV-absorber compounds, and this has necessitated this research. The condensation of differently substituted phenols with salicylic acid, catalyzed by either phosphoric acid (PPA), POCl3/ZnCl2 or ZnCl2 afforded the anticipated phenolic type UV -absorber molecules such as phenyl salicylate, 4-hydroxyphenyl-2-hydroxybenzoate, 2,3-dihydroxyphenyl-2-hydroxyphenylbenzoate, 3-hydroxyphenyl-2-hydroxybenzoate, (2,4-dihydroxyphenyl)(2-hydroxyphenyl)methanone, (2,3-dihydroxyphenyl)(2-hydroxyphenyl) methanone and 1,3-dihydroxyxanthone. PPA proved to be a more efficient catalyst for the condensation of salicylic acid with phenol, hydroquinone, pyrogallol and catechol while POCl3/ZnCl2 gave higher yields for resorcinol and phloroglucinol. In all cases, ZnCl2 alone did not show significant yield enhancement. The second part of this research work describes a convenient one-pot synthesis of NMethyl-2-pyrrolidone (NMP) an important industrial solvent by a conventional heating process and by microwave irradiation. The intermediate N-Methyl-hydroxybutyramide formed from the exothermic reaction of =-butyrolactone with aqueous monomethylamine, underwent an intramolecular condensation reaction catalyzed by highly active copper powder to form the anticipated product in very good yields.
- Full Text:
- Date Issued: 2011
- Authors: Ndebvu, Rumbidzayi
- Date: 2011
- Subjects: Cyclic compounds -- Synthesis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:18488 , http://hdl.handle.net/11260/d1007382
- Description: The scope of microwave induced synthesis of various cyclic compounds was investigated and considerably expanded. The advantages of this synthetic method were clearly demonstrated when compared to conventional heating methods of organic synthesis. The exposure of organic compounds to continual Ultraviolet (UV) radiation damages the materials and reduces their chemical and physical properties and in most cases irreversibly and this is not only a concern for industry but for consumers as well. Particularly prevalent are incidences of skin cancer now linked to UV radiation. Research efforts are directed towards finding cheap and efficient UV-absorbers to protect such light sensitive materials. Phenyl salicylates and hydroxybenzophenones constitute families of UV-absorber compounds, and this has necessitated this research. The condensation of differently substituted phenols with salicylic acid, catalyzed by either phosphoric acid (PPA), POCl3/ZnCl2 or ZnCl2 afforded the anticipated phenolic type UV -absorber molecules such as phenyl salicylate, 4-hydroxyphenyl-2-hydroxybenzoate, 2,3-dihydroxyphenyl-2-hydroxyphenylbenzoate, 3-hydroxyphenyl-2-hydroxybenzoate, (2,4-dihydroxyphenyl)(2-hydroxyphenyl)methanone, (2,3-dihydroxyphenyl)(2-hydroxyphenyl) methanone and 1,3-dihydroxyxanthone. PPA proved to be a more efficient catalyst for the condensation of salicylic acid with phenol, hydroquinone, pyrogallol and catechol while POCl3/ZnCl2 gave higher yields for resorcinol and phloroglucinol. In all cases, ZnCl2 alone did not show significant yield enhancement. The second part of this research work describes a convenient one-pot synthesis of NMethyl-2-pyrrolidone (NMP) an important industrial solvent by a conventional heating process and by microwave irradiation. The intermediate N-Methyl-hydroxybutyramide formed from the exothermic reaction of =-butyrolactone with aqueous monomethylamine, underwent an intramolecular condensation reaction catalyzed by highly active copper powder to form the anticipated product in very good yields.
- Full Text:
- Date Issued: 2011
Modelling of the crystallisation process of highly concentrated ammonium nitrate emulsions
- Authors: Simpson, Brenton
- Date: 2011
- Subjects: Explosives , Blasting , Chemical explosives , Ammonium nitrate
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10415 , http://hdl.handle.net/10948/d1012622 , Explosives , Blasting , Chemical explosives , Ammonium nitrate
- Description: Highly concentrated ammonium nitrate emulsions are extensively used as an explosive in the mining industry. The emulsion is made from a supercooled aqueous salt solution with various stabilisers and an organic hydrocarbon phase under vigorous stirring to room temperature. The resulting emulsion is thermodynamically unstable and tends to crystallise over time. This is not suitable for the transportation or pumping of the emulsion in its application. This study showed that the crystallisation process of highly concentrated ammonium nitrate emulsions can be influenced by varying the emulsion droplet size as well as the types and ratios of surfactants used during the preparation stage. The results showed that there were significant differences in the rheological properties of the freshly-prepared emulsion, based on both the emulsion droplet size, and the type of surfactant and ratio of surfactants used. A decrease of the emulsion droplet size resulted in the increase of the elastic character, which can be explained by more compact network organisation of droplets. In terms of the different surfactants, it was shown that the Pibsa-Imide stabilised emulsions resulted in an emulsion with the highest storage modulus over the entire strain amplitude regions as well as the highest shear stresses over the whole shear rate region. The study showed that the relatively slow emulsion crystallisation process can be studied by using powder X-ray diffraction (PXRD). The amount of amorphous and crystalline phases present in the sample can be effectively quantified by using the Partial Or No Known Crystal Structural (PONKCS) method which can model accurately the contributions of the amorphous halo. An external standard calibration method, which used a different amorphous material with the crystalline material to obtain a suitable calibration constant, was employed. The results showed that the method would quantify the amount of the fully crystallised emulsion to be between 80 and 90 percent, which was in agreement with the solid content added during sample preparation and confirmed by Thermal Gravimetric Analysis (TGA). The simultaneous TGA / DSC results were able to show the number of solid/solid peak transitions as well as the total moisture content to be around 20 percent by mass in various emulsion samples studied. The study was able to model the crystallisation by using the Avrami and Tobin kinetic relationships which are commonly used for the crystallisation processes of polymers. The Avrami relationship proved to be useful in describing the type of crystallisation that occurred. This was based on literature where the exponent parameter (n) which was between 1 and 4 would relate to different types of crystallisation models. The results of this study showed that the crystallisation process would change for the samples that had shown a longer crystallisation process. The results indicated that the samples prepared with the lower Pibsa-Urea ratio showed a more sporadic crystallisation process, whereas the samples with the higher ratio of Pibsa-Urea showed a more controlled crystallisation process. The study also considered the rheological properties of the fresh emulsion, which showed that droplet size also had an influence on the stress strain relationship of the emulsion droplets.
- Full Text:
- Date Issued: 2011
- Authors: Simpson, Brenton
- Date: 2011
- Subjects: Explosives , Blasting , Chemical explosives , Ammonium nitrate
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10415 , http://hdl.handle.net/10948/d1012622 , Explosives , Blasting , Chemical explosives , Ammonium nitrate
- Description: Highly concentrated ammonium nitrate emulsions are extensively used as an explosive in the mining industry. The emulsion is made from a supercooled aqueous salt solution with various stabilisers and an organic hydrocarbon phase under vigorous stirring to room temperature. The resulting emulsion is thermodynamically unstable and tends to crystallise over time. This is not suitable for the transportation or pumping of the emulsion in its application. This study showed that the crystallisation process of highly concentrated ammonium nitrate emulsions can be influenced by varying the emulsion droplet size as well as the types and ratios of surfactants used during the preparation stage. The results showed that there were significant differences in the rheological properties of the freshly-prepared emulsion, based on both the emulsion droplet size, and the type of surfactant and ratio of surfactants used. A decrease of the emulsion droplet size resulted in the increase of the elastic character, which can be explained by more compact network organisation of droplets. In terms of the different surfactants, it was shown that the Pibsa-Imide stabilised emulsions resulted in an emulsion with the highest storage modulus over the entire strain amplitude regions as well as the highest shear stresses over the whole shear rate region. The study showed that the relatively slow emulsion crystallisation process can be studied by using powder X-ray diffraction (PXRD). The amount of amorphous and crystalline phases present in the sample can be effectively quantified by using the Partial Or No Known Crystal Structural (PONKCS) method which can model accurately the contributions of the amorphous halo. An external standard calibration method, which used a different amorphous material with the crystalline material to obtain a suitable calibration constant, was employed. The results showed that the method would quantify the amount of the fully crystallised emulsion to be between 80 and 90 percent, which was in agreement with the solid content added during sample preparation and confirmed by Thermal Gravimetric Analysis (TGA). The simultaneous TGA / DSC results were able to show the number of solid/solid peak transitions as well as the total moisture content to be around 20 percent by mass in various emulsion samples studied. The study was able to model the crystallisation by using the Avrami and Tobin kinetic relationships which are commonly used for the crystallisation processes of polymers. The Avrami relationship proved to be useful in describing the type of crystallisation that occurred. This was based on literature where the exponent parameter (n) which was between 1 and 4 would relate to different types of crystallisation models. The results of this study showed that the crystallisation process would change for the samples that had shown a longer crystallisation process. The results indicated that the samples prepared with the lower Pibsa-Urea ratio showed a more sporadic crystallisation process, whereas the samples with the higher ratio of Pibsa-Urea showed a more controlled crystallisation process. The study also considered the rheological properties of the fresh emulsion, which showed that droplet size also had an influence on the stress strain relationship of the emulsion droplets.
- Full Text:
- Date Issued: 2011
Modelling trends in evapotranspiration using the MODIS LAI for selected Eastern Cape catchments
- Authors: Finca, Andiswa
- Date: 2011
- Subjects: Evapotranspiration , Evapotranspiration -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10651 , http://hdl.handle.net/10948/d1009517 , Evapotranspiration , Evapotranspiration -- South Africa -- Eastern Cape
- Description: Grassland is the dominant vegetation cover of many of the 19 Water Catchment Areas within South Africa. The inappropriate management of some of these grassland catchments by the communities that depend on them for their livelihoods, often results in overgrazed lands with low biomass or invasive alien species. The short grass maintained by grazing policies of many communities results in high storm flows that have an adverse effect on the quantity and quality of runoff and recharge. Catchment-scale water balances depend on accurate estimates of run-off, recharge and evapotranspiration (ET). This study focuses on the ET component of the catchment scale water balance and explores the effect of two different grazing strategies on ET. To achieve this, two contrasting but adjacent quaternary catchments namely: P10A (a high biomass site) and Q91C (a low biomass site) were selected within the Bushman’s River Primary catchment as primary study sites. Within each catchment, a relatively homogenous pixel of 1 km was selected, representing contrasting example of high and low intensity grazing. From an eleven year MODIS leaf area index (LAI) data stack (March 2000 – 2010), 8-day LAI values was extracted for each pixel in each catchment. Using the Penman- Monteith equation, potential evapotranspiration (ET0) was calculated using data from a nearly automatic weather station. Actual evapotranspiration was estimated by adjusting ET0 using the values extracted from the MODIS LAI product. The MODIS LAI ET (ETMODIS) obtained for the eleven year period for both 1 km pixels decreased consistently, reflecting a general trend in declining LAI throughout the Eastern Cape. The highest ETMODIS obtained from P10A was 610.3 mm (2001) and the lowest was 333.1 mm (2009). Then from Q91C the highest ET obtained was 534.7 mm (2006) and the lowest was 266.2 mm (2009). The ETMODIS results were validated for each catchment using the Open Top Chamber (OTC) which sums the water lost from vegetation and soil within the chamber. This validation was conducted during the growing season of 2010–11. Wind speed; relative humidity and temperature were measured both at the inlet and the outlet of the chamber on five clear sunny days for each 1 km pixel. ETa for the same period was compared to the OTC ET (ETOTC) using the regression analysis and a good relationship was observed with the r2 of 0.7065. The relationship observed confirmed that ETOTC closely approximates ETMODIS and that the OTC can be used as a tool to validate MODIS LAI ET on clear, low winds and sunny days. In order to demonstrate proof-of-concept for the use of this modeling of ETMODIS within a Payment for Ecosystem Services framework, the approach was applied to two other quaternary catchments under communal tenure. Within each catchment, three land use scenarios were created for each catchment to reflect potential changes in the standing aboveground biomass. For Scenario 1, the status quo was maintained; for Scenario 2, MODIS pixels representing 28 km in each catchment were selected and the LAI of these pixels was doubled; and for scenario 3, LAI was halved. ETMODIS was calculated for each scenario by adjusting the ET0 data from a nearby automatic weather station with the MODIS LAI product. The results showed that the estimated annual ETMODIS obtained from the high biomass catchment was 111 mm greater than that obtained from the low biomass catchment. When comparing between the scenarios, the annual ETMODIS obtained from scenario 2 was the highest of the 3 scenarios for both sites. These results confirm that increased leaf area results in higher annual ETMODIS. This has a positive long term impact on stream flow, as high grass biomass allows the rainfall to infiltrate the soil and be gradually released to the dams with reduced magnitude of storm flows. This approach has the potential to quantify the benefits to down-stream water users of improving above-ground biomass in catchments.
- Full Text:
- Date Issued: 2011
- Authors: Finca, Andiswa
- Date: 2011
- Subjects: Evapotranspiration , Evapotranspiration -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10651 , http://hdl.handle.net/10948/d1009517 , Evapotranspiration , Evapotranspiration -- South Africa -- Eastern Cape
- Description: Grassland is the dominant vegetation cover of many of the 19 Water Catchment Areas within South Africa. The inappropriate management of some of these grassland catchments by the communities that depend on them for their livelihoods, often results in overgrazed lands with low biomass or invasive alien species. The short grass maintained by grazing policies of many communities results in high storm flows that have an adverse effect on the quantity and quality of runoff and recharge. Catchment-scale water balances depend on accurate estimates of run-off, recharge and evapotranspiration (ET). This study focuses on the ET component of the catchment scale water balance and explores the effect of two different grazing strategies on ET. To achieve this, two contrasting but adjacent quaternary catchments namely: P10A (a high biomass site) and Q91C (a low biomass site) were selected within the Bushman’s River Primary catchment as primary study sites. Within each catchment, a relatively homogenous pixel of 1 km was selected, representing contrasting example of high and low intensity grazing. From an eleven year MODIS leaf area index (LAI) data stack (March 2000 – 2010), 8-day LAI values was extracted for each pixel in each catchment. Using the Penman- Monteith equation, potential evapotranspiration (ET0) was calculated using data from a nearly automatic weather station. Actual evapotranspiration was estimated by adjusting ET0 using the values extracted from the MODIS LAI product. The MODIS LAI ET (ETMODIS) obtained for the eleven year period for both 1 km pixels decreased consistently, reflecting a general trend in declining LAI throughout the Eastern Cape. The highest ETMODIS obtained from P10A was 610.3 mm (2001) and the lowest was 333.1 mm (2009). Then from Q91C the highest ET obtained was 534.7 mm (2006) and the lowest was 266.2 mm (2009). The ETMODIS results were validated for each catchment using the Open Top Chamber (OTC) which sums the water lost from vegetation and soil within the chamber. This validation was conducted during the growing season of 2010–11. Wind speed; relative humidity and temperature were measured both at the inlet and the outlet of the chamber on five clear sunny days for each 1 km pixel. ETa for the same period was compared to the OTC ET (ETOTC) using the regression analysis and a good relationship was observed with the r2 of 0.7065. The relationship observed confirmed that ETOTC closely approximates ETMODIS and that the OTC can be used as a tool to validate MODIS LAI ET on clear, low winds and sunny days. In order to demonstrate proof-of-concept for the use of this modeling of ETMODIS within a Payment for Ecosystem Services framework, the approach was applied to two other quaternary catchments under communal tenure. Within each catchment, three land use scenarios were created for each catchment to reflect potential changes in the standing aboveground biomass. For Scenario 1, the status quo was maintained; for Scenario 2, MODIS pixels representing 28 km in each catchment were selected and the LAI of these pixels was doubled; and for scenario 3, LAI was halved. ETMODIS was calculated for each scenario by adjusting the ET0 data from a nearby automatic weather station with the MODIS LAI product. The results showed that the estimated annual ETMODIS obtained from the high biomass catchment was 111 mm greater than that obtained from the low biomass catchment. When comparing between the scenarios, the annual ETMODIS obtained from scenario 2 was the highest of the 3 scenarios for both sites. These results confirm that increased leaf area results in higher annual ETMODIS. This has a positive long term impact on stream flow, as high grass biomass allows the rainfall to infiltrate the soil and be gradually released to the dams with reduced magnitude of storm flows. This approach has the potential to quantify the benefits to down-stream water users of improving above-ground biomass in catchments.
- Full Text:
- Date Issued: 2011
Mohair and wool fibre surface structure and lustre determination
- Ndlovu, Ntombizikhona Beaulah
- Authors: Ndlovu, Ntombizikhona Beaulah
- Date: 2011
- Subjects: Mohair and wool fibre -- Lustre
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:18484 , http://hdl.handle.net/11260/d1006641
- Description: Textiles have always been one of the essential materials for people and have a great variety of uses such as in clothing, agriculture, medical, automotive and aerospace applications. The sort of properties needed for any type of fabric basically depend on the structure of the fibre surface. Of many geometric attributes that can be used to describe the surface appearance of a fibre, yarn, or fabric sample, one of the more common is lustre. Mohair and wool fibre surface structure have been studied using optical microscopy and Atomic Force Microscopy (AFM). Optical microscopy was also used to take fibre diameter measurements. Another technique, goniophotometry, was used to make quantitative lustre measurements of mohair and wool fibres. The surface structure of mohair has got a faint pattern of scales where the scales are generally unpronounced or flat and relatively long. Wool has got a scaly surface structure where the scales overlap leading to interlocking of fibres. The scale configuration on the surface of mohair and wool fibres also differs. A qualitative connection between fibre lustre and the fibre surface structure was found. Because of its smooth surface relative to that of wool, mohair reflects a greater amount of incident light specularly whereas wool reflects most of the incident light diffusely. In general, mohair fibres have a higher lustre than wool due to its less prominent cuticle structure found on its surface. Furthermore, mohair fibres with the smallest diameters give an even higher lustre.
- Full Text:
- Date Issued: 2011
- Authors: Ndlovu, Ntombizikhona Beaulah
- Date: 2011
- Subjects: Mohair and wool fibre -- Lustre
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:18484 , http://hdl.handle.net/11260/d1006641
- Description: Textiles have always been one of the essential materials for people and have a great variety of uses such as in clothing, agriculture, medical, automotive and aerospace applications. The sort of properties needed for any type of fabric basically depend on the structure of the fibre surface. Of many geometric attributes that can be used to describe the surface appearance of a fibre, yarn, or fabric sample, one of the more common is lustre. Mohair and wool fibre surface structure have been studied using optical microscopy and Atomic Force Microscopy (AFM). Optical microscopy was also used to take fibre diameter measurements. Another technique, goniophotometry, was used to make quantitative lustre measurements of mohair and wool fibres. The surface structure of mohair has got a faint pattern of scales where the scales are generally unpronounced or flat and relatively long. Wool has got a scaly surface structure where the scales overlap leading to interlocking of fibres. The scale configuration on the surface of mohair and wool fibres also differs. A qualitative connection between fibre lustre and the fibre surface structure was found. Because of its smooth surface relative to that of wool, mohair reflects a greater amount of incident light specularly whereas wool reflects most of the incident light diffusely. In general, mohair fibres have a higher lustre than wool due to its less prominent cuticle structure found on its surface. Furthermore, mohair fibres with the smallest diameters give an even higher lustre.
- Full Text:
- Date Issued: 2011
Nanostructures and metallophthalocyanines : applications in microbial fuel cells
- Authors: Edwards, Sean
- Date: 2011
- Subjects: Microbial fuel cells , Waste products as fuel , Nanostructured materials , Electrochemistry , Nanotubes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4107 , http://hdl.handle.net/10962/d1011742 , Microbial fuel cells , Waste products as fuel , Nanostructured materials , Electrochemistry , Nanotubes
- Description: Microbial fuel cells (MFCs) are a promising form of alternative energy capable of harnessing the potential energy stores in organic waste. The oxygen reduction reaction (ORR) forms an integral role in the generation of electricity in MFCs however it is also a potential obstacle in enhancing the performance of MFCs. Platinum, a commonly used catalyst for the ORR, is expensive and rare. Significant research has been conducted into developing alternative catalysts. Metallophthalocyanines (MPc) have garnered attention for use as catalysts. Iron phthalocyanine (FePc) has been shown to have catalytic activity towards the reduction of oxygen. Coupling of the catalyst to nanostructured carbon materials, such as multi-walled carbon nanotubes, has been observed to have several advantages as nanostructures have a high surface-to-volume ratio. In this study, we have attempted to assess the suitability of FePc, both its bulk and nanostructured form, as an oxygen reduction catalyst and acid functionalized multi-walled carbon nanotubes for use as a catalyst support using electrochemical techniques such as cyclic voltammetry and electrochemical impedance spectroscopy. We showed, for the first time, the catalytic nature of nanostructured FePc towards the ORR. Applying the data obtained from the electrochemical analyses, electrodes were modified using FePc and MWCNTs and applied to an Enterobacter cloacae-based MFC. Several operational parameters of the MFC, such as temperature and ionic strength, were optimized during the course of the study. We showed that optimized FePc:MWCNT-modified electrodes compared favourably to platinum-based electrodes in terms of power densities obtained in a microbial fuel cell.
- Full Text:
- Date Issued: 2011
- Authors: Edwards, Sean
- Date: 2011
- Subjects: Microbial fuel cells , Waste products as fuel , Nanostructured materials , Electrochemistry , Nanotubes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4107 , http://hdl.handle.net/10962/d1011742 , Microbial fuel cells , Waste products as fuel , Nanostructured materials , Electrochemistry , Nanotubes
- Description: Microbial fuel cells (MFCs) are a promising form of alternative energy capable of harnessing the potential energy stores in organic waste. The oxygen reduction reaction (ORR) forms an integral role in the generation of electricity in MFCs however it is also a potential obstacle in enhancing the performance of MFCs. Platinum, a commonly used catalyst for the ORR, is expensive and rare. Significant research has been conducted into developing alternative catalysts. Metallophthalocyanines (MPc) have garnered attention for use as catalysts. Iron phthalocyanine (FePc) has been shown to have catalytic activity towards the reduction of oxygen. Coupling of the catalyst to nanostructured carbon materials, such as multi-walled carbon nanotubes, has been observed to have several advantages as nanostructures have a high surface-to-volume ratio. In this study, we have attempted to assess the suitability of FePc, both its bulk and nanostructured form, as an oxygen reduction catalyst and acid functionalized multi-walled carbon nanotubes for use as a catalyst support using electrochemical techniques such as cyclic voltammetry and electrochemical impedance spectroscopy. We showed, for the first time, the catalytic nature of nanostructured FePc towards the ORR. Applying the data obtained from the electrochemical analyses, electrodes were modified using FePc and MWCNTs and applied to an Enterobacter cloacae-based MFC. Several operational parameters of the MFC, such as temperature and ionic strength, were optimized during the course of the study. We showed that optimized FePc:MWCNT-modified electrodes compared favourably to platinum-based electrodes in terms of power densities obtained in a microbial fuel cell.
- Full Text:
- Date Issued: 2011
Nearshore subtidal soft-bottom macrozoobenthic community structure in the western sector of Algoa Bay, South Africa
- Authors: Masikane, Ntuthuko Fortune
- Date: 2011
- Subjects: Benthic animals -- South Africa -- Algoa Bay , Benthos
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10684 , http://hdl.handle.net/10948/1466 , Benthic animals -- South Africa -- Algoa Bay , Benthos
- Description: The objectives of this study were to characterise macrozoobenthic community structure of the western sector of Algoa Bay, to identify the drivers of community structure and to develop a long-term monitoring framework. Data were collected from six study sites stratified along-shore. Each site comprised three stations; most sites were located in areas directly influenced by anthropogenic activities such as inflow from storm water drains and areas where dredged spoil was dumped. Other sites included areas in close proximity to estuary mouths. Physico-chemical parameters of the water column were measured with a YSI instrument, sediment for faunal and physico-chemical analyses was sampled with a Van Veen grab, and collected macrofauna were sedated and preserved pending analysis. In the laboratory, macrofauna were identified to finest taxonomic resolution possible under dissecting and compound microscopes, and enumerated. Sediment samples for physico-chemical analyses were kept frozen pending analysis. Up to 187 species belonging to 137 genera and 105 families were identified. Univariate community parameters such as abundance and number of species varied significantly along-shore, generally increasing towards less wave-exposed sites. Multivariate analyses revealed that community assemblages were heterogeneously distributed along-shore, corresponding to areas where anthropogenic influences such as effluent discharge and commercial harbour activities prevailed. During the 2008 survey, species assemblages separated into six groups corresponding to the six sites but xvii during the 2009 survey, species assemblages separated into four groups probably due to changes in environmental parameters such as the hydrodynamic regime. In both surveys the assemblage opposite a drainage canal (Papenkuils outfall) was distinct as it was dissimilar to all other assemblages. This site was also heterogeneous over relatively small spatial scales. Important physico-chemical variables influencing community structures during the 2008 survey included bottom measurements of temperature, salinity, dissolved oxygen, coarse sand and mud. During the 2009 survey, only bottom temperature and mud content were identified as important physico-chemical variables structuring community assemblages. The principal variable was probably the hydrodynamic regime, driving community structure at a larger scale in Algoa Bay. On a localised scale, communities were probably structured by other factors such as effluent discharges, influence of estuary mouths and activities associated with the harbour. With a lack of information on keystone species (regarded as good monitoring species) in Algoa Bay, it was proposed that groups that cumulatively comprise 50–75 percent of total abundance within communities be monitored annually. Included are amphipods, polychaetes, cumaceans, ostracods, tanaids and bivalves. It was also proposed that areas opposite estuary mouths, effluent outfalls and the dredged spoil dumpsite be monitored. This routine monitoring programme should be accompanied by periodic hypothesis driven research to assess the importance of stochastic events (e.g., upwelling) on macrozoobenthic community dynamics. Keywords: macrozoobenthos, soft-bottom, community assemblages, spatial distribution patterns, environmental drivers, long-term monitoring framework.
- Full Text:
- Date Issued: 2011
- Authors: Masikane, Ntuthuko Fortune
- Date: 2011
- Subjects: Benthic animals -- South Africa -- Algoa Bay , Benthos
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10684 , http://hdl.handle.net/10948/1466 , Benthic animals -- South Africa -- Algoa Bay , Benthos
- Description: The objectives of this study were to characterise macrozoobenthic community structure of the western sector of Algoa Bay, to identify the drivers of community structure and to develop a long-term monitoring framework. Data were collected from six study sites stratified along-shore. Each site comprised three stations; most sites were located in areas directly influenced by anthropogenic activities such as inflow from storm water drains and areas where dredged spoil was dumped. Other sites included areas in close proximity to estuary mouths. Physico-chemical parameters of the water column were measured with a YSI instrument, sediment for faunal and physico-chemical analyses was sampled with a Van Veen grab, and collected macrofauna were sedated and preserved pending analysis. In the laboratory, macrofauna were identified to finest taxonomic resolution possible under dissecting and compound microscopes, and enumerated. Sediment samples for physico-chemical analyses were kept frozen pending analysis. Up to 187 species belonging to 137 genera and 105 families were identified. Univariate community parameters such as abundance and number of species varied significantly along-shore, generally increasing towards less wave-exposed sites. Multivariate analyses revealed that community assemblages were heterogeneously distributed along-shore, corresponding to areas where anthropogenic influences such as effluent discharge and commercial harbour activities prevailed. During the 2008 survey, species assemblages separated into six groups corresponding to the six sites but xvii during the 2009 survey, species assemblages separated into four groups probably due to changes in environmental parameters such as the hydrodynamic regime. In both surveys the assemblage opposite a drainage canal (Papenkuils outfall) was distinct as it was dissimilar to all other assemblages. This site was also heterogeneous over relatively small spatial scales. Important physico-chemical variables influencing community structures during the 2008 survey included bottom measurements of temperature, salinity, dissolved oxygen, coarse sand and mud. During the 2009 survey, only bottom temperature and mud content were identified as important physico-chemical variables structuring community assemblages. The principal variable was probably the hydrodynamic regime, driving community structure at a larger scale in Algoa Bay. On a localised scale, communities were probably structured by other factors such as effluent discharges, influence of estuary mouths and activities associated with the harbour. With a lack of information on keystone species (regarded as good monitoring species) in Algoa Bay, it was proposed that groups that cumulatively comprise 50–75 percent of total abundance within communities be monitored annually. Included are amphipods, polychaetes, cumaceans, ostracods, tanaids and bivalves. It was also proposed that areas opposite estuary mouths, effluent outfalls and the dredged spoil dumpsite be monitored. This routine monitoring programme should be accompanied by periodic hypothesis driven research to assess the importance of stochastic events (e.g., upwelling) on macrozoobenthic community dynamics. Keywords: macrozoobenthos, soft-bottom, community assemblages, spatial distribution patterns, environmental drivers, long-term monitoring framework.
- Full Text:
- Date Issued: 2011
Neogene fluvial deposits along the south-west coast of South Africa understanding the palaeoclimate through proxies
- Authors: Sciscio, Lara
- Date: 2011
- Subjects: Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4981 , http://hdl.handle.net/10962/d1005593 , Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Description: Branched glycerol dialkyl glycerol tetraether (GDGTs) membrane lipids have been used as a new proxy for the reconstruction of terrestrial palaeoclimates. These biomarkers (or molecular ‗fossils‘) in conjunction with palynology, have been effective in the novel analysis of Miocene organic-rich sediments from three South African west coast sites at Rondeberg, Noordhoek and Langebaanweg. Lastly, a Quaternary south coast site at Rietvlei, South Africa, was also studied to further elucidate the extent of use of this new proxy. The fluvial peat and organic-rich deposits of the Elandsfontyn Formation (Sandveld Group) were investigated at Noordhoek, Langebaanweg and Rondeberg to provide new evidence for the climate and vegetation patterns during Miocene in this region. Drill-core and quarry samples from all four sites were freeze-dried, powered, and prepared for biogeochemical and palynological analyses. The methylation index of branched tetraethers (MBT) and cyclisation ratio of branched tetraethers (CBT) proxies were used to calculate the mean annual air temperature (MAAT) and pH values of the organic-rich horizons at time of deposition. The Branched versus isoprenoid index of tetraethers (BIT) was used to assess the relative contributions of marine archaeal and terrestrial bacterial tetraethers, and thereby assess the validity of the MBT, CBT and calculated palaeoenvironmental factors. The results presented in this thesis suggest that the use of the MBT/CBT proxy has significant potential in southern Africa, and may complement previously attempted palaeoclimatic and palaeoecological studies of Neogene-aged South African sediments. This type of research has the capacity to provide palaeoenvironmental information where other proxies may be absent. Results indicate that all sites yielded branched tetraether membrane lipids with the exception of Rondeberg, where GDGTs were below detection as a result of poor preservation conditions. Palynological investigation confirmed proxy derived temperatures. Furthermore palynomorph analyses supplemented earlier studies of the Noordhoek site and were piloted for the Rondeberg site, reaffirming alternating sequences of tropical and subtropical palynofloras. The MAATs, likewise, show variability and pronounced trends through time at the Langebaanweg and Noordhoek sites, generally corresponding with the variation and diversity of the pollen population. The terrestrial MAAT results appear to compliment Southern Hemisphere sea level changes associated with Antarctic glaciations. Additionally, this data shows a pattern similar to the Southern and Northern Hemisphere marine isotope records of relative fluctuations in the global climate and sea level change from the early to middle Miocene. The application of these past climate change indicators have been proved to be useful in the reconstruction of South Africa Miocene palaeoclimates, and may aid in understanding the consequences of climate change in the Cape region.
- Full Text:
- Date Issued: 2011
- Authors: Sciscio, Lara
- Date: 2011
- Subjects: Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4981 , http://hdl.handle.net/10962/d1005593 , Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Description: Branched glycerol dialkyl glycerol tetraether (GDGTs) membrane lipids have been used as a new proxy for the reconstruction of terrestrial palaeoclimates. These biomarkers (or molecular ‗fossils‘) in conjunction with palynology, have been effective in the novel analysis of Miocene organic-rich sediments from three South African west coast sites at Rondeberg, Noordhoek and Langebaanweg. Lastly, a Quaternary south coast site at Rietvlei, South Africa, was also studied to further elucidate the extent of use of this new proxy. The fluvial peat and organic-rich deposits of the Elandsfontyn Formation (Sandveld Group) were investigated at Noordhoek, Langebaanweg and Rondeberg to provide new evidence for the climate and vegetation patterns during Miocene in this region. Drill-core and quarry samples from all four sites were freeze-dried, powered, and prepared for biogeochemical and palynological analyses. The methylation index of branched tetraethers (MBT) and cyclisation ratio of branched tetraethers (CBT) proxies were used to calculate the mean annual air temperature (MAAT) and pH values of the organic-rich horizons at time of deposition. The Branched versus isoprenoid index of tetraethers (BIT) was used to assess the relative contributions of marine archaeal and terrestrial bacterial tetraethers, and thereby assess the validity of the MBT, CBT and calculated palaeoenvironmental factors. The results presented in this thesis suggest that the use of the MBT/CBT proxy has significant potential in southern Africa, and may complement previously attempted palaeoclimatic and palaeoecological studies of Neogene-aged South African sediments. This type of research has the capacity to provide palaeoenvironmental information where other proxies may be absent. Results indicate that all sites yielded branched tetraether membrane lipids with the exception of Rondeberg, where GDGTs were below detection as a result of poor preservation conditions. Palynological investigation confirmed proxy derived temperatures. Furthermore palynomorph analyses supplemented earlier studies of the Noordhoek site and were piloted for the Rondeberg site, reaffirming alternating sequences of tropical and subtropical palynofloras. The MAATs, likewise, show variability and pronounced trends through time at the Langebaanweg and Noordhoek sites, generally corresponding with the variation and diversity of the pollen population. The terrestrial MAAT results appear to compliment Southern Hemisphere sea level changes associated with Antarctic glaciations. Additionally, this data shows a pattern similar to the Southern and Northern Hemisphere marine isotope records of relative fluctuations in the global climate and sea level change from the early to middle Miocene. The application of these past climate change indicators have been proved to be useful in the reconstruction of South Africa Miocene palaeoclimates, and may aid in understanding the consequences of climate change in the Cape region.
- Full Text:
- Date Issued: 2011
Neuronal nitric oxide synthase : a biomarker for Alzheimers disease : interaction of neuronal nitric oxide synthase with beta-amyloid peptides in the brain
- Authors: Padayachee, Eden Rebecca
- Date: 2011 , 2013-07-19
- Subjects: Alzheimer's disease , Nitric-oxide synthase , Biochemical markers , Amyloid beta-protein , Peptide hormones
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4086 , http://hdl.handle.net/10962/d1007677 , Alzheimer's disease , Nitric-oxide synthase , Biochemical markers , Amyloid beta-protein , Peptide hormones
- Description: High levels of the amino acid arginine and low levels of the product citrulline in the cerebrospinal fluid of Alzheimer's patients could mean that there is a decrease in the enzymes that metabolize this amino acid. One such enzyme is neuronal nitric oxide synthase (nNOS). In this study, neuronal nitric oxide synthase (nNOS), sourced from bovine brain was extracted and concentrated using two methods of precipitation: poly (ethylene glycol) 20 000 (PEG) and ammonium sulphate [(NH₄)₂S0₄). These two techniques gave no increase in yield nor fold purification and hence were abandoned in favour of ion exchange chromatography by DEAE-Sepharose. The enzyme was then successfully purified by anion-exchange and after dialysis produced a 38% yield and three fold purification and yielded the highest specific activity of 2.27 U/mg. Neuronal nitric oxide synthase (nNOS) was a heterodimeric protein with a total molecular mass of ± 225 kDa (95 and 130 kDa monomers). The temperature and pH optima of the enzyme were 40⁰C and 6.5, respectively. The kinetic parameters (KM and Vmax) of nNOS were 70 μM and 0.332 μmol.min⁻¹, respectively. Moreover neuronal nitric oxide synthase (nNOS) was relatively stable at 40⁰C (t½ = 3 h). It was also confirmed that β-amyloid peptides inhibited nNOS when bound to the enzyme and that nNOS behaved as a catalyst in fibril formation through association-dissociation between enzyme and β-amyloid peptide. It was further shown that Aβ₁₇₋₂₈ inhibited nNOS the most with a Ki of 1.92 μM and also had the highest Stern-Volmer value (Ksv) of 0.11 μM⁻¹ indicating tight binding affinity to nNOS and easier accessibility to fluor molecules during binding. Congo red, turbidity, thioflavin-T assays and transmission electron microscopy were successfully used to detect and visualize the presence of fibrils by studying the process of fibrillogenesis. Computerized molecular modeling successfully studied protein dynamics and conformational changes of nNOS. These results correlated with resonance energy transfer (FRET) results which revealed the distance of tryptophan residues from the arginine bound at enzyme active site. Both the aforementioned techniques revealed that in the natural state of the enzyme with arginine bound at the active site, the tryptophan residues (TRP₆₂₅ and TRP₇₂₁) were positioned at the surface of the enzyme 28 Å away from the active site. When the amyloid peptide (Aβ₁₇₋₂₈) was bound to the active site, these same two amino acids moved 14 Å closer to the active site. A five residue hydrophobic fragment Aβ₁₇₋₂₁ [Leu₁₇ - Val₁₈ - Phe₁₉ - Phe₂₀ - Ala₁] within Aβ₁₇₋₂₈ was shown by computer modeling to be critical to the binding of the peptide to the active site of nNOS.
- Full Text:
- Date Issued: 2011
- Authors: Padayachee, Eden Rebecca
- Date: 2011 , 2013-07-19
- Subjects: Alzheimer's disease , Nitric-oxide synthase , Biochemical markers , Amyloid beta-protein , Peptide hormones
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4086 , http://hdl.handle.net/10962/d1007677 , Alzheimer's disease , Nitric-oxide synthase , Biochemical markers , Amyloid beta-protein , Peptide hormones
- Description: High levels of the amino acid arginine and low levels of the product citrulline in the cerebrospinal fluid of Alzheimer's patients could mean that there is a decrease in the enzymes that metabolize this amino acid. One such enzyme is neuronal nitric oxide synthase (nNOS). In this study, neuronal nitric oxide synthase (nNOS), sourced from bovine brain was extracted and concentrated using two methods of precipitation: poly (ethylene glycol) 20 000 (PEG) and ammonium sulphate [(NH₄)₂S0₄). These two techniques gave no increase in yield nor fold purification and hence were abandoned in favour of ion exchange chromatography by DEAE-Sepharose. The enzyme was then successfully purified by anion-exchange and after dialysis produced a 38% yield and three fold purification and yielded the highest specific activity of 2.27 U/mg. Neuronal nitric oxide synthase (nNOS) was a heterodimeric protein with a total molecular mass of ± 225 kDa (95 and 130 kDa monomers). The temperature and pH optima of the enzyme were 40⁰C and 6.5, respectively. The kinetic parameters (KM and Vmax) of nNOS were 70 μM and 0.332 μmol.min⁻¹, respectively. Moreover neuronal nitric oxide synthase (nNOS) was relatively stable at 40⁰C (t½ = 3 h). It was also confirmed that β-amyloid peptides inhibited nNOS when bound to the enzyme and that nNOS behaved as a catalyst in fibril formation through association-dissociation between enzyme and β-amyloid peptide. It was further shown that Aβ₁₇₋₂₈ inhibited nNOS the most with a Ki of 1.92 μM and also had the highest Stern-Volmer value (Ksv) of 0.11 μM⁻¹ indicating tight binding affinity to nNOS and easier accessibility to fluor molecules during binding. Congo red, turbidity, thioflavin-T assays and transmission electron microscopy were successfully used to detect and visualize the presence of fibrils by studying the process of fibrillogenesis. Computerized molecular modeling successfully studied protein dynamics and conformational changes of nNOS. These results correlated with resonance energy transfer (FRET) results which revealed the distance of tryptophan residues from the arginine bound at enzyme active site. Both the aforementioned techniques revealed that in the natural state of the enzyme with arginine bound at the active site, the tryptophan residues (TRP₆₂₅ and TRP₇₂₁) were positioned at the surface of the enzyme 28 Å away from the active site. When the amyloid peptide (Aβ₁₇₋₂₈) was bound to the active site, these same two amino acids moved 14 Å closer to the active site. A five residue hydrophobic fragment Aβ₁₇₋₂₁ [Leu₁₇ - Val₁₈ - Phe₁₉ - Phe₂₀ - Ala₁] within Aβ₁₇₋₂₈ was shown by computer modeling to be critical to the binding of the peptide to the active site of nNOS.
- Full Text:
- Date Issued: 2011
On the design and monitoring of photovoltaic systems for rural homes
- Authors: Williams, Nathaniel John
- Date: 2011
- Subjects: Photovoltaic cells , Dwellings -- Power supply
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10516 , http://hdl.handle.net/10948/1308 , Photovoltaic cells , Dwellings -- Power supply
- Description: It is estimated that 1.6 billion people today live without access to electricity. Most of these people live in remote rural areas in developing countries. One economic solution to this problem is the deployment of small domestic photovoltaic (PV) systems called solar home systems (SHS). In order to improve the performance and reduce the life cycle cost of these systems, accurate monitoring data of real SHSs is required. To this end, two SHSs typical of those found in the field were designed and installed, one in a rural area of the Eastern Cape of South Africa and the other in the laboratory. Monitoring systems were designed to record energy ows in the system and important environmental parameters. A novel technique was developed to correct for measurement errors occurring during the utilization of pulse width modulation charge control techniques. These errors were found to be as large as 47.6 percent. Simulations show that correction techniques produce measurement errors that are up to 20 times smaller than uncorrected values, depending upon the operating conditions. As a tool to aid in the analysis of monitoring data, a PV performance model was developed. The model, used to predict the maximum power point (MPP) power of a PV array, was able to predict MPP energy production to within 0.2 percent over the course of three days. Monitoring data from the laboratory system shows that the largest sources of energy loss are charge control, module under performance relative to manufacturer specifications and operation of the PV array away from MPP. These accounted for losses of approximately 18-27 percent, 15 percent and 8-11 percent of rated PV energy under standard test conditions, respectively. Energy consumed by loads on the systems was less than 50 percent of rated PV energy for both the remote and laboratory systems. Performance ratios (PR) for the laboratory system ranged from 0.38 to 0.49 for the three monitoring periods. The remote system produced a PR of 0.46. In both systems the PV arrays appear to have been oversized. This was due to overestimation of the energy requirements of the loads on the systems. In the laboratory system, the loads consisting of three compact fluorescent lamps and one incandescent lamp, were used to simulate a typical SHS load pro le and collectively consumed only 85 percent of their rated power. The 8 predicted load profile for the remote system proved to be signi cantly overestimated. The results of the monitoring project demonstrate the importance of acquiring an accurate estimation of the energy demand from loads on the system. Overestimations result in over-sized arrays and energy lost to charge control while under-sized systems risk damaging system batteries and load shedding. Significant under-performance of the PV module used in the laboratory system, underlines the importance of measuring module IV curves and verifying manufacturer specifications before system deployment. It was also found that signi cant PV array performance gains could be obtained by the use of maximum power point tracking charge controllers. Increased PV array performance leads to smaller arrays and reduced system cost.
- Full Text:
- Date Issued: 2011
- Authors: Williams, Nathaniel John
- Date: 2011
- Subjects: Photovoltaic cells , Dwellings -- Power supply
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10516 , http://hdl.handle.net/10948/1308 , Photovoltaic cells , Dwellings -- Power supply
- Description: It is estimated that 1.6 billion people today live without access to electricity. Most of these people live in remote rural areas in developing countries. One economic solution to this problem is the deployment of small domestic photovoltaic (PV) systems called solar home systems (SHS). In order to improve the performance and reduce the life cycle cost of these systems, accurate monitoring data of real SHSs is required. To this end, two SHSs typical of those found in the field were designed and installed, one in a rural area of the Eastern Cape of South Africa and the other in the laboratory. Monitoring systems were designed to record energy ows in the system and important environmental parameters. A novel technique was developed to correct for measurement errors occurring during the utilization of pulse width modulation charge control techniques. These errors were found to be as large as 47.6 percent. Simulations show that correction techniques produce measurement errors that are up to 20 times smaller than uncorrected values, depending upon the operating conditions. As a tool to aid in the analysis of monitoring data, a PV performance model was developed. The model, used to predict the maximum power point (MPP) power of a PV array, was able to predict MPP energy production to within 0.2 percent over the course of three days. Monitoring data from the laboratory system shows that the largest sources of energy loss are charge control, module under performance relative to manufacturer specifications and operation of the PV array away from MPP. These accounted for losses of approximately 18-27 percent, 15 percent and 8-11 percent of rated PV energy under standard test conditions, respectively. Energy consumed by loads on the systems was less than 50 percent of rated PV energy for both the remote and laboratory systems. Performance ratios (PR) for the laboratory system ranged from 0.38 to 0.49 for the three monitoring periods. The remote system produced a PR of 0.46. In both systems the PV arrays appear to have been oversized. This was due to overestimation of the energy requirements of the loads on the systems. In the laboratory system, the loads consisting of three compact fluorescent lamps and one incandescent lamp, were used to simulate a typical SHS load pro le and collectively consumed only 85 percent of their rated power. The 8 predicted load profile for the remote system proved to be signi cantly overestimated. The results of the monitoring project demonstrate the importance of acquiring an accurate estimation of the energy demand from loads on the system. Overestimations result in over-sized arrays and energy lost to charge control while under-sized systems risk damaging system batteries and load shedding. Significant under-performance of the PV module used in the laboratory system, underlines the importance of measuring module IV curves and verifying manufacturer specifications before system deployment. It was also found that signi cant PV array performance gains could be obtained by the use of maximum power point tracking charge controllers. Increased PV array performance leads to smaller arrays and reduced system cost.
- Full Text:
- Date Issued: 2011
Opportunity and connectivity : selecting land managers for involvement in a conservation corridor linking two protected areas in the Langkloof Valley, South Africa
- Authors: McClure, Alice
- Date: 2011
- Subjects: Corridors (Ecology) -- South Africa -- Eastern Cape , National parks and reserves -- South Africa , Landscape ecology -- South Africa , Wildlife conservation -- South Africa , Conservation of natural resources -- South Africa , Land use -- South Africa -- Planning
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4770 , http://hdl.handle.net/10962/d1007590 , Corridors (Ecology) -- South Africa -- Eastern Cape , National parks and reserves -- South Africa , Landscape ecology -- South Africa , Wildlife conservation -- South Africa , Conservation of natural resources -- South Africa , Land use -- South Africa -- Planning
- Description: The Eden To Addo Corridor Initiative aims to connect formally protected areas in a conservation corridor from the coastal area of the Eden District near Plettenberg Bay, Western Cape, South Africa to the Addo National Elephant Park, Eastern Cape, South Africa. The corridor will incorporate government and privately owned land, and will be an attempt to maintain ecological processes at a range of spatial and temporal scales. The Langkloof Valley lies between the Baviaanskloof World Heritage Area and the Tstitsikamma National Park; two formally protected areas that will be incorporated into the Eden To Addo Corridor. Spatial prioritization analyses allow conservation planners to select areas that should be targeted for conservation action based on a range of criteria. Historically, ecological criteria have been included mostly alone in spatial prioritization. Recently, the idea of ‘conservation opportunity’ has emerged in the field of conservation planning; the notion suggests that a range of different types of data should be included in processes to spatially prioritise for conservation. By including those data defined as ‘human’ and ‘social’ data into prioritising activities, the feasibility of conservation plans can be accounted for, but historically conservation planners have failed to do so. I conducted a literature review that demonstrated that although the importance of human and social data are acknowledged in the conservation planning literature, these data that define opportunity are rarely actually included in spatial prioritisation analyses. I then carried out a social assessment that allowed me to define the social and human context of our study area and, specifically, what stewardship instruments land managers in the Langkloof would be prepared to engage. We found that land managers were generally willing to engage, but lacked the financial capacity to adopt conservation methods. Using a subset of the social and human data that were collected in the social assessment, I trialled a new Decision Support Software to fuse those data with ecological data in a novel attempt to identify priority areas for conservation action based on ecological integrity and feasibility. We also scheduled (ranked) land managers to approach for conservation action with a focus on local champions and clusters of land managers displaying strong conservation characteristics. Two corridors were identified; a major corridor in the western region of the valley and a secondary corridor closer to the middle. The members of the Initiative have been briefed on the outcomes, which provided them an opportunity to provide feedback; it is hoped that the framework of this study can be used for planning future connections. The Eden To Addo Corridor Initiative sent out a stewardship extension officer in February 2011 to approach those land managers areas that were identified. This planning exercise is a good demonstration of how, by collaborating effectively, academic conservation planners can contribute to supporting decision making by organizations that are implementing conservation action.
- Full Text:
- Date Issued: 2011
- Authors: McClure, Alice
- Date: 2011
- Subjects: Corridors (Ecology) -- South Africa -- Eastern Cape , National parks and reserves -- South Africa , Landscape ecology -- South Africa , Wildlife conservation -- South Africa , Conservation of natural resources -- South Africa , Land use -- South Africa -- Planning
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4770 , http://hdl.handle.net/10962/d1007590 , Corridors (Ecology) -- South Africa -- Eastern Cape , National parks and reserves -- South Africa , Landscape ecology -- South Africa , Wildlife conservation -- South Africa , Conservation of natural resources -- South Africa , Land use -- South Africa -- Planning
- Description: The Eden To Addo Corridor Initiative aims to connect formally protected areas in a conservation corridor from the coastal area of the Eden District near Plettenberg Bay, Western Cape, South Africa to the Addo National Elephant Park, Eastern Cape, South Africa. The corridor will incorporate government and privately owned land, and will be an attempt to maintain ecological processes at a range of spatial and temporal scales. The Langkloof Valley lies between the Baviaanskloof World Heritage Area and the Tstitsikamma National Park; two formally protected areas that will be incorporated into the Eden To Addo Corridor. Spatial prioritization analyses allow conservation planners to select areas that should be targeted for conservation action based on a range of criteria. Historically, ecological criteria have been included mostly alone in spatial prioritization. Recently, the idea of ‘conservation opportunity’ has emerged in the field of conservation planning; the notion suggests that a range of different types of data should be included in processes to spatially prioritise for conservation. By including those data defined as ‘human’ and ‘social’ data into prioritising activities, the feasibility of conservation plans can be accounted for, but historically conservation planners have failed to do so. I conducted a literature review that demonstrated that although the importance of human and social data are acknowledged in the conservation planning literature, these data that define opportunity are rarely actually included in spatial prioritisation analyses. I then carried out a social assessment that allowed me to define the social and human context of our study area and, specifically, what stewardship instruments land managers in the Langkloof would be prepared to engage. We found that land managers were generally willing to engage, but lacked the financial capacity to adopt conservation methods. Using a subset of the social and human data that were collected in the social assessment, I trialled a new Decision Support Software to fuse those data with ecological data in a novel attempt to identify priority areas for conservation action based on ecological integrity and feasibility. We also scheduled (ranked) land managers to approach for conservation action with a focus on local champions and clusters of land managers displaying strong conservation characteristics. Two corridors were identified; a major corridor in the western region of the valley and a secondary corridor closer to the middle. The members of the Initiative have been briefed on the outcomes, which provided them an opportunity to provide feedback; it is hoped that the framework of this study can be used for planning future connections. The Eden To Addo Corridor Initiative sent out a stewardship extension officer in February 2011 to approach those land managers areas that were identified. This planning exercise is a good demonstration of how, by collaborating effectively, academic conservation planners can contribute to supporting decision making by organizations that are implementing conservation action.
- Full Text:
- Date Issued: 2011
OVR : a novel architecture for voice-based applications
- Authors: Maema, Mathe
- Date: 2011 , 2011-04-01
- Subjects: Telephone systems -- Research , User interfaces (Computer systems) -- Research , Expert systems (Computer science) , Artificial intelligence , VoiceXML (Document markup language) , Application software -- Development
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4671 , http://hdl.handle.net/10962/d1006694 , Telephone systems -- Research , User interfaces (Computer systems) -- Research , Expert systems (Computer science) , Artificial intelligence , VoiceXML (Document markup language) , Application software -- Development
- Description: Despite the inherent limitation of accessing information serially, voice applications are increasingly growing in popularity as computing technologies advance. This is a positive development, because voice communication offers a number of benefits over other forms of communication. For example, voice may be better for delivering services to users whose eyes and hands may be engaged in other activities (e.g. driving) or to semi-literate or illiterate users. This thesis proposes a knowledge based architecture for building voice applications to help reduce the limitations of serial access to information. The proposed architecture, called OVR (Ontologies, VoiceXML and Reasoners), uses a rich backend that represents knowledge via ontologies and utilises reasoning engines to reason with it, in order to generate intelligent behaviour. Ontologies were chosen over other knowledge representation formalisms because of their expressivity and executable format, and because current trends suggest a general shift towards the use of ontologies in many systems used for information storing and sharing. For the frontend, this architecture uses VoiceXML, the emerging, and de facto standard for voice automated applications. A functional prototype was built for an initial validation of the architecture. The system is a simple voice application to help locate information about service providers that offer HIV (Human Immunodeficiency Virus) testing. We called this implementation HTLS (HIV Testing Locator System). The functional prototype was implemented using a number of technologies. OWL API, a Java interface designed to facilitate manipulation of ontologies authored in OWL was used to build a customised query interface for HTLS. Pellet reasoner was used for supporting queries to the knowledge base and Drools (JBoss rule engine) was used for processing dialog rules. VXI was used as the VoiceXML browser and an experimental softswitch called iLanga as the bridge to the telephony system. (At the heart of iLanga is Asterisk, a well known PBX-in-a-box.) HTLS behaved properly under system testing, providing the sought initial validation of OVR. , LaTeX with hyperref package
- Full Text:
- Date Issued: 2011
- Authors: Maema, Mathe
- Date: 2011 , 2011-04-01
- Subjects: Telephone systems -- Research , User interfaces (Computer systems) -- Research , Expert systems (Computer science) , Artificial intelligence , VoiceXML (Document markup language) , Application software -- Development
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4671 , http://hdl.handle.net/10962/d1006694 , Telephone systems -- Research , User interfaces (Computer systems) -- Research , Expert systems (Computer science) , Artificial intelligence , VoiceXML (Document markup language) , Application software -- Development
- Description: Despite the inherent limitation of accessing information serially, voice applications are increasingly growing in popularity as computing technologies advance. This is a positive development, because voice communication offers a number of benefits over other forms of communication. For example, voice may be better for delivering services to users whose eyes and hands may be engaged in other activities (e.g. driving) or to semi-literate or illiterate users. This thesis proposes a knowledge based architecture for building voice applications to help reduce the limitations of serial access to information. The proposed architecture, called OVR (Ontologies, VoiceXML and Reasoners), uses a rich backend that represents knowledge via ontologies and utilises reasoning engines to reason with it, in order to generate intelligent behaviour. Ontologies were chosen over other knowledge representation formalisms because of their expressivity and executable format, and because current trends suggest a general shift towards the use of ontologies in many systems used for information storing and sharing. For the frontend, this architecture uses VoiceXML, the emerging, and de facto standard for voice automated applications. A functional prototype was built for an initial validation of the architecture. The system is a simple voice application to help locate information about service providers that offer HIV (Human Immunodeficiency Virus) testing. We called this implementation HTLS (HIV Testing Locator System). The functional prototype was implemented using a number of technologies. OWL API, a Java interface designed to facilitate manipulation of ontologies authored in OWL was used to build a customised query interface for HTLS. Pellet reasoner was used for supporting queries to the knowledge base and Drools (JBoss rule engine) was used for processing dialog rules. VXI was used as the VoiceXML browser and an experimental softswitch called iLanga as the bridge to the telephony system. (At the heart of iLanga is Asterisk, a well known PBX-in-a-box.) HTLS behaved properly under system testing, providing the sought initial validation of OVR. , LaTeX with hyperref package
- Full Text:
- Date Issued: 2011
Population assessments of priority plant species used by local communities in and around three Wild Coast reserves, Eastern Cape, South Africa
- Authors: Fearon, Joclyn Joe
- Date: 2011
- Subjects: Plant diversity conservation -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape -- Population viability analysis , Biodiversity -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Conservation of natural resources -- South Africa -- Eastern Cape , Human-plant relationships -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4751 , http://hdl.handle.net/10962/d1007059 , Plant diversity conservation -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape -- Population viability analysis , Biodiversity -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Conservation of natural resources -- South Africa -- Eastern Cape , Human-plant relationships -- South Africa -- Eastern Cape
- Description: The project was initiated by Eastern Cape Parks (ECP) as a request for the construction of inventories of priority species and their population levels inside three nature reserves on the Eastern Cape Wild Coast, South Africa, and to develop a strategic management plan to manage these natural resources in each reserve. Thirty key species were identified by local communities in and around Dwesa-Cwebe, Silaka and Mkambati Nature Reserves through community workshops. For forested areas belt transects of 100 m x 6 m where used. The basal circumference of key tree species within the belt transect was measured as well as the height of saplings (height < 150 m). Tree species were categorized based on densities, size class distribution (SCD) curves and values, and spatial grain. For grassland areas straight transects of 200 m long were used, along which ten 3 m x 3 m quadrates were placed at 20 m intervals. Within each grassland transect the height of herbs or tuft diameter of grasses was recorded and percentage cover estimated. Grassland species were categorized based on density, SCD curves and percentage cover. All species were placed into harvesting categories based on analysed ecological data that was collected in the field. Category 1 species were very rare or not found in the reserve and it was recommended that species be conserved and monitored. Category 2 species had low densities in the reserve indicating declining populations and was suggested that these be monitored and not harvested. Category 3 species had high densities and have potential for harvesting with strict limitations. Category 4 species were most abundant with very high densities and can be harvested within management guidelines. These categories were grouped further using social and ecological data such as harvesting risk, frequency of collection, use value and number of uses. This highlighted which species have conservation priority within each category and a decision can be made as to how intense or limited extraction should be. By incorporating GIS the distribution of each species was looked at and harvesting and non-harvesting zones established to determine where species can be extracted. Monitoring plans must consider the quantity of plant material collected, fire regimes, optimal harvesting rates and harvesting zones, and be able to pick up changes in populations. Also, it is important that the community be involved in conserving and monitoring these species. Adaptive monitoring and management must be used to steer harvesting practices in the Wild Coast reserves. This allows for the development of harvesting practices through ‘learning by doing’, and the evolution of good questions to guide monitoring decisions
- Full Text:
- Date Issued: 2011
- Authors: Fearon, Joclyn Joe
- Date: 2011
- Subjects: Plant diversity conservation -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape -- Population viability analysis , Biodiversity -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Conservation of natural resources -- South Africa -- Eastern Cape , Human-plant relationships -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4751 , http://hdl.handle.net/10962/d1007059 , Plant diversity conservation -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape -- Population viability analysis , Biodiversity -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Conservation of natural resources -- South Africa -- Eastern Cape , Human-plant relationships -- South Africa -- Eastern Cape
- Description: The project was initiated by Eastern Cape Parks (ECP) as a request for the construction of inventories of priority species and their population levels inside three nature reserves on the Eastern Cape Wild Coast, South Africa, and to develop a strategic management plan to manage these natural resources in each reserve. Thirty key species were identified by local communities in and around Dwesa-Cwebe, Silaka and Mkambati Nature Reserves through community workshops. For forested areas belt transects of 100 m x 6 m where used. The basal circumference of key tree species within the belt transect was measured as well as the height of saplings (height < 150 m). Tree species were categorized based on densities, size class distribution (SCD) curves and values, and spatial grain. For grassland areas straight transects of 200 m long were used, along which ten 3 m x 3 m quadrates were placed at 20 m intervals. Within each grassland transect the height of herbs or tuft diameter of grasses was recorded and percentage cover estimated. Grassland species were categorized based on density, SCD curves and percentage cover. All species were placed into harvesting categories based on analysed ecological data that was collected in the field. Category 1 species were very rare or not found in the reserve and it was recommended that species be conserved and monitored. Category 2 species had low densities in the reserve indicating declining populations and was suggested that these be monitored and not harvested. Category 3 species had high densities and have potential for harvesting with strict limitations. Category 4 species were most abundant with very high densities and can be harvested within management guidelines. These categories were grouped further using social and ecological data such as harvesting risk, frequency of collection, use value and number of uses. This highlighted which species have conservation priority within each category and a decision can be made as to how intense or limited extraction should be. By incorporating GIS the distribution of each species was looked at and harvesting and non-harvesting zones established to determine where species can be extracted. Monitoring plans must consider the quantity of plant material collected, fire regimes, optimal harvesting rates and harvesting zones, and be able to pick up changes in populations. Also, it is important that the community be involved in conserving and monitoring these species. Adaptive monitoring and management must be used to steer harvesting practices in the Wild Coast reserves. This allows for the development of harvesting practices through ‘learning by doing’, and the evolution of good questions to guide monitoring decisions
- Full Text:
- Date Issued: 2011
Probing the biocompatibility of biomedical interfaces using the Quartz Crystal Microbalance with Dissipation
- Authors: Cromhout, Mary
- Date: 2011
- Subjects: Biomedical materials , Nanostructured materials , Biomedical engineering , Quartz crystal microbalances , Blood proteins , Nanoparticles
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4102 , http://hdl.handle.net/10962/d1010660
- Description: The biomedical application of nanotechnology has come into the spotlight, with the promise of ‘personalised’ therapeutics that couple early diagnosis with targeted therapeutic activity. Due to the rapid growth of the biomedical applications of nanoparticles, along with the lack of understanding concerning their interactions with biomolecules, there is a pressing need for the development of standard methods directed at investigating the effect of introducing these unique particles into the human body. The central aim of this research is to establish a platform directed at assessing the biological fate of pioneering therapeutic particulate agents, such as metallophthalocyanines (MPcs) and multi-walled carbon nanotubes (FMWCNTs). In particular, we proposed, that Quartz Crystal Microbalance with Dissipation (QCM-D) technology may be employed to assess the composition of blood protein corona deposited on the therapeutic surface, and subsequently assess the biocompatibility of such particles. The proposed method of protein detection utilises the nanogram sensitivity of QCM-D technology to monitor highly specific antibody-antigen interactions. In particular those interactions which occur when probe antibodies are used to detect adsorbed blood proteins deposited on target particle-modified sensor surfaces. Protein detection analysis was directed toward identification of surface bound human serum albumin, complement factor C3c, and human plasma fibrinogen. Preliminary analysis of generic biomedical surfaces indicated human serum albumin demonstrates a higher binding affinity towards positively charged surfaces (i.e. cysteamine self-assembled monolayer), followed by hydrophobic surfaces. Detection of complement C3c, corresponded with literature, where lower levels were detected on negatively charged surfaces (i.e. mercapto undecanoic acid self-assembled monolayer), and higher levels of more hydrophobic surfaces (i.e. 11-amino undecane thiol self-assembled monolayer). Human plasma fibrinogen was observed to favour hydrophilic over hydrophobic self-assembled monolayer surfaces, which was in accordance with literature. Application of the proposed protein detection method for biocompatibility analysis of target therapeutic molecules, namely metallophthalocyanines and acid functionalised multi-walled carbon nanotubes, demonstrated a dependence on modified-surface film characteristics, such as surface charge and topography with regards to human serum albumin and human plasma fibrinogen analysis representing new insights into their potential biomolecular interactions The highest levels of detected human serum albumin and complement C3c were detected on the GePcSmix-modified surfaces. AlPcSmix-modified surfaces analysis suggested the highest levels of human plasma fibrinogen. Two methods of acid functionalisation were employed, using both nitric and sulphuric acid, and pure nitric acid. A general increase in detected human serum albumin, corresponding with an increase in functionalisation time, was observed. Complement C3c detection suggested an increase in deposited complement C3c, with increasing functionalisation time, when assessing nitric acid functionalised multi-walled carbon nanotubes, and a decrease, with increasing functionalisation time, when assessing nitric and sulphuric acid functionalised multi-walled carbon nanotubes. Analysis of human plasma fibrinogen was inconclusive, as were cytotoxicity experiments utilising MCF-7 cells in the presence of metallophthalocyanine complexes, raising simultaneously important considerations for their application and study. In the first such detailed examination of its kind it was concluded that the proposed method of protein detection, using QCM-D, allows for the rudimentary but rapid means of analysis of select protein corona deposited on particulate biomedical surfaces.
- Full Text:
- Date Issued: 2011
- Authors: Cromhout, Mary
- Date: 2011
- Subjects: Biomedical materials , Nanostructured materials , Biomedical engineering , Quartz crystal microbalances , Blood proteins , Nanoparticles
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4102 , http://hdl.handle.net/10962/d1010660
- Description: The biomedical application of nanotechnology has come into the spotlight, with the promise of ‘personalised’ therapeutics that couple early diagnosis with targeted therapeutic activity. Due to the rapid growth of the biomedical applications of nanoparticles, along with the lack of understanding concerning their interactions with biomolecules, there is a pressing need for the development of standard methods directed at investigating the effect of introducing these unique particles into the human body. The central aim of this research is to establish a platform directed at assessing the biological fate of pioneering therapeutic particulate agents, such as metallophthalocyanines (MPcs) and multi-walled carbon nanotubes (FMWCNTs). In particular, we proposed, that Quartz Crystal Microbalance with Dissipation (QCM-D) technology may be employed to assess the composition of blood protein corona deposited on the therapeutic surface, and subsequently assess the biocompatibility of such particles. The proposed method of protein detection utilises the nanogram sensitivity of QCM-D technology to monitor highly specific antibody-antigen interactions. In particular those interactions which occur when probe antibodies are used to detect adsorbed blood proteins deposited on target particle-modified sensor surfaces. Protein detection analysis was directed toward identification of surface bound human serum albumin, complement factor C3c, and human plasma fibrinogen. Preliminary analysis of generic biomedical surfaces indicated human serum albumin demonstrates a higher binding affinity towards positively charged surfaces (i.e. cysteamine self-assembled monolayer), followed by hydrophobic surfaces. Detection of complement C3c, corresponded with literature, where lower levels were detected on negatively charged surfaces (i.e. mercapto undecanoic acid self-assembled monolayer), and higher levels of more hydrophobic surfaces (i.e. 11-amino undecane thiol self-assembled monolayer). Human plasma fibrinogen was observed to favour hydrophilic over hydrophobic self-assembled monolayer surfaces, which was in accordance with literature. Application of the proposed protein detection method for biocompatibility analysis of target therapeutic molecules, namely metallophthalocyanines and acid functionalised multi-walled carbon nanotubes, demonstrated a dependence on modified-surface film characteristics, such as surface charge and topography with regards to human serum albumin and human plasma fibrinogen analysis representing new insights into their potential biomolecular interactions The highest levels of detected human serum albumin and complement C3c were detected on the GePcSmix-modified surfaces. AlPcSmix-modified surfaces analysis suggested the highest levels of human plasma fibrinogen. Two methods of acid functionalisation were employed, using both nitric and sulphuric acid, and pure nitric acid. A general increase in detected human serum albumin, corresponding with an increase in functionalisation time, was observed. Complement C3c detection suggested an increase in deposited complement C3c, with increasing functionalisation time, when assessing nitric acid functionalised multi-walled carbon nanotubes, and a decrease, with increasing functionalisation time, when assessing nitric and sulphuric acid functionalised multi-walled carbon nanotubes. Analysis of human plasma fibrinogen was inconclusive, as were cytotoxicity experiments utilising MCF-7 cells in the presence of metallophthalocyanine complexes, raising simultaneously important considerations for their application and study. In the first such detailed examination of its kind it was concluded that the proposed method of protein detection, using QCM-D, allows for the rudimentary but rapid means of analysis of select protein corona deposited on particulate biomedical surfaces.
- Full Text:
- Date Issued: 2011
Quality issues related to apparel mechandising in South Africa
- Authors: Das, Sweta
- Date: 2011
- Subjects: Fashion merchandising -- South Africa , Quality of products -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10447 , http://hdl.handle.net/10948/1585 , Fashion merchandising -- South Africa , Quality of products -- South Africa
- Description: The objectives of this study are to develop an understanding of the quality related issues and gaps relevant to apparel merchandising within the South African context, with a specific focus on Fabric Objective Measurement, a relatively new technology and one which could fruitfully be applied in South Africa, but which appears to have been largely neglected to date. Fabric Objective Measurement (FOM) represents a new generation of instrumentally measured parameters which provide a more complete picture of fabric quality, tailorability and clothing performance. The two main FOM systems, FAST and Kawabata, are discussed under FOM in terms of their applications, control charts and their worldwide utilisation. A literature review has been done on the global clothing sector as well as South African clothing industry. The research involved a questionnaire survey of, and interviews with major clothing and retail companies in South Africa with a specific focus on the gap in the South African clothing industry in terms of FOM and other quality related issues. The data and information so captured are presented graphically, statistically analyzed and interpreted, to arrive at the main conclusions and recommendations. Trubok, Newcastle, the only company in South Africa utilizing FOM, was visited in order to obtain hands on experience with the FAST system as operated in a mill. Two different fabrics were tested and the control charts obtained were interpreted. According to the analysis of the questionnaires and interviews, various conclusions could be drawn. When benchmarking a product, quality emerged as the first criterion, 100 percent retailers and manufacturers agreed to this. Most respondents stated that their fabric and garment testing is mostly done in-house while other respondents stated that their fabric and garment testing is mostly done by their respective suppliers. The most commonly used outside laboratories are SGS and ITS. Merchandising and quality complement each other and with proper quality assessment the merchandising workflow becomes smooth, easy and timely delivery of products. All of the respondents (100 percent) supported this fact. Retailers and manufacturers agreed that quality and merchandising are related to each other and hence helping those in achieving product benchmarking (statistically significant at 95 percent confidence level). Retailers and manufacturers conduct fabric and garment tests on a regular/routine basis and mostly use knitted and woven fabrics in garment making. In addition to the above, the worldwide manufacturers and suppliers of the FAST and Kawabata systems were approached to obtain data and information about the number of such systems sold worldwide and their fields of application. This information was considered important in promoting FOM in South Africa. Only one manufacturer is presently using FAST for quality control purposes. Of the manufacturers and retailers covered, most of them were either unfamiliar or totally unaware of FOM and its application. This indicates that there is considerable scope for introducing this highly advanced technology into the textile and clothing manufacturing and retail pipeline in South Africa. Most of the manufacturers and retailers (50 percent) intend to introduce certain new tests in future. The tests that they are planning to introduce in future may include FAST, which is fairly simple, reliable and productive, as well as enhancing the quality of the garment. If used, FOM can improve the quality and competitiveness on the international level which is currently lacking in the South African clothing sector.
- Full Text:
- Date Issued: 2011
- Authors: Das, Sweta
- Date: 2011
- Subjects: Fashion merchandising -- South Africa , Quality of products -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10447 , http://hdl.handle.net/10948/1585 , Fashion merchandising -- South Africa , Quality of products -- South Africa
- Description: The objectives of this study are to develop an understanding of the quality related issues and gaps relevant to apparel merchandising within the South African context, with a specific focus on Fabric Objective Measurement, a relatively new technology and one which could fruitfully be applied in South Africa, but which appears to have been largely neglected to date. Fabric Objective Measurement (FOM) represents a new generation of instrumentally measured parameters which provide a more complete picture of fabric quality, tailorability and clothing performance. The two main FOM systems, FAST and Kawabata, are discussed under FOM in terms of their applications, control charts and their worldwide utilisation. A literature review has been done on the global clothing sector as well as South African clothing industry. The research involved a questionnaire survey of, and interviews with major clothing and retail companies in South Africa with a specific focus on the gap in the South African clothing industry in terms of FOM and other quality related issues. The data and information so captured are presented graphically, statistically analyzed and interpreted, to arrive at the main conclusions and recommendations. Trubok, Newcastle, the only company in South Africa utilizing FOM, was visited in order to obtain hands on experience with the FAST system as operated in a mill. Two different fabrics were tested and the control charts obtained were interpreted. According to the analysis of the questionnaires and interviews, various conclusions could be drawn. When benchmarking a product, quality emerged as the first criterion, 100 percent retailers and manufacturers agreed to this. Most respondents stated that their fabric and garment testing is mostly done in-house while other respondents stated that their fabric and garment testing is mostly done by their respective suppliers. The most commonly used outside laboratories are SGS and ITS. Merchandising and quality complement each other and with proper quality assessment the merchandising workflow becomes smooth, easy and timely delivery of products. All of the respondents (100 percent) supported this fact. Retailers and manufacturers agreed that quality and merchandising are related to each other and hence helping those in achieving product benchmarking (statistically significant at 95 percent confidence level). Retailers and manufacturers conduct fabric and garment tests on a regular/routine basis and mostly use knitted and woven fabrics in garment making. In addition to the above, the worldwide manufacturers and suppliers of the FAST and Kawabata systems were approached to obtain data and information about the number of such systems sold worldwide and their fields of application. This information was considered important in promoting FOM in South Africa. Only one manufacturer is presently using FAST for quality control purposes. Of the manufacturers and retailers covered, most of them were either unfamiliar or totally unaware of FOM and its application. This indicates that there is considerable scope for introducing this highly advanced technology into the textile and clothing manufacturing and retail pipeline in South Africa. Most of the manufacturers and retailers (50 percent) intend to introduce certain new tests in future. The tests that they are planning to introduce in future may include FAST, which is fairly simple, reliable and productive, as well as enhancing the quality of the garment. If used, FOM can improve the quality and competitiveness on the international level which is currently lacking in the South African clothing sector.
- Full Text:
- Date Issued: 2011
Quantifying crop damage by Grey crowned crane balearica regulorum regulorum and evaluating changes in crane distribution in the North Eastern Cape, South Africa
- Authors: Van Niekerk, Mark Harry
- Date: 2011
- Subjects: Cranes (Birds) -- South Africa -- Eastern Cape , Cranes (Birds) -- Geographical distribution -- South Africa -- Eastern Cape , Cranes (Birds) -- Behavior -- South Africa -- Eastern Cape , Cranes (Birds) -- Food -- South Africa -- Eastern Cape , Corn -- Effect of grazing on -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5749 , http://hdl.handle.net/10962/d1005436 , Cranes (Birds) -- South Africa -- Eastern Cape , Cranes (Birds) -- Geographical distribution -- South Africa -- Eastern Cape , Cranes (Birds) -- Behavior -- South Africa -- Eastern Cape , Cranes (Birds) -- Food -- South Africa -- Eastern Cape , Corn -- Effect of grazing on -- South Africa -- Eastern Cape
- Description: Complaints of crop damage by cranes on planted maize in the North Eastern Cape, South Africa, have been increasing since the mid-1990‘s, and in some instances severe losses have been reported. Crop damage by the Grey Crowned Crane Balearica regulorum regulorum near the town of Maclear (31º04´S 28º22´E), has been quantified over two growing seasons, and assessed relative to losses caused by foraging Cape Crows Corvus capensis and other feeding damage assumed to be caused by insects. Twelve fields were selected based on previous patterns of crop depredation. Maize seed in seven of the fields was treated with the chemical ‗Gaucho‘ and five fields were planted with untreated maize. In order to determine the source of losses, twenty quadrats (4 m x 4 m) randomly distributed within each field were visited on average every second day, for a period of up to twenty eight days. Results indicate that seed treatments do act as a deterrent to feeding by both cranes and crows, however crane damage is generally insignificant compared to other sources of damage. My study also reviewed past sightings data of the Grey Crowned Crane in an effort to determine if the conversion of former grassland to plantations in this region may have increased foraging activity in maize fields. The data did not allow for clear-cut conclusions regarding changes in distribution or population trends. Conclusions provide direct input into the management of agricultural areas by enabling landowners to take steps to mitigate crop damage. These mitigation measures may either involve the application of seed treatments, or the planting of low risk crops in high risk areas. Future studies should consider the ppossible detrimental effects of chemical seed treatments on crane biology.
- Full Text:
- Date Issued: 2011
- Authors: Van Niekerk, Mark Harry
- Date: 2011
- Subjects: Cranes (Birds) -- South Africa -- Eastern Cape , Cranes (Birds) -- Geographical distribution -- South Africa -- Eastern Cape , Cranes (Birds) -- Behavior -- South Africa -- Eastern Cape , Cranes (Birds) -- Food -- South Africa -- Eastern Cape , Corn -- Effect of grazing on -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5749 , http://hdl.handle.net/10962/d1005436 , Cranes (Birds) -- South Africa -- Eastern Cape , Cranes (Birds) -- Geographical distribution -- South Africa -- Eastern Cape , Cranes (Birds) -- Behavior -- South Africa -- Eastern Cape , Cranes (Birds) -- Food -- South Africa -- Eastern Cape , Corn -- Effect of grazing on -- South Africa -- Eastern Cape
- Description: Complaints of crop damage by cranes on planted maize in the North Eastern Cape, South Africa, have been increasing since the mid-1990‘s, and in some instances severe losses have been reported. Crop damage by the Grey Crowned Crane Balearica regulorum regulorum near the town of Maclear (31º04´S 28º22´E), has been quantified over two growing seasons, and assessed relative to losses caused by foraging Cape Crows Corvus capensis and other feeding damage assumed to be caused by insects. Twelve fields were selected based on previous patterns of crop depredation. Maize seed in seven of the fields was treated with the chemical ‗Gaucho‘ and five fields were planted with untreated maize. In order to determine the source of losses, twenty quadrats (4 m x 4 m) randomly distributed within each field were visited on average every second day, for a period of up to twenty eight days. Results indicate that seed treatments do act as a deterrent to feeding by both cranes and crows, however crane damage is generally insignificant compared to other sources of damage. My study also reviewed past sightings data of the Grey Crowned Crane in an effort to determine if the conversion of former grassland to plantations in this region may have increased foraging activity in maize fields. The data did not allow for clear-cut conclusions regarding changes in distribution or population trends. Conclusions provide direct input into the management of agricultural areas by enabling landowners to take steps to mitigate crop damage. These mitigation measures may either involve the application of seed treatments, or the planting of low risk crops in high risk areas. Future studies should consider the ppossible detrimental effects of chemical seed treatments on crane biology.
- Full Text:
- Date Issued: 2011