Development and evaluation of a web application employing artificial neural networks to facilitate the prediction of antiretroviral drug resistance in patients infected with HIV-1 subtype B
- Authors: Nabatanzi, Margaret
- Date: 2018
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63396 , vital:28406
- Description: Expected release date-April 2019
- Full Text:
- Date Issued: 2018
Development and optimisation of a novel Plasmodium falciparum Hsp90-Hop interaction assay
- Authors: Wambua, Lynn
- Date: 2018
- Subjects: Plasmodium falciparum , Molecular chaperones , Heat shock proteins , Protein-protein interactions , Antimalarials
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62626 , vital:28216
- Description: Protein-protein interactions are involved in a range of disease processes and thus have become the focus of many drug discovery programs. Widespread drug resistance to all currently used antimalarial drugs drives the search for alternative drug targets with novel mechanisms of action that offer new therapeutic options. Molecular chaperones such as heat shock proteins facilitate protein folding, play a role in protein trafficking and prevent protein misfolding in cells under stress. Heat shock protein 90 (Hsp90) is a well-studied chaperone that has been the focus of cancer drug development with moderate success. In Plasmodium falciparum (P. falciparum), heat shock proteins are thought to play a vital role in parasite survival of the physiologically diverse habitats of the parasite lifecycle and because Hsp90 is prominently expressed in P. falciparum, the chaperone is considered a potentially ideal drug target. Hsp90 function in cells is regulated by interactions with co-chaperones, which includes Heat shock protein 70-Heat shock protein 90 organising protein (Hop). As opposed to directly inhibiting Hsp90 activity, targeting Hsp90 interaction with Hop has recently been suggested as an alternative method of Hsp90 inhibition that has not been explored in P. falciparum. The aim of this research project was to demonstrate PfHsp90 and PfHop robustly interact in vitro and to facilitate high-throughput screening of PfHsp90-PfHop inhibitors by developing and optimising a novel plate capture Hsp90-Hop interaction assay. To establish the assay, the respective domains of the proteins that mediate Hsp90-Hop interaction were used (Hsp90 C- terminal domain and Hop TPR2A domain). The human Hsp90 C-terminal domain and glutathione-S-transferase (GST) coding sequences were cloned into pET-28a(+) and murine and P. falciparum TPR2A sequences into pGEX-4T-1 plasmids to enable expression of histidine-tagged and GST fusion proteins, respectively, in Escherichia coli. The P. falciparum Hsp90 C-terminal domain sequence cloned into pET-28a(+) was supplied by GenScript. The constructs were transformed into T7 Express lysYcompetent E. coli cells and subsequent small- scale expression studies showed the recombinant proteins were expressed in a soluble form allowing for subsequent protein purification. Purification of the recombinant proteins was achieved using nickel-NTA and glutathione affinity chromatography for the His-tagged (Hsp90 C-terminal domains and GST) and GST fusion proteins (TPR2A domains), respectively. The purified proteins were used to establish and optimise mammalian and P. falciparum Hsp90- Hop interaction assays on nickel-coated plates by immobilising the His-tagged C-terminal domains on the plates and detecting the binding of the GST-TPR2A domains using a colorimetric GST enzyme assay. Z’-factor values above 0.5 were observed for both assays indicating good separation between the protein interaction signals and negative control background signals, although relatively high background signals were observed for the mammalian interaction due to non-specific binding of murine TPR2A to the plate. Designed human and P. falciparum TPR peptides were observed to be effective inhibitors of the mammalian and P. falciparum interactions, demonstrating the assay’s ability to respond to inhibitor compounds. Comparison of assay performance using GST assay kit reagents and lab- prepared reagents showed the assay was more efficient using lab-prepared reagents, however, lower GST signals were observed when comparing assay performance using a custom prepared Ni-NTA plate to a purchased Ni-NTA plate. The Hsp90-Hop interaction assays were also performed using an alternative assay format in which the GST-TPR2A fusion proteins were immobilised on glutathione-coated plates and binding of the His-tagged C-terminal domains detected with a nickel-horseradish peroxidase (HRP) conjugate and a colorimetric HRP substrate. The assay showed higher interaction signals for the P. falciparum proteins but comparatively low signals for the mammalian proteins. Z’-factor values for the assay were above 0.8 for both protein sets, suggesting this assay format is superior to the GST assay. However, further optimisation of this assay format is required. This study demonstrated direct binding of PfHsp90-PfHop in vitro and established a novel and robust PfHsp90-PfHop interaction assay format that can be used in future screening campaigns.
- Full Text:
- Date Issued: 2018
Development of a computational chemistry scheme for testing the utility of synthetic bacteriochlorin in dye-sensitized solar cells
- Authors: Kota, Ntsika
- Date: 2018
- Subjects: Dye-sensitized solar cells , Computational chemistry , Density functionals , Electronic excitation , Molecular orbitals , Oscillator strengths , Bacteriochlorin
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62327 , vital:28155
- Description: A computational chemistry scheme, based on density functional theory, was developed for in silico testing of a few bacteriochlorin properties relevant to dye-sensitized solar cells. These properties included electronic excitation wavelengths, molecular orbital energy levels, and oscillator strengths among others. Comparisons were made among four species, using computational proxies for electron injection quantum yield and photo-induced current production. The proxy measures for current production (frontier orbital energy level and short circuit current) made consistent, though qualitative, predictions about the ranking of the four dyes. The proxy measures for electron injection quantum yield (change in planar dipole moment and density of states) made less categorical predictions about the ranking. Overall, the scheme singled out one dye as the worst, but made no conclusive predictions about the relative ranking of the other three. There was insufficient data for comparison of the ranking predictions with experiment.
- Full Text:
- Date Issued: 2018
Development of a low-cost bioprinting system for the fabrication of cell-laden sodium alginate hydrogels
- Authors: Honiball, John Robert
- Date: 2018
- Subjects: Regenerative medicine , Tissue engineering , Alginates , Colloids , Three-dimensional printing
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/59204 , vital:27470
- Description: Bioprinting is a rapidly expanding technology with the ability to fabricate in vitro 3D tissues in a layer-by-layer manner to ultimately produce a living tissue which physiologically resembles native in vivo tissue functionality. Unfortunately, large costs associated with commercially available bioprinters severely limit the amount of people/research groups with access to the technology. Here, we investigated the potential for modifying a commercially available RepRap Prusa iteration 3 (i3) three-dimensional (3D) printer, by replacing the traditional plastic-based print-head with various open-source syringe-housed microextrusion print-head units, such that deposition of composite bioinks consisting of cells, biopolymer scaffolds and/or biomolecules may be achieved at a relatively low cost. Using adipose-derived human mesenchymal stromal stem cells (ad-HMSC) induced for adipogenic differentiation, as well as human umbilical vein endothelial cells (HUVEC), the potential for fabricating vascularised adipose tissue was investigated. The non-toxic, inexpensive algal polysaccharide, sodium alginate, was used to test the printability of the system, as well as for investigating the functionality unmodified sodium alginate has for use as a potential bioink in adipose tissue engineering. Cell viability assays, namely WST-1 and fluorescein diacetate (FDA)/propidium iodide (PI) live/dead cell staining, revealed that ad-HMSC were viable after 7 days of culture. However, viability of HUVEC encapsulated hydrogels revealed significantly lower cell viability. Live/dead cell staining revealed that the modified printing system was able to print ad-HMSC/HUVEC co-cocultures with a large degree of cell viability after 1 day of culture. However, after 7 days of culture, the majority of cells were revealed to be dead. Furthermore, due to the lack of mechanical integrity possessed by alginate in a liquid-like state, printing sodium alginate hydrogels in air consistently resulted in deformation of printed constructs. The newly developed 3D printing technique termed freeform reversible embedding of suspended hydrogels (FRESH) was therefore investigated as a means for achieving 3D spatial control of printed hydrogels using the modified system. Printing cell-free sodium alginate hydrogels within gelatin sacrificial support baths allowed for fabricating constructs in a spatially defined manner. However, overprinting and swelling of alginate hydrogels negatively affected the overall printing accuracy. The present study aimed to pave the way for further system modifications and refinements, such that the ultimate goal of low-cost bioprinting may be achieved. Further optimisation of printing parameters, hydrogel characteristics and sterilisation techniques may allow for fabricating viable, physiologically relevant tissues using the modified system developed.
- Full Text:
- Date Issued: 2018
Development of a paediatric-friendly formulation intended for the treatment of multi-drug resistant tuberculosis
- Authors: Nkomo, Jethro
- Date: 2018
- Subjects: Drugs -- Dosage , Pediatrics -- Formulae, receipts, prescriptions Multidrug-resistant tuberculosis -- South Africa Primary health care -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/33660 , vital:32962
- Description: Children suffering from multidrug-resistant tuberculosis (MDR-TB) are treated with at least four drugs a day for at least twenty-four months. Approximately 25 000 - 32 000 children worldwide become infected with MDR-TB each year, yet there is a lack of adequate paediatric MDR-TB options for child-friendly dosage forms for the treatment of the condition. The available options are limited to manipulating different dosage forms intended for adults by means of breaking the tablets or otherwise, to deliver the drugs to children. This challenge that is faced by both health care professionals and caregivers subsequently poses drug quality, efficacy, and safety concerns to children being treated for MDR-TB. The objective of this study was to formulate a paediatric-friendly dosage form for the treatment of MDR-TB in children below the age of eight years. A fixed-dose combination (FDC) in form of a dispersible-tablet that contains two core drugs used in treatment of MDR-TB; levofloxacin and pyrazinamide, was developed. Quality by design principles was employed in developing the product. The systematic procedure ensures that quality is built into the product throughout the manufacturing process. It allows for identification of the critical quality attributes and modification of critical process parameters to lie within desired ranges. Preformulation studies were conducted on the active ingredients to investigate potential interactions and compatibility. Some of the analytical techniques employed in the process included an HPLC assay method that was developed to simultaneously separate levofloxacin and pyrazinamide, differential scanning calorimetry (DSC), infrared spectroscopy (IR), thermogravimetric analysis (TGA), and powder density studies. A direct compression tableting process was selected as the method of choice for product formulation. Active ingredients were blended with the excipients and compressed using tableting equipment to successfully produce FDC fast-disintegrating tablets containing 150 mg of levofloxacin and 300 mg pyrazinamide. The product quality was analysed and optimised using mathematical and statistical techniques such as response surface methodology (RSM) and ANOVA, to meet the required standards recommended by the United States Pharmacopoeia. The FDC dispersible tablet containing levofloxacin and pyrazinamide in the potential treatment of MDR-TB in children was successfully formulated, manufactured and evaluated. The tablet dosage form passed all the relevant quality criteria that governed the scope of this study and disintegrate in approximately 37 seconds when placed in water. It is generally a sizeable challenge to manufacture fixed-dose combination drug products due to physicochemical differences of various drugs, however, with adequate resources researchers may still find a way to formulate more child-friendly dosage forms for MDR-TB. This may lead to improved drug efficacy, reduced safety risks and decreased burden on caregivers and healthcare workers who must administer the treatment.
- Full Text:
- Date Issued: 2018
Discontinuous gully erosion as a mechanism of wetland formation: a case study of the Kompanjiesdrif basin, Kromrivier, Eastern Cape, South Africa
- Authors: Lagesse, Juliette V
- Date: 2018
- Subjects: Arroyos -- South Africa -- Kromme River (Eastern Cape) , Arroyos -- Erosion -- South Africa -- Kromme River (Eastern Cape) , Climatic geomorphology -- South Africa -- Kromme River (Eastern Cape) , Sedimentation and deposition -- South Africa -- Kromme River (Eastern Cape) , Alluvial fans -- South Africa -- Kromme River (Eastern Cape) , Wetland ecology -- South Africa -- Kromme River (Eastern Cape) , Rhizophoraceae , Palmiet (Prionium serratum)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60540 , vital:27791
- Description: The Kompanjiesdrif basin is an unchannelled valley bottom palmiet wetland located near the headwaters of the Kromrivier in the Eastern Cape of South Africa. The wetland itself is underlain by Bokkeveld shales with the bordering mountain ranges comprising more resistant Table Mountain Group quarzitic sandstones. The valley is relatively planar and broad in form over a width of approximately 200 m. None of the existing controls that are considered to lead to valley widening and longitudinal slope reduction are immediately apparent. The basin lies on the Post Africa II erosion surface; with no evidence of a resistant lithology which might act as a local base level, limiting rates of vertical erosion and inducing lateral planing in upstream reaches via a meandering channel. The possible role of sagging of the basin due to long term deep chemical weathering of bedrock is discounted as the lithologies in the basin are sedimentary in origin and thus not susceptible to chemical weathering. The degree to which climate and sea level changes affected rates of incision and subsequent slope reduction is unclear, although their potential influence should be acknowledged. This study examined the geomorphic dynamics as discerned from the sedimentary record and morphology of the wetland basin, which provide a snapshot into the long-term processes which lowered the longitudinal slope and widened this valley. Coring within the wetland to depths of 1 - 3.3 m revealed that the sedimentary fill generally comprised an upward fining sequence, with sand or fine sand at the base, grading into silt and clay and organic material in the upper sections of cores. Occasional instances of multiple fine sand layers were observed in a few of the cores. An increase in the organic content of material from the north to the south side of the wetland and the occurrence of multiple thin layers of sand in the stratigraphy, highlighted the role of the northern tributary alluvial fans in influencing valley form. Sediment from north bank alluvial fans seem to periodically, partially impound the wetland basin. Surveyed transects across the wetland basin along with subsurface coring to the depth to refusal, illustrated a localised increase in longitudinal slope downstream of the nodes of tributary alluvial fan deposits, which impinge on the trunk stream basin. Coupled with the presence of deep, drowned, trench-like features (up to 8 m deep) beneath floating mats of palmiet, which were predominantly free of sedimentary fill and found opposite tributary alluvial fans; confirmed that the northern tributaries play a major role in the structure and geomorphic dynamics of the basin. The trench-like features appeared to be remnants of deep, narrow, discontinuous gullies. Dating of sediment from the base of these features (460-7040 BP) confirmed that they were formed prior to European settlement in the area. Therefore, it is suggested that the localised increase in longitudinal slope, caused by sediment deposition on the alluvial fans, transgresses a geomorphic threshold slope and that gully erosion is thus initiated. The process of repeated gully erosion leads to planing of bedrock and longitudinal slope reduction. Gully erosion forms an integral component of a cycle of deposition and incision referred to as “cut-and-fill”. During each iteration of the cycle of cutting and filling, gullies form in novel locations leading to gradual valley widening. Over geological time scales, the planing of bedrock and resultant valley widening creates a broad planar valley with a very low longitudinal slope; producing conditions suitable for unchannelled valley bottom wetland formation.
- Full Text:
- Date Issued: 2018
Discovery and validation of a CD4 binding aptamer through Crossover SELEX towards the preliminary development of a point-of-care aptasensor for rapid CD4+ T-cell counting
- Authors: Fellows, Tamika
- Date: 2018
- Subjects: Uncatalogued
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63527 , vital:28431
- Description: Expected release date-April 2020
- Full Text:
- Date Issued: 2018
Donor-acceptor effects on the optical limiting properties of BODIPY dyes
- Authors: Hlatshwayo, Zweli Thabiso
- Date: 2018
- Subjects: Dyes and dyeing -- Chemistry , Photosensitizing compounds -- Therapeutic use , Cancer -- Photochemotherapy , Upconversion nanoparticles (UCNPs)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63368 , vital:28397
- Description: The main objectives of the research described in this thesis were firstly to synthesize and characterize a series of structurally related BODIPY dyes that are potentially suitable for use in applications, secondly to conjugate a carboxylic acid substituted BODIPY dye to amine-functionalized upconversion nanoparticles (UCNPs) through an amide bond to enable singlet oxygen production upon irradiation at 978 nm in the biological window for tissue penetration for biomedical applications, and thirdly to compare the nonlinear optical (NLO) properties of various BODIPY dyes to determine whether push-pull effects enhance their utility for optical limiting (OL) applications. Halogenated BODIPY cores with high singlet oxygen quantum yields were prepared, which absorb in the green portion of the visible region and making it difficult to treat deeper skin tumors in the context of photodynamic therapy (PDT) applications. UCNPs generally absorb in the near-infrared (NIR) region (978 nm), and this is advantageous because, this is where absorption by water, cells and tissues is minimized. NaYF4: Yb/Er/Gd UCNPs were synthesized, amine functionalized and successfully conjugated to a halogenated carboxylic acid functionalized BODIPY. This allowed for favorable Förster resonance energy transfer (FRET) since one of the emission wavelengths of the NaYF4: Yb/Er/Gd UCNPs overlaps with the main absorption band of the BODIPY at 540 nm. The conjugate was irradiated at 978 nm, but instability of the BODIPY dye was observed, which made singlet oxygen quantum yield determination impossible. An enhanced singlet oxygen quantum yield value was observed upon irradiation of the conjugate at 540 nm, suggesting that further studies of this system are warranted. The OL properties of BODIPY cores and dyes, which are π-extended at the 3,5-positions with styryl groups, were studied in a series of different organic solvents at 532 nm by using the z-scan technique on a nanosecond timescale. Many of the dyes were used to compare the effects of introducing electron donor and acceptor groups on the OL properties of the dyes. The dipole moments of these dyes were found to correlate with the OL response. The OL results indicate that BODIPY dyes with push-pull properties, which are π-extended at the 3,5-positions with styryl groups, can be considered as viable candidates for use in OL applications. The studies sought to establish the effect of ESA in the triplet manifold as compared to the singlet manifold in as far as the OL response is concerned. The most promising dyes were embedded in polystyrene thin films, and this was found to significantly enhance their OL properties.
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- Date Issued: 2018
Dynamic Mathematical Modeling in Chemical Reaction Networks
- Authors: Gurajena, Simba
- Date: 2018
- Subjects: Chemical reaction
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/11961 , vital:39122
- Description: Many students are familiar with the idea of ecological, financial modeling and modeling in other fields, but modeling in engineering fields is still an area to be looked at. In this discussion the researcher will deal with chemical reaction networks. This will cover areas in chemical reaction, interaction diagrams and the associated models. The discussion will also cover dynamic behaviour of reaction networks. The law of mass action and examples of simple networks will be dealt with. Differential equation models of biochemical and genetic systems are invariantly nonlinear, and as such numerical simulation is used to solve such models. The use of numerical simulation packages will be discussed and separation of timescale and model reduction will form part of the discussion.
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- Date Issued: 2018
Effects of CO2-induced ocean acidification on the early development, growth, survival and skeletogenesis of the estuarine-dependant sciaenid Argyrosomus japonicus
- Authors: Erasmus, Bernard
- Date: 2018
- Subjects: Argyrosomus , Argyrosomus -- Growth , Argyrosomus -- Mortality , Argyrosomus -- Ecology , Argyrosomus -- Physiology , Ocean acidification , Marine ecology -- South Africa , Carbon dioxide -- Physiological effect
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/60585 , vital:27799
- Description: Although it is increasingly accepted that ocean acidification poses a considerable threat to marine organisms, little is known about the likely response of fishes to this phenomenon. While initial research concluded that adult fishes may be tolerant to changes predicted in the next 300 years, the response of early life stages to end-of-century CO2 levels (~ 1100 µatm according to the IPCC RCP 8.5) remains unclear. To date, literature on the early growth and survival of fishes has yielded conflicting results, suggesting that vulnerability may be species dependant. The paucity of ocean acidification research on fishes is particularly evident when one considers larval skeletogenesis, with no robust studies on its impacts on bone and cartilage development. This study addresses the early life embryogenesis, hatching success, growth, skeletogenesis and survival of an estuarine-dependant species. Dusky kob (Argyrosomus japonicus) were reared in a control (pCO2 = 327.50 ± 80.07 qatm at pH 8.15), intermediate (pCO2 477.40 ± 59.46 qatm at pH 8.03) and high pCO2 treatment (pCO2 910.20 ± 136.45 qatm at pH 7.78) from egg to 29 days post-hatch (dph). Sixty individuals from each treatment were sacrificed at the egg stage and at 2, 6, 13, 18, 21 and 26 dph, measured and stained using an acid-free double- staining solution to prevent the deterioration of calcified matrices in fragile larval skeletons. The proportion of bone and cartilage was quantified at each stage using a novel pixel-counting method. Growth and skeletal development were identical between treatments until the onset of metamorphosis (21 dph). However, from the metamorphosis stage, the growth and skeletal development rate was significantly faster in the intermediate treatment and significantly slower in the high treatment when compared to the control treatment. By 26 dph, A. japonicus reared in high pCO2 were, on average, 47.2% smaller than the control treatment, and the relative proportion of bone in the body was 45.3% lower in the high pCO2 treatment when compared with the control. In addition, none of the fish in the high pCO2 treatment survived after 26 dph. It appears that the combination of the increased energy requirements during metamorphosis and the increased energy cost associated with acid-base regulation may account for reduced growth, skeletogenesis and poor survival in high pCO2. Regardless of the driver, the results of this study suggest that the pCO2 levels predicted for the end of the century may have negative effects on the growth, skeletal development, and survival during metamorphosis.
- Full Text:
- Date Issued: 2018
Effects of polymerisation conditions on the mechanism and properties of furfuryl alcohol resin
- Authors: Iroegbu, Austine Ofondu
- Date: 2018
- Subjects: Polymerization , Polyethylene
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30386 , vital:30937
- Description: The purpose of this study was to do a comparative investigation on the acid- and heat catalysed polymerisation and resinification of furfuryl alcohol and the effects of these polymerisation conditions on the mechanism, morphology, molecular weight and thermal properties of the polyfurfuryl alcohol resins. The formation of furfuryl alcohol polymers was confirmed using size exclusion chromatography (SEC); the synthesised polymer resins were investigated using Fourier transform infrared spectroscopy (FTIR,), scanning electron microscopy (SEM) and Thermogravimetric analysis (TGA). The effects of polymerisation conditions on the mechanism of polyfurfuryl alcohol polymerisation was a major focus of this study. The obtained results confirm that the surface topology, mechanism of polymerisation, thermal behaviour and molecular weights of polyfurfuryl alcohol polymer resins are dependent on the polymerisation condition. The acid and heat catalysed polyfurfuryl alcohol resin polymers presented interesting and promising results.
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- Date Issued: 2018
Effects of production systems and canola meal supplementation on carcass and meat quality characteristics of spent laying hens
- Authors: Semwogerere, Farouk
- Date: 2018
- Subjects: Broilers (Chickens) -- Feeding and feeds Chickens -- Feeding and feeds Chicken industry -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9242 , vital:34309
- Description: This study evaluated the carcass and meat quality traits of spent laying hens as influenced by production systems (conventional cages and free range) and the inclusion/exclusion of canola meal in their diets. A total of 30 free range and 60 battery cage reared Lohmann Brown-Elite spent laying hens were obtained from a commercial egg producer. The 30 free range hens (53 weeks of age) and 30 of the caged hens (40 weeks of age) were fed a conventional diet, while the remaining 30 caged hens (48 weeks of age) were fed a diet supplemented with canola meal (20 percent). Carcass, portion and organ weights were determined. Physical attributes and proximate composition were analyzed for, with additional fatty acids and sensory profiles being determined for the effects of canola meal inclusion in the diet. Caged hens had heavier (P ≤ 0.05) warm and cold carcasses, thigh, wing and feet compared to free range hens. The percentages of the breast (26.1 ± 0.51 vs. 28.3 ± 0.28), drum, breast bones, breast thaw and cooking losses and thigh cooking loss were lower (P ≤ 0.05) for caged hens than for free range hens. Free range hens had heavier (P ≤ 0.05) gizzards (33.9 ± 1.04 vs. 30.5 ± 0.73) and bones and a lower (P ≤ 0.05) breast meat percentage (47.3 ± 0.94 vs. 51.7 ± 1.35). Meat redness (a*) (0.54 ± 0.222 vs. 1.40 ± 0.135) and hue angle value, skin redness (a*), breast and thigh, Warner-Bratzler shear force (WBSF) values (breast: 12.37 ± 0.411 vs. 17.10 ± 0.751, thigh: 29.68 ± 0.306 vs. 39.75 ± 0.826), breast moisture and thigh ash content were lower (P ≤ 0.05) for caged hens than free range hens. Caged hens had higher (P ≤ 0.05) thigh thaw loss and breast ash content than free range hens. Canola-fed hens had higher (P ≤ 0.05) drum percentages, breast bone weights and percentages, with lower (P ≤ 0.05) thigh and breast meat percentages. Canola-fed hens had lower (P ≤ 0.05) thaw losses, skin yellowness (b*) and Chroma values, breast fat content with higher cooking losses, skin redness (a*) and hue angle value, as well as breast WBSF (12.37 ± 0.411 vs. 15.43 ± 0.600). Palmitic acid, stearic acid, heneicosanoic acid acid, palmitoleic acid, saturated fatty acids (SFA) (34.0 ± 0.56 vs. 38.7 ± 0.71), n-6:n-3 polyunsaturated fatty acids (PUFA) ratio (5.5 ± 0.13 vs. 7.2 ± 0.28), atherogenic index (IA), thrombogenic index (IT), delta-5 desaturase (D5D, elongase index and thiosterase index were lower (P ≤ 0.05) for canola-fed hen breast meat. Breast meat from conventionally fed hens had lower (P ≤ 0.05) myristic acid, lignoceric acid, nervonic acid, alpha-linolenic acid (ALA), docosahexaenoic acid (DHA), PUFA:SFA ratio (0.7 ± 0.05 vs. 0.9 ± 0.02), n-3 PUFA (3.4 ± 0.31 vs. 5.1 ± 0.17), hypocholesterolemic:Hypercholesterolaemic (h/H), stearoyl-CoA desaturase 16 (SCD16) and stearoyl-CoA desaturase 18 (SCD18). The breast meat from conventionally fed hens had lower (P ≤ 0.05) metallic flavor than that from canola-fed hens. Strong positive correlations were observed for overall aroma with chicken (r = 0.965, P < 0.001) and brothy aroma (r = 0.827, P < 0.001); overall aroma with overall flavor (r = 0.680, P < 0.001), chicken flavor (r = 0.668, P < 0.001) and brothy flavor (r = 0.548, P = 0.006); initial juiciness with sustained juiciness (r = 0.771, P < 0.001) and tenderness (r = 0.537, P = 0.007); sustained juiciness with tenderness (r = 0.790, P < 0.001) and chewiness with residue (r = 0.783, P < 0.001). Whilst strong negative correlations were observed for: sustained juiciness with chewiness (r = -0.655, P = 0.001) and residue (r = 0.783, P < 0.001) and for tenderness with chewiness (r = 0.845, P < 0.001) and residue (r = -0.855, P < 0.001). Results of this study highlight that a free range production system when compared to a conventional cage system increased undesirable carcass and physical meat traits of spent laying hens. On the other hand, canola meal inclusion incorporates beneficial health aspects without affecting the sensory profile of meat derived from spent laying hens, both groups of hens being reared in battery cage system. Spent laying hen breasts can be consumed as a functional food (especially canolafed) since the fat content and composition was observed to be close to that which is recommended for a healthy diet.
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- Date Issued: 2018
Electrospinning of carbon nanofibers for investigating the behaviour of lead electrodeposits on the carbon surface
- Authors: Madikane, Zipporah Kayakazi
- Date: 2018
- Subjects: Materials science , Nanotechnology Nanostructured materials
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/31622 , vital:31629
- Description: Over the years, the lead acid battery’s performance in modern vehicles has improved considerably to adapt to the new demands of vehicle electronics and start-stop applications. Although vehicles are valuable for commuting, their high volume of usage has resulted in an increase of fuel prices and emitted carbon dioxide (CO2). Due to the drastic global warming concerns, vehicle manufactures have been pressured into developing a variety of hybrid electric vehicles (HEV) that would reduce their fuel consumption and thereby reduced CO2 emission. The HEVs construction requires the implementation of advanced battery systems that operate under high rate partial state of charge (HRPSoC) conditions. During battery’s discharge, the Pb contained on the negative plate is oxidised to insulating PbSO4 crystals. When the battery is charged, the PbSO4 is reduced back to Pb. With prolonged use at HRPSoC, the battery undergoes an irreversible process wherein small PbSO4 crystallites dissolve and precipitate into large passivating PbSO4 crystals that accumulate as a dense layer on the surface of the negative plate. This layer restricts the diffusion of the H2SO4 electrolyte into the reaction sites for further reactions, resulting in the battery to fail prematurely. Research has shown that the inclusion of appropriate carbon materials on the negative active material (NAM) improves the performance of the batteries in HRPSoC cycling. This study looked at the making of some of the carbon-based additives by using relatively cheap materials such as polyvinyl alcohol (PVA) polymer with a sucrose blend in ratios of 75:25, 50:50 and 25:75, respectively. The blended materials were electrospun into PVA/Sucrose nanofibers. These were further stabilised by iodine and carbonised at 500 °C in a tube furnace. The properties of the carbon fibres were investigated by a number of analytical techniques such as TGA, DSC, XRD, BET, FTIR and SEM. The obtained carbon fibre surfaces were further electroplated with Pb in order to investigate the chemical bonding, the relationship between the carbon-based material interface and the Pb was investigated by SEM and CV techniques. The results of the study demonstrated that the varied ratios of the PVA/Sucrose nanofibers influenced the differences in their respective chemical and physical properties. Thermal analysis demonstrated that at approximately 500 °C, the final residue of the PVA/Sucrose nanofibers decreased as the sucrose content decreased. iii Carbonisation of the nanofibers was confirmed by the structural changes corresponding to the disappearance of the major bonds of PVA and sucrose materials, as well as by the appearance of C=C stretches. Carbonisation was also confirmed by the XRD diffractogram that demonstrated two broad amorphous peaks that corresponded to the planes of the graphite structure. The broadness of the peaks confirmed the amorphous nature of the carbon fibres. The morphological studies demonstrated that upon blending PVA with increasing quantities of sucrose, the uniformity of the fibres was altered into beaded fibrous structures with large diameters due to the increased viscosity of the electrospinning solution. The behaviour of the Pb deposits on the carbon surfaces was influenced by the high quantity of PVA present on the blend and the fibrous structure of the carbonised material. The Pb had high affinity towards the fibrous carbon derived from 75:25 as it deposited widely across the surface. Whereas, the absence of Pb deposits on the surface of the carbon derived from the 25:75 ratio was an indication that the high sucrose content and the bulky non-fibrous structure hindered the electrodeposition. The electrochemical study findings demonstrated that the bare Pb electrode had two distinct current peaks corresponding to the anodic (discharge) and cathodic (charge) reactions of Pb/PbSO4. Upon the inclusion of the electrospun carbon materials on the Pb electrode, the intensities of the anodic and cathodic peaks were reduced. Implying that none of the carbon materials enhanced the electrochemical redox reactions of the Pb/PbSO4 couple in the H2SO4 electrolyte.
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- Date Issued: 2018
Energy maximisation strategies of different African herbivores in a fire dominated and nutrient poor grassland ecosystem
- Authors: Brooke, Christopher
- Date: 2018
- Subjects: Grassland ecology -- South Africa -- Eastern Cape , Animals -- Food -- South Africa -- Eastern Cape , Herbivores -- Ecology -- South Africa -- Eastern Cape , Fire ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21961 , vital:29807
- Description: Fire and herbivory are both major drivers in grassland ecosystems throughout the world. Although these two driving forces act independently from one another the relationship between fire and herbivory may be more significant than either acting on their own. Heterogeneity within the landscape as a result of fire results in herbivores having to adapt their behaviour in space and time. My research focussed on 1) characterising the fire regime on Mkambati Nature Reserve (hereafter Mkambati) and 2) determining the foraging choices and energy maximisation principles displayed by herbivores in relation to the biomass of vegetation and post fire vegetation age. Fire regimes were characterised between 2007-2016 in the low nutrient coastal grasslands of Mkambati in terms of fire season, seasonality of fire-prone weather conditions, fire return interval (FRI) and influence of poaching-related ignitions. Based on these results I then assessed foraging choices in terms of energy maximisation of four large herbivore species. I explored what energy maximisation strategy was employed, i.e. maximisation of daily digestible energy (DDE) (recently burnt low biomass vegetation) or instantaneous digestible energy (IDE) (older high biomass vegetation), by herbivore species with different morpho-physiological traits. Common reedbuck (Redunca arundinum), red hartebeest (Alcelaphus buselaphus subsp. caama), zebra (Equus quagga) and eland (Tragelaphus oryx subsp. oryx) were fitted with GPS satellite tracking collars, and hourly GPS locations (observed) were taken between 2008 and 2016. Using mixed effects models, I compared observed and an associated set of random locations to determine the energy maximisation strategy employed by each species. Our results indicated that fires were concentrated in winter when monthly fire danger weather (FDI) was highest. The mean FRI at Mkambati was <3 years, but varied according to vegetation type, and whether censoring (for open ended FRIs) was applied to estimate mean FRIs. Poachers, with the intention of attracting ungulates, are an important source of ignition at Mkambati. Accordingly FRIs were shorter (approximately 2 years) in areas within 3 km of likely poacher entry points. Although all fires recorded at Mkambati during the study period were of anthropogenic origin, mean FRI still fell within the natural range reported for interior grasslands in South Africa. Based on these findings, underpinned by the fire regime information, I showed that red hartebeest and zebra maximised DDE inside and outside of fire seasons and frequently foraged in low biomass recently burnt grasslands. Eland generally favoured areas where they could maximise IDE outside of the fire season, however during the fire season they switched strategy to maximise DDE. Reedbuck did not maximise IDE or DDE at the same scale (patch scale) as the other species, but at a landscape (broader) scale they maximised both IDE and DDE. Through this research I have shown how regular fire affects the foraging and energy maximisation behaviour of large African herbivores and how morpho-physiological traits affect these decisions. In response to these results I recommend that the management of Mkambati implement a focused monitoring program comparing the frequently and less frequently burnt areas of the reserve in order to understand the complex effects of anthropogenic fire and its subsequent effects on the biota of Mkambati.
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- Date Issued: 2018
Environmental management of wetlands on an urban periphery: the case of Bay West
- Authors: Domoney, Nicola Leah
- Date: 2018
- Subjects: Wetland management -- South Africa -- Nelson Mandela Bay Municipality , Remote sensing Chlorophyll
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30854 , vital:31183
- Description: South Africa is a semi-arid country and thus depends on sound management of its water resources. Wetlands, despite their importance to water resource storage and water quality, among their other ecological and social significance, remain the most threatened of South Africa’s ecosystems. One of their greatest threats is encroachment by urbanisation. This occurs because wetlands, and especially ephemeral urban periphery wetlands, are overlooked. This study’s main objective was to determine the water quality and health of the wetlands adjacent to the newly established Bay West development on the western urban periphery of Nelson Mandela Bay. Wetlands are difficult to access and it is time-consuming to assess them. Remote sensing, however, overcomes this challenge and is cost-effective and time-considerate. It was the aim of this study to assess the health of the peri-urban wetlands on the Bay West periphery in order to formulate an appropriate environmental management plan, and remote sensing was tested as an effective method for wetland health management. It was found that the wetlands closer to the urban residential area (Sherwood suburb) were far more impacted than the wetlands nearer to Bay West Mall. Wetlands Six to Eight were higher in all parameters of pH, total dissolved solutes (TDS), salinity, conductivity and chlorophyll a concentration than Wetlands One to Five located further away from the urban area. A correlation with distance away from the urban area found a strong inverse relationship with between distance and the water quality factor, yielding a correlation coefficient of (<-0.7) in 2017 and (<-0.9) in 2018 with regard to TDS, salinity and conductivity. This, therefore, suggests that the wetlands’ health deteriorates towards the urban area. TDS, salinity, pH and conductivity correlate highly with chlorophyll a concentration at (>0.70). There was significant difference in pH in the year 2017 between the Bay West wetlands and the reference wetland (p<0.05; df=19; f= 3.56; n=3) and in 2018 (p<0.01; df=22; f= 8.90; n=3). No significant difference was found between the wetlands for dissolved oxygen. TDS between the wetlands was found to be significantly different in the year 2017 (p<0.01; df=23; f= 44.16; n=3) and 2018 (p<0.05; df=22; f=2.62; n=3), where conductivity and salinity returned the same p value for 2017 and 2018 as TDS respectively. There was a significant difference in chlorophyll a between the Bay West wetlands in 2017 (p<0.05; df=20; f=3.29; n=3) and Wetland Seven measured eutrophic at 22.45 mg/L-1. Remote sensing red band values and the field sample absorption values were highly correlated at R2= 0.5. Chlorophyll a content of wetland water correlated with NDVI data at R2= 0.6. Thus, remote sensing proved to be a successful estimator for wetlands health analysis and a proxy for wetland management. These results yielded an environmental management plan where monitoring water quality via chlorophyll a indicated health levels of the wetlands via trophic state.
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- Date Issued: 2018
Exploration potential for copperbelt - style mineralisation in NW Province, Zambia; soil geochemistry as a targeting tool
- Authors: Mwamba, John
- Date: 2018
- Subjects: Mineralogy -- Zambia -- Copperbelt Province , River sediments -- Zambia -- Copperbelt Province , Soils -- Sampling -- Zambia -- Copperbelt Province , Prospecting -- Geophysical methods , Landsat satellites , Lufilian fold belt
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62538 , vital:28204
- Description: The NW Province of Zambia is fast becoming a major significant mining district challenging to usurp the economic importance of the traditional Copperbelt Province that has been mined for nearly a century. With latest developments at Kansanshi, Lumwana and Kalumbila mines exploration efforts in the search for Copperbelt style mineralisation have doubled up in the province in recent months. Traditional methods of stream sediment and soil sampling, geophysics, aerial photo and Landsat imagery interpretations have been employed in exploration targeting campaigns. This thesis asks the question: Can we use the Copperbelt geochemical footprint as a proxy to finding new copper deposits in NW Province? The challenge faced in such studies is that few geochemical datasets for old mines exist and the little that does is proprietary information. In some mines this dataset is entirely nonexistent - at least not in the public domain. Attempting to run orientation geochemical trials on such mines is not feasible at present due to maturity of mining and the levels of contamination of the natural environment that have occurred over several decades of mining. However, in tackling this question few Copperbelt geochemical datasets from Baluba, Nkana, Mimbula, Nchanga, Bwana Mkubwa, Mufulira West and Lufubu North were used. The findings presented in this report are that for Copperbelt style mineralisation Cu/Co, Cu/Ni, Cu/Ag ratios in soil geochemistry data should be in the ranges of 0.25 to 0.48 provided geochemical studies occurred in residual soils. These ratios hold true for sediment hosted copper-cobalt mineralisation hosted at various stratigraphic levels within the Roan Group or in upper levels elsewhere on the Central African Copperbelt. Geochemical dataset for the study areas presented in this report show that the soil geochemistry footprint in the province is not dissimilar to the soil geochemistry footprint of the traditional Copperbelt Province. This means there is great potential for finding Copperbelt style mineralisation in the province and other styles of mineralisation in which copper is associated with cobalt, lead, zinc, nickel, vanadium and molybdenum. The areas of study also possess requisite geological factors that are conducive to hosting Copperbelt style deposits. These factors include: favourable structural traps with similar trends to existing mines in the province, geophysical characteristics comparable to other deposits in the province, right geological package known to host multi-type deposits in the Katangan stratigraphic sequence, and similar geochemical footprints observed on other deposits within the Lufilian fold belt. For this reason, geochemical dataset must not be looked at in isolation but should be treated in considerations with other factors and geological environment.
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- Date Issued: 2018
Facilities management awareness amongst high school learners and teachers in the Soutpansberg west circuit in the Limpopo province
- Authors: Nephawe, Tshilidzi
- Date: 2018
- Subjects: Facility management -- South Africa -- Limpopo , Facility management -- Research Construction industry -- Forecasting -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/32894 , vital:32395
- Description: The Facilities Management (FM) profession in South Africa needs to start recognising and acknowledging the importance of formal education amongst the population. The question of FM being a career normally receives shallow responses; and it sometimes leads to a contradiction. The FM profession seems to be taking an ‘as it is’ approach, when it comes to the establishment of an education agenda; since there is no clear evidence regarding alignment and transition from high school to tertiary level, and then to the workplace. The level of awareness plays a significant role in all elements of FM practice. Even at the present moment, FM is still not a career of choice, meaning that anyone can be a facilities manager. There are parts of South Africa where the population is unaware of FM. Some had never heard about it at all. It was important to establish the level of awareness: with the intention of developing a critical awareness of FM as a career path amongst high school learners and teachers in the Soutpansberg West Circuit, in order to inform them of a possible career choice in FM. In this study, a mixed-model research methodology was used, which combines both qualitative and quantitative research approaches. A population was identified from which a sample of 14 high schools, 87 high school teachers and 2 299 high school learners was drawn. A ‘fit for purpose’ questionnaire was distributed to the participants. The data were collected by means of a survey. It focused on a survey; and it used a questionnaire that was composed of multiple closed-ended or quantitative-type items, as well as several open-ended or qualitative-type items. Thematic analysis was used for the open-ended questions. This study has successfully managed to determine the awareness levels of high school learners and teachers relating to FM, the need for FM awareness in high schools; and whether there were high school learners who wished to become facilities managers in the future. FM companies, tertiary institutions, and high schools must collaborate in the development of the FM career-guidance programme, in order to increase awareness amongst the teachers and learners. There were students who indicated that they were interested in FM as their career of choice.
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- Date Issued: 2018
Factors influencing estuarine and coastal connectivity of an estuarine-dependent fishery species, Pomadasys commersonnii (Haemulidae)
- Authors: Dames, Michael Henri
- Date: 2018
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/62307 , vital:28153
- Description: Expected release date-April 2019
- Full Text:
- Date Issued: 2018
Farmers' perceptions of insect pests in the Eastern Cape maize-based cropping systems and the effects of crop residue management on insect pest populations
- Authors: Kadango, Tendayi Lovemore
- Date: 2018
- Subjects: Cropping systems Crop residue management Corn -- Diseases and pests
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/6202 , vital:29507
- Description: Maize (Zea mays L.) is one of the most important crops in South Africa that is cultivated for food, feed and as a cash crop. Maize in the Eastern Cape is typically grown for consumption and the Province is one of the least producers owing to small landholdings, poor production conditions and pests. This study investigated: (i) the different maize cropping systems smallholder farmers practice in the Eastern Cape (EC), (ii) the major maize insect pests within the identified cropping systems, (iii) the perceptions of Eastern Cape smallholder maize farmers on the effects of insect pests, and (iv) the effects of crop residues on insect pests’ population dynamics. Four major cropping systems namely: maize sole cropping without rotations by government sponsored farmers (GCP) (94 percent), maize intercropping without rotations by independent farmers (IF) (79 percent), maize sole cropping without rotations by IF (67 percent) and maize intercropping without rotations by GCP (61 percent) were identified. The choice of a cropping system by the smallholder farmers was significantly influenced by source of sponsorship, the difference in their district localities, tenure system, availability of inputs and farming equipment, percentage of farmland farmers allocate to maize, maize varieties, farming experience, fallow operations and access to irrigation facilities. The major constraints faced by the farmers in maize production are the attack by insect pests, weeds competition, drought, the lack of fencing around the fields and destruction by mammals. The major insect pests identified were stalk borers (Busseola fusca, Chilo partellus), cutworms (Agrotis spp.), aphids (Rhopalosiphum maidis), bollworms (Helicoverpa armigera) and weevils (Sitophylus spp.). The most popular control measures employed were the use of GM maize and pesticides. Results from the field trial showed that field crickets were the major ground dwelling insect pests observed followed by bollworms and cutworms. However, there were no significant influence of residue retention on the insects’ diversity indices, richness, and evenness. Above ground insects sampling revealed the domination by four major insects namely, cutworms, maize stalk borer, bollworms, and spotted stalk borer. Residue management significantly influenced the infestation by spotted stalk borer only on maize plots. However, the general trend was that there was less infestation by the insects in plots where residues were retained than the ones with residue removed. Results from the study indicate that government sponsorship is significantly influencing the maize cropping systems of the smallholder farmers of the Eastern Cape.
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- Date Issued: 2018
Formulation, characterisation and optimisation of self-nanoemulsifying drug delivery systems (SNEDDS) loaded with artemether and lumefantrine
- Authors: Mudyahoto, Tsitsi
- Date: 2018
- Subjects: Uncatalogued
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63503 , vital:28422
- Description: Expected release date-April 2020
- Full Text:
- Date Issued: 2018