An approach to analyzing gold supply from the South African gold mines
- Authors: Mather, Diarmid John
- Date: 1995
- Subjects: Gold mines and mining -- Economic aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:1015 , http://hdl.handle.net/10962/d1002750 , Gold mines and mining -- Economic aspects -- South Africa
- Description: The gold mining fIrm in South Africa is viewed as a normal fIrm producing gold bearing ore but faced with a quality constraint (grade). Grade, however, is never uniformly distributed in a metalliferous deposit and because high grades are mined fIrst, the quality constraint becomes increasingly severe with cumulated production. The fIrm will continue to mine gold bearing ore until it reaches its mining limit where the marginal cost of recovering the gold is equal to the marginal revenue received from that gold and at that point the economic deposit becomes exhausted. Because the mining limit is determined by cost/technology and price, it is not fIxed and thus the point of economic exhaustion may change. When high grades are mined fIrst the relationship between the tonnage of gold ore and the grade describes the rate at which the grade is expected to fall with cumulated production. In this thesis, the grade for South African Witwatersrand gold producers is modelled to fall exponentially. The mining limit, determined by costs/technology and price, can be expressed in terms of grade. By predicting the decay in grade relative to the tonnage of gold ore and applying a mining limit, a life-time size of the economic deposit can be estimated. The remaining life of a producing gold mine can then be determined and the flow of gold predicted. An empirical treatment using the disk model of a gold deposit is undertaken for a gold mine, a goldfIeld and the total Witwatersrand gold deposit. A dynamic econometric analysis of expected mining costs and gold prices is not attempted; however certain examples are used to illustrate the applicability of the model and the influence of the South African gold mining tax formula on the life of the mine.
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- Date Issued: 1995
An in silico analysis, purification and partial kinetic characterisation of a serine protease from Gelidium pristoides
- Authors: Ntsata, Zolani
- Date: 2020
- Subjects: Gelidium Proteolytic enzymes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12076 , vital:39149
- Description: The aim of this study was to characterize the protease enzyme (s) from red algae. An in silico analysis of red algae genomes was used to identify gene coding for protease. Protease sequences identified from these genomes were examined for conserved domains, active site and structures. The domain search revealed that the identified sequences were from the five classes of protease enzymes. For function inference, the red algae sequences were aligned to identify the catalytic sites, and the tertiary structures were predicted using homology modelling. An in silico analysis provides an indication of the class and potential functions of the enzymes. However, it cannot predict whether the gene is constitutively expressed in the red algae or under which conditions it may be induced, and it cannot determine the kinetic efficiency of an enzyme against various substrate, or the optimum conditions for the protein activity. Attempts to clone and recombinantly express selected red algae proteases, proved unsuccessful, as the available genomes where from red algae species found mainly in Asia, and the designed primers, therefore, did not amplify a corresponding PCR product from the red algae harvested in South Africa. Crude extracts of red algae collected from Kenton-on-Sea, along the East Coast of South Africa, were screened for protease activity using Benzoyl-Arginine-pNitroAnilide (BApNA) as substrate. The proteases detected in the crude extract were purified using ammonium sulphate precipitation and HiPrep DEAE FF 16/10; CM FF 16/10, and HiPrep Q FF 16/10 columns for ion-exchange chromatography. The HiPrep Q FF 16/10 column yielded active protein, which revealed two bands of 11kDa and 17kDa on SDS-PAGE. It was assumed that these bands represented two subunits of the purified protease. Kinetic characterisation of the purified protease revealed a pH optimum of 9, using BApNA as substrate, a temperature optimum at 60ºC, and sensitivity to temperature when stored above 4ºC. The protease activity was inhibited by Ferric chloride (32%), induced by calcium chloride (156%), no inhibition by magnesium chloride (97%) and slight inhibition by potassium chloride (77%) and manganese chloride (70%). Phenylmethylsulfonyl fluoride (PMSF), a serine protease inhibitor, almost totally inhibited the protease activity, indicating that the protease from red algae was most likely a serine protease. The Km and kcat values were 1.96 µM, and 0.364 s -1 , respectively using BApNA as the substrate. This study revealed that the red algae genome contains numerous genes that encode for proteases from almost all the classes of proteases. A serine protease from the red algae Gelidium pristoides was partially purified and kinetically characterised, confirming that red algae found along the Eastern Coast of South Africa contain genes that express active proteases that may be of medical or industrial interest. Further studies, however, are required to recombinantly express, purify and characterise the numerous proteases encoded by the genes identified in the in silico analysis of this study.
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- Date Issued: 2020
Effects of vitamin A on tumour and untransformed cells
- Authors: De Villiers, Diane Lynette
- Date: 1988
- Subjects: Vitamin A , Vitamin A in the body , Cancer -- Prevention
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3881 , http://hdl.handle.net/10962/d1001615
- Description: Vitamin A and its chemical analogues (retinoids) are known to play a role in the maintenance and differentiation of epithelial tissue. Retinoids have been shown to inhibit carcinogenesis in a number of tissues in experimental animals and to inhibit the growth of various untransformed and cancer cell lines in vitro. This study investigated the effect of retinyl acetate supplemented at concentrations of 1 μM, 5 μM, 10 μM and 100 μM to in vitro cultured untransformed LLCMK cells, and transformed BL-6 melanoma and human hepatoma cell lines. A small but non-significant effect of vitamin A addition on the growth of the untransformed cells was observed, while substantial inhibition of proliferation of the two tumour cell lines was found. At the cytotoxic level of 100 μM supplemented vitamin A, all three cell lines showed marked inhibition of growth. This led to an electron microscopy study to examine the ultrastructural effect of the vitamin A addition. At the low non-toxic levels of vitamin A addition (1 - 10 μM), no ultrastructural changes were observed in the untransformed cells. However, at a level of 5 μM and 10 μM vitamin A addition in the tumour cells, an increase in the size of suspected lipid droplets was observed. At the cytotoxic level of 100 μM supplemented vitamin A, large lipid droplets were very apparent, as was much cellular degeneration. This effect was more marked in the tumour cells than in the untransformed cells. The lipid nature of the droplets was confirmed by using the lipid stain, Sudan IV. In order to investigate the effect of added vitamin A at the cell surface level, an ELISA system was used to quantify the level of the cell surface glycoprotein, fibronectin, in the culture media. Vitamin A plays an important role in the production of mature fibronectin by participating in the glycosylation of the molecule. This study showed no major effect of added vitamin A on the release of fibronectin into the culture media. This did not, however, exclude the possibility that the vitamin A was involved in the production and enhanced binding of fibronectin to the cell surface, and was possibly also exerting an effect on the availability of fibronectin receptors. Further studies would, however, be required to substantiate such effects of vitamin A supplementation. No single mechanism of action of vitamin A on tumour cell growth inhibition was identified, but the possibility that at least two mechanisms exist, was suggested
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- Date Issued: 1988
Internal fingerprint extraction
- Authors: Darlow, Luke Nicholas
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2959 , vital:20347
- Description: Fingerprints are a non-invasive biometric that possess significant advantages. However, they are subject to surface erosion and damage; distortion upon scanning; and are vulnerable to fingerprint spoofing. The internal fingerprint exists as the undulations of the papillary junction - an intermediary layer of skin - and provides a solution to these disadvantages. Optical coherence tomography is used to capture the internal fingerprint. A depth profile of the papillary junction throughout the OCT scans is first constructed using fuzzy c-means clustering and a fine-tuning procedure. This information is then used to define localised regions over which to average pixels for the resultant internal fingerprint. When compared to a ground-truth internal fingerprint zone, the internal fingerprint zone detected automatically is within the measured bounds of human error. With a mean- squared-error of 21.3 and structural similarity of 96.4%, the internal fingerprint zone was successfully found and described. The extracted fingerprints exceed their surface counterparts with respect to orientation certainty and NFIQ scores (both of which are respected fingerprint quality assessment criteria). Internal to surface fingerprint correspondence and internal fingerprint cross correspondence were also measured. A larger scanned region is shown to be advantageous as internal fingerprints extracted from these scans have good surface correspondence (75% had at least one true match with a surface counterpart). It is also evidenced that internal fingerprints can constitute a fingerprint database. 96% of the internal fingerprints extracted had at least one corresponding match with another internal fingerprint. When compared to surface fingerprints cropped to match the internal fingerprints’ representative area and locality, the internal fingerprints outperformed these cropped surface counterparts. The internal fingerprint is an attractive biometric solution. This research develops a novel approach to extracting the internal fingerprint and is an asset to the further development of technologies surrounding fingerprint extraction from OCT scans. No earlier work has extracted or tested the internal fingerprint to the degree that this research has.
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- Date Issued: 2016
Screening of shark liver extracts for potential antimicrobial properties against selected pathogenic bacterial strains
- Authors: Mrwetyana, Thandolwethu
- Date: 2017
- Subjects: Fishes -- Diseases Pathogenic bacteria Antibiotics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12982 , vital:39413
- Description: The growing problem of antimicrobial resistance prevents the effective treatment of bacterial infections. Traditional antibiotics such as penicillin have been rendered ineffective against most microbial pathogens. This has led to an increased need for the development of new and improved drugs. The marine environment contains a great array of organisms with unique biological properties, but still remains one of our most underutilized biological resources. The aim of this study was to screen different shark liver extracts for antimicrobial properties. After optimizing the extraction methods, the liver extracts (oil and aminosterol) of three different shark species, namely the Dogfish (Squalus acanthias), the Catshark (Scyliorhinus capensis) and the Hammerhead (Sphyrna zygaena) shark, were screened for antimicrobial properties using the Kirby-Bauer disc diffusion method against selected bacterial pathogens (Helicobacter pylori, Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Bacillus cereus), after which the MIC was determined using the modified broth micro-dilution described by Vollekova et al. (2001). The most active extract was fractionated using thin layer chromatography, and TLC-direct bioautography was used to determine the antimicrobial properties of the fractionated compounds. The Folch et al and the Shinnar et al methods yielded the highest extract volumes for oil and aminosterol consecutively, and the catshark and dogfish aminosterol extract showed greater levels of bioactivity against all selected bacterial pathogens, with S. aureus showing highest susceptibility levels to both extracts. A total of 22 compounds were observed in the developed plates with two compounds (Rf 0.53 and 0.79) showing antimicrobial activity. Certain shark liver extracts possess antimicrobial properties that have the potential to be used in the development of new antimicrobial drugs.
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- Date Issued: 2017
Synthesis of bromochloromethane using phase transfer catalysis
- Authors: Brooks, Lancelot L
- Date: 2011
- Subjects: Chemistry, Analytic , Fire extinguishing agents , Chemical systems , Physical science
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10382 , http://hdl.handle.net/10948/d1008162 , Chemistry, Analytic , Fire extinguishing agents , Chemical systems , Physical science
- Description: The synthesis of bromochloromethane (BCM) in a batch reactor, using phase transfer catalysis, was investigated. During the synthetic procedure, sodium bromide (100.0g, 0.97mol) along with an excess amount of dichloromethane (265.0g, 3.12 mol) was charged to a reactor containing benzyl triethylammonium chloride (13 mmol), dissolved in 50 ml of water. The bench scale reactions were all carried out in a Parr 4520 bench top pressure reactor coupled to a Parr 4841 temperature controller. The method produced a 50.0 percent yield of the product BCM after a reaction time of 12 to 13 hours. The main objective for this investigation was to optimize the abovementioned reaction with respect to yield and reactor throughput. Quantitative analysis of BCM was performed on a Focus Gas Chromatograph, fitted with a flame ionization detector, and a BP20 column (30m × 0,32mm ID × 0,25 mm). Delta software, version 5.0, was applied for data collection and processing. The injector and detector port were set at 250°C and 280°C, respectively. The oven temperature was set and held at 40°C for a period of 2 minutes, then gradually increased at a rate of 10°C/min to 130°C, with the final hold time set for 1 minute. An analytical method for the quantitative analysis of BCM was developed, optimized and validated. Validation of the analytical method commenced over a period of three days, and focussed the following validation parameters: Accuracy, precision, and ruggedness. Statistical evaluation of the results obtained for precision showed that the error between individual injections is less than 2 percent for each component. However, ANOVA analysis showed a significant difference between the mean response factors obtained in the three day period (p-value < 0.05). Thus we could conclude that the response factors had to be determined on each day before quantitatively analyzing samples. The accuracy of the analytical method was assessed by using the percent recovery method. Results obtained showed that a mean percent recovery of 100.18 percent was obtained for BCM, with the absolute bias = 0.0004, and the percent bias = 0.18 percent. Hence the 95 confidence intervals for the percent recovery and percent bias are given by: (Lz, Uz) = (100.56 percent percent 102.15 percent), 13 (LPB, UPB) = (0.56 percent, 2.15 percent), respectively. Since the 95 percent confidence interval for the percent recovery contains 100, or equivalently, the 95 percent confidence interval for percent bias contains 0, the assay method is considered accurate and validated for BCM. In the same manner the accuracy and percent recovery for DCM and DBM was evaluated. The method was found to be accurate and validated for DBM, however, slightly biased in determining the recovered amount of DCM. With the analytical method validated, the batch production process could be evaluated. A total of six process variables, namely reaction time, water amount, temperature, volume of the two phases, stirring rate, and catalyst concentration, were selected for the study. The effects of the individual variables were determined in the classical manner, by varying only the one of interest while keeping all others constant. The experimental data generated was fit to a quadratic response surface model. The profile plots that were obtained from this model allowed a visual representation of the effect of the six variables. The experimental results obtained showed that the reaction follows pseudo zero-order kinetics and that the rate of the reaction is directly proportional to the concentration of the catalyst. The reaction obeys the Arrhenius equation, and the relatively high activation energy of 87kJ.mol -1 signifies that the rate constant is strongly dependent on the temperature of the reaction. The results also showed that the formation of BCM is favoured by an increase in the reaction temperature, catalyst concentration, and a high organic: aqueous phase ratio. Thus the synthesis of BCM using phase transfer catalyst could be optimised, to obtain a 100 percent yield BCM, by increasing both the reaction temperature to 105°C, and the concentration of the phase transfer catalyst -benzyl triethylammonium chloride - to 5.36 mol percent. The reaction time was also reduced to 6 hours.
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- Date Issued: 2011