Graphene quantum dots functionalized with 4-amino-2, 2, 6, 6-tetramethylpiperidine-N-oxide as fluorescence “turn-on” nanosensors
- Achadu, Ojodomo J, Britton, Jonathan, Nyokong, Tebello
- Authors: Achadu, Ojodomo J , Britton, Jonathan , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239854 , vital:50773 , xlink:href="https://doi.org/10.1007/s10895-016-1916-y"
- Description: In this study, we report on the fabrication of simple and rapid graphene quantum dots (GQDs)-based fluorescence “turn-ON” nanoprobes for sensitive and selective detection of ascorbic acid (AA). Pristine GQDs and S and N co-doped-GQDs (SN-GQDs) were functionalized with 4-amino-2,2,6,6-tetramethylpiperidine-N-oxide (4-amino-TEMPO, a nitroxide free radical). The nitroxide free radicals efficiently quenched the fluorescence of the GQDs and upon interaction of the nanoconjugates with ascorbic acid, the quenched fluorescence was restored. The linear ranges recorded were 0.5–5.7 μM and 0.1–5.5 μM for GQDs-4-amino-TEMPO and SN-GQDs-4amino-TEMPO nanoprobes, respectively. Limits of detection were found to be 60 nM and 84 nM for SN-GQDS-4-amino-TEMPO and GQDs-4-amino-TEMPO for AA detection, respectively. This novel fluorescence “turn-ON” technique showed to be highly rapid and selective towards AA detection.
- Full Text:
- Date Issued: 2016
- Authors: Achadu, Ojodomo J , Britton, Jonathan , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239854 , vital:50773 , xlink:href="https://doi.org/10.1007/s10895-016-1916-y"
- Description: In this study, we report on the fabrication of simple and rapid graphene quantum dots (GQDs)-based fluorescence “turn-ON” nanoprobes for sensitive and selective detection of ascorbic acid (AA). Pristine GQDs and S and N co-doped-GQDs (SN-GQDs) were functionalized with 4-amino-2,2,6,6-tetramethylpiperidine-N-oxide (4-amino-TEMPO, a nitroxide free radical). The nitroxide free radicals efficiently quenched the fluorescence of the GQDs and upon interaction of the nanoconjugates with ascorbic acid, the quenched fluorescence was restored. The linear ranges recorded were 0.5–5.7 μM and 0.1–5.5 μM for GQDs-4-amino-TEMPO and SN-GQDs-4amino-TEMPO nanoprobes, respectively. Limits of detection were found to be 60 nM and 84 nM for SN-GQDS-4-amino-TEMPO and GQDs-4-amino-TEMPO for AA detection, respectively. This novel fluorescence “turn-ON” technique showed to be highly rapid and selective towards AA detection.
- Full Text:
- Date Issued: 2016
HealthMessenger: an e-Health service to support ICT deployments in poor areas
- Gremu, Chikumbutso, Terzoli, Alfredo, Tsietsi, Mosiuoa
- Authors: Gremu, Chikumbutso , Terzoli, Alfredo , Tsietsi, Mosiuoa
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430609 , vital:72703 , 10.1109/ISTAFRICA.2016.7530632
- Description: Development and implementation of appropriate e-services as well as revenue generation are key to deploying and sustaining ICT installa-tions in poor areas in developing countries. The area of e-Health is a promising area for e-Services that are important to populations in poor areas and health service organisations that are already spending mon-ey on different health initiatives in these areas. This paper discusses an e-Health service that facilitates dissemination of health information to people living in poor areas and that is subsequently used to generate revenue to support deployment and development of ICT in the areas. The tool was developed within the context of the Siyakhula Living Lab (SLL), a multi-stakeholder operation that promotes ICT for Development in the Eastern Cape Province of South Africa. Creation of health con-tent for the e-health service and its subsequent consumption happen in two different environments from a technological and social point of view. To enable this to happen, the e-service comprises two component applications that run in a peer-to-peer fashion. The component that is used to disseminate content for end-user consumption is called the HealthMessenger. The HealthMessenger is hosted on an environment called TeleWeaver, an application integration platform developed within the SLL to host software applications targeting people living in poor ar-eas. The platform is customised to support services with a revenue generation component.
- Full Text:
- Date Issued: 2016
- Authors: Gremu, Chikumbutso , Terzoli, Alfredo , Tsietsi, Mosiuoa
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430609 , vital:72703 , 10.1109/ISTAFRICA.2016.7530632
- Description: Development and implementation of appropriate e-services as well as revenue generation are key to deploying and sustaining ICT installa-tions in poor areas in developing countries. The area of e-Health is a promising area for e-Services that are important to populations in poor areas and health service organisations that are already spending mon-ey on different health initiatives in these areas. This paper discusses an e-Health service that facilitates dissemination of health information to people living in poor areas and that is subsequently used to generate revenue to support deployment and development of ICT in the areas. The tool was developed within the context of the Siyakhula Living Lab (SLL), a multi-stakeholder operation that promotes ICT for Development in the Eastern Cape Province of South Africa. Creation of health con-tent for the e-health service and its subsequent consumption happen in two different environments from a technological and social point of view. To enable this to happen, the e-service comprises two component applications that run in a peer-to-peer fashion. The component that is used to disseminate content for end-user consumption is called the HealthMessenger. The HealthMessenger is hosted on an environment called TeleWeaver, an application integration platform developed within the SLL to host software applications targeting people living in poor ar-eas. The platform is customised to support services with a revenue generation component.
- Full Text:
- Date Issued: 2016
Heterogeneity in virulence relationships between Cryptophlebia leucotreta granulovirus isolates and geographically distinct host populations: Lessons from codling moth resistance to CpGV-M
- Opoku-Debrah, John K, Hill, Martin P, Knox, Caroline M, Moore, Sean D
- Authors: Opoku-Debrah, John K , Hill, Martin P , Knox, Caroline M , Moore, Sean D
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/417998 , vital:71500 , xlink:href="https://doi.org/10.1007/s10526-016-9728-1"
- Description: In South Africa, the baculovirus Cryptophlebia leucotreta granulovirus (CrleGV) is used to control the citrus pest Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae). However, the risk associated with continuous application of a single active ingredient is resistance. In order to manage resistance should it occur in field populations of T. leucotreta in South Africa, five new CrleGV genotypes from geographically distinct insect populations which were shown to exhibit some degree of phenotypic variation were recovered and genetically characterized. In droplet bioassays using seven CrleGV isolates against five T. leucotreta populations, some isolates were found to show higher virulence to some host populations than others. There were marked differences in the LD50 values of isolates and the number of occlusion bodies required per larva ranged between 0.79 and 3.12. The significance of these findings with respect to the application of CrleGV biopesticides and the management of resistance is discussed.
- Full Text:
- Date Issued: 2016
- Authors: Opoku-Debrah, John K , Hill, Martin P , Knox, Caroline M , Moore, Sean D
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/417998 , vital:71500 , xlink:href="https://doi.org/10.1007/s10526-016-9728-1"
- Description: In South Africa, the baculovirus Cryptophlebia leucotreta granulovirus (CrleGV) is used to control the citrus pest Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae). However, the risk associated with continuous application of a single active ingredient is resistance. In order to manage resistance should it occur in field populations of T. leucotreta in South Africa, five new CrleGV genotypes from geographically distinct insect populations which were shown to exhibit some degree of phenotypic variation were recovered and genetically characterized. In droplet bioassays using seven CrleGV isolates against five T. leucotreta populations, some isolates were found to show higher virulence to some host populations than others. There were marked differences in the LD50 values of isolates and the number of occlusion bodies required per larva ranged between 0.79 and 3.12. The significance of these findings with respect to the application of CrleGV biopesticides and the management of resistance is discussed.
- Full Text:
- Date Issued: 2016
Impacts of HIV/AIDS on food consumption and wild food use in rural South Africa
- Ncube, Keitometsi, Shackleton, Charlie M, Swallow, Brent M, Dassanayake, Wijaya
- Authors: Ncube, Keitometsi , Shackleton, Charlie M , Swallow, Brent M , Dassanayake, Wijaya
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180412 , vital:43385 , xlink:href="https://doi.org/10.1007/s12571-016-0624-4"
- Description: HIV/AIDS can affect household food consumption in many ways, including through reductions in availability and quality of labour, reductions in earned income, and increased expenditure on medications. In rural South Africa, these negative effects can be buffered by social safety net programs provided by government and collection of wild foods. Despite some acknowledgement of the potential safety net role of wild foods, however, their contribution relative to other food sources in the context of HIV/AIDS remains underexplored. Here we report empirical findings from two rural communities in the Eastern Cape province of South Africa. Qualitative and quantitative methods were used to characterise food sources, intake and calories from 68 HIV/AIDS afflicted households and 87 non-afflicted households every quarter over 12 months. Results show that diets were moderately well-balanced though limited in variety, with cereal items contributing 52 % to total calorie intake. The bulk of food consumed by households was purchased, with supplementation from own production, collected wild vegetables and collected wild fruits. Up to 20 % of respondents from both HIV/ AIDS afflicted and non-afflicted households had insufficient daily caloric intake. Multivariate analyses show that, all else equal, individuals living in households afflicted by HIV/AIDS consumed fewer calories, had less diverse diets, and were more dependent on wild foods than those living in non-afflicted households. Given the detrimental effects of HIV/AIDS on income and home production, wild foods represent a free and readily available food source for vulnerable households.
- Full Text:
- Date Issued: 2016
- Authors: Ncube, Keitometsi , Shackleton, Charlie M , Swallow, Brent M , Dassanayake, Wijaya
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180412 , vital:43385 , xlink:href="https://doi.org/10.1007/s12571-016-0624-4"
- Description: HIV/AIDS can affect household food consumption in many ways, including through reductions in availability and quality of labour, reductions in earned income, and increased expenditure on medications. In rural South Africa, these negative effects can be buffered by social safety net programs provided by government and collection of wild foods. Despite some acknowledgement of the potential safety net role of wild foods, however, their contribution relative to other food sources in the context of HIV/AIDS remains underexplored. Here we report empirical findings from two rural communities in the Eastern Cape province of South Africa. Qualitative and quantitative methods were used to characterise food sources, intake and calories from 68 HIV/AIDS afflicted households and 87 non-afflicted households every quarter over 12 months. Results show that diets were moderately well-balanced though limited in variety, with cereal items contributing 52 % to total calorie intake. The bulk of food consumed by households was purchased, with supplementation from own production, collected wild vegetables and collected wild fruits. Up to 20 % of respondents from both HIV/ AIDS afflicted and non-afflicted households had insufficient daily caloric intake. Multivariate analyses show that, all else equal, individuals living in households afflicted by HIV/AIDS consumed fewer calories, had less diverse diets, and were more dependent on wild foods than those living in non-afflicted households. Given the detrimental effects of HIV/AIDS on income and home production, wild foods represent a free and readily available food source for vulnerable households.
- Full Text:
- Date Issued: 2016
Improvement of nonlinear optical properties of phthalocyanine bearing diethyleneglycole chains
- Britton, Jonathan, Martynov, Alexander G, Oluwole, David O, Gorbunova, Yulia G, Tsivadze, Yulia G, Nyokong, Tebello
- Authors: Britton, Jonathan , Martynov, Alexander G , Oluwole, David O , Gorbunova, Yulia G , Tsivadze, Yulia G , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239812 , vital:50769 , xlink:href="https://doi.org/10.1142/S1088424616501042"
- Description: This paper reports the successful synthesis of the low symmetry phthalocyanines: metal-free 2,3-bis[2′-(2′′-hydroxyethoxy)ethoxy]-9,10,16,17,23,24-hexa-nn-butoxyphthalocyanine 1H22 and its zinc complex 1Zn along with their nonlinear optical (NLO) behavior in solution and in thin films. 1H NMR investigations evidenced of higher dissymmetry of electronic density in 1H22 in comparison with 1Zn. This dissymmetry is responsible for unusually higher values of Im[χ(3)χ(3)]/αα, βeffβeff, and γγ for 1H22in contrast to 1Zn, where the notable effect of heavy-metal enhancement of ISC was expected. Both compounds showed Im[χ(3)χ(3)]/αα values of the order of 10−11−11 in chloroform which are higher in comparison to the symmetrical octabutoxyphthalocyanine H2[(BuO)8Pc]. NLO properties of 1H22 were improved via its incorporation into polycarbonate polymeric matrix together with CdSe@CdS-TOPO quantum dots. In such composite the value of Im[χ(3)χ(3)]/αα was almost three times higher in comparison with 1H22 solution in chloroform. The obtained composites are expected to be perspective components of optical materials, capable of protection against strong light irradiation
- Full Text:
- Date Issued: 2016
- Authors: Britton, Jonathan , Martynov, Alexander G , Oluwole, David O , Gorbunova, Yulia G , Tsivadze, Yulia G , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239812 , vital:50769 , xlink:href="https://doi.org/10.1142/S1088424616501042"
- Description: This paper reports the successful synthesis of the low symmetry phthalocyanines: metal-free 2,3-bis[2′-(2′′-hydroxyethoxy)ethoxy]-9,10,16,17,23,24-hexa-nn-butoxyphthalocyanine 1H22 and its zinc complex 1Zn along with their nonlinear optical (NLO) behavior in solution and in thin films. 1H NMR investigations evidenced of higher dissymmetry of electronic density in 1H22 in comparison with 1Zn. This dissymmetry is responsible for unusually higher values of Im[χ(3)χ(3)]/αα, βeffβeff, and γγ for 1H22in contrast to 1Zn, where the notable effect of heavy-metal enhancement of ISC was expected. Both compounds showed Im[χ(3)χ(3)]/αα values of the order of 10−11−11 in chloroform which are higher in comparison to the symmetrical octabutoxyphthalocyanine H2[(BuO)8Pc]. NLO properties of 1H22 were improved via its incorporation into polycarbonate polymeric matrix together with CdSe@CdS-TOPO quantum dots. In such composite the value of Im[χ(3)χ(3)]/αα was almost three times higher in comparison with 1H22 solution in chloroform. The obtained composites are expected to be perspective components of optical materials, capable of protection against strong light irradiation
- Full Text:
- Date Issued: 2016
Improving Fidelity in Internet Simulation through Packet Injection
- Koorn, Craig, Irwin, Barry V W, Herbert, Alan
- Authors: Koorn, Craig , Irwin, Barry V W , Herbert, Alan
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/427786 , vital:72462 , https://www.researchgate.net/profile/Barry-Ir-win/publication/327622877_Improving_Fidelity_in_Internet_Simulation_through_Packet_Injection/links/5b9a1a47458515310583fd8a/Improving-Fidelity-in-Internet-Simulation-through-Packet-Injection.pdf
- Description: This paper describes the of extension implemented to the NKM Internet simulation system, which allows for the improved of injection of packet traffic at arbitrary nodes, and the replay of previously recorded streams. The latter function allows for the relatively easy implementation of Internet Background Radiation (IBR) within the simulated portion of the Internet. This feature thereby enhances the degree of realism of the simulation, and allows for certain pre-determined traffic, such as scanning activity, to be injected and observed by client systems connected to the simulator.
- Full Text:
- Date Issued: 2016
- Authors: Koorn, Craig , Irwin, Barry V W , Herbert, Alan
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/427786 , vital:72462 , https://www.researchgate.net/profile/Barry-Ir-win/publication/327622877_Improving_Fidelity_in_Internet_Simulation_through_Packet_Injection/links/5b9a1a47458515310583fd8a/Improving-Fidelity-in-Internet-Simulation-through-Packet-Injection.pdf
- Description: This paper describes the of extension implemented to the NKM Internet simulation system, which allows for the improved of injection of packet traffic at arbitrary nodes, and the replay of previously recorded streams. The latter function allows for the relatively easy implementation of Internet Background Radiation (IBR) within the simulated portion of the Internet. This feature thereby enhances the degree of realism of the simulation, and allows for certain pre-determined traffic, such as scanning activity, to be injected and observed by client systems connected to the simulator.
- Full Text:
- Date Issued: 2016
In search of the African voice in higher education: the language question
- Authors: Kaschula, Russell H
- Date: 2016
- Subjects: African languages -- Study and teaching (Higher) -- South Africa , Educational change -- South Africa , Education, Higher -- South Africa , Multiligualism , Language and languages -- Study and teaching
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59274 , vital:27539 , http://dx.doi.org/10.5842/49-0-658
- Description: This article seeks to understand what South African universities are doing by making use of language as a tool or as an enabling voice towards Africanisation and transformation with particular reference to Rhodes University, which serves as a case study. Although many universities now have language policies in place and are part of an enabling policy environment, when it comes to using language as part of transformation and asserting an African voice, there are still policy implementation challenges. It is argued in this article that implementation of policy, including university language policies, is now a key indicator for two levels of transformation; namely the more superficially visible or visual representation transformation, as well as deeper curriculum transformation through appropriate language usage. It is the latter form of transformation that largely eludes the contemporary South African university, whether these are historically black universities (HBUs) or historically white universities (HWUs). With the exception of a few best practices that are highlighted in this article, it is argued that transformation of the curriculum remains a long-term process, in the same way that language policy implementation is an ongoing process and requires commitment at all levels of university managerial and academic culture. The African voice in higher education remains an elusive one; though it is gaining ground, as evidenced by the recent removal of the Cecil John Rhodes Statue at the University of Cape Town. Furthermore, there is evidence of selected ongoing curriculum and pedagogic transformation, as presented in this article.
- Full Text:
- Date Issued: 2016
- Authors: Kaschula, Russell H
- Date: 2016
- Subjects: African languages -- Study and teaching (Higher) -- South Africa , Educational change -- South Africa , Education, Higher -- South Africa , Multiligualism , Language and languages -- Study and teaching
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59274 , vital:27539 , http://dx.doi.org/10.5842/49-0-658
- Description: This article seeks to understand what South African universities are doing by making use of language as a tool or as an enabling voice towards Africanisation and transformation with particular reference to Rhodes University, which serves as a case study. Although many universities now have language policies in place and are part of an enabling policy environment, when it comes to using language as part of transformation and asserting an African voice, there are still policy implementation challenges. It is argued in this article that implementation of policy, including university language policies, is now a key indicator for two levels of transformation; namely the more superficially visible or visual representation transformation, as well as deeper curriculum transformation through appropriate language usage. It is the latter form of transformation that largely eludes the contemporary South African university, whether these are historically black universities (HBUs) or historically white universities (HWUs). With the exception of a few best practices that are highlighted in this article, it is argued that transformation of the curriculum remains a long-term process, in the same way that language policy implementation is an ongoing process and requires commitment at all levels of university managerial and academic culture. The African voice in higher education remains an elusive one; though it is gaining ground, as evidenced by the recent removal of the Cecil John Rhodes Statue at the University of Cape Town. Furthermore, there is evidence of selected ongoing curriculum and pedagogic transformation, as presented in this article.
- Full Text:
- Date Issued: 2016
Incorporation of environmental issues in South Africa’s municipal Integrated Development Plans
- Ruwanza, Sheunesu, Shackleton, Charlie M
- Authors: Ruwanza, Sheunesu , Shackleton, Charlie M
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180481 , vital:43393 , xlink:href="https://doi.org/10.1080/13504509.2015.1062161"
- Description: The transition to full democracy in South Africa in 1994 saw local government becoming the focal point for dealing with socio-economic development needs of communities. The Integrated Development Plan (IDP) has been used as the tool for guiding local development objectives, balanced against environmental demands within a sustainable development paradigm. Here we examine the extent to which this is being achieved through an analysis of IDPs from 35 different municipalities at three scales. We test the hypothesis that the metropolitan municipalities are better at mainstreaming environmental issues into their IDPs than local and district municipalities. Results indicate that mainstreaming environmental issues in IDPs is still low. The hypothesis that metropoles are better at mainstreaming environmental issues than district and local municipalities was not accepted since there were no significant differences between municipalities. There was low relative budget allocations and inclusion of vision and mission statements that mainstream environmental issues in all municipalities. For mainstreaming of environmental issues to be effective in IDPs, both proactive approaches and multi-faceted bottom-up and top-down approaches are suggested.
- Full Text:
- Date Issued: 2016
- Authors: Ruwanza, Sheunesu , Shackleton, Charlie M
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180481 , vital:43393 , xlink:href="https://doi.org/10.1080/13504509.2015.1062161"
- Description: The transition to full democracy in South Africa in 1994 saw local government becoming the focal point for dealing with socio-economic development needs of communities. The Integrated Development Plan (IDP) has been used as the tool for guiding local development objectives, balanced against environmental demands within a sustainable development paradigm. Here we examine the extent to which this is being achieved through an analysis of IDPs from 35 different municipalities at three scales. We test the hypothesis that the metropolitan municipalities are better at mainstreaming environmental issues into their IDPs than local and district municipalities. Results indicate that mainstreaming environmental issues in IDPs is still low. The hypothesis that metropoles are better at mainstreaming environmental issues than district and local municipalities was not accepted since there were no significant differences between municipalities. There was low relative budget allocations and inclusion of vision and mission statements that mainstream environmental issues in all municipalities. For mainstreaming of environmental issues to be effective in IDPs, both proactive approaches and multi-faceted bottom-up and top-down approaches are suggested.
- Full Text:
- Date Issued: 2016
Infecting the city: site-situational performance and ambulatory hermeneutics
- Authors: Simbao, Ruth K
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/146156 , vital:38500 , DOI: 10.1080/09528822.2016.1266776
- Description: This article proposes the term ‘site-situational’ art or performance as a meaningful shift beyond ‘site-specificity’ and as a way to develop forward-moving and relational understandings of place. While place falls prey to Western, modernist stereotypes of closed, territorial geographic systems, site-situational readings, radical forms of ‘recognition’ and ambulatory hermeneutics enable an understanding of place as a wandering signifier, a trickster figure, and an in-the-moment conversation between environments and living beings. Through an analysis of the 2009 Infecting the City performing arts festival in South Africa, the article links site-situational performance to situational understandings of identification in the context of migration and xenophobia. It connects the participatory creative resistance aspired to by the Situationists that transforms situations rather than just recognises them, to the potential mutuality that can be experienced when one recognises oneself in the face of a ‘foreigner’ as well as the potential culpability that accompanies pro-active recognition-on-the-run.
- Full Text:
- Date Issued: 2016
- Authors: Simbao, Ruth K
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/146156 , vital:38500 , DOI: 10.1080/09528822.2016.1266776
- Description: This article proposes the term ‘site-situational’ art or performance as a meaningful shift beyond ‘site-specificity’ and as a way to develop forward-moving and relational understandings of place. While place falls prey to Western, modernist stereotypes of closed, territorial geographic systems, site-situational readings, radical forms of ‘recognition’ and ambulatory hermeneutics enable an understanding of place as a wandering signifier, a trickster figure, and an in-the-moment conversation between environments and living beings. Through an analysis of the 2009 Infecting the City performing arts festival in South Africa, the article links site-situational performance to situational understandings of identification in the context of migration and xenophobia. It connects the participatory creative resistance aspired to by the Situationists that transforms situations rather than just recognises them, to the potential mutuality that can be experienced when one recognises oneself in the face of a ‘foreigner’ as well as the potential culpability that accompanies pro-active recognition-on-the-run.
- Full Text:
- Date Issued: 2016
Interaction of graphene quantum dots with 4-acetamido-2, 2, 6, 6-tetramethylpiperidine-oxyl free radicals
- Achadu, Ojodomo John, Nyokong, Tebello
- Authors: Achadu, Ojodomo John , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189031 , vital:44810 , xlink:href="https://doi.org/10.1007/s10895-015-1712-0"
- Description: We report on the interaction of graphene quantum dots (GQDs) with 4-acetamido-2,2,6,6-tetramethylpiperidineoxyl (4-acetamido-TEMPO) free radicals. The GQDs were N and S, N doped. The fluorescence quantum yields were higher for the doped GQDs compared to the undoped. The interaction is assessed by spectrofluorimetric, steady state/time resolved fluorescence and electron paramagnetic resonance (EPR) techniques. Fluorescence quenching was observed upon the addition of 4-acetamido-TEMPO to the GQDs. Photoinduced electron transfer (PET) mechanism was suggested as the plausible mechanism involved in the fluorescence quenching in which 4-acetamido-TEMPO acted as the electron acceptor.
- Full Text:
- Date Issued: 2016
- Authors: Achadu, Ojodomo John , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189031 , vital:44810 , xlink:href="https://doi.org/10.1007/s10895-015-1712-0"
- Description: We report on the interaction of graphene quantum dots (GQDs) with 4-acetamido-2,2,6,6-tetramethylpiperidineoxyl (4-acetamido-TEMPO) free radicals. The GQDs were N and S, N doped. The fluorescence quantum yields were higher for the doped GQDs compared to the undoped. The interaction is assessed by spectrofluorimetric, steady state/time resolved fluorescence and electron paramagnetic resonance (EPR) techniques. Fluorescence quenching was observed upon the addition of 4-acetamido-TEMPO to the GQDs. Photoinduced electron transfer (PET) mechanism was suggested as the plausible mechanism involved in the fluorescence quenching in which 4-acetamido-TEMPO acted as the electron acceptor.
- Full Text:
- Date Issued: 2016
Interpreting press coverage of South Africa’s post-apartheid “obesity epidemic”:
- Vincent, Louise, Malan, Chantelle
- Authors: Vincent, Louise , Malan, Chantelle
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141866 , vital:38011 , DOI: 10.1080/21604851.2015.1015397
- Description: This study examines news reporting on South Africa’s alleged “obesity” epidemic between 1997 and 2012. Results indicate that fatness is equated with disease, crisis, and dysfunction and the fat black body is singled out for particular attention as a social problem. News reporting on fat in South Africa uncritically takes up the views of sources with commercial interests who are presented as “experts” on fat. Their interpretations of the fat black body as a social problem are influenced by the imperative of new markets for products that are to be found principally in the ranks of the post-apartheid black middle class.
- Full Text:
- Date Issued: 2016
- Authors: Vincent, Louise , Malan, Chantelle
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141866 , vital:38011 , DOI: 10.1080/21604851.2015.1015397
- Description: This study examines news reporting on South Africa’s alleged “obesity” epidemic between 1997 and 2012. Results indicate that fatness is equated with disease, crisis, and dysfunction and the fat black body is singled out for particular attention as a social problem. News reporting on fat in South Africa uncritically takes up the views of sources with commercial interests who are presented as “experts” on fat. Their interpretations of the fat black body as a social problem are influenced by the imperative of new markets for products that are to be found principally in the ranks of the post-apartheid black middle class.
- Full Text:
- Date Issued: 2016
Intra-and inter-group perceptions of Chinese and Tanzanian employees in intercultural cooperation
- Mayer, Claude-Hélène, Boness, Christian M, Louw, Lynette, Louw, Mattheus J
- Authors: Mayer, Claude-Hélène , Boness, Christian M , Louw, Lynette , Louw, Mattheus J
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61111 , vital:27976 , http://www.up.ac.za/media/shared/643/ZP_Files/2016/Papers/hrl18_full.zp97856.pdf , ISBN 9780620717977
- Description: The cooperation between Chinese and Tanzanian employees and organisations has a very long tradition in Tanzanian history. The purpose of this paper is to explore and understand how Chinese and Tanzanian employees see themselves and “the other” while cooperating. This research presents a study of a single case, conducted in a selected Chinese organisation in Tanzania. It uses a hermeneutical research paradigm. Data was collected using semi-structured interviews and observation and analysed through content analysis, following Terre Blanche’s model. Findings demonstrate and explain the perspectives which Chinese and Tanzanian employees hold mutually with regard to the group image of self and other within the organisation, as well as perceptions of self and other in terms of organisational, environmental and cultural contexts. Since this is a qualitative single organisational case study, the findings are limited to this single organisation and are not generalisable. Conclusions drawn from the new research insights are provided and recommendations are given in terms of how Chinese and Tanzanian perceptions present themselves and how organisations could work with self-image and counter images to improve intercultural cooperation.
- Full Text:
- Date Issued: 2016
- Authors: Mayer, Claude-Hélène , Boness, Christian M , Louw, Lynette , Louw, Mattheus J
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61111 , vital:27976 , http://www.up.ac.za/media/shared/643/ZP_Files/2016/Papers/hrl18_full.zp97856.pdf , ISBN 9780620717977
- Description: The cooperation between Chinese and Tanzanian employees and organisations has a very long tradition in Tanzanian history. The purpose of this paper is to explore and understand how Chinese and Tanzanian employees see themselves and “the other” while cooperating. This research presents a study of a single case, conducted in a selected Chinese organisation in Tanzania. It uses a hermeneutical research paradigm. Data was collected using semi-structured interviews and observation and analysed through content analysis, following Terre Blanche’s model. Findings demonstrate and explain the perspectives which Chinese and Tanzanian employees hold mutually with regard to the group image of self and other within the organisation, as well as perceptions of self and other in terms of organisational, environmental and cultural contexts. Since this is a qualitative single organisational case study, the findings are limited to this single organisation and are not generalisable. Conclusions drawn from the new research insights are provided and recommendations are given in terms of how Chinese and Tanzanian perceptions present themselves and how organisations could work with self-image and counter images to improve intercultural cooperation.
- Full Text:
- Date Issued: 2016
Investigating multi-thread utilization as a software defence mechanism against side channel attacks
- Frieslaar, Ibraheem, Irwin, Barry V W
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430190 , vital:72672 , https://doi.org/10.1145/3015166.3015176
- Description: A state-of-the-art software countermeasure to defend against side channel attacks is investigated in this work. The implementation of this novel approach consists of using multi-threads and a task scheduler on a microcontroller to purposefully leak out information at critical points in the cryptographic algorithm and confuse the attacker. This research demonstrates it is capable of outperforming the known countermeasure of hiding and shuffling in terms of preventing the secret information from being leaked out. Furthermore, the proposed countermeasure mitigates the side channel attacks, such as correlation power analysis and template attacks.
- Full Text:
- Date Issued: 2016
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/430190 , vital:72672 , https://doi.org/10.1145/3015166.3015176
- Description: A state-of-the-art software countermeasure to defend against side channel attacks is investigated in this work. The implementation of this novel approach consists of using multi-threads and a task scheduler on a microcontroller to purposefully leak out information at critical points in the cryptographic algorithm and confuse the attacker. This research demonstrates it is capable of outperforming the known countermeasure of hiding and shuffling in terms of preventing the secret information from being leaked out. Furthermore, the proposed countermeasure mitigates the side channel attacks, such as correlation power analysis and template attacks.
- Full Text:
- Date Issued: 2016
Keeping it in the family: coevolution of latrunculid sponges and their dominant bacterial symbionts
- Matcher, Gwynneth F, Waterworth, Samantha C, Walmsley, Tara A, Matsatsa, Tendayi, Parker-Nance, Shirley, Davies-Coleman, Michael T, Dorrington, Rosemary A
- Authors: Matcher, Gwynneth F , Waterworth, Samantha C , Walmsley, Tara A , Matsatsa, Tendayi , Parker-Nance, Shirley , Davies-Coleman, Michael T , Dorrington, Rosemary A
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/65603 , vital:28818 , https://doi.org/10.1002/mbo3.417
- Description: publisher version , The Latrunculiidae are a family of cold water sponges known for their production of bioactive pyrroloiminoquinone alkaloids. Previously it was shown that the bacterial community associated with a Tsitsikamma sponge species comprises unusual bacterial taxa and is dominated by a novel Betaproteobacterium. Here, we have characterized the bacterial communities associated with six latrunculid species representing three genera (Tsitsikamma, Cyclacanthia, and Latrunculia) as well as a Mycale species, collected from Algoa Bay on the South African southeast coast. The bacterial communities of all seven sponge species were dominated by a single Betaproteobacterium operational taxonomic unit (OTU0.03), while a second OTU0.03 was dominant in the Mycale sp. The Betaproteobacteria OTUs from the different latrunculid sponges are closely related and their phylogenetic relationship follows that of their hosts. We propose that the latrunculid Betaproteobacteria OTUs are members of a specialized group of sponge symbionts that may have coevolved with their hosts. A single dominant Spirochaetae OTU0.03 was present in the Tsitsikamma and Cyclacanthia sponge species, but absent from the Latrunculia and Mycale sponges. This study sheds new light on the interactions between latrunculid sponges and their bacterial communities and may point to the potential involvement of dominant symbionts in the biosynthesis of the bioactive secondary metabolites. , This research was supported by a SARChI grant from the South African National Research Foundation (NRF, GUN: 87583) and the Rhodes University Sandisa Imbewu Programme. S. C. W. was supported by an NRF Innovation PhD Scholarship and a Rhodes University Henderson PhD Scholarship. T. A. W. was supported by PhD Fellowships from the NRF and the German Academic Exchange Service (DAAD)
- Full Text:
- Date Issued: 2016
- Authors: Matcher, Gwynneth F , Waterworth, Samantha C , Walmsley, Tara A , Matsatsa, Tendayi , Parker-Nance, Shirley , Davies-Coleman, Michael T , Dorrington, Rosemary A
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/65603 , vital:28818 , https://doi.org/10.1002/mbo3.417
- Description: publisher version , The Latrunculiidae are a family of cold water sponges known for their production of bioactive pyrroloiminoquinone alkaloids. Previously it was shown that the bacterial community associated with a Tsitsikamma sponge species comprises unusual bacterial taxa and is dominated by a novel Betaproteobacterium. Here, we have characterized the bacterial communities associated with six latrunculid species representing three genera (Tsitsikamma, Cyclacanthia, and Latrunculia) as well as a Mycale species, collected from Algoa Bay on the South African southeast coast. The bacterial communities of all seven sponge species were dominated by a single Betaproteobacterium operational taxonomic unit (OTU0.03), while a second OTU0.03 was dominant in the Mycale sp. The Betaproteobacteria OTUs from the different latrunculid sponges are closely related and their phylogenetic relationship follows that of their hosts. We propose that the latrunculid Betaproteobacteria OTUs are members of a specialized group of sponge symbionts that may have coevolved with their hosts. A single dominant Spirochaetae OTU0.03 was present in the Tsitsikamma and Cyclacanthia sponge species, but absent from the Latrunculia and Mycale sponges. This study sheds new light on the interactions between latrunculid sponges and their bacterial communities and may point to the potential involvement of dominant symbionts in the biosynthesis of the bioactive secondary metabolites. , This research was supported by a SARChI grant from the South African National Research Foundation (NRF, GUN: 87583) and the Rhodes University Sandisa Imbewu Programme. S. C. W. was supported by an NRF Innovation PhD Scholarship and a Rhodes University Henderson PhD Scholarship. T. A. W. was supported by PhD Fellowships from the NRF and the German Academic Exchange Service (DAAD)
- Full Text:
- Date Issued: 2016
Knowledge and knowers in teaching and learning: an enhanced approach to curriculum alignment
- Authors: Clarence, Sherran
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59823 , vital:27655 , http://www.legitimationcodetheory.com/pdf/2016Clarence-c.pdf
- Description: John Biggs’ well-known curriculum design approach, constructive alignment, is widely used in higher education in the United Kingdom, Australia and South Africa. Developed with one dominant account of learning through curriculum, this approach has a gap in terms of accounting for other kinds of knowledge building, and associated knower development. This paper proposes a complementary approach that accounts for different kinds of knowledge and knower building. Using Legitimation Code Theory’s concept of Specialisation, the paper argues that accounting for what makes a discipline ‘special’ in terms of its basis for legitimate achievement can enable curriculum writers to align curricula more effectively with that basis in different disciplines. Using a case study approach, this paper shows how this tool can provide lecturers and academic development practitioners with a useful mode of analysing curriculum alignment to more ably account for differential development of disciplinary knowledges and knowers.
- Full Text:
- Date Issued: 2016
- Authors: Clarence, Sherran
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59823 , vital:27655 , http://www.legitimationcodetheory.com/pdf/2016Clarence-c.pdf
- Description: John Biggs’ well-known curriculum design approach, constructive alignment, is widely used in higher education in the United Kingdom, Australia and South Africa. Developed with one dominant account of learning through curriculum, this approach has a gap in terms of accounting for other kinds of knowledge building, and associated knower development. This paper proposes a complementary approach that accounts for different kinds of knowledge and knower building. Using Legitimation Code Theory’s concept of Specialisation, the paper argues that accounting for what makes a discipline ‘special’ in terms of its basis for legitimate achievement can enable curriculum writers to align curricula more effectively with that basis in different disciplines. Using a case study approach, this paper shows how this tool can provide lecturers and academic development practitioners with a useful mode of analysing curriculum alignment to more ably account for differential development of disciplinary knowledges and knowers.
- Full Text:
- Date Issued: 2016
Knowledge, perceptions and willingness to control designated invasive tree species in urban household gardens in South Africa
- Shackleton, Charlie M, Shackleton, Ross T
- Authors: Shackleton, Charlie M , Shackleton, Ross T
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180445 , vital:43389 , xlink:href="https://doi.org/10.1007/s10530-016-1104-7"
- Description: Many biological invasions result in negative impacts on the environment and human livelihoods, but simultaneously some also provide benefits that are valued differently by various stakeholders. To inform policy and management of invasive species it is important to assess landowners’ and broader society’s knowledge and perceptions of invasive species, something which is lacking in many contexts, especially in urban settings. In this study we interviewed 153 householders living in a medium-sized South African town who had declared invasive alien trees in their gardens. Less than half of the respondents could identify the invasive tree on their property and only one-third knew that it was an invasive alien species. There was a positive association between income and education levels with exposure to media about invasive alien species and respondents’ ability to identify the species and name any other invasive alien tree species. Knowledge levels were unequal across species. Amongst those who knew the tree was an invasive alien species, reasons why they retained it in their gardens included that it would be costly or too much effort to remove, they liked the tree, that it was not causing any harm and that the property was rented and so its removal was not their responsibility. However, the majority of people (83 %) were willing to have it removed from their garden if done for free by appropriate agencies, which is promising for compliance with new regulations on invasive species implemented at the end of 2014 in South Africa. The results also highlight the need for targeted and appropriate education and awareness programs amongst urban householders on invasive alien species, relevant legislation and their obligations.
- Full Text:
- Date Issued: 2016
- Authors: Shackleton, Charlie M , Shackleton, Ross T
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180445 , vital:43389 , xlink:href="https://doi.org/10.1007/s10530-016-1104-7"
- Description: Many biological invasions result in negative impacts on the environment and human livelihoods, but simultaneously some also provide benefits that are valued differently by various stakeholders. To inform policy and management of invasive species it is important to assess landowners’ and broader society’s knowledge and perceptions of invasive species, something which is lacking in many contexts, especially in urban settings. In this study we interviewed 153 householders living in a medium-sized South African town who had declared invasive alien trees in their gardens. Less than half of the respondents could identify the invasive tree on their property and only one-third knew that it was an invasive alien species. There was a positive association between income and education levels with exposure to media about invasive alien species and respondents’ ability to identify the species and name any other invasive alien tree species. Knowledge levels were unequal across species. Amongst those who knew the tree was an invasive alien species, reasons why they retained it in their gardens included that it would be costly or too much effort to remove, they liked the tree, that it was not causing any harm and that the property was rented and so its removal was not their responsibility. However, the majority of people (83 %) were willing to have it removed from their garden if done for free by appropriate agencies, which is promising for compliance with new regulations on invasive species implemented at the end of 2014 in South Africa. The results also highlight the need for targeted and appropriate education and awareness programs amongst urban householders on invasive alien species, relevant legislation and their obligations.
- Full Text:
- Date Issued: 2016
Listening to the ‘Born Frees’: politics and disillusionment in South Africa
- Malila, Vanessa, Garman, Anthea
- Authors: Malila, Vanessa , Garman, Anthea
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158884 , vital:40237 , https://doi.org/10.1080/23743670.2015.1084587
- Description: In 2014 South Africa celebrated 20 years of democracy, and for many of the ‘Born Frees’ – those who came of age politically after 1996 – this was their first opportunity to vote in national elections. With democracy came the promise for South Africa's marginalised majority of voice and agency, but also the implicit promise that their democratically elected government would listen to them. In addition, the South African media have long championed their role as a voice for the voiceless. This article presents work done with youngsters from South Africa's poorest province, the Eastern Cape, in an effort to listen to their experience of politics and to understand their use of the media – especially whether it enables them to speak out and be heard in the public sphere.
- Full Text:
- Date Issued: 2016
- Authors: Malila, Vanessa , Garman, Anthea
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158884 , vital:40237 , https://doi.org/10.1080/23743670.2015.1084587
- Description: In 2014 South Africa celebrated 20 years of democracy, and for many of the ‘Born Frees’ – those who came of age politically after 1996 – this was their first opportunity to vote in national elections. With democracy came the promise for South Africa's marginalised majority of voice and agency, but also the implicit promise that their democratically elected government would listen to them. In addition, the South African media have long championed their role as a voice for the voiceless. This article presents work done with youngsters from South Africa's poorest province, the Eastern Cape, in an effort to listen to their experience of politics and to understand their use of the media – especially whether it enables them to speak out and be heard in the public sphere.
- Full Text:
- Date Issued: 2016
Lives "on hold": the Daily Sun and the South African identity document
- Authors: Boshoff, Priscilla A
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/143538 , vital:38255 , https://hdl.handle.net/10520/EJC195358
- Description: The relationship between a personal identity and the state-issued Identity Document (ID) is the focus of this article, which examines stories published in the "Horror Affairs" column of the popular South African tabloid, the Daily Sun. These highly emotional stories tell of the despair and desperation felt by individuals at the lack of an ID book, which is blamed on the inefficiency of the state Department of Home Affairs. In order to explicate this relationship I make use of Agamben's notion of "bare life" and the camp in conjunction with Lacan's idea of the Symbolic Order to argue that if the Identity Document provides the means by which the individual is made to signify, the lack of an Identity Document threatens to reduce the individual to "bare life". By publishing the stories of those deprived of the visibility that the ID provides, the Daily Sun, I show, directly engages in this exchange, and, in contrast to Home Affairs, bestows its own even stronger gift of identity by the fact of appearance in its pages.
- Full Text:
- Date Issued: 2016
- Authors: Boshoff, Priscilla A
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/143538 , vital:38255 , https://hdl.handle.net/10520/EJC195358
- Description: The relationship between a personal identity and the state-issued Identity Document (ID) is the focus of this article, which examines stories published in the "Horror Affairs" column of the popular South African tabloid, the Daily Sun. These highly emotional stories tell of the despair and desperation felt by individuals at the lack of an ID book, which is blamed on the inefficiency of the state Department of Home Affairs. In order to explicate this relationship I make use of Agamben's notion of "bare life" and the camp in conjunction with Lacan's idea of the Symbolic Order to argue that if the Identity Document provides the means by which the individual is made to signify, the lack of an Identity Document threatens to reduce the individual to "bare life". By publishing the stories of those deprived of the visibility that the ID provides, the Daily Sun, I show, directly engages in this exchange, and, in contrast to Home Affairs, bestows its own even stronger gift of identity by the fact of appearance in its pages.
- Full Text:
- Date Issued: 2016
Mapping epistemic cultures and learning potential of participants in citizen science projects
- Vallabh, Priya, Lotz-Sisitka, Heila, O'Donoghue, Rob B, Schudel, Ingrid J
- Authors: Vallabh, Priya , Lotz-Sisitka, Heila , O'Donoghue, Rob B , Schudel, Ingrid J
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/128939 , vital:36192 , https://doi.org/10.1111/cobi.12701
- Description: The ever-widening scope and range of global change and interconnected systemic risks arising from people–environment relationships (social‐ecological risks) appears to be increasing concern among, and involvement of, citizens in an increasingly diversified number of citizen science projects responding to these risks. We examined the relationship between epistemic cultures in citizen science projects and learning potential related to matters of concern. We then developed a typology of purposes and a citizen science epistemic‐cultures heuristic and mapped 56 projects in southern Africa using this framework. The purpose typology represents the range of knowledge‐production purposes, ranging from laboratory science to social learning, whereas the epistemic‐cultures typology is a relational representation of scientist and citizen participation and their approach to knowledge production. Results showed an iterative relationship between matters of fact and matters of concern across the projects; the nexus of citizens’ engagement in knowledge‐production activities varied. The knowledge‐production purposes informed and shaped the epistemic cultures of all the sampled citizen science projects, which in turn influenced the potential for learning within each project. Through a historical review of 3 phases in a long‐term river health‐monitoring project, we found that it is possible to evolve the learning curve of citizen science projects. This evolution involved the development of scientific water monitoring tools, the parallel development of pedagogic practices supporting monitoring activities, and situated engagement around matters of concern within social activism leading to learning‐led change. We conclude that such evolutionary processes serve to increase potential for learning and are necessary if citizen science is to contribute to wider restructuring of the epistemic culture of science under conditions of expanding social-ecological risk.
- Full Text:
- Date Issued: 2016
- Authors: Vallabh, Priya , Lotz-Sisitka, Heila , O'Donoghue, Rob B , Schudel, Ingrid J
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/128939 , vital:36192 , https://doi.org/10.1111/cobi.12701
- Description: The ever-widening scope and range of global change and interconnected systemic risks arising from people–environment relationships (social‐ecological risks) appears to be increasing concern among, and involvement of, citizens in an increasingly diversified number of citizen science projects responding to these risks. We examined the relationship between epistemic cultures in citizen science projects and learning potential related to matters of concern. We then developed a typology of purposes and a citizen science epistemic‐cultures heuristic and mapped 56 projects in southern Africa using this framework. The purpose typology represents the range of knowledge‐production purposes, ranging from laboratory science to social learning, whereas the epistemic‐cultures typology is a relational representation of scientist and citizen participation and their approach to knowledge production. Results showed an iterative relationship between matters of fact and matters of concern across the projects; the nexus of citizens’ engagement in knowledge‐production activities varied. The knowledge‐production purposes informed and shaped the epistemic cultures of all the sampled citizen science projects, which in turn influenced the potential for learning within each project. Through a historical review of 3 phases in a long‐term river health‐monitoring project, we found that it is possible to evolve the learning curve of citizen science projects. This evolution involved the development of scientific water monitoring tools, the parallel development of pedagogic practices supporting monitoring activities, and situated engagement around matters of concern within social activism leading to learning‐led change. We conclude that such evolutionary processes serve to increase potential for learning and are necessary if citizen science is to contribute to wider restructuring of the epistemic culture of science under conditions of expanding social-ecological risk.
- Full Text:
- Date Issued: 2016
MARS Motif: Assessment and Ranking Suite for transcription factor binding motifs
- Kibet, Cabel K, Machanick, Philip
- Authors: Kibet, Cabel K , Machanick, Philip
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439339 , vital:73568 , https://doi.org/10.1101/065615
- Description: We describe MARS (Motif Assessment and Ranking Suite), a web-based suite of tools used to evaluate and rank PWM-based motifs. The increased number of learned motif models that are spread across databases and in different PWM formats, leading to a choice dilemma among the users, is our motivation. This increase has been driven by the difficulty of modelling transcription factor binding sites and the advance in high-throughput sequencing technologies at a continually reducing cost. Therefore, several experimental techniques have been developed resulting in diverse motif-finding algorithms and databases. We collate a wide variety of available motifs into a benchmark database, including the corresponding experimental ChIP-seq and PBM data obtained from ENCODE and UniPROBE databases, respectively. The implemented tools include: a data-independent consistency-based motif assessment and ranking (CB-MAR), which is based on the idea that ‘correct motifs’ are more similar to each other while incorrect motifs will differ from each other; and a scoring and classification-based algorithms, which rank binding models by their ability to discriminate sequences known to contain binding sites from those without. The CB-MAR and scoring techniques have a 0.86 and 0.73 median rank correlation using ChIP-seq and PBM respectively. Best motifs selected by CB-MAR achieve a mean AUC of 0.75, comparable to those ranked by held out data at 0.76 – this is based on ChIP-seq motif discovery using five algorithms on 110 transcription factors. We have demonstrated the benefit of this web server in motif choice and ranking, as well as in motif discovery.
- Full Text:
- Date Issued: 2016
- Authors: Kibet, Cabel K , Machanick, Philip
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439339 , vital:73568 , https://doi.org/10.1101/065615
- Description: We describe MARS (Motif Assessment and Ranking Suite), a web-based suite of tools used to evaluate and rank PWM-based motifs. The increased number of learned motif models that are spread across databases and in different PWM formats, leading to a choice dilemma among the users, is our motivation. This increase has been driven by the difficulty of modelling transcription factor binding sites and the advance in high-throughput sequencing technologies at a continually reducing cost. Therefore, several experimental techniques have been developed resulting in diverse motif-finding algorithms and databases. We collate a wide variety of available motifs into a benchmark database, including the corresponding experimental ChIP-seq and PBM data obtained from ENCODE and UniPROBE databases, respectively. The implemented tools include: a data-independent consistency-based motif assessment and ranking (CB-MAR), which is based on the idea that ‘correct motifs’ are more similar to each other while incorrect motifs will differ from each other; and a scoring and classification-based algorithms, which rank binding models by their ability to discriminate sequences known to contain binding sites from those without. The CB-MAR and scoring techniques have a 0.86 and 0.73 median rank correlation using ChIP-seq and PBM respectively. Best motifs selected by CB-MAR achieve a mean AUC of 0.75, comparable to those ranked by held out data at 0.76 – this is based on ChIP-seq motif discovery using five algorithms on 110 transcription factors. We have demonstrated the benefit of this web server in motif choice and ranking, as well as in motif discovery.
- Full Text:
- Date Issued: 2016