Investigating the chaperone properties of a novel heat shock protein, Hsp70. c, from Trypanosoma brucei
- Burger, Adélle, Ludewig, Michael H, Boshoff, Aileen
- Authors: Burger, Adélle , Ludewig, Michael H , Boshoff, Aileen
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/431155 , vital:72749 , xlink:href="https://doi.org/10.1155/2014/172582"
- Description: The neglected tropical disease, African Trypanosomiasis, is fatal and has a crippling impact on economic development. Heat shock protein 70 (Hsp70) is an important molecular chaperone that is expressed in response to stress and Hsp40 acts as its co-chaperone. These proteins play a wide range of roles in the cell and they are required to assist the parasite as it moves from a cold blooded insect vector to a warm blooded mammalian host. A novel cytosolic Hsp70, from Trypanosoma brucei, TbHsp70.c, contains an acidic substrate binding domain and lacks the C-terminal EEVD motif.The ability of a cytosolic Hsp40 from Trypanosoma brucei J protein 2, Tbj2, to function as a co-chaperone of TbHsp70.c was investigated.The main objective was to functionally characterize TbHsp70.c to further expand our knowledge of parasite biology. TbHsp70.c and Tbj2 were heterologously expressed and purified and both proteins displayed the ability to suppress aggregation of thermolabile MDH and chemically denatured rhodanese. ATPase assays revealed a 2.8-fold stimulation of the ATPase activity of TbHsp70.c by Tbj2. TbHsp70.c and Tbj2 both demonstrated chaperone activity and Tbj2 functions as a co-chaperone of TbHsp70.c.In vivo heat stress experiments indicated upregulation of the expression levels of TbHsp70.c.
- Full Text:
- Date Issued: 2014
- Authors: Burger, Adélle , Ludewig, Michael H , Boshoff, Aileen
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/431155 , vital:72749 , xlink:href="https://doi.org/10.1155/2014/172582"
- Description: The neglected tropical disease, African Trypanosomiasis, is fatal and has a crippling impact on economic development. Heat shock protein 70 (Hsp70) is an important molecular chaperone that is expressed in response to stress and Hsp40 acts as its co-chaperone. These proteins play a wide range of roles in the cell and they are required to assist the parasite as it moves from a cold blooded insect vector to a warm blooded mammalian host. A novel cytosolic Hsp70, from Trypanosoma brucei, TbHsp70.c, contains an acidic substrate binding domain and lacks the C-terminal EEVD motif.The ability of a cytosolic Hsp40 from Trypanosoma brucei J protein 2, Tbj2, to function as a co-chaperone of TbHsp70.c was investigated.The main objective was to functionally characterize TbHsp70.c to further expand our knowledge of parasite biology. TbHsp70.c and Tbj2 were heterologously expressed and purified and both proteins displayed the ability to suppress aggregation of thermolabile MDH and chemically denatured rhodanese. ATPase assays revealed a 2.8-fold stimulation of the ATPase activity of TbHsp70.c by Tbj2. TbHsp70.c and Tbj2 both demonstrated chaperone activity and Tbj2 functions as a co-chaperone of TbHsp70.c.In vivo heat stress experiments indicated upregulation of the expression levels of TbHsp70.c.
- Full Text:
- Date Issued: 2014
Investigation of the Chemical Nature and Species Distribution of Nitromethane in Inert Solvents
- Authors: Namntu, Vuyokozi
- Date: 2014
- Language: English
- Type: Masters theses , text
- Identifier: http://hdl.handle.net/11260/2964 , vital:43106
- Description: The solution behaviour of nitromethane in inert solvents; carbon tetrachloride, n-hexane and cyclohexane is rigorously investigated using mainly spectroscopic and computational techniques. Analysis of Proton (1H) and Carbon 13 (13C) NMR spectral data reveal that nitromethane solutions in inert solvents form associated species to varying degrees of complexity. A cyclic dimer is postulated as the energetically most favourable chemical species at low solute concentrations. Infrared spectra studied in the overtone region and UV-Visible spectral data confirm the presence of multiple associated chemical species at different solute concentrations with the degree of association progressively increasing with increase in concentration of the solute. The species involved in the association of nitromethane is formulated as (CH3NO2)2n, where n=0, 1,2 and 3, for the monomer, dimer and higher order polymers respectively. Line-shape analysis of both infrared and UV spectra show the onset of a plateau at molar solute concentrations of 0.616 molar described by the point of inflection in the absorption curve at around 0.055 cm-1 , in the second overtone. , Thesis (MSc) -- Faculty of Natural Sciences, 2014
- Full Text:
- Date Issued: 2014
- Authors: Namntu, Vuyokozi
- Date: 2014
- Language: English
- Type: Masters theses , text
- Identifier: http://hdl.handle.net/11260/2964 , vital:43106
- Description: The solution behaviour of nitromethane in inert solvents; carbon tetrachloride, n-hexane and cyclohexane is rigorously investigated using mainly spectroscopic and computational techniques. Analysis of Proton (1H) and Carbon 13 (13C) NMR spectral data reveal that nitromethane solutions in inert solvents form associated species to varying degrees of complexity. A cyclic dimer is postulated as the energetically most favourable chemical species at low solute concentrations. Infrared spectra studied in the overtone region and UV-Visible spectral data confirm the presence of multiple associated chemical species at different solute concentrations with the degree of association progressively increasing with increase in concentration of the solute. The species involved in the association of nitromethane is formulated as (CH3NO2)2n, where n=0, 1,2 and 3, for the monomer, dimer and higher order polymers respectively. Line-shape analysis of both infrared and UV spectra show the onset of a plateau at molar solute concentrations of 0.616 molar described by the point of inflection in the absorption curve at around 0.055 cm-1 , in the second overtone. , Thesis (MSc) -- Faculty of Natural Sciences, 2014
- Full Text:
- Date Issued: 2014
Investigations of growth metrics and δ15N values of water hyacinth (Eichhornia crassipes,(Mart.) Solms-Laub) in relation to biological control
- Authors: Hill, Jaclyn M
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444758 , vital:74265 , https://doi.org/10.1016/j.aquabot.2013.12.001
- Description: The success of biological control for Eichhornia crassipes (Mart) Solms-Laub has been varied, with failure attributed to various factors including increased eutrophication in freshwater systems. Studies have shown that high N-loads are associated with enriched δ15N values of aquatic biota. Stable isotope analyses may help to assess the nutrient status of invaded ecosystems and predict the success of classical biological control. A combination of controlled greenhouse experiments and in situ observations were used to quantify the δ15N equilibration rate of E. crassipes leaf tissue (i.e. the time span of the information on environmental N-loading), confirm the ability of plant tissue to reflect ecosystem N-loading and to compare standard water hyacinth growth metrics with δ15N and C/N ratios to evaluate how well they described eutrophication. Using both δ15N values and C/N ratios, it was possible to clearly distinguish between manure, fertilizer and control regimes and plant tissue provided information on ecosystem N loading over approximately 16 days.
- Full Text:
- Date Issued: 2014
- Authors: Hill, Jaclyn M
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444758 , vital:74265 , https://doi.org/10.1016/j.aquabot.2013.12.001
- Description: The success of biological control for Eichhornia crassipes (Mart) Solms-Laub has been varied, with failure attributed to various factors including increased eutrophication in freshwater systems. Studies have shown that high N-loads are associated with enriched δ15N values of aquatic biota. Stable isotope analyses may help to assess the nutrient status of invaded ecosystems and predict the success of classical biological control. A combination of controlled greenhouse experiments and in situ observations were used to quantify the δ15N equilibration rate of E. crassipes leaf tissue (i.e. the time span of the information on environmental N-loading), confirm the ability of plant tissue to reflect ecosystem N-loading and to compare standard water hyacinth growth metrics with δ15N and C/N ratios to evaluate how well they described eutrophication. Using both δ15N values and C/N ratios, it was possible to clearly distinguish between manure, fertilizer and control regimes and plant tissue provided information on ecosystem N loading over approximately 16 days.
- Full Text:
- Date Issued: 2014
Isn’t it time to start thinking about ‘developing’ academic developers in a more systematic way?
- Quinn, Lynn, Vorster, Jo-Anne E
- Authors: Quinn, Lynn , Vorster, Jo-Anne E
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66546 , vital:28961 , https://doi.org/10.1080/1360144X.2013.879719
- Description: publisher version , There is no defined route to becoming an academic developer. The research on pathways into the field (e.g. Kensington-Miller, Brailsford, and Gossman, 2012; McDonald, 2010; McDonald and Stockley, 2008) shows that in most cases ‘serendipity and chance played a role’ (McDonald, 2010, p. 40). Moreover, induction into academic development (AD) is often ad hoc, haphazard, and informal. Due to the changing higher education (HE) context, the field has grown exponentially and in many countries now plays a central role in institutions. This has generated increased demand for knowledgeable and competent developers that are able to contribute towards solving some vexing problems in contemporary HE. Current recruitment and induction processes of new developers do not necessarily meet this demand. In light of the above, we pose the question: given the changing context of HE and the field of AD, is it not time for us to induct newcomers into the field more systematically? As Kensington-Miller et al. (2012) suggest, we should not leave the induction of the next generation of developers to chance. We suggest that one way of ensuring appropriate induction is through a formal course for developers. Difficulties for newcomers to the field are illustrated by Kensington-Miller et al. (2012) when they report seeking ‘top tips’ at a HERDSA conference. We do not dismiss informal learning at conferences or the role of mentoring, coaching, apprenticeship, and so on, in inducting developers, nor do we minimise the benefits of relatively structured processes such as fellowship programmes, workshops, and postgraduate qualifications in related fields. However, these ways of induction may not offer novices the structured and systematic developmental opportunities needed to become developers able to fulfil varied, complex, and sometimes contradictory roles.
- Full Text: false
- Date Issued: 2014
- Authors: Quinn, Lynn , Vorster, Jo-Anne E
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66546 , vital:28961 , https://doi.org/10.1080/1360144X.2013.879719
- Description: publisher version , There is no defined route to becoming an academic developer. The research on pathways into the field (e.g. Kensington-Miller, Brailsford, and Gossman, 2012; McDonald, 2010; McDonald and Stockley, 2008) shows that in most cases ‘serendipity and chance played a role’ (McDonald, 2010, p. 40). Moreover, induction into academic development (AD) is often ad hoc, haphazard, and informal. Due to the changing higher education (HE) context, the field has grown exponentially and in many countries now plays a central role in institutions. This has generated increased demand for knowledgeable and competent developers that are able to contribute towards solving some vexing problems in contemporary HE. Current recruitment and induction processes of new developers do not necessarily meet this demand. In light of the above, we pose the question: given the changing context of HE and the field of AD, is it not time for us to induct newcomers into the field more systematically? As Kensington-Miller et al. (2012) suggest, we should not leave the induction of the next generation of developers to chance. We suggest that one way of ensuring appropriate induction is through a formal course for developers. Difficulties for newcomers to the field are illustrated by Kensington-Miller et al. (2012) when they report seeking ‘top tips’ at a HERDSA conference. We do not dismiss informal learning at conferences or the role of mentoring, coaching, apprenticeship, and so on, in inducting developers, nor do we minimise the benefits of relatively structured processes such as fellowship programmes, workshops, and postgraduate qualifications in related fields. However, these ways of induction may not offer novices the structured and systematic developmental opportunities needed to become developers able to fulfil varied, complex, and sometimes contradictory roles.
- Full Text: false
- Date Issued: 2014
ISSRs indicate that Chromolaena odorata invading southern Africa originates in Jamaica or Cuba
- Paterson, Iain D, Zachariades, Costas
- Authors: Paterson, Iain D , Zachariades, Costas
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/406105 , vital:70239 , xlink:href="https://doi.org/10.1016/j.biocontrol.2013.04.005"
- Description: Two biotypes of the invasive alien plant, Chromolaena odorata (L.) R.M. King and Rob. (Asteraceae: Eupatorieae), are recognized in the plant’s introduced distribution. The Asian/West African (A/WA) biotype is present in West and Central Africa, India, Southeast Asia and Oceania, while the southern African (SA) biotype is only present in southern Africa. Biological control using insect natural enemies has been significantly more successful against the A/WA biotype than the SA biotype, suggesting that host plant incompatibility may have resulted in reduced efficacy of biological control agents in southern Africa. Inter-Simple Sequence Repeats (ISSR) were used to identify the origin of the SA biotype as Jamaica or Cuba. The data also confirm that the SA biotype is genetically distinct from the A/WA biotype and that the SA biotype is the result of a separate introduction. Biological control agents for C. odorata in southern Africa should be sourced from Jamaica and Cuba in order to avoid host plant incompatibility problems.
- Full Text:
- Date Issued: 2014
- Authors: Paterson, Iain D , Zachariades, Costas
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/406105 , vital:70239 , xlink:href="https://doi.org/10.1016/j.biocontrol.2013.04.005"
- Description: Two biotypes of the invasive alien plant, Chromolaena odorata (L.) R.M. King and Rob. (Asteraceae: Eupatorieae), are recognized in the plant’s introduced distribution. The Asian/West African (A/WA) biotype is present in West and Central Africa, India, Southeast Asia and Oceania, while the southern African (SA) biotype is only present in southern Africa. Biological control using insect natural enemies has been significantly more successful against the A/WA biotype than the SA biotype, suggesting that host plant incompatibility may have resulted in reduced efficacy of biological control agents in southern Africa. Inter-Simple Sequence Repeats (ISSR) were used to identify the origin of the SA biotype as Jamaica or Cuba. The data also confirm that the SA biotype is genetically distinct from the A/WA biotype and that the SA biotype is the result of a separate introduction. Biological control agents for C. odorata in southern Africa should be sourced from Jamaica and Cuba in order to avoid host plant incompatibility problems.
- Full Text:
- Date Issued: 2014
Kalaharituber pfeilii and associated bacterial interactions
- Adeleke, Rasheed, Dames, Joanna F
- Authors: Adeleke, Rasheed , Dames, Joanna F
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/440490 , vital:73787 , https://doi.org/10.1016/j.sajb.2013.10.003
- Description: Truffles are generally known to form a mycorrhizal relationship with plants. Kalaharituber pfeilii (Hennings) Trappe and Kagan-Zur is a species of desert truffle that is found in the southern part of Africa. The life cycle of this truffle has not been fully investigated as there are many unconfirmed plant species that have been suggested as potential hosts. Many mycorrhizal associations often involve other role players such as associated bacteria that may influence the establishment of the mycorrhizal formation and function. As part of an effort to understand the life cycle of K. pfeilii, laboratory experiments were conducted to investigate the role of ascocarp associated bacteria. Bacterial isolates obtained from the truffle ascocarps were subjected to microbiological and biochemical tests to determine their potentials as mycorrhizal helper bacteria. Tests conducted included stimulation of mycelial growth in vitro, indole acetic acid (IAA) production and phosphate solubilising. A total of 17 bacterial strains belonging to the Proteobacteria, Firmicutes and Actinobacteria were isolated from the truffle ascocarps and identified with sequence homology and phylogenetic methods. Three of these isolates showed potential to be helper bacteria in at least one of the media tested through the stimulation of mycelial growth. Furthermore, four isolates produced IAA and one was able to solubilise CaHPO3 in vitro. One isolate, identified as a relative of Paenibacillus sp. stimulated mycelial growth on all the media tested. Other bacterial isolates that showed potential stimulation of mycelial growth were identified molecularly as a Bacillus sp. and two strains of Rhizobium sp. This study has contributed to the existing knowledge on the biotic interactions with K. pfeilii which may be useful in further symbiont and re-synthesis investigations.
- Full Text:
- Date Issued: 2014
- Authors: Adeleke, Rasheed , Dames, Joanna F
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/440490 , vital:73787 , https://doi.org/10.1016/j.sajb.2013.10.003
- Description: Truffles are generally known to form a mycorrhizal relationship with plants. Kalaharituber pfeilii (Hennings) Trappe and Kagan-Zur is a species of desert truffle that is found in the southern part of Africa. The life cycle of this truffle has not been fully investigated as there are many unconfirmed plant species that have been suggested as potential hosts. Many mycorrhizal associations often involve other role players such as associated bacteria that may influence the establishment of the mycorrhizal formation and function. As part of an effort to understand the life cycle of K. pfeilii, laboratory experiments were conducted to investigate the role of ascocarp associated bacteria. Bacterial isolates obtained from the truffle ascocarps were subjected to microbiological and biochemical tests to determine their potentials as mycorrhizal helper bacteria. Tests conducted included stimulation of mycelial growth in vitro, indole acetic acid (IAA) production and phosphate solubilising. A total of 17 bacterial strains belonging to the Proteobacteria, Firmicutes and Actinobacteria were isolated from the truffle ascocarps and identified with sequence homology and phylogenetic methods. Three of these isolates showed potential to be helper bacteria in at least one of the media tested through the stimulation of mycelial growth. Furthermore, four isolates produced IAA and one was able to solubilise CaHPO3 in vitro. One isolate, identified as a relative of Paenibacillus sp. stimulated mycelial growth on all the media tested. Other bacterial isolates that showed potential stimulation of mycelial growth were identified molecularly as a Bacillus sp. and two strains of Rhizobium sp. This study has contributed to the existing knowledge on the biotic interactions with K. pfeilii which may be useful in further symbiont and re-synthesis investigations.
- Full Text:
- Date Issued: 2014
Leadership for biodiversity in South Africa transformation and capacity development in the GreenMatter programme
- Authors: Rosenberg, Eureta
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/437190 , vital:73351 , ISBN 978-9086862528 , https://doi.org/10.3920/978-90-8686-802-5_18
- Description: As we begin to write this chapter, it is only a few hours since the news broke about the passing of Nelson Mandela, the founding president of a democratic South Africa. As we de-scribe our work in supporting intergenerational learning and the development of transformational leadership, it seems appro-priate to make this reference as a tribute to him. This work would not have been possible without the contribution of Man-dela and all who fought for justice and an egalitarian society in South Africa. We are able to write about the so-called ‘born frees’ because of Mandela’s role in dismantling apartheid, a system that sought to condemn black people to perpetual ser-vitude, ignorance and poverty. Indeed, our efforts in building skills for biodiversity, under the auspices of GreenMatter, are inspired by his courageous leadership, his selflessness, com-mitment to education and love of people, knowledge and na-ture. While philosophies, contexts and methods will vary, the quest of all intergenerational learning is to build a bridge that enables young people to learn from the experiences and wisdom of previous generations.
- Full Text:
- Date Issued: 2014
- Authors: Rosenberg, Eureta
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/437190 , vital:73351 , ISBN 978-9086862528 , https://doi.org/10.3920/978-90-8686-802-5_18
- Description: As we begin to write this chapter, it is only a few hours since the news broke about the passing of Nelson Mandela, the founding president of a democratic South Africa. As we de-scribe our work in supporting intergenerational learning and the development of transformational leadership, it seems appro-priate to make this reference as a tribute to him. This work would not have been possible without the contribution of Man-dela and all who fought for justice and an egalitarian society in South Africa. We are able to write about the so-called ‘born frees’ because of Mandela’s role in dismantling apartheid, a system that sought to condemn black people to perpetual ser-vitude, ignorance and poverty. Indeed, our efforts in building skills for biodiversity, under the auspices of GreenMatter, are inspired by his courageous leadership, his selflessness, com-mitment to education and love of people, knowledge and na-ture. While philosophies, contexts and methods will vary, the quest of all intergenerational learning is to build a bridge that enables young people to learn from the experiences and wisdom of previous generations.
- Full Text:
- Date Issued: 2014
Lever Brothers & Unilever – a practical problem of source?
- Stack, Elizabeth M, Grenville, D P, Poole, Richard, Horn, Edward B, Harnett, Hugh N
- Authors: Stack, Elizabeth M , Grenville, D P , Poole, Richard , Horn, Edward B , Harnett, Hugh N
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10962/2143 , vital:20259
- Full Text:
- Date Issued: 2014
- Authors: Stack, Elizabeth M , Grenville, D P , Poole, Richard , Horn, Edward B , Harnett, Hugh N
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10962/2143 , vital:20259
- Full Text:
- Date Issued: 2014
Liberation movements in power: party and state in southern Africa
- Authors: Helliker, Kirk D
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144688 , vital:38370 , DOI: 10.1080/21528586.2014.960705
- Description: In Liberation movements in power, Roger Southall provides a rich and refined account of political transformation in three ex-settler colonies in southern Africa, namely, South Africa, Namibia and Zimbabwe. In particular, he focuses on their former hegemonic national liberation movements, namely, the African National Congress (ANC) in South Africa, the South West African People’s Organisation (SWAPO) in Namibia and the Zimbabwe African National Union (ZANU) – now ZANU-Patriotic Front (ZANU-PF) – in Zimbabwe, their metamorphism into political parties and party machines, and their ‘capture’ of state power as the dominant political party subsequent to the end of white settler colonialism and the emergence of non-racial democracy. The general conclusion is that democratic ideals and procedures have become subordinated to the dictates of authoritarian restructuring.
- Full Text:
- Date Issued: 2014
- Authors: Helliker, Kirk D
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144688 , vital:38370 , DOI: 10.1080/21528586.2014.960705
- Description: In Liberation movements in power, Roger Southall provides a rich and refined account of political transformation in three ex-settler colonies in southern Africa, namely, South Africa, Namibia and Zimbabwe. In particular, he focuses on their former hegemonic national liberation movements, namely, the African National Congress (ANC) in South Africa, the South West African People’s Organisation (SWAPO) in Namibia and the Zimbabwe African National Union (ZANU) – now ZANU-Patriotic Front (ZANU-PF) – in Zimbabwe, their metamorphism into political parties and party machines, and their ‘capture’ of state power as the dominant political party subsequent to the end of white settler colonialism and the emergence of non-racial democracy. The general conclusion is that democratic ideals and procedures have become subordinated to the dictates of authoritarian restructuring.
- Full Text:
- Date Issued: 2014
Life satisfaction and education in South Africa: Investigating the role of attainment and the likelihood of education as a positional good
- Authors: Botha, Ferdi
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/396091 , vital:69149 , xlink:href="https://doi.org/10.1007/s11205-013-0452-2"
- Description: This paper explores various dynamics in the relationship between life satisfaction and education in South Africa using the 2008 National Income Dynamics Survey. The results indicate a strong positive association between educational attainment and individual satisfaction with life, which is true in the overall sample and for men and women. This positive relationship also holds for Black and Coloured individuals, but is insignificant in the Asian and White samples. Evidence indicates that education is a positional good, in that people who have attained more than the mean level of education in their relevant cluster are significantly more satisfied with life compared to those possessing less than the mean education.
- Full Text:
- Date Issued: 2014
- Authors: Botha, Ferdi
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/396091 , vital:69149 , xlink:href="https://doi.org/10.1007/s11205-013-0452-2"
- Description: This paper explores various dynamics in the relationship between life satisfaction and education in South Africa using the 2008 National Income Dynamics Survey. The results indicate a strong positive association between educational attainment and individual satisfaction with life, which is true in the overall sample and for men and women. This positive relationship also holds for Black and Coloured individuals, but is insignificant in the Asian and White samples. Evidence indicates that education is a positional good, in that people who have attained more than the mean level of education in their relevant cluster are significantly more satisfied with life compared to those possessing less than the mean education.
- Full Text:
- Date Issued: 2014
Life-history characteristics of an age-validated established invasive African sharptooth catfish, Clarias gariepinus, population in a warm-temperate African impoundment
- Wartenberg, Reece, Weyl, Olaf L F, Booth, Anthony J, Winker, A Henning
- Authors: Wartenberg, Reece , Weyl, Olaf L F , Booth, Anthony J , Winker, A Henning
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/443542 , vital:74130 , https://hdl.handle.net/10520/EJC145790
- Description: It has been suggested that the invasive, omnivorous Clarias garipienus is capable of rapid invasions and long-term persistence in recently inhabited freshwater systems. To test this hypothesis, the life history of the established, extralimital Darlington Dam (33°10'31"S, 25°09'13"E) population was investigated. By counting post-fluorescent mark increments on otoliths from 21 chemically tagged wild fish recaptured 244-537 days later, the deposition of growth zones, comprising alternating opaque and translucent bands, was validated as annual. Examination of sectioned otoliths from 175 fish revealed that the oldest fish, two males of 840 and 1074 mm total length (TL), were 25 years old - 10 years older than previously described for any C. gariepinus population. The oldest female was 885 mm TL and 21 years old. Length-at-age was subsequently described using the von Bertalanffy growth model. Combined-sex growth was best described as Lt = 931.7 ( 1 - exp(-0.15(t +2.43))) mm TL. Total mortality (Z) was calculated using catch curve analysis and the Chapman and Robson estimator to be 0.35/yr. The presence of specimens 15 years and older indicates that these fish established quickly and supports the finding that mortality rates are low, which, in turn, suggests likely long-term population persistence.
- Full Text:
- Date Issued: 2014
- Authors: Wartenberg, Reece , Weyl, Olaf L F , Booth, Anthony J , Winker, A Henning
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/443542 , vital:74130 , https://hdl.handle.net/10520/EJC145790
- Description: It has been suggested that the invasive, omnivorous Clarias garipienus is capable of rapid invasions and long-term persistence in recently inhabited freshwater systems. To test this hypothesis, the life history of the established, extralimital Darlington Dam (33°10'31"S, 25°09'13"E) population was investigated. By counting post-fluorescent mark increments on otoliths from 21 chemically tagged wild fish recaptured 244-537 days later, the deposition of growth zones, comprising alternating opaque and translucent bands, was validated as annual. Examination of sectioned otoliths from 175 fish revealed that the oldest fish, two males of 840 and 1074 mm total length (TL), were 25 years old - 10 years older than previously described for any C. gariepinus population. The oldest female was 885 mm TL and 21 years old. Length-at-age was subsequently described using the von Bertalanffy growth model. Combined-sex growth was best described as Lt = 931.7 ( 1 - exp(-0.15(t +2.43))) mm TL. Total mortality (Z) was calculated using catch curve analysis and the Chapman and Robson estimator to be 0.35/yr. The presence of specimens 15 years and older indicates that these fish established quickly and supports the finding that mortality rates are low, which, in turn, suggests likely long-term population persistence.
- Full Text:
- Date Issued: 2014
Lived bodies: women’s experience of sex and gender
- Authors: Lothian, Julie-Anne
- Date: 2014
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/69445 , vital:29538
- Description: This thesis will discuss the category of women, as a social group, through a phenomenological understanding of women’s subjective experiences. In arguing for the phenomenological perspective of the lived body, I show the ways in which other conceptions of women’s embodied subjectivity ultimately fail to provide comprehensive accounts of the lived experience of being a woman. I begin with an investigation into how biological determinists hypothesise women’s bodies as sexed. I then move to respond to Judith Butler’s poststructuralist feminist account of the gendered body. Finally, I argue that the embodied experience of being a woman is best explained as an ambiguous relationship between socially constructed expectations of femininity and biological materiality.
- Full Text:
- Date Issued: 2014
- Authors: Lothian, Julie-Anne
- Date: 2014
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/69445 , vital:29538
- Description: This thesis will discuss the category of women, as a social group, through a phenomenological understanding of women’s subjective experiences. In arguing for the phenomenological perspective of the lived body, I show the ways in which other conceptions of women’s embodied subjectivity ultimately fail to provide comprehensive accounts of the lived experience of being a woman. I begin with an investigation into how biological determinists hypothesise women’s bodies as sexed. I then move to respond to Judith Butler’s poststructuralist feminist account of the gendered body. Finally, I argue that the embodied experience of being a woman is best explained as an ambiguous relationship between socially constructed expectations of femininity and biological materiality.
- Full Text:
- Date Issued: 2014
Losing, using, refusing, cruising: first-generation South African women academics narrate the complexity of marginality
- Idahosa, Grace E, Vincent, Louise
- Authors: Idahosa, Grace E , Vincent, Louise
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141820 , vital:38007 , DOI: 10.1080/10130950.2014.874766
- Description: In this article we ask how senior academic women in South Africa narrate their experience of being ‘outside in’ the teaching machine. Wide research literature documents the gross underrepresentation of women in senior positions in the academy. It has been argued that intertwined sexist, patriarchal and phallocentric knowledges and practices in academic institutions produce various forms of discrimination, inequality, oppression and marginalisation. Academic women report feeling invisible and retreating to the margins so as to avoid victimisation and discrimination. Others have pointed to the tension between the ‘tenure clock’ and ‘biological clock’ as a source of anxiety. However, experiences of academic women are not identical. In the context of studies showing the importance of existing personal and social resources, prior experience and having mentors and role models in the negotiation of inequality and discrimination, we document the narratives of women academics who are the first in their families to graduate with a university degree.
- Full Text:
- Date Issued: 2014
- Authors: Idahosa, Grace E , Vincent, Louise
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141820 , vital:38007 , DOI: 10.1080/10130950.2014.874766
- Description: In this article we ask how senior academic women in South Africa narrate their experience of being ‘outside in’ the teaching machine. Wide research literature documents the gross underrepresentation of women in senior positions in the academy. It has been argued that intertwined sexist, patriarchal and phallocentric knowledges and practices in academic institutions produce various forms of discrimination, inequality, oppression and marginalisation. Academic women report feeling invisible and retreating to the margins so as to avoid victimisation and discrimination. Others have pointed to the tension between the ‘tenure clock’ and ‘biological clock’ as a source of anxiety. However, experiences of academic women are not identical. In the context of studies showing the importance of existing personal and social resources, prior experience and having mentors and role models in the negotiation of inequality and discrimination, we document the narratives of women academics who are the first in their families to graduate with a university degree.
- Full Text:
- Date Issued: 2014
Low-cost housing developments in South Africa miss the opportunities for household level urban greening
- Shackleton, Charlie M, Hebinck, Paul, Kaoma, Humphrey, Chishaleshale, Mwale, Chinyimba, Abby, Shackleton, Sheona E, Gambiza, James, Gumbo, Davison
- Authors: Shackleton, Charlie M , Hebinck, Paul , Kaoma, Humphrey , Chishaleshale, Mwale , Chinyimba, Abby , Shackleton, Sheona E , Gambiza, James , Gumbo, Davison
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180967 , vital:43677 , xlink:href="https://doi.org/10.1016/j.landusepol.2013.10.002"
- Description: Most developing countries of the world are experiencing large-scale migration from rural to urban areas. Many new migrants end up in low-cost or informal areas and slums with attendant environmental concerns. One dimension of improved urban sustainability is the provision of green spaces and trees. Whilst many countries have urban greening programmes for public spaces and streets, few have considered the status and potential contribution of trees from resident's own gardens. This paper reports firstly on the policy environment for urban forestry and greening in South Africa and secondly on the maintenance, use and appreciation of trees on private homesteads of residents of new and older low-income suburbs as well as informal housing areas from three small towns in South Africa. In particular we examine if the most recent centrally planned and built low-income housing schemes (called RDP suburbs in South Africa) have considered and incorporated plans or spaces for urban greenery in peoples’ homesteads. We found that broad environmental and sustainability concerns and statements are common in urban development and housing policies, but specific guidelines for implementation are generally absent. More specifically, urban forestry and tree planting are rarely mentioned in the broader land use and environmental policies other than the national forest act and subsequent regulations, but even there it is relatively superficial. In the study towns the prevalence, density and number of species of trees was lowest in the new RDP suburbs relative to the township and informal areas. Consequently, the contribution of tree products to local livelihoods was also lower in the RDP areas. Yet there were no differences in the level of appreciation of the value and intangible benefits of trees between residents from the three different suburbs. This shows that the failure to plan for and accommodate trees in new low-cost housing developments is missing an opportunity to improve overall urban sustainability and liveability and constraining the potential flows of tangible and intangible benefits to urban residents. Making opportunities for such in older suburbs is challenging because of space limitations and cost implications of retrospective provisions, but incorporation into plans for new low-cost housing development should be possible.
- Full Text:
- Date Issued: 2014
- Authors: Shackleton, Charlie M , Hebinck, Paul , Kaoma, Humphrey , Chishaleshale, Mwale , Chinyimba, Abby , Shackleton, Sheona E , Gambiza, James , Gumbo, Davison
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180967 , vital:43677 , xlink:href="https://doi.org/10.1016/j.landusepol.2013.10.002"
- Description: Most developing countries of the world are experiencing large-scale migration from rural to urban areas. Many new migrants end up in low-cost or informal areas and slums with attendant environmental concerns. One dimension of improved urban sustainability is the provision of green spaces and trees. Whilst many countries have urban greening programmes for public spaces and streets, few have considered the status and potential contribution of trees from resident's own gardens. This paper reports firstly on the policy environment for urban forestry and greening in South Africa and secondly on the maintenance, use and appreciation of trees on private homesteads of residents of new and older low-income suburbs as well as informal housing areas from three small towns in South Africa. In particular we examine if the most recent centrally planned and built low-income housing schemes (called RDP suburbs in South Africa) have considered and incorporated plans or spaces for urban greenery in peoples’ homesteads. We found that broad environmental and sustainability concerns and statements are common in urban development and housing policies, but specific guidelines for implementation are generally absent. More specifically, urban forestry and tree planting are rarely mentioned in the broader land use and environmental policies other than the national forest act and subsequent regulations, but even there it is relatively superficial. In the study towns the prevalence, density and number of species of trees was lowest in the new RDP suburbs relative to the township and informal areas. Consequently, the contribution of tree products to local livelihoods was also lower in the RDP areas. Yet there were no differences in the level of appreciation of the value and intangible benefits of trees between residents from the three different suburbs. This shows that the failure to plan for and accommodate trees in new low-cost housing developments is missing an opportunity to improve overall urban sustainability and liveability and constraining the potential flows of tangible and intangible benefits to urban residents. Making opportunities for such in older suburbs is challenging because of space limitations and cost implications of retrospective provisions, but incorporation into plans for new low-cost housing development should be possible.
- Full Text:
- Date Issued: 2014
Macbeth: The great doom’s image
- Authors: Butler, Frederick G
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/454022 , vital:75305 , 10.4314/sisa.v26i1.5
- Description: This lecture employs the old-fashioned technique of studying a group or cluster of images in order to arrive at a better understanding of the work. Macbeth has proved a particularly happy hunting ground for image chasers; this exercise differs from most others in attempting to show how a number of images, mainly in the first two acts and particularly in Act 1 Scene 7 and Act 2 scenes 1-6, recreate and then draw force from a sequence of quite specific events in the Christian ‘myth’ – rather in the manner that Joyce’s Ulysses exploits the Odyssey. Previous critics have detected in certain scenes references to particular incidents in that myth (such as the Porter’s parody of the Harrowing of Hell) and allusions to the general resurrection, as well as to the day of Judgement.
- Full Text:
- Date Issued: 2014
- Authors: Butler, Frederick G
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/454022 , vital:75305 , 10.4314/sisa.v26i1.5
- Description: This lecture employs the old-fashioned technique of studying a group or cluster of images in order to arrive at a better understanding of the work. Macbeth has proved a particularly happy hunting ground for image chasers; this exercise differs from most others in attempting to show how a number of images, mainly in the first two acts and particularly in Act 1 Scene 7 and Act 2 scenes 1-6, recreate and then draw force from a sequence of quite specific events in the Christian ‘myth’ – rather in the manner that Joyce’s Ulysses exploits the Odyssey. Previous critics have detected in certain scenes references to particular incidents in that myth (such as the Porter’s parody of the Harrowing of Hell) and allusions to the general resurrection, as well as to the day of Judgement.
- Full Text:
- Date Issued: 2014
Mini-review on the use of liquid membranes in the extraction of platinum group metals from mining and metal refinery wastewaters/side-streams
- Moyo, Francis, Tandlich, Roman
- Authors: Moyo, Francis , Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75960 , vital:30487 , DOI: 10.4172/2155-6199.1000228
- Description: The current mini-review focuses on the use of liquid membranes in the platinum group metal (PGM/PGMs) extraction from various types of wastewaters to prevent environmental pollution; and for the metal recovery to address the scarcity of the PGMs in the industrial cycles. The bulk liquid membranes have been used to the extracted PGMs from the (acidic) aqueous media with recoveries of up to 96.3 ± 2.5% of the original PGM amount. The extraction time generally ranges from 2 to 24 hours. The bulk membrane liquid in the PGM extraction will depend on the covalent structure of the extractant, the feed phase PGM concentration and the complex of the PGM in question that is actually extracted from the aqueous environment. The advantages of this type of liquid membrane include its operational simplicity, but the disadvantages include limited possibility to improve the extraction performance of the system. Literature data are encouraging as they indicate that extraction of PGMs from mining and metal-refinery side-streams does not suffer from interference from metal contaminants that are commonly found in the mining and metal refinery side-streams, e.g. iron. Thus further research should focus on the application of ELM to extraction of PGMs from said wastewaters and major research drive should focus on the use of the Taylorvortex column and the non-Newtonian ELMs. With the supported liquid membranes, 78-82% of the original PGM content could be recovered from model side-streams. The selectivity of the extraction for individual PGMs can be controlled by the extractant used.
- Full Text:
- Date Issued: 2014
- Authors: Moyo, Francis , Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75960 , vital:30487 , DOI: 10.4172/2155-6199.1000228
- Description: The current mini-review focuses on the use of liquid membranes in the platinum group metal (PGM/PGMs) extraction from various types of wastewaters to prevent environmental pollution; and for the metal recovery to address the scarcity of the PGMs in the industrial cycles. The bulk liquid membranes have been used to the extracted PGMs from the (acidic) aqueous media with recoveries of up to 96.3 ± 2.5% of the original PGM amount. The extraction time generally ranges from 2 to 24 hours. The bulk membrane liquid in the PGM extraction will depend on the covalent structure of the extractant, the feed phase PGM concentration and the complex of the PGM in question that is actually extracted from the aqueous environment. The advantages of this type of liquid membrane include its operational simplicity, but the disadvantages include limited possibility to improve the extraction performance of the system. Literature data are encouraging as they indicate that extraction of PGMs from mining and metal-refinery side-streams does not suffer from interference from metal contaminants that are commonly found in the mining and metal refinery side-streams, e.g. iron. Thus further research should focus on the application of ELM to extraction of PGMs from said wastewaters and major research drive should focus on the use of the Taylorvortex column and the non-Newtonian ELMs. With the supported liquid membranes, 78-82% of the original PGM content could be recovered from model side-streams. The selectivity of the extraction for individual PGMs can be controlled by the extractant used.
- Full Text:
- Date Issued: 2014
Mitonuclear discordance in genetic structure across the Atlantic/Indian Ocean biogeographical transition zone
- Teske, Peter R, Papadopoulos, Isabelle, Barker, Nigel P, McQuaid, Christopher D, Beheregaray, Luciano B
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D , Beheregaray, Luciano B
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444832 , vital:74301 , https://doi.org/10.1111/jbi.1220
- Description: Based on mitochondrial DNA (mtDNA) data, many organisms with ranges spanning multiple biogeographical regions exhibit genetic structure across the transition zones between these regions, while others appear to be genetically homogenous. No clear link has been found between the presence or absence of such spatial genetic discontinuities and species' dispersal potential, confounding the formulation of general predictions concerning genetic structure. The fact that discrepancies between mtDNA and nuclear markers are common across semi‐permeable barriers suggests that a lack of structure could be attributable to mtDNA‐specific properties of inheritance. We re‐examined genetic structure in the coastal crab Hymenosoma orbiculare, a species that is represented by a single mtDNA lineage across the Atlantic/Indian Ocean biogeographical transition zone, by comparing mtDNA data with nuclear DNA data.
- Full Text:
- Date Issued: 2014
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D , Beheregaray, Luciano B
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444832 , vital:74301 , https://doi.org/10.1111/jbi.1220
- Description: Based on mitochondrial DNA (mtDNA) data, many organisms with ranges spanning multiple biogeographical regions exhibit genetic structure across the transition zones between these regions, while others appear to be genetically homogenous. No clear link has been found between the presence or absence of such spatial genetic discontinuities and species' dispersal potential, confounding the formulation of general predictions concerning genetic structure. The fact that discrepancies between mtDNA and nuclear markers are common across semi‐permeable barriers suggests that a lack of structure could be attributable to mtDNA‐specific properties of inheritance. We re‐examined genetic structure in the coastal crab Hymenosoma orbiculare, a species that is represented by a single mtDNA lineage across the Atlantic/Indian Ocean biogeographical transition zone, by comparing mtDNA data with nuclear DNA data.
- Full Text:
- Date Issued: 2014
Modelling annual evapotranspiration in a semi-arid, African savanna: functional convergence theory, MODIS LAI and the Penman–Monteith equation
- Palmer, Anthony R, Weideman, Craig I, Finca, Andiswa, Everson, Colin S, Hanan, Niall P, Ellery, William F N
- Authors: Palmer, Anthony R , Weideman, Craig I , Finca, Andiswa , Everson, Colin S , Hanan, Niall P , Ellery, William F N
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144387 , vital:38341 , DOI: 10.2989/10220119.2014.931305
- Description: Accurately measuring evapotranspiration (ET) is essential if we are to derive reasonable estimates of production and water use for semi-arid savannas. Estimates of ET are also important in defining the health of an ecosystem and the quantity of water used by the vegetation when preparing a catchment-scale water balance. We derived ET0 from an automatic weather station 30 km west of Skukuza, Kruger National Park, South Africa using the Penman– Monteith equation, and then used the MODIS LAI to inform the model of canopy phenological dynamics. This result was compared with 173 days of ET measurements from the eddy covariance (ETec) system near Skukuza in 2007 as well as from the ET recorded by a large-aperture scintillometer at the same site in 2005. The model compared favourably with both sets of measured data and, when used independently of the eddy covariance data, ETMODIS predicted an annual ET of 378 mm in 2007 for the semi-arid savanna around the Skukuza flux site.
- Full Text:
- Date Issued: 2014
- Authors: Palmer, Anthony R , Weideman, Craig I , Finca, Andiswa , Everson, Colin S , Hanan, Niall P , Ellery, William F N
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144387 , vital:38341 , DOI: 10.2989/10220119.2014.931305
- Description: Accurately measuring evapotranspiration (ET) is essential if we are to derive reasonable estimates of production and water use for semi-arid savannas. Estimates of ET are also important in defining the health of an ecosystem and the quantity of water used by the vegetation when preparing a catchment-scale water balance. We derived ET0 from an automatic weather station 30 km west of Skukuza, Kruger National Park, South Africa using the Penman– Monteith equation, and then used the MODIS LAI to inform the model of canopy phenological dynamics. This result was compared with 173 days of ET measurements from the eddy covariance (ETec) system near Skukuza in 2007 as well as from the ET recorded by a large-aperture scintillometer at the same site in 2005. The model compared favourably with both sets of measured data and, when used independently of the eddy covariance data, ETMODIS predicted an annual ET of 378 mm in 2007 for the semi-arid savanna around the Skukuza flux site.
- Full Text:
- Date Issued: 2014
Modelling the spatial and genetic response of the endemic sparid: Polysteganus praeorbitalis (Pisces: Sparidae) to climate change in the Agulhas Current system
- Authors: Isemonger, Devin Neil
- Date: 2014
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/54509 , vital:26576
- Description: The Scotsman Seabream, Polysteganus praeorbitalis, is one of several large, slow-growing members of the Sparidae family of fishes endemic to the Agulhas Current system in the Western Indian Ocean (WIO). Relatively little research has been conducted on this species despite its importance to both recreational and commercial line fisheries in South Africa and the drastic decline in catch per unit effort (CPUE) that has been recorded since the 1940s. Changing sea temperatures as a result of global climate change are further expected to affect the distribution and abundance of many fish species based on their thermal tolerances, life histories and population structures. The ability of these species to shift their distribution and adapt to new environments and thermal conditions will depend to some degree on the levels of genetic variation and gene flow, within and between populations. A combined approach using species distribution modelling and genetic analyses may prove to be a useful tool in investigating the potential effects of climate change on the distribution and genetic diversity of species. An ensemble species distribution model (SDM) based on 205 occurrence records and 30 years of Reynolds Optimum Interpolated (OI) sea surface temperature data was constructed to predict the distributional response of P. praeorbitalis to climate change in the Agulhas Current system. The ensemble SDM displayed a true skill statistic (TSS) of 0.975 and an area under the receiver operating curve (ROC) of 0.999, indicating good model fit. Autumn and winter minimum temperatures, as well as bathymetry, were the most important predictor variables in the majority of models, indicating that these variables may directly constrain the distribution of P. praeorbitalis. In particular, the southern range edge of this species appeared to be constrained by autumn and winter minima, with high model agreement on this range edge. Conversely, the northern range limit showed poor model agreement leading to a gradual reduction in occurrence. This indicates that this range edge may be constrained by other factors not included in the models such as species interactions. The ensemble SDM projected the current range of P. praeorbitalis to be 1500 km², smaller than the published range for this species. The model underestimated the northern range edge of this species by approximately 5° latitude when binary transformed. This is probably due to the rarity of this species in the landings of the Mozambican linefishery, which was assumed to be an indication of low abundance of P. praeorbitalis in these waters. The absence of a specimen to verify the published northern range edge of this species indicates that the northern range edge produced by this model is likely to be closer to the actual range limit of the species. A range contraction of 30% occurring at both the northern and southern edge of P. praeorbitalis’ range and range fragmentation occurring, towards its northern range edge by 2030, was predicted. These changes are modelled to be the results of cooling related to the intensification of the Port Alfred upwelling cell and of warming predicted north of the Natal Bight and in southern Mozambique. Genetic analyses of the nuclear DNA (nDNA) S7 intron 1 and mitochondrial DNA (mtDNA) control region genes were carried out using 118 tissue samples of P. praeorbitalis collected at four main localities: the Eastern Cape, Transkei, southern KwaZulu-Natal and northern KwaZulu-Natal. Analyses of genetic diversity levels revealed relatively low diversity in the mtDNA dataset (Hd = 0.488; π = 0.004) and moderate levels of diversity in the nDNA dataset (Ad = 0.922; π = 0.005). The low levels of diversity observed in the mtDNA dataset might be explained by a number of factors, including high variation in spawning success, the negative effects of over-harvesting, or a recent population bottleneck. The last explanation is supported by characteristic star-shaped haplotype networks and unimodal mismatch distributions displayed by both datasets. These results, in conjunction with a significant (p = 0.005) negative Tajimas D value (-2.029) in the mtDNA dataset and significant (p = 0.0005) negative Fu’s F statistic in both the nDNA (F = -26.5) and mtDNA (F = -11.9) datasets, provide strong evidence for a recent population expansion after a bottleneck event in this species. Spatially, mtDNA diversity was highest in the Eastern Cape and lowest in the middle localities, while nDNA diversity showed the opposite pattern. These results may be indicative of differences in the sex ratio between localities, possibly as a result of the protogynous hermaphroditism that has been postulated for this species. Although pairwise comparisons and exact tests of population differentiation revealed no significant geneticdifferentiation between populations in the mtDNA dataset, there was some evidence of low levels of differentiation in the nDNA dataset. This occurred for comparisons between the Eastern Cape and Transkei (Fst = 0.039; p <0.05), and the northern KwaZulu-Natal (Fst = 0.045; p < 0.05).. This might be the result of one or a combination of factors including the effects of the Port Alfred upwelling cell on dispersal and gene flow, or the possibility of more than one spawning ground for this species promoting sub-structuring. A SAMOVA analyses run on the nDNA dataset maximised variance by grouping the Eastern Cape and southern KwaZulu-Natal together and Transkei and northern KwaZulu-Natal together in two groups. This revealed no evidence of spatial structure (p = 0.36), with only 3.30% of variation explained by this grouping. The removal of individuals below the estimated length at 50% maturity in the nDNA dataset, in order to test for temporal structure, resulted in stronger evidence of differentiation between the Eastern Cape and all other localities: Transkei (Fst = 0.081; p< 0.05), southern KwaZulu-Natal (Fst = 0.031; p<0.05), and northern KwaZulu-Natal (Fst = 0.078; p< 0.05). This indicates that some temporal genetic structure may exist between age classes within this species. The differentiation observed between the Eastern Cape and other localities, coupled with the high percentage of private haplotypes in the mtDNA dataset in this locality, indicates that this area is where P. praeorbitalis is most vulnerable to the potential negative effects of climate change on its genetic diversity. However, the vast majority of this species genetic diversity appears to reside towards the centre of its range where it is most abundant and the lack of strong genetic structure indicates high levels of gene flow. In conclusion, while P. praeorbitalis is vulnerable to range loss as a result of climate change, its genetic diversity is unlikely to be greatly affected.
- Full Text:
- Date Issued: 2014
- Authors: Isemonger, Devin Neil
- Date: 2014
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/54509 , vital:26576
- Description: The Scotsman Seabream, Polysteganus praeorbitalis, is one of several large, slow-growing members of the Sparidae family of fishes endemic to the Agulhas Current system in the Western Indian Ocean (WIO). Relatively little research has been conducted on this species despite its importance to both recreational and commercial line fisheries in South Africa and the drastic decline in catch per unit effort (CPUE) that has been recorded since the 1940s. Changing sea temperatures as a result of global climate change are further expected to affect the distribution and abundance of many fish species based on their thermal tolerances, life histories and population structures. The ability of these species to shift their distribution and adapt to new environments and thermal conditions will depend to some degree on the levels of genetic variation and gene flow, within and between populations. A combined approach using species distribution modelling and genetic analyses may prove to be a useful tool in investigating the potential effects of climate change on the distribution and genetic diversity of species. An ensemble species distribution model (SDM) based on 205 occurrence records and 30 years of Reynolds Optimum Interpolated (OI) sea surface temperature data was constructed to predict the distributional response of P. praeorbitalis to climate change in the Agulhas Current system. The ensemble SDM displayed a true skill statistic (TSS) of 0.975 and an area under the receiver operating curve (ROC) of 0.999, indicating good model fit. Autumn and winter minimum temperatures, as well as bathymetry, were the most important predictor variables in the majority of models, indicating that these variables may directly constrain the distribution of P. praeorbitalis. In particular, the southern range edge of this species appeared to be constrained by autumn and winter minima, with high model agreement on this range edge. Conversely, the northern range limit showed poor model agreement leading to a gradual reduction in occurrence. This indicates that this range edge may be constrained by other factors not included in the models such as species interactions. The ensemble SDM projected the current range of P. praeorbitalis to be 1500 km², smaller than the published range for this species. The model underestimated the northern range edge of this species by approximately 5° latitude when binary transformed. This is probably due to the rarity of this species in the landings of the Mozambican linefishery, which was assumed to be an indication of low abundance of P. praeorbitalis in these waters. The absence of a specimen to verify the published northern range edge of this species indicates that the northern range edge produced by this model is likely to be closer to the actual range limit of the species. A range contraction of 30% occurring at both the northern and southern edge of P. praeorbitalis’ range and range fragmentation occurring, towards its northern range edge by 2030, was predicted. These changes are modelled to be the results of cooling related to the intensification of the Port Alfred upwelling cell and of warming predicted north of the Natal Bight and in southern Mozambique. Genetic analyses of the nuclear DNA (nDNA) S7 intron 1 and mitochondrial DNA (mtDNA) control region genes were carried out using 118 tissue samples of P. praeorbitalis collected at four main localities: the Eastern Cape, Transkei, southern KwaZulu-Natal and northern KwaZulu-Natal. Analyses of genetic diversity levels revealed relatively low diversity in the mtDNA dataset (Hd = 0.488; π = 0.004) and moderate levels of diversity in the nDNA dataset (Ad = 0.922; π = 0.005). The low levels of diversity observed in the mtDNA dataset might be explained by a number of factors, including high variation in spawning success, the negative effects of over-harvesting, or a recent population bottleneck. The last explanation is supported by characteristic star-shaped haplotype networks and unimodal mismatch distributions displayed by both datasets. These results, in conjunction with a significant (p = 0.005) negative Tajimas D value (-2.029) in the mtDNA dataset and significant (p = 0.0005) negative Fu’s F statistic in both the nDNA (F = -26.5) and mtDNA (F = -11.9) datasets, provide strong evidence for a recent population expansion after a bottleneck event in this species. Spatially, mtDNA diversity was highest in the Eastern Cape and lowest in the middle localities, while nDNA diversity showed the opposite pattern. These results may be indicative of differences in the sex ratio between localities, possibly as a result of the protogynous hermaphroditism that has been postulated for this species. Although pairwise comparisons and exact tests of population differentiation revealed no significant geneticdifferentiation between populations in the mtDNA dataset, there was some evidence of low levels of differentiation in the nDNA dataset. This occurred for comparisons between the Eastern Cape and Transkei (Fst = 0.039; p <0.05), and the northern KwaZulu-Natal (Fst = 0.045; p < 0.05).. This might be the result of one or a combination of factors including the effects of the Port Alfred upwelling cell on dispersal and gene flow, or the possibility of more than one spawning ground for this species promoting sub-structuring. A SAMOVA analyses run on the nDNA dataset maximised variance by grouping the Eastern Cape and southern KwaZulu-Natal together and Transkei and northern KwaZulu-Natal together in two groups. This revealed no evidence of spatial structure (p = 0.36), with only 3.30% of variation explained by this grouping. The removal of individuals below the estimated length at 50% maturity in the nDNA dataset, in order to test for temporal structure, resulted in stronger evidence of differentiation between the Eastern Cape and all other localities: Transkei (Fst = 0.081; p< 0.05), southern KwaZulu-Natal (Fst = 0.031; p<0.05), and northern KwaZulu-Natal (Fst = 0.078; p< 0.05). This indicates that some temporal genetic structure may exist between age classes within this species. The differentiation observed between the Eastern Cape and other localities, coupled with the high percentage of private haplotypes in the mtDNA dataset in this locality, indicates that this area is where P. praeorbitalis is most vulnerable to the potential negative effects of climate change on its genetic diversity. However, the vast majority of this species genetic diversity appears to reside towards the centre of its range where it is most abundant and the lack of strong genetic structure indicates high levels of gene flow. In conclusion, while P. praeorbitalis is vulnerable to range loss as a result of climate change, its genetic diversity is unlikely to be greatly affected.
- Full Text:
- Date Issued: 2014
Morphological identification of Lucilia sericata, Lucilia cuprina and their hybrids (Diptera, Calliphoridae)
- Williams, Kirstin A, Villet, Martin H
- Authors: Williams, Kirstin A , Villet, Martin H
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441476 , vital:73892 , https://zookeys.pensoft.net/articles.php?id=3908
- Description: Hybrids of Lucilia sericata and Lucilia cuprina have been shown to exist in previous studies using molecular methods, but no study has shown explicitly that these hybrids can be identified morphologically. Published morphological characters used to identify L. sericata and L. cuprina were reviewed, and then scored and tested using specimens of both species and known hybrids. Ordination by multi-dimensional scaling indicated that the species were separable, and that hybrids resembled L. cuprina, whatever their origin. Discriminant function analysis of the characters successfully separated the specimens into three unambiguous groups – L. sericata, L. cuprina and hybrids. The hybrids were morphologically similar irrespective of whether they were from an ancient introgressed lineage or more modern. This is the first evidence that hybrids of these two species can be identified from their morphology. The usefulness of the morphological characters is also discussed and photographs of several characters are included to facilitate their assessment.
- Full Text:
- Date Issued: 2014
- Authors: Williams, Kirstin A , Villet, Martin H
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441476 , vital:73892 , https://zookeys.pensoft.net/articles.php?id=3908
- Description: Hybrids of Lucilia sericata and Lucilia cuprina have been shown to exist in previous studies using molecular methods, but no study has shown explicitly that these hybrids can be identified morphologically. Published morphological characters used to identify L. sericata and L. cuprina were reviewed, and then scored and tested using specimens of both species and known hybrids. Ordination by multi-dimensional scaling indicated that the species were separable, and that hybrids resembled L. cuprina, whatever their origin. Discriminant function analysis of the characters successfully separated the specimens into three unambiguous groups – L. sericata, L. cuprina and hybrids. The hybrids were morphologically similar irrespective of whether they were from an ancient introgressed lineage or more modern. This is the first evidence that hybrids of these two species can be identified from their morphology. The usefulness of the morphological characters is also discussed and photographs of several characters are included to facilitate their assessment.
- Full Text:
- Date Issued: 2014