μCloud : a P2P cloud platform for computing service provision
- Authors: Fouodji Tasse, Ghislain
- Date: 2012 , 2012-08-22
- Subjects: Cloud computing , Peer-to-peer architecture (Computer networks) , Computer architecture , Computer service industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4663 , http://hdl.handle.net/10962/d1006669 , Cloud computing , Peer-to-peer architecture (Computer networks) , Computer architecture , Computer service industry
- Description: The advancements in virtualization technologies have provided a large spectrum of computational approaches. Dedicated computations can be run on private environments (virtual machines), created within the same computer. Through capable APIs, this functionality is leveraged for the service we wish to implement; a computer power service (CPS). We target peer-to-peer systems for this service, to exploit the potential of aggregating computing resources. The concept of a P2P network is mostly known for its expanded usage in distributed networks for sharing resources like content files or real-time data. This study adds computing power to the list of shared resources by describing a suitable service composition. Taking into account the dynamic nature of the platform, this CPS provision is achieved using a self stabilizing clustering algorithm. So, the resulting system of our research is based around a hierarchical P2P architecture and offers end-to-end consideration of resource provisioning and reliability. We named this system μCloud and characterizes it as a self-provisioning cloud service platform. It is designed, implemented and presented in this dissertation. Eventually, we assessed our work by showing that μCloud succeeds in providing user-centric services using a P2P computing unit. With this, we conclude that our system would be highly beneficial in both small and massively deployed environments. , KMBT_223 , Adobe Acrobat 9.51 Paper Capture Plug-in
- Full Text:
- Date Issued: 2012
- Authors: Fouodji Tasse, Ghislain
- Date: 2012 , 2012-08-22
- Subjects: Cloud computing , Peer-to-peer architecture (Computer networks) , Computer architecture , Computer service industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4663 , http://hdl.handle.net/10962/d1006669 , Cloud computing , Peer-to-peer architecture (Computer networks) , Computer architecture , Computer service industry
- Description: The advancements in virtualization technologies have provided a large spectrum of computational approaches. Dedicated computations can be run on private environments (virtual machines), created within the same computer. Through capable APIs, this functionality is leveraged for the service we wish to implement; a computer power service (CPS). We target peer-to-peer systems for this service, to exploit the potential of aggregating computing resources. The concept of a P2P network is mostly known for its expanded usage in distributed networks for sharing resources like content files or real-time data. This study adds computing power to the list of shared resources by describing a suitable service composition. Taking into account the dynamic nature of the platform, this CPS provision is achieved using a self stabilizing clustering algorithm. So, the resulting system of our research is based around a hierarchical P2P architecture and offers end-to-end consideration of resource provisioning and reliability. We named this system μCloud and characterizes it as a self-provisioning cloud service platform. It is designed, implemented and presented in this dissertation. Eventually, we assessed our work by showing that μCloud succeeds in providing user-centric services using a P2P computing unit. With this, we conclude that our system would be highly beneficial in both small and massively deployed environments. , KMBT_223 , Adobe Acrobat 9.51 Paper Capture Plug-in
- Full Text:
- Date Issued: 2012
Web-based visualisation techniques for reporting zoonotic outbreaks
- Authors: Ncube, Sinini Paul
- Date: 2012
- Subjects: Zoonoses -- Reporting , Communicable diseases -- Reporting , Communication in medicine , Medical telematics , Internet , Information visualization
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4664 , http://hdl.handle.net/10962/d1006672 , Zoonoses -- Reporting , Communicable diseases -- Reporting , Communication in medicine , Medical telematics , Internet , Information visualization
- Description: Zoonotic diseases are diseases that are transmitted from animals or vectors to humans and vice versa. The public together with veterinarian authorities should readily access disease information as it is vital in rapidly controlling resultant zoonotic outbreak threats through improved awareness. Currently, the reporting of disease information in South Africa is predominantly limited to traditional methods of Information Communication Technologies (ICTs) like faxes, monthly newspaper reports, radios, phones and televisions. Although these are effective ways of communication, their disadvantage is that the information that most of them offer can only be accessed at specific times during a crisis. New technologies like the internet have become the most efficient way of distributing information in near-real-time. Many developed countries have used web-based reporting platforms to deliver timely information through temporal and geographic visualisation techniques. There has been an attempt in the use of web-based reporting in South Africa but most of these sites are characterised by heavy text which makes them time consuming to use or maintain. As a result most sites have not been updated or have ceased to exist because of the work load involved. The success of web reporting mechanisms in developed countries offers evidence that web-based reporting systems when appropriately visualised can improve the easy understanding of information and efficiency in the analysis of that data. In this thesis, a web-based reporting prototype was proposed after gathering information from different sources: literature related to disease reporting and the visualisation of infectious diseases; the exploration of the currently deployed web systems; and the investigation of user requirements from relevant parties. The proposed prototype system was then developed using Adobe Flash tools, Java and MySQL languages. A focus group then reviewed the developed system to ascertain that the relevant requirements had been incorporated and to obtain additional ideas about the system. This led to the proposal of a new prototype system that can be used by the authorities concerned as a plan to develop a fully functional disease reporting system for South Africa.
- Full Text:
- Date Issued: 2012
- Authors: Ncube, Sinini Paul
- Date: 2012
- Subjects: Zoonoses -- Reporting , Communicable diseases -- Reporting , Communication in medicine , Medical telematics , Internet , Information visualization
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4664 , http://hdl.handle.net/10962/d1006672 , Zoonoses -- Reporting , Communicable diseases -- Reporting , Communication in medicine , Medical telematics , Internet , Information visualization
- Description: Zoonotic diseases are diseases that are transmitted from animals or vectors to humans and vice versa. The public together with veterinarian authorities should readily access disease information as it is vital in rapidly controlling resultant zoonotic outbreak threats through improved awareness. Currently, the reporting of disease information in South Africa is predominantly limited to traditional methods of Information Communication Technologies (ICTs) like faxes, monthly newspaper reports, radios, phones and televisions. Although these are effective ways of communication, their disadvantage is that the information that most of them offer can only be accessed at specific times during a crisis. New technologies like the internet have become the most efficient way of distributing information in near-real-time. Many developed countries have used web-based reporting platforms to deliver timely information through temporal and geographic visualisation techniques. There has been an attempt in the use of web-based reporting in South Africa but most of these sites are characterised by heavy text which makes them time consuming to use or maintain. As a result most sites have not been updated or have ceased to exist because of the work load involved. The success of web reporting mechanisms in developed countries offers evidence that web-based reporting systems when appropriately visualised can improve the easy understanding of information and efficiency in the analysis of that data. In this thesis, a web-based reporting prototype was proposed after gathering information from different sources: literature related to disease reporting and the visualisation of infectious diseases; the exploration of the currently deployed web systems; and the investigation of user requirements from relevant parties. The proposed prototype system was then developed using Adobe Flash tools, Java and MySQL languages. A focus group then reviewed the developed system to ascertain that the relevant requirements had been incorporated and to obtain additional ideas about the system. This led to the proposal of a new prototype system that can be used by the authorities concerned as a plan to develop a fully functional disease reporting system for South Africa.
- Full Text:
- Date Issued: 2012
Water quality dynamics in an experimental serial-use raceway and its effects on growth of South African abalone, Haliotis midae
- Authors: Naylor, Matthew Aubrey
- Date: 2012
- Subjects: Haliotis midae -- South Africa , Abalone culture -- South Africa , Abalones -- Effect of water quality on , Abalones -- Nutrition -- South Africa , Abalones -- Feeding and feeds , Abalones -- Growth , Fish culture -- Water reuse
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5335 , http://hdl.handle.net/10962/d1005181 , Haliotis midae -- South Africa , Abalone culture -- South Africa , Abalones -- Effect of water quality on , Abalones -- Nutrition -- South Africa , Abalones -- Feeding and feeds , Abalones -- Growth , Fish culture -- Water reuse
- Description: An understanding of species specific water quality requirements is essential for efficient production of aquaculture products, an aspect not well documented for the land-based culture of the South African abalone, Haliotis midae. In order for the industry to remain competitive in international markets, efficient use of water supplies and the development of water reuse technology is needed. This study assessed the changes in water quality between tanks in a tiered serial-use raceway in relation to accumulated biomass and water flow and estimated the flow index (FI) (L h⁻¹ kg⁻¹) at which growth becomes significantly affected. The effect of dietary protein level, supplementation of pure oxygen and addition of sodium hydroxide (NaOH⁻) on water quality and fundamental production parameters in the serial-use raceways was also assessed. The serial-use raceways were used as a tool to create a range of water quality conditions at which the growth, feed conversion ratio (FCR) and condition factor (CF) of "cocktail" size (60 – 70 mm) H. midae could be monitored. The metabolic activity of the abalone resulted in a deterioration in water quality between tanks in series. pH (r² = 0.99; p < 0.001) and dissolved oxygen concentration (r² = 0.99; p < 0.001) were positively correlated with flow index (pH = 7.38 FI°·°² ; dissolved oxygen = 6.92 FI°·°⁴), while free ammonia nitrogen (FAN) (r² = 0.99, p < 0.001) and nitrite (NO²⁻ - N) (r² = 0.93, p < 0.001) were negatively correlated with flow index (FAN = 8.02 FI⁻°·⁷¹). Nitrite concentrations increased over time indicating colonisation of Nitrosomonas bacteria on the basket surfaces. A flow index of 7.2 – 9.0 L h⁻¹ kg⁻¹ was estimated as the minimum to avoid significant reductions in weight and shell length gain and increases in FCR values. Total ammonia nitrogen (TAN) and FAN concentrations were significantly correlated to dietary protein (P) (t = 6.63, p < 0.0001 and t = 6.41, p < 0.0001, respectively) and flow index (t = 5.42, p < 0.0001 and t = 3.9, p < 0.0002, respectively) and could be estimated using the models TAN = 9.73 P – 110.3 log (FI), and FAN = 0.132 P – 1.10 log (FI). Mean FAN concentrations were 67 and 41 % lower in tanks fed a diet containing 22 and 26 % protein respectively, when compared to tanks fed a 33 % protein diet. Supplementation with pure oxygen (103 ± 8 % saturation) improved shell length gain (t = 3.45, p = 0.026) in abalone exposed to high FAN (2.43 ± 1.1 μg L⁻¹) and low pH (7.6 ± 0.13), relative to a treatment with no oxygen supplementation (92 ± 6 % saturation). Addition of a sodium hydroxide solution resulted in elevated mean pH in treatment raceways when compared to control raceways. The increased pH resulted in significantly higher weight gain (g abalone⁻¹) (F₁·₁₂ = 4.51; p = 0.055) and shell length gain (mm abalone⁻¹) (F₁·₁₂ = 4.56; p = 0.054) at an α-error level of < 5.5 %. In two trials, weight gain and shell length gain were significantly correlated to pH (p < 0.001), and multiple regression of pH, dissolved oxygen and FAN consistently revealed pH to be the best predictor of growth. It is therefore suggested that decreasing pH is the first limiting water quality variable for abalone in serial-use raceways. As a decrease in water pH is linked to respiration by the abalone and subsequent increase in dissolved carbon dioxide (CO₂) concentration, future studies should examine the effects of CO₂ on H. midae metabolic rate, calcification rate and health. The results of this study will contribute toward our understanding of the specific water quality requirements for H. midae in commercial aquaculture systems, and influence the design and management procedures for abalone water reuse systems.
- Full Text:
- Date Issued: 2012
- Authors: Naylor, Matthew Aubrey
- Date: 2012
- Subjects: Haliotis midae -- South Africa , Abalone culture -- South Africa , Abalones -- Effect of water quality on , Abalones -- Nutrition -- South Africa , Abalones -- Feeding and feeds , Abalones -- Growth , Fish culture -- Water reuse
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5335 , http://hdl.handle.net/10962/d1005181 , Haliotis midae -- South Africa , Abalone culture -- South Africa , Abalones -- Effect of water quality on , Abalones -- Nutrition -- South Africa , Abalones -- Feeding and feeds , Abalones -- Growth , Fish culture -- Water reuse
- Description: An understanding of species specific water quality requirements is essential for efficient production of aquaculture products, an aspect not well documented for the land-based culture of the South African abalone, Haliotis midae. In order for the industry to remain competitive in international markets, efficient use of water supplies and the development of water reuse technology is needed. This study assessed the changes in water quality between tanks in a tiered serial-use raceway in relation to accumulated biomass and water flow and estimated the flow index (FI) (L h⁻¹ kg⁻¹) at which growth becomes significantly affected. The effect of dietary protein level, supplementation of pure oxygen and addition of sodium hydroxide (NaOH⁻) on water quality and fundamental production parameters in the serial-use raceways was also assessed. The serial-use raceways were used as a tool to create a range of water quality conditions at which the growth, feed conversion ratio (FCR) and condition factor (CF) of "cocktail" size (60 – 70 mm) H. midae could be monitored. The metabolic activity of the abalone resulted in a deterioration in water quality between tanks in series. pH (r² = 0.99; p < 0.001) and dissolved oxygen concentration (r² = 0.99; p < 0.001) were positively correlated with flow index (pH = 7.38 FI°·°² ; dissolved oxygen = 6.92 FI°·°⁴), while free ammonia nitrogen (FAN) (r² = 0.99, p < 0.001) and nitrite (NO²⁻ - N) (r² = 0.93, p < 0.001) were negatively correlated with flow index (FAN = 8.02 FI⁻°·⁷¹). Nitrite concentrations increased over time indicating colonisation of Nitrosomonas bacteria on the basket surfaces. A flow index of 7.2 – 9.0 L h⁻¹ kg⁻¹ was estimated as the minimum to avoid significant reductions in weight and shell length gain and increases in FCR values. Total ammonia nitrogen (TAN) and FAN concentrations were significantly correlated to dietary protein (P) (t = 6.63, p < 0.0001 and t = 6.41, p < 0.0001, respectively) and flow index (t = 5.42, p < 0.0001 and t = 3.9, p < 0.0002, respectively) and could be estimated using the models TAN = 9.73 P – 110.3 log (FI), and FAN = 0.132 P – 1.10 log (FI). Mean FAN concentrations were 67 and 41 % lower in tanks fed a diet containing 22 and 26 % protein respectively, when compared to tanks fed a 33 % protein diet. Supplementation with pure oxygen (103 ± 8 % saturation) improved shell length gain (t = 3.45, p = 0.026) in abalone exposed to high FAN (2.43 ± 1.1 μg L⁻¹) and low pH (7.6 ± 0.13), relative to a treatment with no oxygen supplementation (92 ± 6 % saturation). Addition of a sodium hydroxide solution resulted in elevated mean pH in treatment raceways when compared to control raceways. The increased pH resulted in significantly higher weight gain (g abalone⁻¹) (F₁·₁₂ = 4.51; p = 0.055) and shell length gain (mm abalone⁻¹) (F₁·₁₂ = 4.56; p = 0.054) at an α-error level of < 5.5 %. In two trials, weight gain and shell length gain were significantly correlated to pH (p < 0.001), and multiple regression of pH, dissolved oxygen and FAN consistently revealed pH to be the best predictor of growth. It is therefore suggested that decreasing pH is the first limiting water quality variable for abalone in serial-use raceways. As a decrease in water pH is linked to respiration by the abalone and subsequent increase in dissolved carbon dioxide (CO₂) concentration, future studies should examine the effects of CO₂ on H. midae metabolic rate, calcification rate and health. The results of this study will contribute toward our understanding of the specific water quality requirements for H. midae in commercial aquaculture systems, and influence the design and management procedures for abalone water reuse systems.
- Full Text:
- Date Issued: 2012
Videographic analysis of the Coelacanth, Latimeria Chalumnae, and associated habitats in the Isimangaliso Wetland Park, KwaZulu-Natal, South Africa
- Thornycroft, Rosanne Elizabeth
- Authors: Thornycroft, Rosanne Elizabeth
- Date: 2012
- Subjects: Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5333 , http://hdl.handle.net/10962/d1005179 , Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Description: Videography is a valuable tool in biological and ecological studies. Using video footage obtained during previous coelacanth surveys, this thesis investigated coelacanths and their associated habitats in the submarine canyons of iSimangaliso Wetland Park, South Africa. This thesis aimed to (1) describe the biological habitats within the submarine canyons, (2) determine coelacanth distribution within these habitats, and (3) assess the use of computer-aided identification to successfully identify individual coelacanths. Seven different habitat types were noted with the most distinctive being the canyon margins that consisted of dense agglomerations of gorgonians, wire and whip corals, and sponges. Results suggested that although substratum type has a great influence on invertebrate community structure in the canyons, depth is the principal factor. Coelacanths were associated with cave habitats within the steep rocky canyon walls. Habitat analyses allowed predictive classification tree models to be constructed. Depth, underlying percentage of rock, and percentage cover of gorgonians and sponges were the most important variables for determining coelacanth presence and absence. The overall correct classification rate for the model was estimated at 96.6%, correctly predicting coelacanth absence (> 99%) better than presence (60%). Because coelacanths have a unique spot pattern it was possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator the software accurately identified between 56 and 92% of the individuals. Identification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs. Each of the sections presented in this thesis represent a possible step towards analysing coelacanth-related habitats, locating and then analysing new habitats. Steps include first locating a population and then performing a habitat analysis. Coelacanth location within the different habitats can then be determined allowing the development of predictive models to potentially identify possible locations of new populations. The final step is to identify individual fish within the population for assessing demographic parameters and population monitoring.
- Full Text:
- Date Issued: 2012
- Authors: Thornycroft, Rosanne Elizabeth
- Date: 2012
- Subjects: Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5333 , http://hdl.handle.net/10962/d1005179 , Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Description: Videography is a valuable tool in biological and ecological studies. Using video footage obtained during previous coelacanth surveys, this thesis investigated coelacanths and their associated habitats in the submarine canyons of iSimangaliso Wetland Park, South Africa. This thesis aimed to (1) describe the biological habitats within the submarine canyons, (2) determine coelacanth distribution within these habitats, and (3) assess the use of computer-aided identification to successfully identify individual coelacanths. Seven different habitat types were noted with the most distinctive being the canyon margins that consisted of dense agglomerations of gorgonians, wire and whip corals, and sponges. Results suggested that although substratum type has a great influence on invertebrate community structure in the canyons, depth is the principal factor. Coelacanths were associated with cave habitats within the steep rocky canyon walls. Habitat analyses allowed predictive classification tree models to be constructed. Depth, underlying percentage of rock, and percentage cover of gorgonians and sponges were the most important variables for determining coelacanth presence and absence. The overall correct classification rate for the model was estimated at 96.6%, correctly predicting coelacanth absence (> 99%) better than presence (60%). Because coelacanths have a unique spot pattern it was possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator the software accurately identified between 56 and 92% of the individuals. Identification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs. Each of the sections presented in this thesis represent a possible step towards analysing coelacanth-related habitats, locating and then analysing new habitats. Steps include first locating a population and then performing a habitat analysis. Coelacanth location within the different habitats can then be determined allowing the development of predictive models to potentially identify possible locations of new populations. The final step is to identify individual fish within the population for assessing demographic parameters and population monitoring.
- Full Text:
- Date Issued: 2012
Using mobile information visualisation to support the analysis of telecommunication service ultilisation
- Authors: Twigg, Gianni Gurshwin
- Date: 2012
- Subjects: Telecommunication , Visualization , Technology -- Social aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10497 , http://hdl.handle.net/10948/d1020831
- Description: Telecommunication service utilisation (TSU) focuses on how customers make use of telecommunication services and can provide valuable information for decision making for improved customer service delivery. When a telecommunication service provider consults with customers, large amounts of static documentation on TSU data are compiled. Compiling this documentation for in-field investigation is manually intensive and the documentation does not effectively support decision making. Existing systems for visualising TSU data do not efficiently support in-field investigation of TSU and lack dynamic interaction. This highlights the need to investigate a solution to better support in-field investigation of TSU. This research followed a Design Science Research methodology to develop and evaluate a solution to solve the problem identified. The use of tablet devices for in-field investigation of TSU was identified as a suitable solution. Mobile information visualisation (MIV) techniques were investigated to determine appropriate display and interaction techniques for the visualisation of TSU data on a tablet device. An existing visualisation framework for TSU was identified and extended to incorporate touch-based interactions. Three service usage views were identified for visualising TSU, namely a Trend, Network and Detail Usage View. A Dashboard View was also identified to provide a quick reference view of the different views. A prototype called MobiTel was developed on a tablet device. MobiTel incorporated the identified information visualisation techniques. MobiTel was evaluated using an expert review and a user study to determine its usability and usefulness. The results indicated that MobiTel was perceived as being useful for in-field investigation and that the participants perceived the prototype to be easy to use and learn. The user study also indicated that the participants were satisfied with MobiTel. This research has determined that MIV techniques can be used for in-field investigation of TSU. Design recommendations were devised for designing an interactive mobile prototype for visualising service usage information. Future work will involve using map-based visualisation for visualising TSU data on different customer sites.
- Full Text:
- Date Issued: 2012
- Authors: Twigg, Gianni Gurshwin
- Date: 2012
- Subjects: Telecommunication , Visualization , Technology -- Social aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10497 , http://hdl.handle.net/10948/d1020831
- Description: Telecommunication service utilisation (TSU) focuses on how customers make use of telecommunication services and can provide valuable information for decision making for improved customer service delivery. When a telecommunication service provider consults with customers, large amounts of static documentation on TSU data are compiled. Compiling this documentation for in-field investigation is manually intensive and the documentation does not effectively support decision making. Existing systems for visualising TSU data do not efficiently support in-field investigation of TSU and lack dynamic interaction. This highlights the need to investigate a solution to better support in-field investigation of TSU. This research followed a Design Science Research methodology to develop and evaluate a solution to solve the problem identified. The use of tablet devices for in-field investigation of TSU was identified as a suitable solution. Mobile information visualisation (MIV) techniques were investigated to determine appropriate display and interaction techniques for the visualisation of TSU data on a tablet device. An existing visualisation framework for TSU was identified and extended to incorporate touch-based interactions. Three service usage views were identified for visualising TSU, namely a Trend, Network and Detail Usage View. A Dashboard View was also identified to provide a quick reference view of the different views. A prototype called MobiTel was developed on a tablet device. MobiTel incorporated the identified information visualisation techniques. MobiTel was evaluated using an expert review and a user study to determine its usability and usefulness. The results indicated that MobiTel was perceived as being useful for in-field investigation and that the participants perceived the prototype to be easy to use and learn. The user study also indicated that the participants were satisfied with MobiTel. This research has determined that MIV techniques can be used for in-field investigation of TSU. Design recommendations were devised for designing an interactive mobile prototype for visualising service usage information. Future work will involve using map-based visualisation for visualising TSU data on different customer sites.
- Full Text:
- Date Issued: 2012
Using co-located radars and instruments to analyse ionespheric events over South Africa
- Authors: Athieno, Racheal
- Date: 2012
- Subjects: Ionosphere -- Research -- South Africa , Space environment -- Research -- South Africa , Meteorology -- Research -- South Africa , Ionosondes -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5493 , http://hdl.handle.net/10962/d1005279 , Ionosphere -- Research -- South Africa , Space environment -- Research -- South Africa , Meteorology -- Research -- South Africa , Ionosondes -- Research -- South Africa
- Description: Space weather and its effect on technological systems are important for scientific research. Developing an understanding of the behaviour, sources and effects of ionospheric events form a basis for improving space weather prediction. This thesis attempts to use co-located radars and instruments for the analysis of ionospheric events over South Africa. The HF Doppler radar, ionosonde, Global Positioning System (GPS) and GPS ionospheric scintillation monitor (GISTM) receivers are co-located in Hermanus (34.4°S, 19.2°E), one of the observatories for the space science directorate of the South African National Space Agency (SANSA). Data was obtained from these radars and instruments and analysed for ionospheric events. Only the Hermanus station was selected for this analysis, because it is currently the only South African station that hosts all the mentioned radars and instruments. Ionospheric events identified include wave-like structures, Doppler spread, sudden frequency deviations and ionospheric oscillations associated with geomagnetic pulsations. For the purpose of this work, ionospheric events are defined as any unusual structures observed on the received signal and inferred from observations made by the HF Doppler radar. They were identified by visual inspection of the Doppler shift spectrograms. The magnitude and nature of the events vary, depending on their source and were observed by all, some or one instrument. This study suggests that the inclusion of a wider data coverage and more stations in South Africa merit consideration, especially since plans are underway to host a co-located radar network similar to that in Hermanus at at least three additional observatory sites in South Africa. This study lays a foundation for multi-station co-located radar and instrument observation and analysis of ionospheric events which should enhance the accuracy of space weather and HF communication prediction.
- Full Text:
- Date Issued: 2012
- Authors: Athieno, Racheal
- Date: 2012
- Subjects: Ionosphere -- Research -- South Africa , Space environment -- Research -- South Africa , Meteorology -- Research -- South Africa , Ionosondes -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5493 , http://hdl.handle.net/10962/d1005279 , Ionosphere -- Research -- South Africa , Space environment -- Research -- South Africa , Meteorology -- Research -- South Africa , Ionosondes -- Research -- South Africa
- Description: Space weather and its effect on technological systems are important for scientific research. Developing an understanding of the behaviour, sources and effects of ionospheric events form a basis for improving space weather prediction. This thesis attempts to use co-located radars and instruments for the analysis of ionospheric events over South Africa. The HF Doppler radar, ionosonde, Global Positioning System (GPS) and GPS ionospheric scintillation monitor (GISTM) receivers are co-located in Hermanus (34.4°S, 19.2°E), one of the observatories for the space science directorate of the South African National Space Agency (SANSA). Data was obtained from these radars and instruments and analysed for ionospheric events. Only the Hermanus station was selected for this analysis, because it is currently the only South African station that hosts all the mentioned radars and instruments. Ionospheric events identified include wave-like structures, Doppler spread, sudden frequency deviations and ionospheric oscillations associated with geomagnetic pulsations. For the purpose of this work, ionospheric events are defined as any unusual structures observed on the received signal and inferred from observations made by the HF Doppler radar. They were identified by visual inspection of the Doppler shift spectrograms. The magnitude and nature of the events vary, depending on their source and were observed by all, some or one instrument. This study suggests that the inclusion of a wider data coverage and more stations in South Africa merit consideration, especially since plans are underway to host a co-located radar network similar to that in Hermanus at at least three additional observatory sites in South Africa. This study lays a foundation for multi-station co-located radar and instrument observation and analysis of ionospheric events which should enhance the accuracy of space weather and HF communication prediction.
- Full Text:
- Date Issued: 2012
Using an intelligent self-service solution to support telecommunication service provisioning
- Authors: Barlow, Sherwin Riaan
- Date: 2012
- Subjects: Telecommunication systems -- Management , Electronic commerce -- Computer programs , Web applications
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10484 , http://hdl.handle.net/10948/d1013417
- Description: The increasing competition between telecommunication service providers (TSPs) and the large amounts of human resource costs incurred to provision telecommunication services to small, medium and micro enterprises (SMMEs), highlight the need for effective self-service provisioning methods to reduce costs. Existing service provisioning methods do not effectively support SMMEs in the service provisioning process. The current methods used are manual and Web-based. The manual service provisioning method is labour and time-intensive. TSPs are being forced to cut human resource costs as the profit margins for provisioning services are narrow due to competition. The current web-based systems do not allow SMMEs to effectively purchase services as they provide long textual lists to consult and limited information about services. The objective of this research was to develop an intelligent web-based self-service system to support SMMEs in telecommunication service provisioning, using a Design Science Research methodology. A constraint-based, knowledge-based recommender system was selected as the most appropriate intelligent system to support telecommunication service provisioning. A prototype called SelPro was developed as a solution to address the shortcomings of the current ineffective service provisioning methods available for SMMEs. SelPro incorporates an interactive wizard-style user interface with dynamic recommendations to support novice users as well as an expert interface which provides less user support. An expert review and a user study were conducted to determine if SelPro was usable, useful and effective. SelPro was perceived as being usable for SMMEs wishing to purchase telecommunication services. Expert participants were satisfied with the usability of SelPro and perceived it as being useful, easy to use and easy to learn. SelPro was considered effective because of the high task success ratings provided by the participants using the two interfaces. The research determined that intelligent web-based self-service provisioning can be used to effectively support SMMEs in telecommunication service provisioning. General design recommendations for similar systems were proposed and future work will involve using intelligent systems to support large enterprises in telecommunication service provisioning.
- Full Text:
- Date Issued: 2012
- Authors: Barlow, Sherwin Riaan
- Date: 2012
- Subjects: Telecommunication systems -- Management , Electronic commerce -- Computer programs , Web applications
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10484 , http://hdl.handle.net/10948/d1013417
- Description: The increasing competition between telecommunication service providers (TSPs) and the large amounts of human resource costs incurred to provision telecommunication services to small, medium and micro enterprises (SMMEs), highlight the need for effective self-service provisioning methods to reduce costs. Existing service provisioning methods do not effectively support SMMEs in the service provisioning process. The current methods used are manual and Web-based. The manual service provisioning method is labour and time-intensive. TSPs are being forced to cut human resource costs as the profit margins for provisioning services are narrow due to competition. The current web-based systems do not allow SMMEs to effectively purchase services as they provide long textual lists to consult and limited information about services. The objective of this research was to develop an intelligent web-based self-service system to support SMMEs in telecommunication service provisioning, using a Design Science Research methodology. A constraint-based, knowledge-based recommender system was selected as the most appropriate intelligent system to support telecommunication service provisioning. A prototype called SelPro was developed as a solution to address the shortcomings of the current ineffective service provisioning methods available for SMMEs. SelPro incorporates an interactive wizard-style user interface with dynamic recommendations to support novice users as well as an expert interface which provides less user support. An expert review and a user study were conducted to determine if SelPro was usable, useful and effective. SelPro was perceived as being usable for SMMEs wishing to purchase telecommunication services. Expert participants were satisfied with the usability of SelPro and perceived it as being useful, easy to use and easy to learn. SelPro was considered effective because of the high task success ratings provided by the participants using the two interfaces. The research determined that intelligent web-based self-service provisioning can be used to effectively support SMMEs in telecommunication service provisioning. General design recommendations for similar systems were proposed and future work will involve using intelligent systems to support large enterprises in telecommunication service provisioning.
- Full Text:
- Date Issued: 2012
Understanding the biomolecular interactions involved in dimerisation of the Saccharomyces cerevisiae eukaryotic translation initiation factor 5A
- Authors: Charlton, Jane Laura
- Date: 2012
- Subjects: Proteins -- Synthesis -- Research , Saccharomyces cerevisiae -- Research , Dimers , Dimers -- Research , Eukaryotic cells -- Research , Yeast -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4057 , http://hdl.handle.net/10962/d1004118 , Proteins -- Synthesis -- Research , Saccharomyces cerevisiae -- Research , Dimers , Dimers -- Research , Eukaryotic cells -- Research , Yeast -- Research
- Description: Translation initiation factor 5A (IF5A) is an essential, highly conserved protein found within all eukaryotic (eIF5A) and archaeal (aIF5A) cells. The IF5A protein is unique in that it contains the amino acid hypusine; a two-step post translational modification of a single, conserved lysine residue. Although hypusination of eIF5A is vital for eukaryotic cell viability, the primary role of the protein and its hypusine side chain remain a mystery. eIF5A, initially identified as a translation initiation factor, is not required for global protein synthesis leading to the prevailing proposal that eIF5A is purely involved in the translation of a select subset of mRNAs. Recently a number of mutational studies have focused on the conserved, hypusine-containing loop region of eIF5A where specific residues have been found to be essential for activity without affecting hypusination. It has been postulated that eIF5A exists as a dimer (40 kDa) under native conditions and that these residues may be at the interface of dimerisation. The aim of this research was therefore to conduct a mutational analysis of the loop region in support of this hypothesis. A functional analysis of the Saccharomyces cerevisiae eIF5A mutant proteins K48D, G50A, H52A and K56A revealed that these substitutions impaired growth to varying degrees in vivo with G50A and K48D mutant proteins displaying the most convincing defects. Gel filtration profiles gave unexpected results determining eIF5A mutant and wild type proteins to have a native molecular weight of 30 to 31 kDa, suggesting that the eIF5A oligomeric state may be transitory and subject to certain conditions. The inconclusive results obtained from using gel filtration studies led to an investigation into the feasibility of producing native, hypusinated peptides for future structural studies using nuclear magnetic resonance. Hypusinated and unhypusinated eIF5A were successfully separated into their domains making this a possibility. Finally, this study proposes a role for eIF5A in eukaryotic IRES-driven translation initiation.
- Full Text:
- Date Issued: 2012
- Authors: Charlton, Jane Laura
- Date: 2012
- Subjects: Proteins -- Synthesis -- Research , Saccharomyces cerevisiae -- Research , Dimers , Dimers -- Research , Eukaryotic cells -- Research , Yeast -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4057 , http://hdl.handle.net/10962/d1004118 , Proteins -- Synthesis -- Research , Saccharomyces cerevisiae -- Research , Dimers , Dimers -- Research , Eukaryotic cells -- Research , Yeast -- Research
- Description: Translation initiation factor 5A (IF5A) is an essential, highly conserved protein found within all eukaryotic (eIF5A) and archaeal (aIF5A) cells. The IF5A protein is unique in that it contains the amino acid hypusine; a two-step post translational modification of a single, conserved lysine residue. Although hypusination of eIF5A is vital for eukaryotic cell viability, the primary role of the protein and its hypusine side chain remain a mystery. eIF5A, initially identified as a translation initiation factor, is not required for global protein synthesis leading to the prevailing proposal that eIF5A is purely involved in the translation of a select subset of mRNAs. Recently a number of mutational studies have focused on the conserved, hypusine-containing loop region of eIF5A where specific residues have been found to be essential for activity without affecting hypusination. It has been postulated that eIF5A exists as a dimer (40 kDa) under native conditions and that these residues may be at the interface of dimerisation. The aim of this research was therefore to conduct a mutational analysis of the loop region in support of this hypothesis. A functional analysis of the Saccharomyces cerevisiae eIF5A mutant proteins K48D, G50A, H52A and K56A revealed that these substitutions impaired growth to varying degrees in vivo with G50A and K48D mutant proteins displaying the most convincing defects. Gel filtration profiles gave unexpected results determining eIF5A mutant and wild type proteins to have a native molecular weight of 30 to 31 kDa, suggesting that the eIF5A oligomeric state may be transitory and subject to certain conditions. The inconclusive results obtained from using gel filtration studies led to an investigation into the feasibility of producing native, hypusinated peptides for future structural studies using nuclear magnetic resonance. Hypusinated and unhypusinated eIF5A were successfully separated into their domains making this a possibility. Finally, this study proposes a role for eIF5A in eukaryotic IRES-driven translation initiation.
- Full Text:
- Date Issued: 2012
Trophic ecology of breeding northern rockhopper penguins, Eudyptes Moseleyi, at Tristan da Cunha, South Atlantic Ocean
- Authors: Booth, Jenny Marie
- Date: 2012
- Subjects: Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5788 , http://hdl.handle.net/10962/d1005476 , Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Description: Northern Rockhopper penguin populations, Eudyptes moseleyi, are declining globally, and at Tristan da Cunha have undergone severe declines (> 90% in the last 130 years), the cause(s)of which are unknown. There is a paucity of data on this species in the South Atlantic Ocean, therefore their trophic ecology at Tristan da Cunha was studied, specifically focusing on diet, using stomach content analysis and stable isotope analysis (SIA), in conjunction with an analysis of diving behaviour, assessed using temperature-depth recorders. In order to evaluate the influence of gender on foraging, a morphometric investigation of sexual dimorphism was confirmed using molecular analysis. Additionally, plasma corticosterone levels were measured to examine breeding stage and presence of blood parasites as potential sources of stress during the breeding season. Northern Rockhopper penguins at Tristan da Cunha displayed a high degree of foraging plasticity, and fed opportunistically on a wide variety of prey, probably reflecting local small-scale changes in prey distribution. Zooplankton dominated (by mass) the diet of guard stage females, whereas small meso-pelagic fish (predominantly Photichthyidae)dominated diet of adults of both sexes in the crèche stage, with cephalopods contributing equally in both stages. Adults consistently fed chicks on lower-trophic level prey (assessed using SIA), probably zooplankton, than they consumed themselves indicating that the increasing demands of growing chicks were not met by adults through provisioning of higher- quality prey. SIA also indicated that adults foraged in different oceanic water masses when feeding for self-maintenance and for chick provisioning, thus temporally segregating the prey consumed for different purposes. It is possible that adults ‘selected’ these higher quality prey for themselves, or this may be a reflection of opportunistic behaviour. At Tristan da Cunha sexual dimorphism was observed in culmen dimensions (length, depth, width), with males having larger beaks and feeding on larger individuals of squid and fish than females. No sexual segregation in terms of foraging habitat (i.e. different water masses, based on ð¹³N or trophic level ð¹⁵N) during the breeding season or pre-moult period was revealed through SIA, and stomach content analysis revealed no sexual differences in prey species targeted. The results of SIA of feathers indicate that during the pre-moult period birds foraged in different water masses than during the breeding period. The fact that throughout the breeding season birds foraged in similar habitats suggests no intra-specific competition, despite both sexes feeding on the same prey.Birds were generally diurnal, daily foragers (12 – 16 hr trips), with extended trips (maximum duration 35.5 hours) and nocturnal diving recorded in a few individuals. Birds dived well within their physiological limits, predominantly utilising the upper 20m of the water column, employing two different strategies to target different prey items. Long, deep (30 – 40 m), energetically costly dives were performed when targeting energy-rich prey (fish), and a greater number of shorter, shallower (5 – 20 m), energy-efficient dives were performed when targeting prey with a lower energy content (zooplankton). More than half of the sampled study population were infected with the intra-cellular blood parasite Babesia, but infection showed no relationship to body mass, corticosterone levels or breeding success. Fasting birds showed no signs of elevated corticosterone levels, suggesting they had acquired sufficient fat reserves prior to breeding. Failed breeders did not exhibit elevated corticosterone levels. Tristan skuas, Catharacta antarctica hamiltoni, were observed to be a significant cause of egg and chick mortality. The absence of sex-based differences in foraging, and the absence of any signs of stress in relation to body mass, presence of Babesia or breeding stage, suggest that there are no obvious signs of high levels of stress or food limitations during breeding at Tristan da Cunha.
- Full Text:
- Date Issued: 2012
- Authors: Booth, Jenny Marie
- Date: 2012
- Subjects: Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5788 , http://hdl.handle.net/10962/d1005476 , Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Description: Northern Rockhopper penguin populations, Eudyptes moseleyi, are declining globally, and at Tristan da Cunha have undergone severe declines (> 90% in the last 130 years), the cause(s)of which are unknown. There is a paucity of data on this species in the South Atlantic Ocean, therefore their trophic ecology at Tristan da Cunha was studied, specifically focusing on diet, using stomach content analysis and stable isotope analysis (SIA), in conjunction with an analysis of diving behaviour, assessed using temperature-depth recorders. In order to evaluate the influence of gender on foraging, a morphometric investigation of sexual dimorphism was confirmed using molecular analysis. Additionally, plasma corticosterone levels were measured to examine breeding stage and presence of blood parasites as potential sources of stress during the breeding season. Northern Rockhopper penguins at Tristan da Cunha displayed a high degree of foraging plasticity, and fed opportunistically on a wide variety of prey, probably reflecting local small-scale changes in prey distribution. Zooplankton dominated (by mass) the diet of guard stage females, whereas small meso-pelagic fish (predominantly Photichthyidae)dominated diet of adults of both sexes in the crèche stage, with cephalopods contributing equally in both stages. Adults consistently fed chicks on lower-trophic level prey (assessed using SIA), probably zooplankton, than they consumed themselves indicating that the increasing demands of growing chicks were not met by adults through provisioning of higher- quality prey. SIA also indicated that adults foraged in different oceanic water masses when feeding for self-maintenance and for chick provisioning, thus temporally segregating the prey consumed for different purposes. It is possible that adults ‘selected’ these higher quality prey for themselves, or this may be a reflection of opportunistic behaviour. At Tristan da Cunha sexual dimorphism was observed in culmen dimensions (length, depth, width), with males having larger beaks and feeding on larger individuals of squid and fish than females. No sexual segregation in terms of foraging habitat (i.e. different water masses, based on ð¹³N or trophic level ð¹⁵N) during the breeding season or pre-moult period was revealed through SIA, and stomach content analysis revealed no sexual differences in prey species targeted. The results of SIA of feathers indicate that during the pre-moult period birds foraged in different water masses than during the breeding period. The fact that throughout the breeding season birds foraged in similar habitats suggests no intra-specific competition, despite both sexes feeding on the same prey.Birds were generally diurnal, daily foragers (12 – 16 hr trips), with extended trips (maximum duration 35.5 hours) and nocturnal diving recorded in a few individuals. Birds dived well within their physiological limits, predominantly utilising the upper 20m of the water column, employing two different strategies to target different prey items. Long, deep (30 – 40 m), energetically costly dives were performed when targeting energy-rich prey (fish), and a greater number of shorter, shallower (5 – 20 m), energy-efficient dives were performed when targeting prey with a lower energy content (zooplankton). More than half of the sampled study population were infected with the intra-cellular blood parasite Babesia, but infection showed no relationship to body mass, corticosterone levels or breeding success. Fasting birds showed no signs of elevated corticosterone levels, suggesting they had acquired sufficient fat reserves prior to breeding. Failed breeders did not exhibit elevated corticosterone levels. Tristan skuas, Catharacta antarctica hamiltoni, were observed to be a significant cause of egg and chick mortality. The absence of sex-based differences in foraging, and the absence of any signs of stress in relation to body mass, presence of Babesia or breeding stage, suggest that there are no obvious signs of high levels of stress or food limitations during breeding at Tristan da Cunha.
- Full Text:
- Date Issued: 2012
Towards integrated catchment management : challenges surrounding implementation in the Gamtoos River catchment
- Authors: Materechera, Fenji
- Date: 2012
- Subjects: Watershed management -- South Africa , Watershed management -- South Africa -- Citizen participation , Integrated water development -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10664 , http://hdl.handle.net/10948/d1018553
- Description: Water resource management has become a pertinent issue of global environmental concern in response to the conditions of a growing global population, increasing development and a limited freshwater supply. It is against the backdrop of such conditions that effective water resource management has gained popularity in seeking to ensure that the needs of the growing population will be met and secured for future generations. The notion of integrated water resource management (IWRM) is a perspective on water resource management that has evolved out of the global opinion that social and ecological systems are linked and therefore cannot be managed separately. The department of water affairs (DWA) in South Africa highlights the importance of approaching management of water resources from a catchment perspective which forms the basis for a particular integrated approach to management called integrated catchment management (ICM). ICM recognizes the catchment as the correct administrative unit for management. It integrates water resources and the land that forms the catchment area in planning and management. Researchers have described the implementation of ICM as being complicated and difficult. This is no exception to South Africa. Principles of ICM have received widespread prominence in South Africa as they have been incorporated into national water policy. Actual implementation however is still in its infancy. The study is therefore a case study of ICM with respect to factors influencing implementation amongst different stakeholders. The study aims to explore the theme of implementation of ICM within the context of the Gamtoos River Catchment with a view toward identifying and addressing challenges that may be more broadly applicable. The study adopts an inductive, exploratory approach to the connection between theory and practice. A systems-based framework characterized by sequential steps similar to that employed in a case study conducted by Bellamy et al. (2001) in Queensland Australia is used to facilitate the evaluation of ICM in the Gamtoos River Catchment. The evaluation is achieved through a three step process of exploration in the current study. Triangulation is applied to the choice of methods of analysis which involves the use of a global analysis method, the use of learning scenarios and a grounded theory method. Findings reveal seven core themes which help to provide a detailed, contextual understanding relating to the status quo for ICM in the catchment. Results from a grounded theory analysis summarized the main challenges to implementation into five broad categories. Based on this analysis method and the application of the three learning scenarios for the Gamtoos River Catchment, the extent to which these challenges exist was discovered. The state of ICM in the catchment was classified as falling within a condition of a level of success being achieved with room for improvement to a condition of optimal ICM. The study concludes that based on the context of ICM being an example of a Complex Adaptive Systems (CAS), this state of ICM in the Gamtoos River Catchment is subject to change. This therefore necessitates the consideration of approaches to implementation that are adaptive to change. Findings may serve to inform decision making on how ICM can be effectively implemented elsewhere in a South African context.
- Full Text:
- Date Issued: 2012
- Authors: Materechera, Fenji
- Date: 2012
- Subjects: Watershed management -- South Africa , Watershed management -- South Africa -- Citizen participation , Integrated water development -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10664 , http://hdl.handle.net/10948/d1018553
- Description: Water resource management has become a pertinent issue of global environmental concern in response to the conditions of a growing global population, increasing development and a limited freshwater supply. It is against the backdrop of such conditions that effective water resource management has gained popularity in seeking to ensure that the needs of the growing population will be met and secured for future generations. The notion of integrated water resource management (IWRM) is a perspective on water resource management that has evolved out of the global opinion that social and ecological systems are linked and therefore cannot be managed separately. The department of water affairs (DWA) in South Africa highlights the importance of approaching management of water resources from a catchment perspective which forms the basis for a particular integrated approach to management called integrated catchment management (ICM). ICM recognizes the catchment as the correct administrative unit for management. It integrates water resources and the land that forms the catchment area in planning and management. Researchers have described the implementation of ICM as being complicated and difficult. This is no exception to South Africa. Principles of ICM have received widespread prominence in South Africa as they have been incorporated into national water policy. Actual implementation however is still in its infancy. The study is therefore a case study of ICM with respect to factors influencing implementation amongst different stakeholders. The study aims to explore the theme of implementation of ICM within the context of the Gamtoos River Catchment with a view toward identifying and addressing challenges that may be more broadly applicable. The study adopts an inductive, exploratory approach to the connection between theory and practice. A systems-based framework characterized by sequential steps similar to that employed in a case study conducted by Bellamy et al. (2001) in Queensland Australia is used to facilitate the evaluation of ICM in the Gamtoos River Catchment. The evaluation is achieved through a three step process of exploration in the current study. Triangulation is applied to the choice of methods of analysis which involves the use of a global analysis method, the use of learning scenarios and a grounded theory method. Findings reveal seven core themes which help to provide a detailed, contextual understanding relating to the status quo for ICM in the catchment. Results from a grounded theory analysis summarized the main challenges to implementation into five broad categories. Based on this analysis method and the application of the three learning scenarios for the Gamtoos River Catchment, the extent to which these challenges exist was discovered. The state of ICM in the catchment was classified as falling within a condition of a level of success being achieved with room for improvement to a condition of optimal ICM. The study concludes that based on the context of ICM being an example of a Complex Adaptive Systems (CAS), this state of ICM in the Gamtoos River Catchment is subject to change. This therefore necessitates the consideration of approaches to implementation that are adaptive to change. Findings may serve to inform decision making on how ICM can be effectively implemented elsewhere in a South African context.
- Full Text:
- Date Issued: 2012
Towards a methodology for identifying potential sites for cemeteries
- Authors: Judge, Richard David Eadie
- Date: 2012
- Subjects: Cemeteries , Environmental impact analysis , Groundwater , Pollution
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10649 , http://hdl.handle.net/10948/d1008048 , Cemeteries , Environmental impact analysis , Groundwater , Pollution
- Description: Due to death being an extremely sensitive issue, the topic of cemeteries and associated environmental impacts is often left outside the mainstream environmental critique. However, this is a topic becoming more prevalent as the population numbers and the death rate increases, while the amount of available land decreases. Recent research has indicated that poorly sited cemeteries may pose a significant threat to groundwater resources with the consequential potential for severe health hazards. This has resulted in the need for a method of determining the acceptability of a given area for the establishment of a cemetery in a South African context. Cemeteries should be sited in such a way as to mitigate potential public health and safety concerns, minimise associated environmental impacts and provide a method of body disposal that is economically viable. This study therefore provides an integrated methodology to identify and assess a given area and rank a number of potential sites, ultimately determining a single cemetery site which proves to be acceptable for the establishment of a cemetery. Cemetery site selection should be based on the factors affecting the pollution potential of a proposed cemetery. These factors were identified and quantified based on research into the mechanisms of cemetery site pollution resulting in a number of fatal flaws and criteria deemed decisive when selecting a potential cemetery site. The assessment of a site with regards to these criteria and fatal flaws is undertaken through the use of GIS analysis software utilising data layers containing information on the site selection criteria, by investigating existing studies, literature or reports relating to the relevant area, or through field investigations. Although these criteria are vital when determining the specific characteristics of a site in terms of its pollution potential, a method of assessing a number of potential sites with regards to these criteria is vital. To this end, a multi-criteria ranking matrix has been developed, allowing for an objective method of assessing individual sites and thus indicating which sites are more suited for the establishment of a cemetery. The ranking matrix identifies a range of values for each criterion, therefore identifying a minimum and maximum allowable value. A site is then assessed with regards to these criteria in relation to the values identified in the ranking matrix. Each criteria is assigned a score according to the site conditions. Once the criteria for each site has been assessed and scored, the results can be tallied allowing the sites to be ranked according to which site proved to be the most acceptable for a cemetery based on the findings of the application of the site selection criteria. The methodology developed in this study is unique to previous studies in that it provides an integrated and staged approach to identifying, assessing and applying the criteria affecting the pollution potential of a cemetery. The methodology also provides a means of ranking a number of potential sites so to determine the most suitable. Furthermore, the criteria deemed as decisive in previous investigations were in most cases not quantified by the relevant authors, therefore leaving many of the criteria values up for interpretation. For this methodology to be affective, all criteria must be quantified therefore identifying maximum and minimum allowable limits for each. This study applies minimum and maximum allowable limits to these criteria, therefore aiding in the ranking process. The integrated methodology developed was then applied to a case study where by the effectiveness in identifying a number of potential cemetery sites could be tested. Subsequent to the application of this methodology to a case study, it was concluded that an additional two criteria, not identified in previous investigations, needed to be assessed to more adequately determine the suitability or otherwise of a site for a cemetery. Ultimately, twelve major criteria have been proposed for use as the basis of the methodology. The methodology and pertinent criteria proposed in this study should be compiled as a standard for planning authorities and consultants to use as a method of determining a number of potential environmentally sound cemetery sites.
- Full Text:
- Date Issued: 2012
- Authors: Judge, Richard David Eadie
- Date: 2012
- Subjects: Cemeteries , Environmental impact analysis , Groundwater , Pollution
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10649 , http://hdl.handle.net/10948/d1008048 , Cemeteries , Environmental impact analysis , Groundwater , Pollution
- Description: Due to death being an extremely sensitive issue, the topic of cemeteries and associated environmental impacts is often left outside the mainstream environmental critique. However, this is a topic becoming more prevalent as the population numbers and the death rate increases, while the amount of available land decreases. Recent research has indicated that poorly sited cemeteries may pose a significant threat to groundwater resources with the consequential potential for severe health hazards. This has resulted in the need for a method of determining the acceptability of a given area for the establishment of a cemetery in a South African context. Cemeteries should be sited in such a way as to mitigate potential public health and safety concerns, minimise associated environmental impacts and provide a method of body disposal that is economically viable. This study therefore provides an integrated methodology to identify and assess a given area and rank a number of potential sites, ultimately determining a single cemetery site which proves to be acceptable for the establishment of a cemetery. Cemetery site selection should be based on the factors affecting the pollution potential of a proposed cemetery. These factors were identified and quantified based on research into the mechanisms of cemetery site pollution resulting in a number of fatal flaws and criteria deemed decisive when selecting a potential cemetery site. The assessment of a site with regards to these criteria and fatal flaws is undertaken through the use of GIS analysis software utilising data layers containing information on the site selection criteria, by investigating existing studies, literature or reports relating to the relevant area, or through field investigations. Although these criteria are vital when determining the specific characteristics of a site in terms of its pollution potential, a method of assessing a number of potential sites with regards to these criteria is vital. To this end, a multi-criteria ranking matrix has been developed, allowing for an objective method of assessing individual sites and thus indicating which sites are more suited for the establishment of a cemetery. The ranking matrix identifies a range of values for each criterion, therefore identifying a minimum and maximum allowable value. A site is then assessed with regards to these criteria in relation to the values identified in the ranking matrix. Each criteria is assigned a score according to the site conditions. Once the criteria for each site has been assessed and scored, the results can be tallied allowing the sites to be ranked according to which site proved to be the most acceptable for a cemetery based on the findings of the application of the site selection criteria. The methodology developed in this study is unique to previous studies in that it provides an integrated and staged approach to identifying, assessing and applying the criteria affecting the pollution potential of a cemetery. The methodology also provides a means of ranking a number of potential sites so to determine the most suitable. Furthermore, the criteria deemed as decisive in previous investigations were in most cases not quantified by the relevant authors, therefore leaving many of the criteria values up for interpretation. For this methodology to be affective, all criteria must be quantified therefore identifying maximum and minimum allowable limits for each. This study applies minimum and maximum allowable limits to these criteria, therefore aiding in the ranking process. The integrated methodology developed was then applied to a case study where by the effectiveness in identifying a number of potential cemetery sites could be tested. Subsequent to the application of this methodology to a case study, it was concluded that an additional two criteria, not identified in previous investigations, needed to be assessed to more adequately determine the suitability or otherwise of a site for a cemetery. Ultimately, twelve major criteria have been proposed for use as the basis of the methodology. The methodology and pertinent criteria proposed in this study should be compiled as a standard for planning authorities and consultants to use as a method of determining a number of potential environmentally sound cemetery sites.
- Full Text:
- Date Issued: 2012
The trophic ecology of parrotfish of Zanzibar application of stable isotope analysis
- Plass-Johnson, Jeremiah Grahm
- Authors: Plass-Johnson, Jeremiah Grahm
- Date: 2012
- Subjects: Parrotfishes -- Tanzania -- Zanzibar , Parrotfishes , Parrotfishes -- Ecology -- Tanzania -- Zanzibar , Parrotfishes -- Behavior -- Tanzania -- Zanzibar , Parrotfishes -- Food -- Tanzania -- Zanzibar , Scleractinia -- Tanzania -- Zanzibar , Algae -- Tanzania -- Zanzibar , Coral reefs and islands -- Tanzania -- Zanzibar , Coral reef fishes -- Tanzania -- Zanzibar , Stable isotopes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5789 , http://hdl.handle.net/10962/d1005477 , Parrotfishes -- Tanzania -- Zanzibar , Parrotfishes , Parrotfishes -- Ecology -- Tanzania -- Zanzibar , Parrotfishes -- Behavior -- Tanzania -- Zanzibar , Parrotfishes -- Food -- Tanzania -- Zanzibar , Scleractinia -- Tanzania -- Zanzibar , Algae -- Tanzania -- Zanzibar , Coral reefs and islands -- Tanzania -- Zanzibar , Coral reef fishes -- Tanzania -- Zanzibar , Stable isotopes
- Description: Parrotfish are a critical component of the herbivore functional group on tropical coral reefs around the world because they mediate competition that occurs between algae and scleractinian corals. Also, because of their feeding technique, which consists of rasping at the substratum with their beak-like teeth, they play an important role in carbonate turnover and the clearing of reef surface area for the settlement of new sessile organisms. Because of these roles, parrotfishes are an important structuring component of coral reef communities. However, individual species can play different roles depending on their physiology, behaviour and ecology. Despite the possible ecological differences that may exist amongst species, specific roles of the fishes remain unclear as the group is most often studied at higher community levels. This thesis applied stable isotope analysis to differing levels of organisation within a parrotfish community to help elucidate their trophic ecology on coral reefs in Zanzibar. Firstly, blood and muscle tissues were compared to identify differences in their isotope signatures. In other organisms, blood turns over faster than muscle tissue so that muscle tissue represents the diet as integrated over a longer period of time. In most species of parrotfish the blood and muscle δ¹³C signatures were not found to be significantly different, but the δ¹⁵N signatures were significantly different between tissues. This indicated that the δ¹³C signature of both tissues would reveal similar dietary information. Conversely, differences in the δ¹⁵N signature indicated that the nitrogen relationship between tissues was more complicated. Secondly, spatial variability in parrotfish, coral, detritus and macroalgae isotope signatures was assessed at different scales. In macroalgae and coral tissues (zooxanthellae and polyp treated separately), the δ¹³C signatures were shown to differ with depth, presumably because of changes in photosynthetic processes related to depth-associated changes in light. While δ¹⁵N signatures were not affected by depth, all organisms showed enrichment at the Nyange reef, the closest reef to the capital of Zanzibar, Stone Town, presumably reflecting the effects of sewage outfall. These results show that processes that impact the δ¹⁵N signatures of primary producers (macroalgae and zooxanthellae) can be traced to higher trophic levels (coral polyps and fish). Lastly, δ¹³C and δ¹⁵N signatures were used to identify ontogenetic dietary changes in multiple species of parrotfish. Four of the species showed stages that varied from the diets that are normally assumed on the basis of their dentition and feeding technique. This indicates that functional roles based on taxonomy or morphology may fail to include possible ontogenetic dietary changes, and may also fail to elucidate the full impact a species could have on coral reef communities. The conclusions from these studies indicate that the species-specific ecological role of parrotfish in coral reef communities can be complex within and between species, and may differ amongst reefs. In light of the natural and anthropogenic pressures that affect coral reef systems, management decisions based on a more complete understanding of the role of these fish in coral reef communities will help decisions that maintain resilience in these fragile systems.
- Full Text:
- Date Issued: 2012
- Authors: Plass-Johnson, Jeremiah Grahm
- Date: 2012
- Subjects: Parrotfishes -- Tanzania -- Zanzibar , Parrotfishes , Parrotfishes -- Ecology -- Tanzania -- Zanzibar , Parrotfishes -- Behavior -- Tanzania -- Zanzibar , Parrotfishes -- Food -- Tanzania -- Zanzibar , Scleractinia -- Tanzania -- Zanzibar , Algae -- Tanzania -- Zanzibar , Coral reefs and islands -- Tanzania -- Zanzibar , Coral reef fishes -- Tanzania -- Zanzibar , Stable isotopes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5789 , http://hdl.handle.net/10962/d1005477 , Parrotfishes -- Tanzania -- Zanzibar , Parrotfishes , Parrotfishes -- Ecology -- Tanzania -- Zanzibar , Parrotfishes -- Behavior -- Tanzania -- Zanzibar , Parrotfishes -- Food -- Tanzania -- Zanzibar , Scleractinia -- Tanzania -- Zanzibar , Algae -- Tanzania -- Zanzibar , Coral reefs and islands -- Tanzania -- Zanzibar , Coral reef fishes -- Tanzania -- Zanzibar , Stable isotopes
- Description: Parrotfish are a critical component of the herbivore functional group on tropical coral reefs around the world because they mediate competition that occurs between algae and scleractinian corals. Also, because of their feeding technique, which consists of rasping at the substratum with their beak-like teeth, they play an important role in carbonate turnover and the clearing of reef surface area for the settlement of new sessile organisms. Because of these roles, parrotfishes are an important structuring component of coral reef communities. However, individual species can play different roles depending on their physiology, behaviour and ecology. Despite the possible ecological differences that may exist amongst species, specific roles of the fishes remain unclear as the group is most often studied at higher community levels. This thesis applied stable isotope analysis to differing levels of organisation within a parrotfish community to help elucidate their trophic ecology on coral reefs in Zanzibar. Firstly, blood and muscle tissues were compared to identify differences in their isotope signatures. In other organisms, blood turns over faster than muscle tissue so that muscle tissue represents the diet as integrated over a longer period of time. In most species of parrotfish the blood and muscle δ¹³C signatures were not found to be significantly different, but the δ¹⁵N signatures were significantly different between tissues. This indicated that the δ¹³C signature of both tissues would reveal similar dietary information. Conversely, differences in the δ¹⁵N signature indicated that the nitrogen relationship between tissues was more complicated. Secondly, spatial variability in parrotfish, coral, detritus and macroalgae isotope signatures was assessed at different scales. In macroalgae and coral tissues (zooxanthellae and polyp treated separately), the δ¹³C signatures were shown to differ with depth, presumably because of changes in photosynthetic processes related to depth-associated changes in light. While δ¹⁵N signatures were not affected by depth, all organisms showed enrichment at the Nyange reef, the closest reef to the capital of Zanzibar, Stone Town, presumably reflecting the effects of sewage outfall. These results show that processes that impact the δ¹⁵N signatures of primary producers (macroalgae and zooxanthellae) can be traced to higher trophic levels (coral polyps and fish). Lastly, δ¹³C and δ¹⁵N signatures were used to identify ontogenetic dietary changes in multiple species of parrotfish. Four of the species showed stages that varied from the diets that are normally assumed on the basis of their dentition and feeding technique. This indicates that functional roles based on taxonomy or morphology may fail to include possible ontogenetic dietary changes, and may also fail to elucidate the full impact a species could have on coral reef communities. The conclusions from these studies indicate that the species-specific ecological role of parrotfish in coral reef communities can be complex within and between species, and may differ amongst reefs. In light of the natural and anthropogenic pressures that affect coral reef systems, management decisions based on a more complete understanding of the role of these fish in coral reef communities will help decisions that maintain resilience in these fragile systems.
- Full Text:
- Date Issued: 2012
The treatment of brewery effluent using an integrated high rate algal ponding system
- Authors: Cilliers, Anneke
- Date: 2012
- Subjects: Water -- Purification -- South Africa , Algae -- Biotechnology , Algae culture , Algae -- Economic aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5331 , http://hdl.handle.net/10962/d1005177 , Water -- Purification -- South Africa , Algae -- Biotechnology , Algae culture , Algae -- Economic aspects
- Description: The application of high rate algal ponds (HRAP) in the treatment of brewery effluent that met the South African Department of Water Affairs and Forestry's (DWAF) general limits for discharge into a natural water resource of 1998 were tested during a lO-month baseline phase, followed by an 11-month optimization phase. The objective of the baseline phase was to monitor the seasonal performance of HRAPs. The hydraulic retention time (HRT) fluctuated between 11.16 d and 12.00 d in HRAPs. The chemical oxygen demand (COD) increased from 130.12 ± 6.94 mg/L (post-AD), to 171.21 ± 7.99 mg/L (post-HRAP) . The presence of algal cells and evaporation contributed towards an increase in post-HRAP COD. The ammonia (NH₄-N) concentration decreased from 46.59 ± 2.47 mg/L (post-AD), to 1.08 ± 0.12 mg/L (post-HRAP). The nitrite (NO₂- N) concentration remained below 1.00 mg/L in post-pilot plant AD, post-PFP and post-HRAP effluent. The phosphate (PO₄-P) concentration decreased from 29.81 ± 1.39 mg/L (post-AD) to 17.30 ± 1.16 mg/L PO₄-P. The objective of the optimization phase was to manipulate the HRT to achieve the maximum treatment rate that met the DWAF general limits for discharge into a natural water resource of 1998. Nitrogen (as NH₄-N, NO₃-N, NO₂-N) removal efficiency was used as an indicator of nutrient removal success. HRT was influenced by season. The optimal HRT for autumn was 4.30 d at a temperature of 20.53ºC in HRAP A2 (heated) and 18.96ºC in HRAP B2 (ambient). The optimal HRT for summer was 2.74 d at 29.90ºC in HRAP A2 (heated) and 26.36ºC in HRAP B2 (ambient). The COD decreased from 152.33 ± 4.85 mg/L (post-AD) to 95 .00 ± 3.75 mg/L (post-HRAP A2), and to 100.82 ± 5.93 mg/L (post-HRAP B2). The incoming NH₄-N concentration decreased from 42.53 ± 1.38 mg/ L (post-AD), to 1.70 ± 0.81 mg/ L (post-HRAP) . The nitrate (NO₃-N) concentration post-HRAP was 12 - 14 mg/L. The main methods for NH₄-N removal were probably NH₄-N volatilization through algal uptake. HRAPs were able to lower nitrogen and phosphorous concentrations to within the DWAF limits under normal operating conditions. It is recommended that HRAP treated brewery wastewater be used for irrigation after salt removal, or alternatively, for groundwater recharge . Regulatory exemptions would be required for higher than permitted COD and EC concentrations to enable these actions.
- Full Text:
- Date Issued: 2012
- Authors: Cilliers, Anneke
- Date: 2012
- Subjects: Water -- Purification -- South Africa , Algae -- Biotechnology , Algae culture , Algae -- Economic aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5331 , http://hdl.handle.net/10962/d1005177 , Water -- Purification -- South Africa , Algae -- Biotechnology , Algae culture , Algae -- Economic aspects
- Description: The application of high rate algal ponds (HRAP) in the treatment of brewery effluent that met the South African Department of Water Affairs and Forestry's (DWAF) general limits for discharge into a natural water resource of 1998 were tested during a lO-month baseline phase, followed by an 11-month optimization phase. The objective of the baseline phase was to monitor the seasonal performance of HRAPs. The hydraulic retention time (HRT) fluctuated between 11.16 d and 12.00 d in HRAPs. The chemical oxygen demand (COD) increased from 130.12 ± 6.94 mg/L (post-AD), to 171.21 ± 7.99 mg/L (post-HRAP) . The presence of algal cells and evaporation contributed towards an increase in post-HRAP COD. The ammonia (NH₄-N) concentration decreased from 46.59 ± 2.47 mg/L (post-AD), to 1.08 ± 0.12 mg/L (post-HRAP). The nitrite (NO₂- N) concentration remained below 1.00 mg/L in post-pilot plant AD, post-PFP and post-HRAP effluent. The phosphate (PO₄-P) concentration decreased from 29.81 ± 1.39 mg/L (post-AD) to 17.30 ± 1.16 mg/L PO₄-P. The objective of the optimization phase was to manipulate the HRT to achieve the maximum treatment rate that met the DWAF general limits for discharge into a natural water resource of 1998. Nitrogen (as NH₄-N, NO₃-N, NO₂-N) removal efficiency was used as an indicator of nutrient removal success. HRT was influenced by season. The optimal HRT for autumn was 4.30 d at a temperature of 20.53ºC in HRAP A2 (heated) and 18.96ºC in HRAP B2 (ambient). The optimal HRT for summer was 2.74 d at 29.90ºC in HRAP A2 (heated) and 26.36ºC in HRAP B2 (ambient). The COD decreased from 152.33 ± 4.85 mg/L (post-AD) to 95 .00 ± 3.75 mg/L (post-HRAP A2), and to 100.82 ± 5.93 mg/L (post-HRAP B2). The incoming NH₄-N concentration decreased from 42.53 ± 1.38 mg/ L (post-AD), to 1.70 ± 0.81 mg/ L (post-HRAP) . The nitrate (NO₃-N) concentration post-HRAP was 12 - 14 mg/L. The main methods for NH₄-N removal were probably NH₄-N volatilization through algal uptake. HRAPs were able to lower nitrogen and phosphorous concentrations to within the DWAF limits under normal operating conditions. It is recommended that HRAP treated brewery wastewater be used for irrigation after salt removal, or alternatively, for groundwater recharge . Regulatory exemptions would be required for higher than permitted COD and EC concentrations to enable these actions.
- Full Text:
- Date Issued: 2012
The synthesis of α-alkoxy and α-aminostannanes as precursors to Novel Chromium Fischer Carbenes
- Authors: Meyer, Annalene
- Date: 2012
- Subjects: Alkoxides , Organometallic compounds , Carbenes (Methylene compounds) , Chromium , Molybdenum , Tungsten , Organolithium compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4371 , http://hdl.handle.net/10962/d1005036 , Alkoxides , Organometallic compounds , Carbenes (Methylene compounds) , Chromium , Molybdenum , Tungsten , Organolithium compounds
- Description: The present study involves the use of main group organometallics: organostannanes and organolithiums as precursors to chromium Fischer carbene complexes. Fischer carbenes are well stabilized by the π‐donor substituents such as alkoxy and amino groups and low oxidation state metals such as Group 6 (Chromium, Molybdenum or Tungsten). Carbenes are an important intermediate in the synthesis of a range of compounds through cyclopropanations, insertions, coupling and photochemical reactions. Synthesis and successful characterisation of three α‐alkoxystannanes was achieved via nucleophilic addition of tributylstannyllithium to the respective aldehydes, followed by an immediate MOM protection of the resulting alcohol. Six α‐aminostanannes were synthesised, consisting of N‐BOC, N‐acetyl and N‐ethyl derivatives of pyrrolidine and piperidine, via α‐lithiation and subsequent tinlithium transmetallation in the presence of TMEDA. The ¹³C NMR analysis highlighted an interesting phenomenon of tin‐carbon coupling that revealed unique structural information of both types of stannanes. DFT analysis was completed on the series of stannanes; a predicted frequency analysis was obtained which complemented the experimental Infra‐red data in elucidation of the compounds. The α‐alkoxy and α‐aminostannanes provided stable precursors to the organolithiums required for the synthesis of the novel Fischer chromium carbenes. The organolithiums were obtained via tinlithium exchange at low temperatures, followed by the addition of chromium hexacarbonyl to form the acylpentacarbonyl‐chromate salt. Alkylation of this intermediate using a Meerwein salt, Me₃OBF₄, gave rise to the novel Fischer chromium carbene complexes. Fischer chromium carbenes derived from the two isomeric butyl and isobutyl stannanes and the two N‐ethyl α‐aminostannanes were successfully synthesised. The difficulty encountered in the purification of the Fischer carbene complexes hindered the full characterisation, due to the presence of a by‐product, tetrabutyltin.
- Full Text:
- Date Issued: 2012
- Authors: Meyer, Annalene
- Date: 2012
- Subjects: Alkoxides , Organometallic compounds , Carbenes (Methylene compounds) , Chromium , Molybdenum , Tungsten , Organolithium compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4371 , http://hdl.handle.net/10962/d1005036 , Alkoxides , Organometallic compounds , Carbenes (Methylene compounds) , Chromium , Molybdenum , Tungsten , Organolithium compounds
- Description: The present study involves the use of main group organometallics: organostannanes and organolithiums as precursors to chromium Fischer carbene complexes. Fischer carbenes are well stabilized by the π‐donor substituents such as alkoxy and amino groups and low oxidation state metals such as Group 6 (Chromium, Molybdenum or Tungsten). Carbenes are an important intermediate in the synthesis of a range of compounds through cyclopropanations, insertions, coupling and photochemical reactions. Synthesis and successful characterisation of three α‐alkoxystannanes was achieved via nucleophilic addition of tributylstannyllithium to the respective aldehydes, followed by an immediate MOM protection of the resulting alcohol. Six α‐aminostanannes were synthesised, consisting of N‐BOC, N‐acetyl and N‐ethyl derivatives of pyrrolidine and piperidine, via α‐lithiation and subsequent tinlithium transmetallation in the presence of TMEDA. The ¹³C NMR analysis highlighted an interesting phenomenon of tin‐carbon coupling that revealed unique structural information of both types of stannanes. DFT analysis was completed on the series of stannanes; a predicted frequency analysis was obtained which complemented the experimental Infra‐red data in elucidation of the compounds. The α‐alkoxy and α‐aminostannanes provided stable precursors to the organolithiums required for the synthesis of the novel Fischer chromium carbenes. The organolithiums were obtained via tinlithium exchange at low temperatures, followed by the addition of chromium hexacarbonyl to form the acylpentacarbonyl‐chromate salt. Alkylation of this intermediate using a Meerwein salt, Me₃OBF₄, gave rise to the novel Fischer chromium carbene complexes. Fischer chromium carbenes derived from the two isomeric butyl and isobutyl stannanes and the two N‐ethyl α‐aminostannanes were successfully synthesised. The difficulty encountered in the purification of the Fischer carbene complexes hindered the full characterisation, due to the presence of a by‐product, tetrabutyltin.
- Full Text:
- Date Issued: 2012
The synthesis of fructooligosaccharides by the fructofuranosidase FopAp from Aspergillus niger
- Pindura, Mitchell Kingsley Chido
- Authors: Pindura, Mitchell Kingsley Chido
- Date: 2012
- Subjects: Aspergillus niger , Oligosaccharides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4158 , http://hdl.handle.net/10962/d1018267
- Description: Fructooligosaccharides (FOS) are short-chain fructans with a terminal glucose moiety and are found naturally in many plant species. Besides their wide use as an alternative sweetener in food and beverage industry, FOS have shown great potential as neutraceuticals against diabetes, colon cancer and bowel disease. The uses of FOS are dependent on the degree of polymerisation that they exhibit. β-fructofuranosidase (FFase) and fructosyltransferase (FTase) enzymes are capable of synthesing FOS from carbohydrate raw materials such as chicory and sugar beet. The aim of this study was to investigate the synthesis of FOS of a pre-defined chain length, from sucrose, by the enzyme FopAp; a β-fructofuranosidase from Aspergillus niger. ATCC 20611. The crude enzyme FopAp was successfully purified, with a yield of 78.20 %, by ammonium sulphate precipitation and anion exchange chromatography. Two protein fractions, named FA and FB were shown to exhibit FFase activity. SDS PAGE analysis revealed two proteins with molecular weights of 112 kDa and 78 kDa, which were identified as a FFase and a hydrolase. Temperature and pH optima of 20 ºC and 9, respectively, were observed for the transfructosylation activity in the FFase. The purified FFase exhibited a half life of 1.5 hrs under optimal conditions. Substrate kinetic studies indicated a high hydrolytic activity at low sucrose concentrations, with Vmax and Km of 1.25 μmol/ml/min and 3.28 mM, respectively. Analysis by response surface methodology identified temperature and pH to be significant factors for the production of kestose and nystose, at a 95 % level of confidence. These findings were confirmed by neural networks constructed to identify optimal conditions of FOS synthesis.FOS synthesis was found to be optimal between pH 6 and pH 9 at 25 ºC. The factor of reaction time was found to be insignificant within the selected experimental constraints, for both FOS species. The findings of this investigation are very important as the foundations of a commercially viable synthetic process for the production of FOS.
- Full Text:
- Date Issued: 2012
- Authors: Pindura, Mitchell Kingsley Chido
- Date: 2012
- Subjects: Aspergillus niger , Oligosaccharides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4158 , http://hdl.handle.net/10962/d1018267
- Description: Fructooligosaccharides (FOS) are short-chain fructans with a terminal glucose moiety and are found naturally in many plant species. Besides their wide use as an alternative sweetener in food and beverage industry, FOS have shown great potential as neutraceuticals against diabetes, colon cancer and bowel disease. The uses of FOS are dependent on the degree of polymerisation that they exhibit. β-fructofuranosidase (FFase) and fructosyltransferase (FTase) enzymes are capable of synthesing FOS from carbohydrate raw materials such as chicory and sugar beet. The aim of this study was to investigate the synthesis of FOS of a pre-defined chain length, from sucrose, by the enzyme FopAp; a β-fructofuranosidase from Aspergillus niger. ATCC 20611. The crude enzyme FopAp was successfully purified, with a yield of 78.20 %, by ammonium sulphate precipitation and anion exchange chromatography. Two protein fractions, named FA and FB were shown to exhibit FFase activity. SDS PAGE analysis revealed two proteins with molecular weights of 112 kDa and 78 kDa, which were identified as a FFase and a hydrolase. Temperature and pH optima of 20 ºC and 9, respectively, were observed for the transfructosylation activity in the FFase. The purified FFase exhibited a half life of 1.5 hrs under optimal conditions. Substrate kinetic studies indicated a high hydrolytic activity at low sucrose concentrations, with Vmax and Km of 1.25 μmol/ml/min and 3.28 mM, respectively. Analysis by response surface methodology identified temperature and pH to be significant factors for the production of kestose and nystose, at a 95 % level of confidence. These findings were confirmed by neural networks constructed to identify optimal conditions of FOS synthesis.FOS synthesis was found to be optimal between pH 6 and pH 9 at 25 ºC. The factor of reaction time was found to be insignificant within the selected experimental constraints, for both FOS species. The findings of this investigation are very important as the foundations of a commercially viable synthetic process for the production of FOS.
- Full Text:
- Date Issued: 2012
The synthesis and breast cancer inhibitory activity of cinnamic acid analogues based on the halogenated monoterpene pharmacophore
- Authors: Chiwakata, Maynard Tendai
- Date: 2012
- Subjects: Halocarbons , Cancer -- Treatment , Breast -- Cancer -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3866 , http://hdl.handle.net/10962/d1016129
- Description: Breast cancer is one of the leading causes of death, with mortality rate estimates of 465 000 deaths per annum. It is estimated that 1.3 million women are diagnosed with the disease each year especially in the developing countries. Current chemotherapy relies on the use of high doses of non-specific toxic agents that possess adverse side effects and compromise patient’s compliance and adherence to treatment. Paclitaxel, one of the common drugs used in breast cancer chemotherapy results in sensory and motor neuropathy, whilst hormonal therapy e.g. Herceptin causes severe cardiovascular, gastrointestinal and cutaneous side effects. There has been a demand in developing newer cancer agents that demonstrate selective cytoxicity with minimal effect on normal body tissue. Numerous studies have shown that marine organisms produce a wide range of halogenated compounds that possess cytotoxic properties, and hence can be a source of new drug hits or leads for cancer therapy. Halomon, a polyhalogenated monoterpene from Portieria hornemannii, displayed interesting activity against brain, renal and lung cancer tumours with selective/differential cytotoxicity. This inspired us to focus our project on halogenated monoterpenes isolated from the same Rhodophyta class as P. hornemannii but with particular attention to Plocamium species. Several metabolites have been isolated from P. cornutum, P. corallorhiza and P. suhrii that possess interesting cytotoxicities against a breast cancer cell line (MCF7) and an oesophageal cancer line (WHCO1). The aim of the project was therefore centred at isolating target compounds for preliminary structure-activity studies against a breast cancer cell line, and use this information to synthesize a series of analogues that are more stable than the natural products and yet as active using a fragment-based type approach to map out pharmacophoric elements. Five metabolites were isolated from P. cornutum and five from P. corallorhiza. Cell-based assays were conducted using an MTT assay kit against MCF7 and MDA-MB-231 breast cancer cell lines and (1E,3E,5S,6R)-1,5,6-trichloro-2-(dichloromethyl)-6-methylocta-1,3,7-triene, isolated from P. cornutum was the most active with IC50 values of 3.0 μM and 6.15 μM respectively. Introduction of a terminal aromatic ring to enhance stability, together with varying substituents (H, CH3, CF3, Br, CN, CHO, CHCl2) on position 7 of the molecule, gave rise to a series of cinnamate ester derivatives inspired by (1E,3E,5S,6R)-1,5,6-trichloro-2-(dichloromethyl)-6-methylocta-1,3,7-triene. The analogues were synthesized from their benzaldehyde precursors via Aldol condensation, esterification and Wittig reactions. Their carboxylic acid counterparts were synthesized by hydrolysis of the parent esters in an attempt to promote water solubilities of the analogues. Biological activity assays were then conducted with the cinnamate analogues against the MDA-MB-231 breast cancer cell line using an MTT assay kit. Ester derivatives with -CHO and -CHCl2 functionalities had IC50 values of 43.45 μM and 100.01 μM respectively whilst the other ester derivatives were inactive. It was concluded that either an aldehyde (-CHO) or gem-dichlorides (-CHCl2) is specifically required for cytotoxic activity to be observed. None of the carboxylic acids were active which could have been due to failure of the compounds to enter the breast cancer cells and reach the target site because of their polar nature. Compounds with -CHO and -CHCl2 functionalities were therefore selected for future SARs studies.
- Full Text:
- Date Issued: 2012
- Authors: Chiwakata, Maynard Tendai
- Date: 2012
- Subjects: Halocarbons , Cancer -- Treatment , Breast -- Cancer -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3866 , http://hdl.handle.net/10962/d1016129
- Description: Breast cancer is one of the leading causes of death, with mortality rate estimates of 465 000 deaths per annum. It is estimated that 1.3 million women are diagnosed with the disease each year especially in the developing countries. Current chemotherapy relies on the use of high doses of non-specific toxic agents that possess adverse side effects and compromise patient’s compliance and adherence to treatment. Paclitaxel, one of the common drugs used in breast cancer chemotherapy results in sensory and motor neuropathy, whilst hormonal therapy e.g. Herceptin causes severe cardiovascular, gastrointestinal and cutaneous side effects. There has been a demand in developing newer cancer agents that demonstrate selective cytoxicity with minimal effect on normal body tissue. Numerous studies have shown that marine organisms produce a wide range of halogenated compounds that possess cytotoxic properties, and hence can be a source of new drug hits or leads for cancer therapy. Halomon, a polyhalogenated monoterpene from Portieria hornemannii, displayed interesting activity against brain, renal and lung cancer tumours with selective/differential cytotoxicity. This inspired us to focus our project on halogenated monoterpenes isolated from the same Rhodophyta class as P. hornemannii but with particular attention to Plocamium species. Several metabolites have been isolated from P. cornutum, P. corallorhiza and P. suhrii that possess interesting cytotoxicities against a breast cancer cell line (MCF7) and an oesophageal cancer line (WHCO1). The aim of the project was therefore centred at isolating target compounds for preliminary structure-activity studies against a breast cancer cell line, and use this information to synthesize a series of analogues that are more stable than the natural products and yet as active using a fragment-based type approach to map out pharmacophoric elements. Five metabolites were isolated from P. cornutum and five from P. corallorhiza. Cell-based assays were conducted using an MTT assay kit against MCF7 and MDA-MB-231 breast cancer cell lines and (1E,3E,5S,6R)-1,5,6-trichloro-2-(dichloromethyl)-6-methylocta-1,3,7-triene, isolated from P. cornutum was the most active with IC50 values of 3.0 μM and 6.15 μM respectively. Introduction of a terminal aromatic ring to enhance stability, together with varying substituents (H, CH3, CF3, Br, CN, CHO, CHCl2) on position 7 of the molecule, gave rise to a series of cinnamate ester derivatives inspired by (1E,3E,5S,6R)-1,5,6-trichloro-2-(dichloromethyl)-6-methylocta-1,3,7-triene. The analogues were synthesized from their benzaldehyde precursors via Aldol condensation, esterification and Wittig reactions. Their carboxylic acid counterparts were synthesized by hydrolysis of the parent esters in an attempt to promote water solubilities of the analogues. Biological activity assays were then conducted with the cinnamate analogues against the MDA-MB-231 breast cancer cell line using an MTT assay kit. Ester derivatives with -CHO and -CHCl2 functionalities had IC50 values of 43.45 μM and 100.01 μM respectively whilst the other ester derivatives were inactive. It was concluded that either an aldehyde (-CHO) or gem-dichlorides (-CHCl2) is specifically required for cytotoxic activity to be observed. None of the carboxylic acids were active which could have been due to failure of the compounds to enter the breast cancer cells and reach the target site because of their polar nature. Compounds with -CHO and -CHCl2 functionalities were therefore selected for future SARs studies.
- Full Text:
- Date Issued: 2012
The symmetry group of a model of hyperbolic plane geometry and some associated invariant optimal control problems
- Authors: Henninger, Helen Clare
- Date: 2012
- Subjects: Geometry , Symmetry groups , Symmetry (Mathematics)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5432 , http://hdl.handle.net/10962/d1018232
- Description: In this thesis we study left-invariant control offine systems on the symmetry group of a. model of hyperbolic plane geometry, the matrix Lie group SO(1, 2)₀. We determine that there are 10 distinct classes of such control systems and for typical elements of two of these classes we provide solutions of the left-invariant optimal wntrol problem with quauratic costs. Under the identification of the Lie allgebra .so(l, 2) with Minkowski spacetime R¹̕'², we construct a controllabilility criterion for all left-invariant control affine systems on 50(1. 2)₀ which in the inhomogeneous case depends only on the presence or absence of an element in the image of the system's trace in R¹̕ ²which is identifiable using the inner product. For the solutions of both the optimal control problems, we provide explicit expressions in terms of Jacobi elliptic functions for the solutions of the reduced extremal equations and determine the nonlinear stability of the equilibrium points.
- Full Text:
- Date Issued: 2012
- Authors: Henninger, Helen Clare
- Date: 2012
- Subjects: Geometry , Symmetry groups , Symmetry (Mathematics)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5432 , http://hdl.handle.net/10962/d1018232
- Description: In this thesis we study left-invariant control offine systems on the symmetry group of a. model of hyperbolic plane geometry, the matrix Lie group SO(1, 2)₀. We determine that there are 10 distinct classes of such control systems and for typical elements of two of these classes we provide solutions of the left-invariant optimal wntrol problem with quauratic costs. Under the identification of the Lie allgebra .so(l, 2) with Minkowski spacetime R¹̕'², we construct a controllabilility criterion for all left-invariant control affine systems on 50(1. 2)₀ which in the inhomogeneous case depends only on the presence or absence of an element in the image of the system's trace in R¹̕ ²which is identifiable using the inner product. For the solutions of both the optimal control problems, we provide explicit expressions in terms of Jacobi elliptic functions for the solutions of the reduced extremal equations and determine the nonlinear stability of the equilibrium points.
- Full Text:
- Date Issued: 2012
The role of Hsp90/Hsp70 organising protein (Hop) in the Proliferation, Survival and Migration of Breast Cancer Cells.
- Authors: Willmer, Tarryn
- Date: 2012
- Subjects: Cancer -- Treatment , Heat shock proteins , Cancer cells , Breast -- Cancer
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4130 , http://hdl.handle.net/10962/d1015720
- Description: Hop (the Hsp90/Hsp70 organising protein) is a co-chaperone that acts as an adapter between the major molecular chaperones Hsp90 and Hsp70 during the cellular assembly of the Hsp90 complex. The Hsp90 complex regulates the stability and conformational maturation of a range of important cellular proteins, many of which are deregulated in cancer. In this study, we hypothesised that Hop knockdown inhibits proliferation and migration of cancer cells. We characterised the expression of Hop in cell models of different cancerous status, and provided evidence that Hop was upregulated in tumour cells compared to normal cell counterparts. Using an RNA interference approach, a 60-90% knockdown of Hop was achieved for up to 144 hours in the MDA-MB-231 and Hs578T breast cancer cell lines. Hop knockdown resulted in downregulation of the Hsp90 client proteins, Akt and Stat3, as well as a change in the expression of other Hsp90 co-chaperones, p23, Cdc37 and Aha1, while no change in the levels of Hsp90 or Hsp70 was observed. Silencing of Hop impaired cell proliferation in Hs578T cells but an increase in proliferation in MDA-MB-231, suggesting that the role of Hop in cancer cell proliferation was dependent on type of cancer cell. Hop knockdown in Hs578T and MDA-MB- 231 cells did not lead to any significant changes in the half maximal inhibitory concentrations (IC50) of selected small molecule inhibitors (paclitaxel, geldanamycin and novobiocin) in these cell lines after 72 hours. Hop knockdown cells were however, more sensitive than control cells to the Hsp90 inhibitors geldanamycin and novobiocin at earlier time points and in the presence of the drug transporter inhibitor, verapamil. Hop knockdown caused a decrease in cell migration as measured by the wound healing assay in both Hs578T and MDA-MB-231 cells. Hop was present in purified pseudopodia fractions of migrating cells, and immunofluorescence analysis showed that Hop colocalised with actin at the leading edges of pseudopodia, points of adhesion and at intercellular junctions of cells that have been stimulated to migrate with the chemokine stromal derived factor-1. Hop was able to bind to actin in vitro using actin cosedimentation assays, and silencing of Hop dramatically reduced the capacity of Hs578T cells to form pseudopodia. These results establish a correlation between Hop and actin dynamics, pseudopodia formation and migration in the context of Hop silencing, and collectively suggest that Hop plays a role in cancer cell migration. This study presents experimental evidence for a promising alternative to targeting Hsp90 and Hsp70 chaperones, a novel drug target in cancer therapy.
- Full Text:
- Date Issued: 2012
- Authors: Willmer, Tarryn
- Date: 2012
- Subjects: Cancer -- Treatment , Heat shock proteins , Cancer cells , Breast -- Cancer
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4130 , http://hdl.handle.net/10962/d1015720
- Description: Hop (the Hsp90/Hsp70 organising protein) is a co-chaperone that acts as an adapter between the major molecular chaperones Hsp90 and Hsp70 during the cellular assembly of the Hsp90 complex. The Hsp90 complex regulates the stability and conformational maturation of a range of important cellular proteins, many of which are deregulated in cancer. In this study, we hypothesised that Hop knockdown inhibits proliferation and migration of cancer cells. We characterised the expression of Hop in cell models of different cancerous status, and provided evidence that Hop was upregulated in tumour cells compared to normal cell counterparts. Using an RNA interference approach, a 60-90% knockdown of Hop was achieved for up to 144 hours in the MDA-MB-231 and Hs578T breast cancer cell lines. Hop knockdown resulted in downregulation of the Hsp90 client proteins, Akt and Stat3, as well as a change in the expression of other Hsp90 co-chaperones, p23, Cdc37 and Aha1, while no change in the levels of Hsp90 or Hsp70 was observed. Silencing of Hop impaired cell proliferation in Hs578T cells but an increase in proliferation in MDA-MB-231, suggesting that the role of Hop in cancer cell proliferation was dependent on type of cancer cell. Hop knockdown in Hs578T and MDA-MB- 231 cells did not lead to any significant changes in the half maximal inhibitory concentrations (IC50) of selected small molecule inhibitors (paclitaxel, geldanamycin and novobiocin) in these cell lines after 72 hours. Hop knockdown cells were however, more sensitive than control cells to the Hsp90 inhibitors geldanamycin and novobiocin at earlier time points and in the presence of the drug transporter inhibitor, verapamil. Hop knockdown caused a decrease in cell migration as measured by the wound healing assay in both Hs578T and MDA-MB-231 cells. Hop was present in purified pseudopodia fractions of migrating cells, and immunofluorescence analysis showed that Hop colocalised with actin at the leading edges of pseudopodia, points of adhesion and at intercellular junctions of cells that have been stimulated to migrate with the chemokine stromal derived factor-1. Hop was able to bind to actin in vitro using actin cosedimentation assays, and silencing of Hop dramatically reduced the capacity of Hs578T cells to form pseudopodia. These results establish a correlation between Hop and actin dynamics, pseudopodia formation and migration in the context of Hop silencing, and collectively suggest that Hop plays a role in cancer cell migration. This study presents experimental evidence for a promising alternative to targeting Hsp90 and Hsp70 chaperones, a novel drug target in cancer therapy.
- Full Text:
- Date Issued: 2012
The performance of O R Tambo district municipality regarding water service delivery
- Authors: Xala, Zandile
- Date: 2012
- Subjects: Public administration|zSouth Africa , Local government , Government accountability
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:16141 , http://hdl.handle.net/10948/d1009318 , Public administration|zSouth Africa , Local government , Government accountability
- Description: Access to water services in South Africa still remains a dream for most people, especially those who live in remote areas. The poverty stricken communities of the former Transkei in the Eastern Cape are in need of water and sanitation services. The findings of the study reveal that most community members are dissatisfied with the water service delivery. During an interview with ward 6 residents who reside in an urban area of the OR Tambo District Municipality (ORTDM), they revealed that pipe bursting is one of the main causes why from time to time they do not have water. The other factor is when there is no electricity; the water system depends on the availability of electricity. The South African local government has been mandated to consult with its citizenry in respect of the processes relating to water service delivery. South Africa has developed a wide range of legislation that ensures community consultation on a continuous basis with regard to how water services should be delivered. It is the community‟s right to be consulted and to give input on issues that directly affect them. The researcher used a qualitative research method since it would provide the reader with more insight into how water services are delivered in the ORTDM. Both community members and municipal officials were interviewed. A number of findings have been made during the research. Some community members are of the view that constant community consultation could reduce service delivery protests. Political intervention needs to be made by the leadership with regard to service delivery and more resources need to be committed toward those processes. This study was conducted from April 2012 to November 2012 and was aimed at assessing the performance of OR Tambo District Municipality regarding water service delivery. According to OR Tambo DM (2011/12: 3), the communities through the consultation processes conducted throughout five (5) local municipalities made it clear that ensuring increased access to water and sanitation services is still the main priority.
- Full Text:
- Date Issued: 2012
- Authors: Xala, Zandile
- Date: 2012
- Subjects: Public administration|zSouth Africa , Local government , Government accountability
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:16141 , http://hdl.handle.net/10948/d1009318 , Public administration|zSouth Africa , Local government , Government accountability
- Description: Access to water services in South Africa still remains a dream for most people, especially those who live in remote areas. The poverty stricken communities of the former Transkei in the Eastern Cape are in need of water and sanitation services. The findings of the study reveal that most community members are dissatisfied with the water service delivery. During an interview with ward 6 residents who reside in an urban area of the OR Tambo District Municipality (ORTDM), they revealed that pipe bursting is one of the main causes why from time to time they do not have water. The other factor is when there is no electricity; the water system depends on the availability of electricity. The South African local government has been mandated to consult with its citizenry in respect of the processes relating to water service delivery. South Africa has developed a wide range of legislation that ensures community consultation on a continuous basis with regard to how water services should be delivered. It is the community‟s right to be consulted and to give input on issues that directly affect them. The researcher used a qualitative research method since it would provide the reader with more insight into how water services are delivered in the ORTDM. Both community members and municipal officials were interviewed. A number of findings have been made during the research. Some community members are of the view that constant community consultation could reduce service delivery protests. Political intervention needs to be made by the leadership with regard to service delivery and more resources need to be committed toward those processes. This study was conducted from April 2012 to November 2012 and was aimed at assessing the performance of OR Tambo District Municipality regarding water service delivery. According to OR Tambo DM (2011/12: 3), the communities through the consultation processes conducted throughout five (5) local municipalities made it clear that ensuring increased access to water and sanitation services is still the main priority.
- Full Text:
- Date Issued: 2012
The molecular analysis of the interation surface between sCD23 and the B2-integrins, CD11b & CD11c
- Authors: Pereira, Melanie Claire
- Date: 2012
- Subjects: CD23 antigen , Immune response -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10337 , http://hdl.handle.net/10948/d1014734
- Description: Both CD23 and the β2 integrins (also known as CD11/CD18) have very important immunological functions, especially during the allergic response where the binding of CD23 to β2 integrins contributes to various types of signalling in monocytes which can result in drastic sensitivities experienced by some allergic individuals. CD23, also known as the low affinity receptor for immunoglobulin E or (FcεRII), is a type II transmembrane glycoprotein which is synthesized by haematopoietic cells and has biological activity in both membrane-bound and freely soluble forms. It acts via a number of receptors, including the β2 integrins. β2 integrins are specifically found on leukocytes and they play important roles in cell–cell or cell–matrix adhesion via their ability to bind multiple ligands. These molecules occur as heterodimers consisting of an alpha (α) and beta (β) subunit. The α-subunits of β2 integrins contain an approximately 200-amino-acid inserted domain or I-domain which is implicated in ligand binding function. There are four different types of β2 integrins, namely CD11a, CD11b, CD11c and CD11d, all dimers with the common beta subunit, CD18. CD23 and CD11/18 are natural ligands of each other; however the interaction site for CD23 is unknown. It is postulated that the integrin recognizes a tripeptide motif in a small disulfide-bonded loop at the N-terminus of the lectin head region of CD23, which is focussed around Arg172, Lys173 and Cys174 (RKC). This study thus focused on the interaction between the I-domain of CD11 (b and c) and a recombinant 25kDa construct of sCD23. In order to understand the characteristics of ligand binding between the relevant proteins of interest, alanine substitutions on the RKC motif of CD23 were made via site-directed mutagenesis. Consequently, a recombinant form of the I-domain of CD11 (b and c) as well as a wild type (containing the RKC motif) and mutant form (containing an AAC motif) of sCD23 were expressed and purified. The CD11 recombinant proteins were purified via affinity chromatography and the CD23 recombinant proteins via gel filtration chromatography. In addition, synthetic (CD23 derived) peptides, one containing the RKC sequence and the other the AAC sequence, were designed and custom synthesized. The synthetic peptides as well as the recombinant CD23 proteins were then analyzed for their interaction with the CD11 I-domain via ELISA. Subsequent ELISA analyses showed that the native sCD23 and the RKC peptide were able to bind to the integrin α I-domain whereas the mutant sCD23 and the corresponding synthetic AAC peptide failed to bind. This interaction was also analysed via flow cytometry using differentiated U937 cells, yielding similar results. ELISA analyses for the sCD23-CD11b I-domain interaction showed a Kd of 0.36 ± 0.14 μM whereas the RKC-CD11b I-domain interaction yielded a Kd of 1.75 ± 0.58 μM. Similarly, the sCD23-CD11c I-domain interaction yielded a Kd of 0.39 ± 0.09 μM and 1.53 ± 0.72 μM for the RKC-CD11c I-domain interaction. Peptide inhibitory analysis, analysed via ELISA and flow cytometry, reinforced the fact that the RKC motif on sCD23 is a prerequisite for ligand binding of the CD11b/c I-domain.
- Full Text:
- Date Issued: 2012
- Authors: Pereira, Melanie Claire
- Date: 2012
- Subjects: CD23 antigen , Immune response -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10337 , http://hdl.handle.net/10948/d1014734
- Description: Both CD23 and the β2 integrins (also known as CD11/CD18) have very important immunological functions, especially during the allergic response where the binding of CD23 to β2 integrins contributes to various types of signalling in monocytes which can result in drastic sensitivities experienced by some allergic individuals. CD23, also known as the low affinity receptor for immunoglobulin E or (FcεRII), is a type II transmembrane glycoprotein which is synthesized by haematopoietic cells and has biological activity in both membrane-bound and freely soluble forms. It acts via a number of receptors, including the β2 integrins. β2 integrins are specifically found on leukocytes and they play important roles in cell–cell or cell–matrix adhesion via their ability to bind multiple ligands. These molecules occur as heterodimers consisting of an alpha (α) and beta (β) subunit. The α-subunits of β2 integrins contain an approximately 200-amino-acid inserted domain or I-domain which is implicated in ligand binding function. There are four different types of β2 integrins, namely CD11a, CD11b, CD11c and CD11d, all dimers with the common beta subunit, CD18. CD23 and CD11/18 are natural ligands of each other; however the interaction site for CD23 is unknown. It is postulated that the integrin recognizes a tripeptide motif in a small disulfide-bonded loop at the N-terminus of the lectin head region of CD23, which is focussed around Arg172, Lys173 and Cys174 (RKC). This study thus focused on the interaction between the I-domain of CD11 (b and c) and a recombinant 25kDa construct of sCD23. In order to understand the characteristics of ligand binding between the relevant proteins of interest, alanine substitutions on the RKC motif of CD23 were made via site-directed mutagenesis. Consequently, a recombinant form of the I-domain of CD11 (b and c) as well as a wild type (containing the RKC motif) and mutant form (containing an AAC motif) of sCD23 were expressed and purified. The CD11 recombinant proteins were purified via affinity chromatography and the CD23 recombinant proteins via gel filtration chromatography. In addition, synthetic (CD23 derived) peptides, one containing the RKC sequence and the other the AAC sequence, were designed and custom synthesized. The synthetic peptides as well as the recombinant CD23 proteins were then analyzed for their interaction with the CD11 I-domain via ELISA. Subsequent ELISA analyses showed that the native sCD23 and the RKC peptide were able to bind to the integrin α I-domain whereas the mutant sCD23 and the corresponding synthetic AAC peptide failed to bind. This interaction was also analysed via flow cytometry using differentiated U937 cells, yielding similar results. ELISA analyses for the sCD23-CD11b I-domain interaction showed a Kd of 0.36 ± 0.14 μM whereas the RKC-CD11b I-domain interaction yielded a Kd of 1.75 ± 0.58 μM. Similarly, the sCD23-CD11c I-domain interaction yielded a Kd of 0.39 ± 0.09 μM and 1.53 ± 0.72 μM for the RKC-CD11c I-domain interaction. Peptide inhibitory analysis, analysed via ELISA and flow cytometry, reinforced the fact that the RKC motif on sCD23 is a prerequisite for ligand binding of the CD11b/c I-domain.
- Full Text:
- Date Issued: 2012