A 150 MHz all sky survey with the Precision Array to Probe the Epoch of Reionization
- Authors: Chege, James Kariuki
- Date: 2020
- Subjects: Epoch of reionization -- Research , Astronomy -- Observations , Radio interferometers
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/117733 , vital:34556
- Description: The Precision Array to Probe the Epoch of Reionization (PAPER) was built to measure the redshifted 21 cm line of hydrogen from cosmic reionization. Such low frequency observations promise to be the best means of understanding the cosmic dawn; when the first galaxies in the universe formed, and also the Epoch of Reionization; when the intergalactic medium changed from neutral to ionized. The major challenges to these observations is the presence of astrophysical foregrounds that are much brighter than the cosmological signal. Here, I present an all-sky survey at 150 MHz obtained from the analysis of 300 hours of PAPER observations. Particular focus is given to the calibration and imaging techniques that need to deal with the wide field of view of a non-tracking instrument. The survey covers ~ 7000 square degrees of the southern sky. From a sky area of 4400 square degrees out of the total survey area, I extract a catalogue of sources brighter than 4 Jy whose accuracy was tested against the published GLEAM catalogue, leading to a fractional difference rms better than 20%. The catalogue provides an all-sky accurate model of the extragalactic foreground to be used for the calibration of future Epoch of Reionization observations and to be subtracted from the PAPER observations themselves in order to mitigate the foreground contamination.
- Full Text:
- Date Issued: 2020
- Authors: Chege, James Kariuki
- Date: 2020
- Subjects: Epoch of reionization -- Research , Astronomy -- Observations , Radio interferometers
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/117733 , vital:34556
- Description: The Precision Array to Probe the Epoch of Reionization (PAPER) was built to measure the redshifted 21 cm line of hydrogen from cosmic reionization. Such low frequency observations promise to be the best means of understanding the cosmic dawn; when the first galaxies in the universe formed, and also the Epoch of Reionization; when the intergalactic medium changed from neutral to ionized. The major challenges to these observations is the presence of astrophysical foregrounds that are much brighter than the cosmological signal. Here, I present an all-sky survey at 150 MHz obtained from the analysis of 300 hours of PAPER observations. Particular focus is given to the calibration and imaging techniques that need to deal with the wide field of view of a non-tracking instrument. The survey covers ~ 7000 square degrees of the southern sky. From a sky area of 4400 square degrees out of the total survey area, I extract a catalogue of sources brighter than 4 Jy whose accuracy was tested against the published GLEAM catalogue, leading to a fractional difference rms better than 20%. The catalogue provides an all-sky accurate model of the extragalactic foreground to be used for the calibration of future Epoch of Reionization observations and to be subtracted from the PAPER observations themselves in order to mitigate the foreground contamination.
- Full Text:
- Date Issued: 2020
A baseline survey of channel geomorphology with particular reference to the effects of sediment characteristics on ecosystem health in the Tsitsa River, Eastern Cape, South Africa
- Huchzermeyer, Nicholaus Heinrich
- Authors: Huchzermeyer, Nicholaus Heinrich
- Date: 2018
- Subjects: Fluvial geomorphology -- South Africa -- Eastern Cape , Stream health -- South Africa -- Eastern Cape , River sediments -- South Africa -- Eastern Cape , Watershed management -- South Africa -- Eastern Cape , Dams -- Environmental aspects -- South Africa -- Eastern Cape , Tsitsa River (South Africa) , Ntabelanga Dam (South Africa)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/58056 , vital:27040
- Description: Fluvial systems are dynamic systems in which variables in a catchment and river channel affect the morphology of river reaches. South African rivers are increasingly being exposed to stresses from a combination of factors, one of the most prevalent being the impacts of damming rivers which result in varying downstream sediment fluxes and flow regimes. The sediment load combined with flow characteristics for respective river channels provides the physical habitat for aquatic ecosystems. The damming of the Tsitsa River, through the construction of the Ntabelanga Dam, will change the overall downstream geomorphology. This creates an opportunity for research in the preconstruction window. The current condition of the Tsitsa River was monitored by completing a baseline survey of the channel geomorphology with specific reference to the influence of sediment on river habitats and ecosystem health. Five sites were established in variable reaches of the Tsitsa River, with Site 1 located above the proposed Ntabelanga Dam inundation and Sites 2-5 below the proposed dam wall. Each site included a range of features that can be monitored for their response to the dam. Physical variables, water quality and biota were monitored seasonally to note changes in habitat quality. A baseline survey of the present geomorphology and associated instream habitats of the selected reaches was set up by conducting cross-sectional surveys of channel topography, water slope surveys, discharge measurements and visual and quantitative assessments of substrate. Level loggers were installed at each site to collect continuous data on variations in depth and temperature. Monitoring surveys, in terms of fine sediment accumulation, were conducted to characterise dynamic habitat arrangements and macroinvertebrate community composition. A taxa related physical habitat score for the Tsitsa River was created. The relationship between water quality, physical and ecological characteristics of the Tsitsa River will aid further research in the area as well as create a better understanding of the influence of sediment on river habitats and ecosystem health. Monitoring sites can be used to monitor the impact of catchment-wide rehabilitation on river health prior to the dam being built. After dam construction, the top site above the dam inundation can still be used as a point to monitor the impact of catchment rehabilitation on ecosystem health in terms of fine sediment accumulation.
- Full Text:
- Date Issued: 2018
- Authors: Huchzermeyer, Nicholaus Heinrich
- Date: 2018
- Subjects: Fluvial geomorphology -- South Africa -- Eastern Cape , Stream health -- South Africa -- Eastern Cape , River sediments -- South Africa -- Eastern Cape , Watershed management -- South Africa -- Eastern Cape , Dams -- Environmental aspects -- South Africa -- Eastern Cape , Tsitsa River (South Africa) , Ntabelanga Dam (South Africa)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/58056 , vital:27040
- Description: Fluvial systems are dynamic systems in which variables in a catchment and river channel affect the morphology of river reaches. South African rivers are increasingly being exposed to stresses from a combination of factors, one of the most prevalent being the impacts of damming rivers which result in varying downstream sediment fluxes and flow regimes. The sediment load combined with flow characteristics for respective river channels provides the physical habitat for aquatic ecosystems. The damming of the Tsitsa River, through the construction of the Ntabelanga Dam, will change the overall downstream geomorphology. This creates an opportunity for research in the preconstruction window. The current condition of the Tsitsa River was monitored by completing a baseline survey of the channel geomorphology with specific reference to the influence of sediment on river habitats and ecosystem health. Five sites were established in variable reaches of the Tsitsa River, with Site 1 located above the proposed Ntabelanga Dam inundation and Sites 2-5 below the proposed dam wall. Each site included a range of features that can be monitored for their response to the dam. Physical variables, water quality and biota were monitored seasonally to note changes in habitat quality. A baseline survey of the present geomorphology and associated instream habitats of the selected reaches was set up by conducting cross-sectional surveys of channel topography, water slope surveys, discharge measurements and visual and quantitative assessments of substrate. Level loggers were installed at each site to collect continuous data on variations in depth and temperature. Monitoring surveys, in terms of fine sediment accumulation, were conducted to characterise dynamic habitat arrangements and macroinvertebrate community composition. A taxa related physical habitat score for the Tsitsa River was created. The relationship between water quality, physical and ecological characteristics of the Tsitsa River will aid further research in the area as well as create a better understanding of the influence of sediment on river habitats and ecosystem health. Monitoring sites can be used to monitor the impact of catchment-wide rehabilitation on river health prior to the dam being built. After dam construction, the top site above the dam inundation can still be used as a point to monitor the impact of catchment rehabilitation on ecosystem health in terms of fine sediment accumulation.
- Full Text:
- Date Issued: 2018
A Bayesian approach to tilted-ring modelling of galaxies
- Authors: Maina, Eric Kamau
- Date: 2020
- Subjects: Bayesian statistical decision theory , Galaxies , Radio astronomy , TiRiFiC (Tilted Ring Fitting Code) , Neutral hydrogen , Spectroscopic data cubes , Galaxy parametrisation
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/145783 , vital:38466
- Description: The orbits of neutral hydrogen (H I) gas found in most disk galaxies are circular and also exhibit long-lived warps at large radii where the restoring gravitational forces of the inner disk become weak (Spekkens and Giovanelli 2006). These warps make the tilted-ring model an ideal choice for galaxy parametrisation. Analysis software utilizing the tilted-ring-model can be grouped into two and three-dimensional based software. Józsa et al. (2007b) demonstrated that three dimensional based software is better suited for galaxy parametrisation because it is affected by the effect of beam smearing only by increasing the uncertainty of parameters but not with the notorious systematic effects observed for two-dimensional fitting techniques. TiRiFiC, The Tilted Ring Fitting Code (Józsa et al. 2007b), is a software to construct parameterised models of high-resolution data cubes of rotating galaxies. It uses the tilted-ring model, and with that, a combination of some parameters such as surface brightness, position angle, rotation velocity and inclination, to describe galaxies. TiRiFiC works by directly fitting tilted-ring models to spectroscopic data cubes and hence is not affected by beam smearing or line-of-site-effects, e.g. strong warps. Because of that, the method is unavoidable as an analytic method in future Hi surveys. In the current implementation, though, there are several drawbacks. The implemented optimisers search for local solutions in parameter space only, do not quantify correlations between parameters and cannot find errors of single parameters. In theory, these drawbacks can be overcome by using Bayesian statistics, implemented in Multinest (Feroz et al. 2008), as it allows for sampling a posterior distribution irrespective of its multimodal nature resulting in parameter samples that correspond to the maximum in the posterior distribution. These parameter samples can be used as well to quantify correlations and find errors of single parameters. Since this method employs Bayesian statistics, it also allows the user to leverage any prior information they may have on parameter values.
- Full Text:
- Date Issued: 2020
- Authors: Maina, Eric Kamau
- Date: 2020
- Subjects: Bayesian statistical decision theory , Galaxies , Radio astronomy , TiRiFiC (Tilted Ring Fitting Code) , Neutral hydrogen , Spectroscopic data cubes , Galaxy parametrisation
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/145783 , vital:38466
- Description: The orbits of neutral hydrogen (H I) gas found in most disk galaxies are circular and also exhibit long-lived warps at large radii where the restoring gravitational forces of the inner disk become weak (Spekkens and Giovanelli 2006). These warps make the tilted-ring model an ideal choice for galaxy parametrisation. Analysis software utilizing the tilted-ring-model can be grouped into two and three-dimensional based software. Józsa et al. (2007b) demonstrated that three dimensional based software is better suited for galaxy parametrisation because it is affected by the effect of beam smearing only by increasing the uncertainty of parameters but not with the notorious systematic effects observed for two-dimensional fitting techniques. TiRiFiC, The Tilted Ring Fitting Code (Józsa et al. 2007b), is a software to construct parameterised models of high-resolution data cubes of rotating galaxies. It uses the tilted-ring model, and with that, a combination of some parameters such as surface brightness, position angle, rotation velocity and inclination, to describe galaxies. TiRiFiC works by directly fitting tilted-ring models to spectroscopic data cubes and hence is not affected by beam smearing or line-of-site-effects, e.g. strong warps. Because of that, the method is unavoidable as an analytic method in future Hi surveys. In the current implementation, though, there are several drawbacks. The implemented optimisers search for local solutions in parameter space only, do not quantify correlations between parameters and cannot find errors of single parameters. In theory, these drawbacks can be overcome by using Bayesian statistics, implemented in Multinest (Feroz et al. 2008), as it allows for sampling a posterior distribution irrespective of its multimodal nature resulting in parameter samples that correspond to the maximum in the posterior distribution. These parameter samples can be used as well to quantify correlations and find errors of single parameters. Since this method employs Bayesian statistics, it also allows the user to leverage any prior information they may have on parameter values.
- Full Text:
- Date Issued: 2020
A community–wide trophic structure analysis in intertidal ecosystems on the south coast of South Africa
- Authors: Gusha, Molline Natanah C
- Date: 2018
- Subjects: Food chains (Ecology) , Coastal ecology -- South Africa , Intertidal ecology -- South Africa , Marine animals -- Climatic factors -- South Africa , Marine animals -- Food -- South Africa , Marine animals -- Habitat -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63312 , vital:28392
- Description: Coastal ecosystems are more than microhabitats for marine species. Acting as atmospheric carbon filters, species in coastal environments are directly and/or indirectly associated with transferring organic carbon to species at higher trophic levels. However, the progressing change in global climatic conditions has created the need to assess the consequences of the shifting conditions on both direct and indirect interactions of physical and biological parameters at species and/or community levels. From these perturbations, the effects of biotic homogenization on ecosystem functioning and resilience can also be realised. Herein, I discuss the effects of temperature, nutrients, biotic interactions and habitat characteristics on community dynamics within intertidal rock pool systems on the south coast of South Africa using complementary qualitative and quantitative analytical methods. Seasonality had a significant impact on rock pool species with changes in composition and higher richness in winter than summer. The first two axes of the Canonical Correspondence Analysis (CCA) of the plant and animal communities each explained ~20% of the relationship between physico-chemical parameters and biological variables. The CCA highlighted that seasonal shifts in chlorophyll-a, conductivity, salinity, water depth, surface area and substratum type indirectly influenced species composition. For example, pools with heterogenous substratum comprising a mixture of sand and rock exhibited higher species diversity than homogenously bedded pools. Furthermore, a Bayesian analysis of community structure based on stable isotope ratios was used to assess how trophic pathways of carbon and nitrogen elements reflected community composition and richness. Isotopic biplots showed an increase in food web size, food chain length and the trophic positions of fish and some gastropods in winter compared to summer. There was greater dietary overlap among species in larger pools. In addition, while isotopic nearest neighbour distance and species evenness also showed a positive increase with pool size in summer, the same metrics were almost constant across all pool sizes in winter. These changes in food web packing and species evenness suggest seasonal preferences or migration of species in summer from small pools to larger pools with stable physico-chemical parameters. Furthermore, the presence of fish was seen to promote trophic diversity within some pools. The results from laboratory microcosm grazing experiments demonstrated significant direct and indirect effects of temperature and nutrients within plankton communities. Copepod grazing had an indirect positive influence on phytoplankton biomass and size structure while the interactive effects of temperature and nutrients had contrasting effects on both phytoplankton communities and copepod biomass. Shifts in water chemistry and nutrient treatments were also observed in the presence of copepods. Phosphate addition had a recognisable impact on plankton communities. The presented synthesis of the literature mainly highlighted that positive effects at one trophic level do not always positively cascade into the next trophic level which is evidence of complex interactive biotic, habitat and water chemistry effects within these intertidal ecosystems. Thus, to further understand cascading effects or community structure functioning in general, there may be a need to incorporate and understand species functional traits and how they contribute to trophic diversity, community restructuring and functioning in coastal habitats.
- Full Text:
- Date Issued: 2018
- Authors: Gusha, Molline Natanah C
- Date: 2018
- Subjects: Food chains (Ecology) , Coastal ecology -- South Africa , Intertidal ecology -- South Africa , Marine animals -- Climatic factors -- South Africa , Marine animals -- Food -- South Africa , Marine animals -- Habitat -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63312 , vital:28392
- Description: Coastal ecosystems are more than microhabitats for marine species. Acting as atmospheric carbon filters, species in coastal environments are directly and/or indirectly associated with transferring organic carbon to species at higher trophic levels. However, the progressing change in global climatic conditions has created the need to assess the consequences of the shifting conditions on both direct and indirect interactions of physical and biological parameters at species and/or community levels. From these perturbations, the effects of biotic homogenization on ecosystem functioning and resilience can also be realised. Herein, I discuss the effects of temperature, nutrients, biotic interactions and habitat characteristics on community dynamics within intertidal rock pool systems on the south coast of South Africa using complementary qualitative and quantitative analytical methods. Seasonality had a significant impact on rock pool species with changes in composition and higher richness in winter than summer. The first two axes of the Canonical Correspondence Analysis (CCA) of the plant and animal communities each explained ~20% of the relationship between physico-chemical parameters and biological variables. The CCA highlighted that seasonal shifts in chlorophyll-a, conductivity, salinity, water depth, surface area and substratum type indirectly influenced species composition. For example, pools with heterogenous substratum comprising a mixture of sand and rock exhibited higher species diversity than homogenously bedded pools. Furthermore, a Bayesian analysis of community structure based on stable isotope ratios was used to assess how trophic pathways of carbon and nitrogen elements reflected community composition and richness. Isotopic biplots showed an increase in food web size, food chain length and the trophic positions of fish and some gastropods in winter compared to summer. There was greater dietary overlap among species in larger pools. In addition, while isotopic nearest neighbour distance and species evenness also showed a positive increase with pool size in summer, the same metrics were almost constant across all pool sizes in winter. These changes in food web packing and species evenness suggest seasonal preferences or migration of species in summer from small pools to larger pools with stable physico-chemical parameters. Furthermore, the presence of fish was seen to promote trophic diversity within some pools. The results from laboratory microcosm grazing experiments demonstrated significant direct and indirect effects of temperature and nutrients within plankton communities. Copepod grazing had an indirect positive influence on phytoplankton biomass and size structure while the interactive effects of temperature and nutrients had contrasting effects on both phytoplankton communities and copepod biomass. Shifts in water chemistry and nutrient treatments were also observed in the presence of copepods. Phosphate addition had a recognisable impact on plankton communities. The presented synthesis of the literature mainly highlighted that positive effects at one trophic level do not always positively cascade into the next trophic level which is evidence of complex interactive biotic, habitat and water chemistry effects within these intertidal ecosystems. Thus, to further understand cascading effects or community structure functioning in general, there may be a need to incorporate and understand species functional traits and how they contribute to trophic diversity, community restructuring and functioning in coastal habitats.
- Full Text:
- Date Issued: 2018
A comparative study of CERBER, MAKTUB and LOCKY Ransomware using a Hybridised-Malware analysis
- Authors: Schmitt, Veronica
- Date: 2019
- Subjects: Microsoft Windows (Computer file) , Data protection , Computer crimes -- Prevention , Computer security , Computer networks -- Security measures , Computers -- Access control , Malware (Computer software)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/92313 , vital:30702
- Description: There has been a significant increase in the prevalence of Ransomware attacks in the preceding four years to date. This indicates that the battle has not yet been won defending against this class of malware. This research proposes that by identifying the similarities within the operational framework of Ransomware strains, a better overall understanding of their operation and function can be achieved. This, in turn, will aid in a quicker response to future attacks. With the average Ransomware attack taking two hours to be identified, it shows that there is not yet a clear understanding as to why these attacks are so successful. Research into Ransomware is limited by what is currently known on the topic. Due to the limitations of the research the decision was taken to only examined three samples of Ransomware from different families. This was decided due to the complexities and comprehensive nature of the research. The in depth nature of the research and the time constraints associated with it did not allow for proof of concept of this framework to be tested on more than three families, but the exploratory work was promising and should be further explored in future research. The aim of the research is to follow the Hybrid-Malware analysis framework which consists of both static and the dynamic analysis phases, in addition to the digital forensic examination of the infected system. This allows for signature-based findings, along with behavioural and forensic findings all in one. This information allows for a better understanding of how this malware is designed and how it infects and remains persistent on a system. The operating system which has been chosen is the Microsoft Window 7 operating system which is still utilised by a significant proportion of Windows users especially in the corporate environment. The experiment process was designed to enable the researcher the ability to collect information regarding the Ransomware and every aspect of its behaviour and communication on a target system. The results can be compared across the three strains to identify the commonalities. The initial hypothesis was that Ransomware variants are all much like an instant cake box consists of specific building blocks which remain the same with the flavouring of the cake mix being the unique feature.
- Full Text:
- Date Issued: 2019
- Authors: Schmitt, Veronica
- Date: 2019
- Subjects: Microsoft Windows (Computer file) , Data protection , Computer crimes -- Prevention , Computer security , Computer networks -- Security measures , Computers -- Access control , Malware (Computer software)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/92313 , vital:30702
- Description: There has been a significant increase in the prevalence of Ransomware attacks in the preceding four years to date. This indicates that the battle has not yet been won defending against this class of malware. This research proposes that by identifying the similarities within the operational framework of Ransomware strains, a better overall understanding of their operation and function can be achieved. This, in turn, will aid in a quicker response to future attacks. With the average Ransomware attack taking two hours to be identified, it shows that there is not yet a clear understanding as to why these attacks are so successful. Research into Ransomware is limited by what is currently known on the topic. Due to the limitations of the research the decision was taken to only examined three samples of Ransomware from different families. This was decided due to the complexities and comprehensive nature of the research. The in depth nature of the research and the time constraints associated with it did not allow for proof of concept of this framework to be tested on more than three families, but the exploratory work was promising and should be further explored in future research. The aim of the research is to follow the Hybrid-Malware analysis framework which consists of both static and the dynamic analysis phases, in addition to the digital forensic examination of the infected system. This allows for signature-based findings, along with behavioural and forensic findings all in one. This information allows for a better understanding of how this malware is designed and how it infects and remains persistent on a system. The operating system which has been chosen is the Microsoft Window 7 operating system which is still utilised by a significant proportion of Windows users especially in the corporate environment. The experiment process was designed to enable the researcher the ability to collect information regarding the Ransomware and every aspect of its behaviour and communication on a target system. The results can be compared across the three strains to identify the commonalities. The initial hypothesis was that Ransomware variants are all much like an instant cake box consists of specific building blocks which remain the same with the flavouring of the cake mix being the unique feature.
- Full Text:
- Date Issued: 2019
A comparison between the responsiveness of selected physiological and subjective mental workload indicators during real-world driving scenarios
- Authors: Schmidtke, Nadia-Jasmine
- Date: 2020
- Subjects: Automobile driving -- Physiological aspects , Automobile driving -- Psychological aspects , Automobile drivers -- Health and hygiene , Mental fatigue , Mental work -- Case studies
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/148115 , vital:38711
- Description: Sub-optimal levels of mental workload in automobile drivers is a risk factor for road accidents. However, mental workload as a construct cannot be directly measured. Common indicators of mental workload include heart rate frequency and variability, eye motion and subjective rating tools. Namely, the National Aeronautics and Space Administration Task Load Index (NASA-TLX), its modified, unweighted version called the Raw-TLX, and the Rating Scale of Mental Effort (RSME). Comparisons between the suitability and responsiveness of these mental workload indicators have been almost exclusively examined in driving simulators. However, real-world driving research is important as even high-fidelity simulators cannot capture the complexity of driving scenarios. Hence, this research aimed to compare the suitability and responsiveness of these mental workload indicators in response to real-world driving scenarios. Six participants drove along a set route for an hour while wearing a heart rate monitor and eye tracker. A dashcam was used to capture footage of the different driving scenarios encountered. The set route comprised of driving through the industrial, residential, provincial main road and Rhodes University campus areas. RSME scores were taken during brief stops after driving though each zone. The NASA-TLX questionnaire was administered on completion of the drive and analysed later as the modified Raw-TLX version. The data collected in response to the encountered driving scenarios were sorted into three meta-groupings. (1) Data was segmented according to the different areas that participants drove through. This was termed Area Events and were long duration scenarios of between five and thirty minutes. These driving scenarios were further segmented into two meta-groups with short duration driving scenarios (< 90 seconds). (2) The Common Events meta-group consisted of driving scenarios that were encountered by all participants. These were scenarios were anticipated by drivers. (3) The All Events meta-group was grouped according to all the driving scenarios that were encountered by participants. It consisted of both anticipated and unanticipated driving scenarios of short durations. Data were further analysed using a method of systematically selecting a threshold value for each mental workload indicator. Responses to driving scenarios which surpassed the threshold were considered indicative of an increase in mental workload. The total frequency of higher mental workload events was used as a determiner responsiveness (or ‘sensitivity’) for each mental workload indicator. Mental workload indicators were evaluated for their responsiveness and suitability for assessing mental workload. Results found blink frequency to be a responsive mental workload indicator for all categories of driving scenarios. Blink frequency and duration were the most responsive short duration mental workload indicators. Furthermore, the indicators were able to distinguish between higher and lower mental workload driving scenarios. However, blink parameters are also sensitive to driver fatigue and drowsiness. Further research on distinguishing mental workload from that of fatigue in response to real-world driving was recommended. Pupil diameter, fixation duration, saccade saccade duration and saccade amplitude were found to be responsive short duration mental workload indicators. However, these measures were not determined to be suitable for real-world driving applications. Pupil diameter was confounded by changing illumination levels. Fixation and saccade responses were confounded by the driving task itself as gaze could not be accounted for. For long duration driving scenarios heart rate frequency, heart rate variability: high-frequency power, blink frequency and RSME were found to be responsive and suitable MWL indicators. The Raw-TLX results could not be assessed for responsiveness as it was administered once. However, it was confirmed as a suitable cumulative mental workload indicator in the application of real-world driving. The moderate levels of workload reported by participants agreed with the experimental protocol that prevented inducing sub-optimal mental workload. Blink frequency shows promise as a responsive and suitable mental workload indicator for different types of driving scenarios. More research is needed regarding the assessment of mental workload during short durations using blink frequency and blink duration. For driving durations between five and thirty minutes long, further research into heart rate frequency, heart rate variability: high frequency power, and the RSME was recommended.
- Full Text:
- Date Issued: 2020
- Authors: Schmidtke, Nadia-Jasmine
- Date: 2020
- Subjects: Automobile driving -- Physiological aspects , Automobile driving -- Psychological aspects , Automobile drivers -- Health and hygiene , Mental fatigue , Mental work -- Case studies
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/148115 , vital:38711
- Description: Sub-optimal levels of mental workload in automobile drivers is a risk factor for road accidents. However, mental workload as a construct cannot be directly measured. Common indicators of mental workload include heart rate frequency and variability, eye motion and subjective rating tools. Namely, the National Aeronautics and Space Administration Task Load Index (NASA-TLX), its modified, unweighted version called the Raw-TLX, and the Rating Scale of Mental Effort (RSME). Comparisons between the suitability and responsiveness of these mental workload indicators have been almost exclusively examined in driving simulators. However, real-world driving research is important as even high-fidelity simulators cannot capture the complexity of driving scenarios. Hence, this research aimed to compare the suitability and responsiveness of these mental workload indicators in response to real-world driving scenarios. Six participants drove along a set route for an hour while wearing a heart rate monitor and eye tracker. A dashcam was used to capture footage of the different driving scenarios encountered. The set route comprised of driving through the industrial, residential, provincial main road and Rhodes University campus areas. RSME scores were taken during brief stops after driving though each zone. The NASA-TLX questionnaire was administered on completion of the drive and analysed later as the modified Raw-TLX version. The data collected in response to the encountered driving scenarios were sorted into three meta-groupings. (1) Data was segmented according to the different areas that participants drove through. This was termed Area Events and were long duration scenarios of between five and thirty minutes. These driving scenarios were further segmented into two meta-groups with short duration driving scenarios (< 90 seconds). (2) The Common Events meta-group consisted of driving scenarios that were encountered by all participants. These were scenarios were anticipated by drivers. (3) The All Events meta-group was grouped according to all the driving scenarios that were encountered by participants. It consisted of both anticipated and unanticipated driving scenarios of short durations. Data were further analysed using a method of systematically selecting a threshold value for each mental workload indicator. Responses to driving scenarios which surpassed the threshold were considered indicative of an increase in mental workload. The total frequency of higher mental workload events was used as a determiner responsiveness (or ‘sensitivity’) for each mental workload indicator. Mental workload indicators were evaluated for their responsiveness and suitability for assessing mental workload. Results found blink frequency to be a responsive mental workload indicator for all categories of driving scenarios. Blink frequency and duration were the most responsive short duration mental workload indicators. Furthermore, the indicators were able to distinguish between higher and lower mental workload driving scenarios. However, blink parameters are also sensitive to driver fatigue and drowsiness. Further research on distinguishing mental workload from that of fatigue in response to real-world driving was recommended. Pupil diameter, fixation duration, saccade saccade duration and saccade amplitude were found to be responsive short duration mental workload indicators. However, these measures were not determined to be suitable for real-world driving applications. Pupil diameter was confounded by changing illumination levels. Fixation and saccade responses were confounded by the driving task itself as gaze could not be accounted for. For long duration driving scenarios heart rate frequency, heart rate variability: high-frequency power, blink frequency and RSME were found to be responsive and suitable MWL indicators. The Raw-TLX results could not be assessed for responsiveness as it was administered once. However, it was confirmed as a suitable cumulative mental workload indicator in the application of real-world driving. The moderate levels of workload reported by participants agreed with the experimental protocol that prevented inducing sub-optimal mental workload. Blink frequency shows promise as a responsive and suitable mental workload indicator for different types of driving scenarios. More research is needed regarding the assessment of mental workload during short durations using blink frequency and blink duration. For driving durations between five and thirty minutes long, further research into heart rate frequency, heart rate variability: high frequency power, and the RSME was recommended.
- Full Text:
- Date Issued: 2020
A comparison of exact string search algorithms for deep packet inspection
- Authors: Hunt, Kieran
- Date: 2018
- Subjects: Algorithms , Firewalls (Computer security) , Computer networks -- Security measures , Intrusion detection systems (Computer security) , Deep Packet Inspection
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60629 , vital:27807
- Description: Every day, computer networks throughout the world face a constant onslaught of attacks. To combat these, network administrators are forced to employ a multitude of mitigating measures. Devices such as firewalls and Intrusion Detection Systems are prevalent today and employ extensive Deep Packet Inspection to scrutinise each piece of network traffic. Systems such as these usually require specialised hardware to meet the demand imposed by high throughput networks. Hardware like this is extremely expensive and singular in its function. It is with this in mind that the string search algorithms are introduced. These algorithms have been proven to perform well when searching through large volumes of text and may be able to perform equally well in the context of Deep Packet Inspection. String search algorithms are designed to match a single pattern to a substring of a given piece of text. This is not unlike the heuristics employed by traditional Deep Packet Inspection systems. This research compares the performance of a large number of string search algorithms during packet processing. Deep Packet Inspection places stringent restrictions on the reliability and speed of the algorithms due to increased performance pressures. A test system had to be designed in order to properly test the string search algorithms in the context of Deep Packet Inspection. The system allowed for precise and repeatable tests of each algorithm and then for their comparison. Of the algorithms tested, the Horspool and Quick Search algorithms posted the best results for both speed and reliability. The Not So Naive and Rabin-Karp algorithms were slowest overall.
- Full Text:
- Date Issued: 2018
- Authors: Hunt, Kieran
- Date: 2018
- Subjects: Algorithms , Firewalls (Computer security) , Computer networks -- Security measures , Intrusion detection systems (Computer security) , Deep Packet Inspection
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60629 , vital:27807
- Description: Every day, computer networks throughout the world face a constant onslaught of attacks. To combat these, network administrators are forced to employ a multitude of mitigating measures. Devices such as firewalls and Intrusion Detection Systems are prevalent today and employ extensive Deep Packet Inspection to scrutinise each piece of network traffic. Systems such as these usually require specialised hardware to meet the demand imposed by high throughput networks. Hardware like this is extremely expensive and singular in its function. It is with this in mind that the string search algorithms are introduced. These algorithms have been proven to perform well when searching through large volumes of text and may be able to perform equally well in the context of Deep Packet Inspection. String search algorithms are designed to match a single pattern to a substring of a given piece of text. This is not unlike the heuristics employed by traditional Deep Packet Inspection systems. This research compares the performance of a large number of string search algorithms during packet processing. Deep Packet Inspection places stringent restrictions on the reliability and speed of the algorithms due to increased performance pressures. A test system had to be designed in order to properly test the string search algorithms in the context of Deep Packet Inspection. The system allowed for precise and repeatable tests of each algorithm and then for their comparison. Of the algorithms tested, the Horspool and Quick Search algorithms posted the best results for both speed and reliability. The Not So Naive and Rabin-Karp algorithms were slowest overall.
- Full Text:
- Date Issued: 2018
A comparison of the legal environmental sustainability requirements of those engaging in the mining cycle, with actual practice in the Carolina X11B quaternary catchment, Mpumalanga, South Africa
- Authors: Thomson, Gareth Peter
- Date: 2018
- Subjects: Mineral industries Environmental aspects South Africa Mpumalanga , Acid mine drainage , Mineral industries Safety measures , Watersheds South Africa , South Africa. National Environmental Management Act, 1998 , Water-supply Law and legislation South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63481 , vital:28417
- Description: Mining is one of the most contentious water users. The mining sector has assumed that promises of economic growth and job creation will enable environmental concerns to be bypassed with as little interference as possible. More recently, the reality of legacy issues related to the inappropriate sign-off of mining sites has become increasingly clear, with acid mine drainage (AMD) being a prime example. There are also increasing concerns regarding uncontrolled prospecting. Climate change is one of the major issues faced in the 21st century, with predictions of heightened water stress for the Southern African region. This, coupled with increased population growth is putting a massive strain on the water resources currently available, making it vital to better protect and ensure the longevity of our water resources. The Carolina Crisis of 2012 highlighted the importance of protecting our water resources, and how easily they can be contaminated to a point where water is not usable. The Carolina crisis provided researchers with a suitable study site to better understand the role mining operations have in a catchment that has experienced a major pollution incident, and what changes have occurred since. In order to understand coal mining practice in relation to regulatory provisions, this project critically explored the processes involved within the mining sector, from ‘cradle-to-grave’, which is known as the coal mining life cycle. In addition, the composite suite of requirements of all the legislative provisions involved in the industry were investigated and the relationship between coal mining practice and environmental protection was explored. These elements were researched in the Upper Komati River Catchment specifically for catchment X11B, using Cultural Historical Activity Theory (CHAT), which gives a holistic understanding of mining as a human activity system. CHAT also sheds light on the issues, gaps and overlaps currently being experienced in the coal mining sector. The Thesis refers to case studies of where mining issues have caused environmental degradation. A complete mining lifecycle in terms of regulatory provisions was compiled, and major issues were uncovered with current legislation in the mining sector that can contribute to the degradation of water resources in South Africa. An integrated water resource quality management plan is needed in order to streamline conservation mandates, identify and reduce duplication of effort and specify roles and responsibilities of authorities involved with decision making process. A Decision Support System (DSS) has been proposed, which would involve adaptive, participatory and inclusive management.
- Full Text:
- Date Issued: 2018
- Authors: Thomson, Gareth Peter
- Date: 2018
- Subjects: Mineral industries Environmental aspects South Africa Mpumalanga , Acid mine drainage , Mineral industries Safety measures , Watersheds South Africa , South Africa. National Environmental Management Act, 1998 , Water-supply Law and legislation South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63481 , vital:28417
- Description: Mining is one of the most contentious water users. The mining sector has assumed that promises of economic growth and job creation will enable environmental concerns to be bypassed with as little interference as possible. More recently, the reality of legacy issues related to the inappropriate sign-off of mining sites has become increasingly clear, with acid mine drainage (AMD) being a prime example. There are also increasing concerns regarding uncontrolled prospecting. Climate change is one of the major issues faced in the 21st century, with predictions of heightened water stress for the Southern African region. This, coupled with increased population growth is putting a massive strain on the water resources currently available, making it vital to better protect and ensure the longevity of our water resources. The Carolina Crisis of 2012 highlighted the importance of protecting our water resources, and how easily they can be contaminated to a point where water is not usable. The Carolina crisis provided researchers with a suitable study site to better understand the role mining operations have in a catchment that has experienced a major pollution incident, and what changes have occurred since. In order to understand coal mining practice in relation to regulatory provisions, this project critically explored the processes involved within the mining sector, from ‘cradle-to-grave’, which is known as the coal mining life cycle. In addition, the composite suite of requirements of all the legislative provisions involved in the industry were investigated and the relationship between coal mining practice and environmental protection was explored. These elements were researched in the Upper Komati River Catchment specifically for catchment X11B, using Cultural Historical Activity Theory (CHAT), which gives a holistic understanding of mining as a human activity system. CHAT also sheds light on the issues, gaps and overlaps currently being experienced in the coal mining sector. The Thesis refers to case studies of where mining issues have caused environmental degradation. A complete mining lifecycle in terms of regulatory provisions was compiled, and major issues were uncovered with current legislation in the mining sector that can contribute to the degradation of water resources in South Africa. An integrated water resource quality management plan is needed in order to streamline conservation mandates, identify and reduce duplication of effort and specify roles and responsibilities of authorities involved with decision making process. A Decision Support System (DSS) has been proposed, which would involve adaptive, participatory and inclusive management.
- Full Text:
- Date Issued: 2018
A convenient approach to the deterministic routing of MIDI messages
- Authors: Shaw, Brent Roy
- Date: 2018
- Subjects: MIDI (Standard) , Microcontrollers , XMOS Limited , Computer architecture , Embedded computer systems
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63256 , vital:28387
- Description: This research investigates the design and development of a Wireless MIDI Connection Management solution in order to create a deterministic MIDI transmission system. A investigation of the MIDI protocol show it to have certain limitation that can be overcome through the use of transmission solutions. These solutions can be used to improve on the versatility of MIDI while overcoming the MIDI's notorious cable length limitation. XMOS's deterministic XS1 microcontrollers are used to enable the design of a real-time system. The MIDINet system is investigated to identify both the strengths and weaknesses of such a connection management system, while other systems for network transmission of MIDI messages are reviewed. These investigations lead to a design concept for a new network MIDI transmission system that allows for the remote management of connections. The design and subsequent implementation of both the transmission system and the connection management system are then detailed. A testing methodology is then devised to allow for the newly created connection management system to be compared to the MIDINet system. The findings show the deterministic system to have lower latency than that of the MIDINet system, while utilising more compact and power efficient hardware.
- Full Text:
- Date Issued: 2018
- Authors: Shaw, Brent Roy
- Date: 2018
- Subjects: MIDI (Standard) , Microcontrollers , XMOS Limited , Computer architecture , Embedded computer systems
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63256 , vital:28387
- Description: This research investigates the design and development of a Wireless MIDI Connection Management solution in order to create a deterministic MIDI transmission system. A investigation of the MIDI protocol show it to have certain limitation that can be overcome through the use of transmission solutions. These solutions can be used to improve on the versatility of MIDI while overcoming the MIDI's notorious cable length limitation. XMOS's deterministic XS1 microcontrollers are used to enable the design of a real-time system. The MIDINet system is investigated to identify both the strengths and weaknesses of such a connection management system, while other systems for network transmission of MIDI messages are reviewed. These investigations lead to a design concept for a new network MIDI transmission system that allows for the remote management of connections. The design and subsequent implementation of both the transmission system and the connection management system are then detailed. A testing methodology is then devised to allow for the newly created connection management system to be compared to the MIDINet system. The findings show the deterministic system to have lower latency than that of the MIDINet system, while utilising more compact and power efficient hardware.
- Full Text:
- Date Issued: 2018
A framework for malicious host fingerprinting using distributed network sensors
- Authors: Hunter, Samuel Oswald
- Date: 2018
- Subjects: Computer networks -- Security measures , Malware (Computer software) , Multisensor data fusion , Distributed Sensor Networks , Automated Reconnaissance Framework , Latency Based Multilateration
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60653 , vital:27811
- Description: Numerous software agents exist and are responsible for increasing volumes of malicious traffic that is observed on the Internet today. From a technical perspective the existing techniques for monitoring malicious agents and traffic were not developed to allow for the interrogation of the source of malicious traffic. This interrogation or reconnaissance would be considered active analysis as opposed to existing, mostly passive analysis. Unlike passive analysis, the active techniques are time-sensitive and their results become increasingly inaccurate as time delta between observation and interrogation increases. In addition to this, some studies had shown that the geographic separation of hosts on the Internet have resulted in pockets of different malicious agents and traffic targeting victims. As such it would be important to perform any kind of data collection over various source and in distributed IP address space. The data gathering and exposure capabilities of sensors such as honeypots and network telescopes were extended through the development of near-realtime Distributed Sensor Network modules that allowed for the near-realtime analysis of malicious traffic from distributed, heterogeneous monitoring sensors. In order to utilise the data exposed by the near-realtime Distributed Sensor Network modules an Automated Reconnaissance Framework was created, this framework was tasked with active and passive information collection and analysis of data in near-realtime and was designed from an adapted Multi Sensor Data Fusion model. The hypothesis was made that if sufficiently different characteristics of a host could be identified; combined they could act as a unique fingerprint for that host, potentially allowing for the re-identification of that host, even if its IP address had changed. To this end the concept of Latency Based Multilateration was introduced, acting as an additional metric for remote host fingerprinting. The vast amount of information gathered by the AR-Framework required the development of visualisation tools which could illustrate this data in near-realtime and also provided various degrees of interaction to accommodate human interpretation of such data. Ultimately the data collected through the application of the near-realtime Distributed Sensor Network and AR-Framework provided a unique perspective of a malicious host demographic. Allowing for new correlations to be drawn between attributes such as common open ports and operating systems, location, and inferred intent of these malicious hosts. The result of which expands our current understanding of malicious hosts on the Internet and enables further research in the area.
- Full Text:
- Date Issued: 2018
- Authors: Hunter, Samuel Oswald
- Date: 2018
- Subjects: Computer networks -- Security measures , Malware (Computer software) , Multisensor data fusion , Distributed Sensor Networks , Automated Reconnaissance Framework , Latency Based Multilateration
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60653 , vital:27811
- Description: Numerous software agents exist and are responsible for increasing volumes of malicious traffic that is observed on the Internet today. From a technical perspective the existing techniques for monitoring malicious agents and traffic were not developed to allow for the interrogation of the source of malicious traffic. This interrogation or reconnaissance would be considered active analysis as opposed to existing, mostly passive analysis. Unlike passive analysis, the active techniques are time-sensitive and their results become increasingly inaccurate as time delta between observation and interrogation increases. In addition to this, some studies had shown that the geographic separation of hosts on the Internet have resulted in pockets of different malicious agents and traffic targeting victims. As such it would be important to perform any kind of data collection over various source and in distributed IP address space. The data gathering and exposure capabilities of sensors such as honeypots and network telescopes were extended through the development of near-realtime Distributed Sensor Network modules that allowed for the near-realtime analysis of malicious traffic from distributed, heterogeneous monitoring sensors. In order to utilise the data exposed by the near-realtime Distributed Sensor Network modules an Automated Reconnaissance Framework was created, this framework was tasked with active and passive information collection and analysis of data in near-realtime and was designed from an adapted Multi Sensor Data Fusion model. The hypothesis was made that if sufficiently different characteristics of a host could be identified; combined they could act as a unique fingerprint for that host, potentially allowing for the re-identification of that host, even if its IP address had changed. To this end the concept of Latency Based Multilateration was introduced, acting as an additional metric for remote host fingerprinting. The vast amount of information gathered by the AR-Framework required the development of visualisation tools which could illustrate this data in near-realtime and also provided various degrees of interaction to accommodate human interpretation of such data. Ultimately the data collected through the application of the near-realtime Distributed Sensor Network and AR-Framework provided a unique perspective of a malicious host demographic. Allowing for new correlations to be drawn between attributes such as common open ports and operating systems, location, and inferred intent of these malicious hosts. The result of which expands our current understanding of malicious hosts on the Internet and enables further research in the area.
- Full Text:
- Date Issued: 2018
A framework for scoring and tagging NetFlow data
- Authors: Sweeney, Michael John
- Date: 2019
- Subjects: NetFlow , Big data , High performance computing , Event processing (Computer science)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/65022 , vital:28654
- Description: With the increase in link speeds and the growth of the Internet, the volume of NetFlow data generated has increased significantly over time and processing these volumes has become a challenge, more specifically a Big Data challenge. With the advent of technologies and architectures designed to handle Big Data volumes, researchers have investigated their application to the processing of NetFlow data. This work builds on prior work wherein a scoring methodology was proposed for identifying anomalies in NetFlow by proposing and implementing a system that allows for automatic, real-time scoring through the adoption of Big Data stream processing architectures. The first part of the research looks at the means of event detection using the scoring approach and implementing as a number of individual, standalone components, each responsible for detecting and scoring a single type of flow trait. The second part is the implementation of these scoring components in a framework, named Themis1, capable of handling high volumes of data with low latency processing times. This was tackled using tools, technologies and architectural elements from the world of Big Data stream processing. The performance of the framework on the stream processing architecture was shown to demonstrate good flow throughput at low processing latencies on a single low end host. The successful demonstration of the framework on a single host opens the way to leverage the scaling capabilities afforded by the architectures and technologies used. This gives weight to the possibility of using this framework for real time threat detection using NetFlow data from larger networked environments.
- Full Text:
- Date Issued: 2019
- Authors: Sweeney, Michael John
- Date: 2019
- Subjects: NetFlow , Big data , High performance computing , Event processing (Computer science)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/65022 , vital:28654
- Description: With the increase in link speeds and the growth of the Internet, the volume of NetFlow data generated has increased significantly over time and processing these volumes has become a challenge, more specifically a Big Data challenge. With the advent of technologies and architectures designed to handle Big Data volumes, researchers have investigated their application to the processing of NetFlow data. This work builds on prior work wherein a scoring methodology was proposed for identifying anomalies in NetFlow by proposing and implementing a system that allows for automatic, real-time scoring through the adoption of Big Data stream processing architectures. The first part of the research looks at the means of event detection using the scoring approach and implementing as a number of individual, standalone components, each responsible for detecting and scoring a single type of flow trait. The second part is the implementation of these scoring components in a framework, named Themis1, capable of handling high volumes of data with low latency processing times. This was tackled using tools, technologies and architectural elements from the world of Big Data stream processing. The performance of the framework on the stream processing architecture was shown to demonstrate good flow throughput at low processing latencies on a single low end host. The successful demonstration of the framework on a single host opens the way to leverage the scaling capabilities afforded by the architectures and technologies used. This gives weight to the possibility of using this framework for real time threat detection using NetFlow data from larger networked environments.
- Full Text:
- Date Issued: 2019
A genetic analysis of the species and intraspecific lineages of Dactylopius Costa (Hemiptera: Dactylopiidae)
- Authors: Van Steenderen, Clarke
- Date: 2020
- Subjects: Dactylopius
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/151491 , vital:39135
- Description: The Cactaceae family comprises 15 genera and nearly 2000 species. With one exception, these are all native to the Americas. Numerous cactaceous species are invasive in other parts of the world, resulting in considerable damage to ecosystem functioning and agricultural practices. The most successful biological control agents used to combat invasive Cactaceae belong to the Dactylopius genus (Hemiptera: Dactylopiidae), comprising eleven species. The Dactylopiidae are exclusively cactophagous and are usually host-specific. Some intraspecific lineages of dactylopiids, often referred to as `biotypes', also display host-specificity, and are used to control particular species of invasive Cactaceae. To date, two lineages within Dactylopius opuntiae (`ficus' and `stricta'), and two within D. tomentosus (`cholla' and `imbricata') have been released in South Africa to control Opuntia ficus-indica and O. stricta, and Cylindropuntia fulgida and C. imbricata, respectively. The `californica var. parkeri' lineage is currently under consideration for release in South Africa for the control of C. pallida. Australia has already released these five lineages, and approved the release of an additional three in 2017; namely D. tomentosus `bigelovii', `cylindropuntia sp.', and `acanthocarpa x echinocarpa'. Many of the Dactylopius species are so morphologically similar, and in the case of lineages, identical, that numerous misidentifications have been made in the past. These errors have had serious implications, such as failed attempts at the biological control of cactus weeds. This thesis aimed to generate a multi-locus genetic database to enable the identification of the species and lineages in the Dactylopiidae family, and to test its accuracy. Seven species were included in the analysis, including two lineages within D. opuntiae and six within D. tomentosus. Genetic characterisation was achieved through the DNA sequencing of three gene regions; namely mitochondrial 12S rRNA and cytochrome c oxidase I (COI), nuclear 18S rRNA, and fragment analysis using two inter-simple sequence repeats (ISSRs). Nucleotide sequences were very effective for species-level identification, where the 12S, 18S, and COI regions showed 100%, 94.59%, and 100% identification accuracy rates, respectively. Additionally, the 12S and COI markers distinguished between half of the D. tomentosus lineages (`californica', `cholla', and `imbricata'), with identification accuracies of 100%. The `echinocarpa x acanthocarpa', `bigelovii', and `cylindropuntia sp.' lineages formed one clade. None of the DNA genetic markers showed a separation between the `ficus' and `stricta' lineages within D. opuntiae. Fragment analysis through the use of ISSRs provided higher-resolution results, and addressed this gap by showing a well-supported separation between the two lineages, and between wild populations collected in the Eastern Cape Province in South Africa. The identification accuracy of the `ficus' and `stricta' lineages was 81.82%. This is the first time that a method has been developed that can distinguish between these lineages. An additional component of this thesis was the creation of three user-friendly R-based programs to assist with: 1. ISSR data processing. 2. The identification of query Dactylopius nucleotide sequences relative to the gene databases created here. 3. A graphical user interface (GUI) version of the R package `SPIDER', which is useful for the assessment of the accuracy of genetic barcode data. A successful biological control programme relies on the correct identification of the agent in question, and so it is imperative that cactus biological control practitioners are able to distinguish between Dactylopius species and lineages in order to release the most effective ones onto target Cactaceae. The laboratory protocols reported, and data processing tools created here, have largely addressed this need and offer valuable practical applications. These include: 1. The flagging of potential new species, cryptic species, and lineages of dactylopiid species released as new biocontrol agents. 2. Validating the identifications made by taxonomists based on morphology. 3. Confirming to which species, and, where applicable, to which lineage, a field-collected sample belongs. 4. Identifying hybrids resulting from lineage crosses. Ensuring that the correct Dactylopius species are utilised for biological control will improve the control of invasive Cactaceae and protect biodiversity and agricultural productivity.
- Full Text:
- Date Issued: 2020
- Authors: Van Steenderen, Clarke
- Date: 2020
- Subjects: Dactylopius
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/151491 , vital:39135
- Description: The Cactaceae family comprises 15 genera and nearly 2000 species. With one exception, these are all native to the Americas. Numerous cactaceous species are invasive in other parts of the world, resulting in considerable damage to ecosystem functioning and agricultural practices. The most successful biological control agents used to combat invasive Cactaceae belong to the Dactylopius genus (Hemiptera: Dactylopiidae), comprising eleven species. The Dactylopiidae are exclusively cactophagous and are usually host-specific. Some intraspecific lineages of dactylopiids, often referred to as `biotypes', also display host-specificity, and are used to control particular species of invasive Cactaceae. To date, two lineages within Dactylopius opuntiae (`ficus' and `stricta'), and two within D. tomentosus (`cholla' and `imbricata') have been released in South Africa to control Opuntia ficus-indica and O. stricta, and Cylindropuntia fulgida and C. imbricata, respectively. The `californica var. parkeri' lineage is currently under consideration for release in South Africa for the control of C. pallida. Australia has already released these five lineages, and approved the release of an additional three in 2017; namely D. tomentosus `bigelovii', `cylindropuntia sp.', and `acanthocarpa x echinocarpa'. Many of the Dactylopius species are so morphologically similar, and in the case of lineages, identical, that numerous misidentifications have been made in the past. These errors have had serious implications, such as failed attempts at the biological control of cactus weeds. This thesis aimed to generate a multi-locus genetic database to enable the identification of the species and lineages in the Dactylopiidae family, and to test its accuracy. Seven species were included in the analysis, including two lineages within D. opuntiae and six within D. tomentosus. Genetic characterisation was achieved through the DNA sequencing of three gene regions; namely mitochondrial 12S rRNA and cytochrome c oxidase I (COI), nuclear 18S rRNA, and fragment analysis using two inter-simple sequence repeats (ISSRs). Nucleotide sequences were very effective for species-level identification, where the 12S, 18S, and COI regions showed 100%, 94.59%, and 100% identification accuracy rates, respectively. Additionally, the 12S and COI markers distinguished between half of the D. tomentosus lineages (`californica', `cholla', and `imbricata'), with identification accuracies of 100%. The `echinocarpa x acanthocarpa', `bigelovii', and `cylindropuntia sp.' lineages formed one clade. None of the DNA genetic markers showed a separation between the `ficus' and `stricta' lineages within D. opuntiae. Fragment analysis through the use of ISSRs provided higher-resolution results, and addressed this gap by showing a well-supported separation between the two lineages, and between wild populations collected in the Eastern Cape Province in South Africa. The identification accuracy of the `ficus' and `stricta' lineages was 81.82%. This is the first time that a method has been developed that can distinguish between these lineages. An additional component of this thesis was the creation of three user-friendly R-based programs to assist with: 1. ISSR data processing. 2. The identification of query Dactylopius nucleotide sequences relative to the gene databases created here. 3. A graphical user interface (GUI) version of the R package `SPIDER', which is useful for the assessment of the accuracy of genetic barcode data. A successful biological control programme relies on the correct identification of the agent in question, and so it is imperative that cactus biological control practitioners are able to distinguish between Dactylopius species and lineages in order to release the most effective ones onto target Cactaceae. The laboratory protocols reported, and data processing tools created here, have largely addressed this need and offer valuable practical applications. These include: 1. The flagging of potential new species, cryptic species, and lineages of dactylopiid species released as new biocontrol agents. 2. Validating the identifications made by taxonomists based on morphology. 3. Confirming to which species, and, where applicable, to which lineage, a field-collected sample belongs. 4. Identifying hybrids resulting from lineage crosses. Ensuring that the correct Dactylopius species are utilised for biological control will improve the control of invasive Cactaceae and protect biodiversity and agricultural productivity.
- Full Text:
- Date Issued: 2020
A hydrogeological investigation of Grahamstown, assessing both the dynamics and quality of the local groundwater system
- Authors: Smetherham, Kyle Norman
- Date: 2019
- Subjects: Hydrogeology -- South Africa -- Makhanda , Water quality -- South Africa -- Makhanda , Groundwater -- Quality -- South Africa -- Makhanda
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/94444 , vital:31045
- Description: In many parts of South Africa, complete allocation of surface water reservoirs together with current drought conditions has led to serious water shortages and subsequent awareness regarding the importance to save water. Grahamstown is no different, with water problems relating to low supply and high demand being compounded by insufficient treatment capacity and aging infrastructure. Groundwater is an alternative water resource that could potentially act as a supplementary and/or emergency supply to the town, reducing the reliability on surface reservoirs. Groundwater however, is a hidden resource and requires an understanding of various aquifer properties and continuous monitoring and modelling so not to permanently disrupt the natural system but rather achieve sustainable management. Grahamstown is situated towards the northern extent of the Cape Fold Belt (CFB) system, within a synclinal fold structure. The local geology forms two local aquifer systems beneath Grahamstown that directly influence both the dynamics and quality of the groundwater. These underground reservoirs are the Witpoort and Dwyka aquifers and can be described as a semi-confined, fractured, quartzitic sandstone aquifer and an unconfined, fractured, tillite aquifer, respectively. Separating these aquifer systems is a shale aquitard, although due to the fractured nature of the rocks in the region there is most likely some groundwater interaction between them. Evaluation of geological formations together with the monitoring of 31 local boreholes presented a valuable conceptualisation of the local system and allowed for the application of methods to estimate recharge. Recharge estimation is one of the most crucial factors when managing aquifer systems as it can be used to determine what proportion of rainfall contributes to the subsurface reservoir and therefore, the sustainable amount that can be extracted. Various methods have been developed to estimate recharge, however due to the uncertainty surrounding groundwater systems, especially fractured aquifers, it was important to apply multiple methods to validate results. The water-table fluctuation (WTF) and cumulative rainfall departure (CRD) are two methods that were used in the present study to determine recharge. These methods rely on water-table changes in boreholes and specifically how they respond to rainfall events. Along with the WTF and CRD methods, a modelling approach was also used to estimate recharge which focused on the dynamics of a natural groundwater outlet, termed the Fairview Spring. This natural spring system is located just outside the main town of Grahamstown, within the Witpoort aquifer system, and is an important water resource to many residents due to poor supply and quality of municipal water. Monitoring the discharge of this spring allowed for the development of a model which attempts to recreate the discharge conditions observed. Along with groundwater recharge, other processes added to the model include evapotranspiration, storage, interflow spring outflow and groundwater outflow. Several different model simulation scenarios provided valuable insight into the greater groundwater dynamics. In terms of groundwater quality, nine borehole samples and one spring sample were analysed for major ions (Ca, Na, K, Cl, Mg, SO4, HCO3), metals (Cu, Fe, Mn) as well as pH and electrical conductivity. Overall electrical conductivity levels and major ion concentrations were lower in the Witpoort aquifer indicating a better groundwater quality compared to that of the Dwyka aquifer. Of the three metals included in the analysis, Mn proved to be the most significant and the highest concentrations were produced for samples that intersected the shale aquitard unit, suggesting that Mn-containing groundwater is drawn from this geological layer. Development of a supplementary and/or emergency groundwater supply requires careful consideration of the geology, quantity, quality, and recharge in the study site. All these aspects were assessed as well as deliberation into the potential infrastructural costs involved. Through conceptualisation of the system; evidence gathered during basic monitoring; and a simple spring model, the current study aimed to explore certain management strategies and recommend potential options going forward. The hidden nature of the resource together with the heterogeneity of fracture networks creates an inevitable uncertainty surrounding the system. Proper development and management of the aquifer can only be achieved if the system is continually monitored, modelled and utilised sustainably.
- Full Text:
- Date Issued: 2019
- Authors: Smetherham, Kyle Norman
- Date: 2019
- Subjects: Hydrogeology -- South Africa -- Makhanda , Water quality -- South Africa -- Makhanda , Groundwater -- Quality -- South Africa -- Makhanda
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/94444 , vital:31045
- Description: In many parts of South Africa, complete allocation of surface water reservoirs together with current drought conditions has led to serious water shortages and subsequent awareness regarding the importance to save water. Grahamstown is no different, with water problems relating to low supply and high demand being compounded by insufficient treatment capacity and aging infrastructure. Groundwater is an alternative water resource that could potentially act as a supplementary and/or emergency supply to the town, reducing the reliability on surface reservoirs. Groundwater however, is a hidden resource and requires an understanding of various aquifer properties and continuous monitoring and modelling so not to permanently disrupt the natural system but rather achieve sustainable management. Grahamstown is situated towards the northern extent of the Cape Fold Belt (CFB) system, within a synclinal fold structure. The local geology forms two local aquifer systems beneath Grahamstown that directly influence both the dynamics and quality of the groundwater. These underground reservoirs are the Witpoort and Dwyka aquifers and can be described as a semi-confined, fractured, quartzitic sandstone aquifer and an unconfined, fractured, tillite aquifer, respectively. Separating these aquifer systems is a shale aquitard, although due to the fractured nature of the rocks in the region there is most likely some groundwater interaction between them. Evaluation of geological formations together with the monitoring of 31 local boreholes presented a valuable conceptualisation of the local system and allowed for the application of methods to estimate recharge. Recharge estimation is one of the most crucial factors when managing aquifer systems as it can be used to determine what proportion of rainfall contributes to the subsurface reservoir and therefore, the sustainable amount that can be extracted. Various methods have been developed to estimate recharge, however due to the uncertainty surrounding groundwater systems, especially fractured aquifers, it was important to apply multiple methods to validate results. The water-table fluctuation (WTF) and cumulative rainfall departure (CRD) are two methods that were used in the present study to determine recharge. These methods rely on water-table changes in boreholes and specifically how they respond to rainfall events. Along with the WTF and CRD methods, a modelling approach was also used to estimate recharge which focused on the dynamics of a natural groundwater outlet, termed the Fairview Spring. This natural spring system is located just outside the main town of Grahamstown, within the Witpoort aquifer system, and is an important water resource to many residents due to poor supply and quality of municipal water. Monitoring the discharge of this spring allowed for the development of a model which attempts to recreate the discharge conditions observed. Along with groundwater recharge, other processes added to the model include evapotranspiration, storage, interflow spring outflow and groundwater outflow. Several different model simulation scenarios provided valuable insight into the greater groundwater dynamics. In terms of groundwater quality, nine borehole samples and one spring sample were analysed for major ions (Ca, Na, K, Cl, Mg, SO4, HCO3), metals (Cu, Fe, Mn) as well as pH and electrical conductivity. Overall electrical conductivity levels and major ion concentrations were lower in the Witpoort aquifer indicating a better groundwater quality compared to that of the Dwyka aquifer. Of the three metals included in the analysis, Mn proved to be the most significant and the highest concentrations were produced for samples that intersected the shale aquitard unit, suggesting that Mn-containing groundwater is drawn from this geological layer. Development of a supplementary and/or emergency groundwater supply requires careful consideration of the geology, quantity, quality, and recharge in the study site. All these aspects were assessed as well as deliberation into the potential infrastructural costs involved. Through conceptualisation of the system; evidence gathered during basic monitoring; and a simple spring model, the current study aimed to explore certain management strategies and recommend potential options going forward. The hidden nature of the resource together with the heterogeneity of fracture networks creates an inevitable uncertainty surrounding the system. Proper development and management of the aquifer can only be achieved if the system is continually monitored, modelled and utilised sustainably.
- Full Text:
- Date Issued: 2019
A mineral systems approach to the development of structural targeting criteria for orogenic gold deposits in the Asankrangwa gold belt of the Kumasi Basin, South-west Ghana
- Authors: Gelber, Benjamin D J
- Date: 2018
- Subjects: Gold ores -- Geology -- Ghana -- Kumasi , Gold mines and mining -- Ghana -- Kumasi , Asankrangwa (Ghana) , Geodynamics -- Ghana -- Kumasi , Prospecting -- Geophysical methods , Orogenic belts -- Ghana -- Kumasi
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63143 , vital:28367
- Description: The Kumasi Basin in South-west Ghana lies at the centre of the best-endowed Paleoproterozoic gold province in the world. The Kumasi Basin and margins of the adjacent volcanic belts are host to six world class gold camps: (1) 62 Moz Obuasi camp, (2) 22 Moz Prestea-Bogoso camp, (3) 11 Moz Asanko Gold Mine camp, (4) 9 Moz Edikan camp, (5) 7 Moz Bibiani camp, (6) 5 Moz Chirano camp, as well as several additional minor gold camps and many more prospects. Cumulatively these camps account for>116 Moz of endowment and contribute to making south-west Ghana the greatest Paleoproterozoic gold province in the world. Gold deposits in the Kumasi Basin are shear zone hosted and mineralisation ranges from disseminated to massive sulphide refractory deposits, to free milling quartz vein style deposits. Structural relationships and age dating indicate that most deposits are genetically related and were formed during a single episode of gold mineralisation during the D4 NNW-SSE crustal shortening deformation event of the Eburnean Orogeny (2125 – 1980 Ma). The understanding of structural controls on mineralisation is critical for exploration success as it allows exploration to focus on areas where these structural controls exist. This study uses a mineral systems approach to understand the relationship between the geodynamic history and structural controls on gold mineralisation in the Kumasi Basin at various scales, and define targeting criteria which can be applied for the purpose of developing predictive exploration models for making new discoveries in the Asanko Gold Mine camp located in the Asankrangwa Belt. The study used a quantitative analysis to establish residual endowment potential in the Asankrangwa Belt, providing the basis for a business model and resulting exploration strategy. Once established, a Fry autocorrelation analysis was applied to identify trends in deposit and camp spatial distribution to which critical geological processes were ascribed. Observed trends were mapped from multi-scale geophysical data sets and through interpretation of existing geophysical structure models, and structural criteria for targeting orogenic gold deposits at the regional and camp scales were developed. Results show that different structural controls on mineralisation act at the regional and camp scale. At the regional scale the distribution of gold camps was found to be controlled by fundamental N-S and NW-SE basement structures with gold camps forming where they intersect NE-SW first and second order structural corridors. At the Asanko Gold Mine camp scale, deposit distribution was found to be related to the intersection between major second order D3 NE-SW shear zones, minor third order D4 NNE-SSW brittle faults, and cryptic NW-SE upward propagating basement structures. In addition to these structural criteria, deposits in the Asanko Gold Mine camp were found to be aligned along a NNE-SSW lineament caused by the interaction between the N-S basement structure and the NE-SW trending Asankrangwa Belt shear corridor.
- Full Text:
- Date Issued: 2018
- Authors: Gelber, Benjamin D J
- Date: 2018
- Subjects: Gold ores -- Geology -- Ghana -- Kumasi , Gold mines and mining -- Ghana -- Kumasi , Asankrangwa (Ghana) , Geodynamics -- Ghana -- Kumasi , Prospecting -- Geophysical methods , Orogenic belts -- Ghana -- Kumasi
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63143 , vital:28367
- Description: The Kumasi Basin in South-west Ghana lies at the centre of the best-endowed Paleoproterozoic gold province in the world. The Kumasi Basin and margins of the adjacent volcanic belts are host to six world class gold camps: (1) 62 Moz Obuasi camp, (2) 22 Moz Prestea-Bogoso camp, (3) 11 Moz Asanko Gold Mine camp, (4) 9 Moz Edikan camp, (5) 7 Moz Bibiani camp, (6) 5 Moz Chirano camp, as well as several additional minor gold camps and many more prospects. Cumulatively these camps account for>116 Moz of endowment and contribute to making south-west Ghana the greatest Paleoproterozoic gold province in the world. Gold deposits in the Kumasi Basin are shear zone hosted and mineralisation ranges from disseminated to massive sulphide refractory deposits, to free milling quartz vein style deposits. Structural relationships and age dating indicate that most deposits are genetically related and were formed during a single episode of gold mineralisation during the D4 NNW-SSE crustal shortening deformation event of the Eburnean Orogeny (2125 – 1980 Ma). The understanding of structural controls on mineralisation is critical for exploration success as it allows exploration to focus on areas where these structural controls exist. This study uses a mineral systems approach to understand the relationship between the geodynamic history and structural controls on gold mineralisation in the Kumasi Basin at various scales, and define targeting criteria which can be applied for the purpose of developing predictive exploration models for making new discoveries in the Asanko Gold Mine camp located in the Asankrangwa Belt. The study used a quantitative analysis to establish residual endowment potential in the Asankrangwa Belt, providing the basis for a business model and resulting exploration strategy. Once established, a Fry autocorrelation analysis was applied to identify trends in deposit and camp spatial distribution to which critical geological processes were ascribed. Observed trends were mapped from multi-scale geophysical data sets and through interpretation of existing geophysical structure models, and structural criteria for targeting orogenic gold deposits at the regional and camp scales were developed. Results show that different structural controls on mineralisation act at the regional and camp scale. At the regional scale the distribution of gold camps was found to be controlled by fundamental N-S and NW-SE basement structures with gold camps forming where they intersect NE-SW first and second order structural corridors. At the Asanko Gold Mine camp scale, deposit distribution was found to be related to the intersection between major second order D3 NE-SW shear zones, minor third order D4 NNE-SSW brittle faults, and cryptic NW-SE upward propagating basement structures. In addition to these structural criteria, deposits in the Asanko Gold Mine camp were found to be aligned along a NNE-SSW lineament caused by the interaction between the N-S basement structure and the NE-SW trending Asankrangwa Belt shear corridor.
- Full Text:
- Date Issued: 2018
A mineralogical, geochemical and metallogenic study of unusual Mn/Na/Ba assemblages at the footwall of conglomeratic iron-ore at farm Langverwacht, Northern Cape Province of South Africa
- Authors: Bursey, James Rodney
- Date: 2018
- Subjects: Iron ores -- Geology -- South Africa -- Northern Cape , Conglomerate -- South Africa -- Northern Cape , Petrology -- South Africa -- Northern Cape , Manganese -- South Africa -- Northern Cape , Sodium -- South Africa -- Northern Cape , Barium -- South Africa -- Northern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62516 , vital:28201
- Description: The Postmasburg Manganese Field (PMF), located in the Northern Cape province of South Africa, plays host to significant deposits of iron and manganese that have been utilized since their discovery in 1922 by Captain L.T. Shone. Further afield, lies the massive high-grade manganese deposit of the Kalahari Manganese Field (KMF), which drew attention away from the PMF after its discovery. These deposits are not limited to iron and manganese ore, but contain significant assemblages of alkali-rich rocks - which is the focus of this study. The existence of alkali-rich assemblages beneath conglomeratic iron-ore on farm Langwervacht, has come under investigation in this study, and in particular, the enrichment of these rocks in Ba, Na and Mn. Petrographic analysis of the clast-supported conglomerate unit (ore-zone), has uncovered the presence of vugs (up to 8mm across) which contain barite, K-feldspar and fluorapatite. In addition to this, the ore-zone of one of the three boreholes contains late carbonate veins (kutnohorite), which travel along Fe-clast boundaries, and exploit clast-fractures and areas of weakness. Further down, within the ‘enriched-zone’ of alkalis, the mineralogy is more diverse - containing elevated concentrations of Ba, Na and Mn. Seventeen distinct minerals containing these three key elements have been identified - along with one solid-solution series in the form of hollandite-coronadite. The existence of minerals such as natrolite, aegirine, albite, banalsite, barite, serandite, celsian and hollandite-coronadite are indicative of hydrothermal activity having influenced these rocks. Bulk-geochemistry was used to compare the major and trace elements of each borehole and the associated units. Both the trace elements and the REE’s from the ore-zone are enriched by an average of 5-10x relative to the BIF standard used - which immediately suggests an influx of elements. Compared to PAAS (Post Archaean Australian Shales), the ore-zone REE’s are slightly depleted, but more importantly the profiles are very similar to that of the Mapedi shales achieved in previous studies. This result points towards a strong shale influence in the ore-zone protolith. Expectedly, many of the enriched-zone trace elements and REE’s show far greater enrichment than what is observed in the ore-zone. Trace and Rare Earth Element profiles between the ore-zone and the enriched-zone are, however, generally correlative, with profiles reflecting similar enrichments and depletions for a given element - even within different rock units. This suggests that the hydrothermal fluid has moved in a general upward direction, reacting with host-rock units, and relinquishing elements carried in solution - wherever conditions have been favourable for the accommodation of these elements. This study has shed light on the relationship between the ore-zone and the enriched-zone, and results suggest that the process of alkali enrichment is not directly related to the process of upgrading of the iron ores. This is due to the extent of the alkali-enrichment below the ore-zone, as well as enrichment factors in some trace elements being superior to that of Fe2O3 in the ore- zone. Hence, both of these zones have both been affected by a later hydrothermal fluid. The source of the fluid is likely a mature basinal brine, of oxidized, alkaline nature - which leached elements (Ba, K, Na, Pb, Ca) from older rocks, and carried them in solution. On a local-scale, this fluid has exploited areas of weakness in the form of fractures, less consolidated conglomeratic material and crosscutting veins. Manganese and iron has been remobilized on a local scale - producing secondary textures and partitioning into phases such as Mn-rich calcite and serandite. Comparisons to other studies in the PMF and KMF have revealed very similar alkali-rich assemblages, bearing many of the same minerals observed in this study - even within more manganiferous deposits. These findings have led to suggestions of a possible regional-scale hydrothermal overprint, which may have imparted a similar geochemical signal over the entire region - with the assistance of faults and unconformities. Of course, proving this is no mean feat, but current work on the source of barium in barite, using Sr isotopes from samples across the region may shed light on the source of at least one key element of these deposits.
- Full Text:
- Date Issued: 2018
- Authors: Bursey, James Rodney
- Date: 2018
- Subjects: Iron ores -- Geology -- South Africa -- Northern Cape , Conglomerate -- South Africa -- Northern Cape , Petrology -- South Africa -- Northern Cape , Manganese -- South Africa -- Northern Cape , Sodium -- South Africa -- Northern Cape , Barium -- South Africa -- Northern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62516 , vital:28201
- Description: The Postmasburg Manganese Field (PMF), located in the Northern Cape province of South Africa, plays host to significant deposits of iron and manganese that have been utilized since their discovery in 1922 by Captain L.T. Shone. Further afield, lies the massive high-grade manganese deposit of the Kalahari Manganese Field (KMF), which drew attention away from the PMF after its discovery. These deposits are not limited to iron and manganese ore, but contain significant assemblages of alkali-rich rocks - which is the focus of this study. The existence of alkali-rich assemblages beneath conglomeratic iron-ore on farm Langwervacht, has come under investigation in this study, and in particular, the enrichment of these rocks in Ba, Na and Mn. Petrographic analysis of the clast-supported conglomerate unit (ore-zone), has uncovered the presence of vugs (up to 8mm across) which contain barite, K-feldspar and fluorapatite. In addition to this, the ore-zone of one of the three boreholes contains late carbonate veins (kutnohorite), which travel along Fe-clast boundaries, and exploit clast-fractures and areas of weakness. Further down, within the ‘enriched-zone’ of alkalis, the mineralogy is more diverse - containing elevated concentrations of Ba, Na and Mn. Seventeen distinct minerals containing these three key elements have been identified - along with one solid-solution series in the form of hollandite-coronadite. The existence of minerals such as natrolite, aegirine, albite, banalsite, barite, serandite, celsian and hollandite-coronadite are indicative of hydrothermal activity having influenced these rocks. Bulk-geochemistry was used to compare the major and trace elements of each borehole and the associated units. Both the trace elements and the REE’s from the ore-zone are enriched by an average of 5-10x relative to the BIF standard used - which immediately suggests an influx of elements. Compared to PAAS (Post Archaean Australian Shales), the ore-zone REE’s are slightly depleted, but more importantly the profiles are very similar to that of the Mapedi shales achieved in previous studies. This result points towards a strong shale influence in the ore-zone protolith. Expectedly, many of the enriched-zone trace elements and REE’s show far greater enrichment than what is observed in the ore-zone. Trace and Rare Earth Element profiles between the ore-zone and the enriched-zone are, however, generally correlative, with profiles reflecting similar enrichments and depletions for a given element - even within different rock units. This suggests that the hydrothermal fluid has moved in a general upward direction, reacting with host-rock units, and relinquishing elements carried in solution - wherever conditions have been favourable for the accommodation of these elements. This study has shed light on the relationship between the ore-zone and the enriched-zone, and results suggest that the process of alkali enrichment is not directly related to the process of upgrading of the iron ores. This is due to the extent of the alkali-enrichment below the ore-zone, as well as enrichment factors in some trace elements being superior to that of Fe2O3 in the ore- zone. Hence, both of these zones have both been affected by a later hydrothermal fluid. The source of the fluid is likely a mature basinal brine, of oxidized, alkaline nature - which leached elements (Ba, K, Na, Pb, Ca) from older rocks, and carried them in solution. On a local-scale, this fluid has exploited areas of weakness in the form of fractures, less consolidated conglomeratic material and crosscutting veins. Manganese and iron has been remobilized on a local scale - producing secondary textures and partitioning into phases such as Mn-rich calcite and serandite. Comparisons to other studies in the PMF and KMF have revealed very similar alkali-rich assemblages, bearing many of the same minerals observed in this study - even within more manganiferous deposits. These findings have led to suggestions of a possible regional-scale hydrothermal overprint, which may have imparted a similar geochemical signal over the entire region - with the assistance of faults and unconformities. Of course, proving this is no mean feat, but current work on the source of barium in barite, using Sr isotopes from samples across the region may shed light on the source of at least one key element of these deposits.
- Full Text:
- Date Issued: 2018
A pilot wide-field VLBI survey of the GOODS-North field
- Authors: Akoto-Danso, Alexander
- Date: 2019
- Subjects: Radio astronomy , Very long baseline interferometry , Radio interometers , Imaging systems in astronomy , Hubble Space Telescope (Spacecraft) -- Observations
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72296 , vital:30027
- Description: Very Long Baseline Interferometry (VLBI) has significant advantages in disentangling active galactic nuclei (AGN) from star formation, particularly at intermediate to high-redshift due to its high angular resolution and insensitivity to dust. Surveys using VLBI arrays are only just becoming practical over wide areas with numerous developments and innovations (such as multi-phase centre techniques) in observation and data analysis techniques. However, fully automated pipelines for VLBI data analysis are based on old software packages and are unable to incorporate new calibration and imaging algorithms. In this work, the researcher developed a pipeline for VLBI data analysis which integrates a recent wide-field imaging algorithm, RFI excision, and a purpose-built source finding algorithm specifically developed for the 64kx64k wide-field VLBI images. The researcher used this novel pipeline to process 6% (~ 9 arcmin2 of the total 160 arcmin2) of the data from the CANDELS GOODS- North extragalactic field at 1.6 GHz. The milli-arcsec scale images have an average rms of a ~ 10 uJy/beam. Forty four (44) candidate sources were detected, most of which are at sub-mJy flux densities, having brightness temperatures and luminosities of >5x105 K and >6x1021 W Hz-1 respectively. This work demonstrates that automated post-processing pipelines for wide-field, uniform sensitivity VLBI surveys are feasible and indeed made more efficient with new software, wide-field imaging algorithms and more purpose-built source- finders. This broadens the discovery space for future wide-field surveys with upcoming arrays such as the African VLBI Network (AVN), MeerKAT and the Square Kilometre Array (SKA).
- Full Text:
- Date Issued: 2019
- Authors: Akoto-Danso, Alexander
- Date: 2019
- Subjects: Radio astronomy , Very long baseline interferometry , Radio interometers , Imaging systems in astronomy , Hubble Space Telescope (Spacecraft) -- Observations
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72296 , vital:30027
- Description: Very Long Baseline Interferometry (VLBI) has significant advantages in disentangling active galactic nuclei (AGN) from star formation, particularly at intermediate to high-redshift due to its high angular resolution and insensitivity to dust. Surveys using VLBI arrays are only just becoming practical over wide areas with numerous developments and innovations (such as multi-phase centre techniques) in observation and data analysis techniques. However, fully automated pipelines for VLBI data analysis are based on old software packages and are unable to incorporate new calibration and imaging algorithms. In this work, the researcher developed a pipeline for VLBI data analysis which integrates a recent wide-field imaging algorithm, RFI excision, and a purpose-built source finding algorithm specifically developed for the 64kx64k wide-field VLBI images. The researcher used this novel pipeline to process 6% (~ 9 arcmin2 of the total 160 arcmin2) of the data from the CANDELS GOODS- North extragalactic field at 1.6 GHz. The milli-arcsec scale images have an average rms of a ~ 10 uJy/beam. Forty four (44) candidate sources were detected, most of which are at sub-mJy flux densities, having brightness temperatures and luminosities of >5x105 K and >6x1021 W Hz-1 respectively. This work demonstrates that automated post-processing pipelines for wide-field, uniform sensitivity VLBI surveys are feasible and indeed made more efficient with new software, wide-field imaging algorithms and more purpose-built source- finders. This broadens the discovery space for future wide-field surveys with upcoming arrays such as the African VLBI Network (AVN), MeerKAT and the Square Kilometre Array (SKA).
- Full Text:
- Date Issued: 2019
A reconciliation study of different resource estimation methods and drill hole spacing as applied to the Langer Heinrich calcrete-hosted uranium deposit, Namibia
- Authors: Baufeldt, Sven
- Date: 2018
- Subjects: Uranium -- Namibia , Calcretes -- Namibia , Carnotite -- Namibia , Uranium mines and mining -- Namibia , Uranium ores -- Geology -- Namibia , Langer-Heinrich Uranium mine
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62527 , vital:28203
- Description: The Langer Heinrich calcrete hosted uranium deposit is situated approximately 90 km to east of the coastal town of Swakopmund in Namibia. It is run by an Australian owned company, Paladin Energy Limited, along with China National Nuclear Corporation (CNNC) who maintain 25% of the shares. Production commenced in 2007 and has been ongoing. Carnotite is the primary and only ore mineral, and the nature of mineralisation within the Langer Heinrich palaeo channel dictates westward-directed continuous open pit mining. Smaller-scale 1micro pits target near-surface, high-grade, lenses toward the east. The high variability in uranium grade over relatively short distances complicates the grade estimation process. This combined with a low uranium price, and a study aimed at optimising of mine production is one of the key drivers for the research presented in this thesis. The efficacy of four resource estimation techniques, commonly used in the mining industry, are investigated by application to variable exploration, infill drilling and grade-control drill pattern spacing. The drill spacing includes regular grids of 50 m x 50 m, 25 m x 25 m and 12,5 m x 12,5 m exploration data. Also included is grade control drill data, drilled on a 4 m x 4 m spacing. The current selective mining unit (SMU) is 4mE x 4mN x 3mRl which is an indication of the minimum dimension whereby the loading equipment can separate ore from waste. The two datasets are processed by four estimation techniques: Inverse Distance Weighting (IDW, squared and cubed), Ordinary Kriging (OK), Multiple Indicator Kriging (MIK) and Conditional Simulation (CS). The two datasets consisted of real-time mining data from pit G1 (micro-pit) in the eastern parts of the mining licence, and pit H1 (continuous larger open pit) in the western area of the palaeo channel. The reconciliation project aims to provide results suitable for devising optimised mining strategies, particularly in future targets where drill spacing can perhaps be improved to provide suitable data with a greater cost saving strategy. Along with the optimal drill spacing or combination thereof, a preferred estimation technique can be suggested and recommended for future operations that involve mining of surficial calcrete-hosted uranium deposits. Results of this study show that 12,5 m x 12,5 m drill spacing provided estimation accuracies similar to that of the narrow 4 m x 4 m grade control spacing (blast hole drilling spacing). The 12,5 m x 12,5m spacing has potential for accurate grade estimations during mining, and could be supplemented by infill downhole radiometric logging on a 4 m x 4 m spacing when 1 Micro pit: Small pits within palaeo channel usually targeted for their near surface high-grade ore necessary. In general, Multiple Indicator Kriging (MIK) provided the most accurate and robust estimations on the wider spaced exploration data and conditional simulation (CS) proved more efficient on the narrow grade control data. These results correspond with current exploration practices for surficial uranium deposits world-wide. Deposit type, therefore complexity and hence SMU sizes play a pivotal role in drill hole planning and estimation accuracies.
- Full Text:
- Date Issued: 2018
- Authors: Baufeldt, Sven
- Date: 2018
- Subjects: Uranium -- Namibia , Calcretes -- Namibia , Carnotite -- Namibia , Uranium mines and mining -- Namibia , Uranium ores -- Geology -- Namibia , Langer-Heinrich Uranium mine
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62527 , vital:28203
- Description: The Langer Heinrich calcrete hosted uranium deposit is situated approximately 90 km to east of the coastal town of Swakopmund in Namibia. It is run by an Australian owned company, Paladin Energy Limited, along with China National Nuclear Corporation (CNNC) who maintain 25% of the shares. Production commenced in 2007 and has been ongoing. Carnotite is the primary and only ore mineral, and the nature of mineralisation within the Langer Heinrich palaeo channel dictates westward-directed continuous open pit mining. Smaller-scale 1micro pits target near-surface, high-grade, lenses toward the east. The high variability in uranium grade over relatively short distances complicates the grade estimation process. This combined with a low uranium price, and a study aimed at optimising of mine production is one of the key drivers for the research presented in this thesis. The efficacy of four resource estimation techniques, commonly used in the mining industry, are investigated by application to variable exploration, infill drilling and grade-control drill pattern spacing. The drill spacing includes regular grids of 50 m x 50 m, 25 m x 25 m and 12,5 m x 12,5 m exploration data. Also included is grade control drill data, drilled on a 4 m x 4 m spacing. The current selective mining unit (SMU) is 4mE x 4mN x 3mRl which is an indication of the minimum dimension whereby the loading equipment can separate ore from waste. The two datasets are processed by four estimation techniques: Inverse Distance Weighting (IDW, squared and cubed), Ordinary Kriging (OK), Multiple Indicator Kriging (MIK) and Conditional Simulation (CS). The two datasets consisted of real-time mining data from pit G1 (micro-pit) in the eastern parts of the mining licence, and pit H1 (continuous larger open pit) in the western area of the palaeo channel. The reconciliation project aims to provide results suitable for devising optimised mining strategies, particularly in future targets where drill spacing can perhaps be improved to provide suitable data with a greater cost saving strategy. Along with the optimal drill spacing or combination thereof, a preferred estimation technique can be suggested and recommended for future operations that involve mining of surficial calcrete-hosted uranium deposits. Results of this study show that 12,5 m x 12,5 m drill spacing provided estimation accuracies similar to that of the narrow 4 m x 4 m grade control spacing (blast hole drilling spacing). The 12,5 m x 12,5m spacing has potential for accurate grade estimations during mining, and could be supplemented by infill downhole radiometric logging on a 4 m x 4 m spacing when 1 Micro pit: Small pits within palaeo channel usually targeted for their near surface high-grade ore necessary. In general, Multiple Indicator Kriging (MIK) provided the most accurate and robust estimations on the wider spaced exploration data and conditional simulation (CS) proved more efficient on the narrow grade control data. These results correspond with current exploration practices for surficial uranium deposits world-wide. Deposit type, therefore complexity and hence SMU sizes play a pivotal role in drill hole planning and estimation accuracies.
- Full Text:
- Date Issued: 2018
A social-ecological investigation into urban domestic gardens and avifauna in medium-sized towns of the Eastern Cape, South Africa
- Authors: Tricam, Shayla
- Date: 2020
- Subjects: Urban ecology (Biology) -- South Africa , Biotic communites -- South Africa , Gardens -- South Africa -- Managemenet , Birds – Ecology – South Africa , Gardening to attract birds -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/145314 , vital:38427
- Description: Urban domestic gardens are an often overlooked component of urban green infrastructure, despite their potential to contribute to the preservation of urban biodiversity. As opposed to public greenspaces, private gardens are individually owned and managed, thus act as social-ecological systems, where the cumulative actions of urban residents can scale up to influence ecological patterns and processes on a larger scale. The diversity of fauna and flora within urban gardens provide a range of ecosystem goods and services, as well as less tangible benefits in the form of recreation, education and culture. However, little is known about the contribution of urban domestic gardens to urban biodiversity and its potential conservation value in South Africa. This study investigated urban domestic gardens along a socio-economic gradient in two medium-sized towns, Grahamstown and Port Alfred in the Eastern Cape, South Africa. This study found distinct differences among urban resident garden management practices as well as the avifauna which were seen within the gardens across the socio-economic gradient. The Garden Management Intensity index was higher within affluent households compared to other socio-economic levels, with subsequent management scores not differing statistically along the gradient. While there was variation within garden management practices, as well as the number of residents who participated in supplementary bird feeding, little variation was seen in the activities which were enjoyed by the residents, indicating numerous benefits the garden environment provides for all urban residents. The bird community composition along the socio-economic gradient displayed patterns directly reflecting the “luxury effect”, where households with a higher socio-economic status had harbour gardens with greater levels of biodiversity. This study showed that affluent gardens displayed far greater diversity, richness and abundance of urban birds. Multivariate analyses confirmed the patterns by highlighting a distinct bird community in the affluent zone, compared to other two socio-economic zones, which housed a second bird community. Furthermore, the main driver of the bird community composition was dominated by vegetation complexity, most notably tree cover within the gardens. Therefore, this study highlighted that patterns of ecological inequality are highly evident in medium-sized towns in South Africa, where older, affluent suburbs households display greater diversity and abundance of birdlife, compared to subsequent socio-economic zones within the study. Prioritisation with regards to the benefits a garden environment brings to urban residents in terms of a connection to nature, access to urban greenery, and relationship to urban wildlife is vital and should be promoted and planned for across all socio-economic zones.
- Full Text:
- Date Issued: 2020
- Authors: Tricam, Shayla
- Date: 2020
- Subjects: Urban ecology (Biology) -- South Africa , Biotic communites -- South Africa , Gardens -- South Africa -- Managemenet , Birds – Ecology – South Africa , Gardening to attract birds -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/145314 , vital:38427
- Description: Urban domestic gardens are an often overlooked component of urban green infrastructure, despite their potential to contribute to the preservation of urban biodiversity. As opposed to public greenspaces, private gardens are individually owned and managed, thus act as social-ecological systems, where the cumulative actions of urban residents can scale up to influence ecological patterns and processes on a larger scale. The diversity of fauna and flora within urban gardens provide a range of ecosystem goods and services, as well as less tangible benefits in the form of recreation, education and culture. However, little is known about the contribution of urban domestic gardens to urban biodiversity and its potential conservation value in South Africa. This study investigated urban domestic gardens along a socio-economic gradient in two medium-sized towns, Grahamstown and Port Alfred in the Eastern Cape, South Africa. This study found distinct differences among urban resident garden management practices as well as the avifauna which were seen within the gardens across the socio-economic gradient. The Garden Management Intensity index was higher within affluent households compared to other socio-economic levels, with subsequent management scores not differing statistically along the gradient. While there was variation within garden management practices, as well as the number of residents who participated in supplementary bird feeding, little variation was seen in the activities which were enjoyed by the residents, indicating numerous benefits the garden environment provides for all urban residents. The bird community composition along the socio-economic gradient displayed patterns directly reflecting the “luxury effect”, where households with a higher socio-economic status had harbour gardens with greater levels of biodiversity. This study showed that affluent gardens displayed far greater diversity, richness and abundance of urban birds. Multivariate analyses confirmed the patterns by highlighting a distinct bird community in the affluent zone, compared to other two socio-economic zones, which housed a second bird community. Furthermore, the main driver of the bird community composition was dominated by vegetation complexity, most notably tree cover within the gardens. Therefore, this study highlighted that patterns of ecological inequality are highly evident in medium-sized towns in South Africa, where older, affluent suburbs households display greater diversity and abundance of birdlife, compared to subsequent socio-economic zones within the study. Prioritisation with regards to the benefits a garden environment brings to urban residents in terms of a connection to nature, access to urban greenery, and relationship to urban wildlife is vital and should be promoted and planned for across all socio-economic zones.
- Full Text:
- Date Issued: 2020
A spatio-temporal, landscape perspective on acacia dealbata invasions and broader land-use and cover changes in the Northern Eastern Cape, South Africa
- Authors: Gouws, Aidan John
- Date: 2018
- Subjects: Acacia -- South Africa -- Eastern Cape , Biological invasions -- South Africa -- Eastern Cape , Plant invasions -- South Africa -- Eastern Cape , Acacia -- Biological control -- South Africa -- Eastern Cape , Eastern Cape (South Africa) -- Rural conditions
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62373 , vital:28161
- Description: Biological invasions are a wicked, social-ecological problem, interacting with numerous components within and across a range of spatio-temporal scales, with the potential to disturb broader socio-economic and ecological systems. Acacia dealbata is an invasive shrub in South Africa, widely naturalised across the grassland biome. Although the deployment of a biocontrol agent on A. dealbata is apparently justified considering its highly invasive and ecologically destructive nature, it should proceed with caution due to the integration of the species into the livelihoods of rural communities. This study sought to understand the nature and extent of the A. dealbata invasion in the northern Eastern Cape. Research was conducted in nine villages in rural Matatiele, Mount Fletcher and Maclear, selected for the pervasiveness of A. dealbata around these villages. A time-series of aerial photographs were systematically classified according to designated A. dealbata and land-use/land cover (LULC) categories in ArcGIS to track changes in the extent and rate of spread of A. dealbata, while standard vegetation surveying techniques were used to determine the current abundance and productivity of A. dealbata in selected areas. A high degree of spatial variability characterised the extent, density and biomass of A. dealbata, as well as the annual rate of spread and biomass production. The growth, productivity and spread of A. dealbata were significantly positive, and relatively few biophysical conditions correlated with the invasion. This was indicative of the broad range of invaded and potentially invasible habitats, suggesting that the extent and abundance of A. dealbata will likely continue to increase, barring deliberate intervention. Broader changes in LULC were also apparent, multidirectional and spatio- temporally variable. Despite a net increase in A. dealbata, the invasion was found to be highly dynamic, with various LULC transitioning to A. dealbata, but in turn A. dealbata transitioning to other LULC. Indeed, biological invasions are dynamic, context-specific phenomena, shaped by the heterogeneity of landscapes. Management interventions to limit or control A. dealbata should therefore consider the spatio-temporal dynamics of invaded landscapes, as well as the local-scale abundance, productivity and biophysical conditions of the area, while taking into consideration the livelihood requirements of the local communities.
- Full Text:
- Date Issued: 2018
- Authors: Gouws, Aidan John
- Date: 2018
- Subjects: Acacia -- South Africa -- Eastern Cape , Biological invasions -- South Africa -- Eastern Cape , Plant invasions -- South Africa -- Eastern Cape , Acacia -- Biological control -- South Africa -- Eastern Cape , Eastern Cape (South Africa) -- Rural conditions
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62373 , vital:28161
- Description: Biological invasions are a wicked, social-ecological problem, interacting with numerous components within and across a range of spatio-temporal scales, with the potential to disturb broader socio-economic and ecological systems. Acacia dealbata is an invasive shrub in South Africa, widely naturalised across the grassland biome. Although the deployment of a biocontrol agent on A. dealbata is apparently justified considering its highly invasive and ecologically destructive nature, it should proceed with caution due to the integration of the species into the livelihoods of rural communities. This study sought to understand the nature and extent of the A. dealbata invasion in the northern Eastern Cape. Research was conducted in nine villages in rural Matatiele, Mount Fletcher and Maclear, selected for the pervasiveness of A. dealbata around these villages. A time-series of aerial photographs were systematically classified according to designated A. dealbata and land-use/land cover (LULC) categories in ArcGIS to track changes in the extent and rate of spread of A. dealbata, while standard vegetation surveying techniques were used to determine the current abundance and productivity of A. dealbata in selected areas. A high degree of spatial variability characterised the extent, density and biomass of A. dealbata, as well as the annual rate of spread and biomass production. The growth, productivity and spread of A. dealbata were significantly positive, and relatively few biophysical conditions correlated with the invasion. This was indicative of the broad range of invaded and potentially invasible habitats, suggesting that the extent and abundance of A. dealbata will likely continue to increase, barring deliberate intervention. Broader changes in LULC were also apparent, multidirectional and spatio- temporally variable. Despite a net increase in A. dealbata, the invasion was found to be highly dynamic, with various LULC transitioning to A. dealbata, but in turn A. dealbata transitioning to other LULC. Indeed, biological invasions are dynamic, context-specific phenomena, shaped by the heterogeneity of landscapes. Management interventions to limit or control A. dealbata should therefore consider the spatio-temporal dynamics of invaded landscapes, as well as the local-scale abundance, productivity and biophysical conditions of the area, while taking into consideration the livelihood requirements of the local communities.
- Full Text:
- Date Issued: 2018
A study of four-dimensional oscillator groups and the associated left-invariant control affine systems
- Authors: Biggs, Rory
- Date: 2012
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/164941 , vital:41186
- Description: Thesis (MSc)--Rhodes University, Faculty of Science, Department of Mathematics, 2012
- Full Text:
- Date Issued: 2012
- Authors: Biggs, Rory
- Date: 2012
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/164941 , vital:41186
- Description: Thesis (MSc)--Rhodes University, Faculty of Science, Department of Mathematics, 2012
- Full Text:
- Date Issued: 2012