A framework for communicating climate information to rural small-scale farmers in the Eastern Cape Province, South Africa using systems thinking approach
- Authors: Pindura, Tineyi Herbert https://orcid.org/0000-0001-7233-6222
- Date: 2022-02
- Subjects: Farms, Small , Agriculture -- Environmental aspects , Climatic changes
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/22809 , vital:52784
- Description: In the Eastern Cape of South Africa, rural small-scale farmers live in uncertain times characterized by climate change and variability, which intensify social, political and financial inequalities. Therefore, there is a need to increase the understanding and interpretation of climate information to minimize crop production risk, reduce rural small-scale farmers’ vulnerability to climate, and maximize opportunities. Increasing the resilience among rural small-scale farmers requires appropriate and viable practical approaches. By using systems thinking approach (and the Raymond Mhlaba Municipality in the Eastern Cape as a study area), this research disseminates the complex nature of current climate information frameworks. Through inputs from farmers (through a Farmers Research Group methodology) and climate data, this thesis developed a new framework for communicating climate information (herein referred as the climate information communication systems framework) to rural small-scale farmers. The proposed climate information communication systems framework successfully integrates scientific and traditional knowledge. The framework constitutes certain stages, where the farming system and crop identification is the first stage. The second stage is the requirements stage, which has two relationships: scientist to crop requirements and farmers to crop requirements. At the scientist to crop requirements level, users will examine crop requirements by combining climatic data and crop simulations, while at the farmers to crop requirement, rural small-scale farmers use the scientific information to plan for the farming season. The farmer then decides the planting and growing period as well as the harvest timing. The study suggests that building links between rural small-scale farmers, extension officers, and scientists makes sharing information easier. The proposed climate information framework design illustrates that stakeholders now have a personal relationship with climate information transmission and can influence the different actions to reduce the effect of climate change unpredictability. The study established that climate change and variability influence recent agricultural output trends. Recent temperature and rainfall trends could have resulted in low crop productivity in the study area. The study also reflected that women are a critical resource in agriculture and rural economy and that middle-aged men and youth are less interested in farming. The findings also showed that women are more receptive to climate information; hence, to promote access and use of climate information remains vital to consider gender-specific aspects for appropriate decision-making in the agriculture sector. The study also recommends enhancing the Farmers Research Group technique. In the past, the scope of this methodology has been narrowly focused, and it must be explored to incorporate additional types of climate information and more debate about how climate is related to the decisions farmers for implementation or consideration. , Thesis (PhD) -- Faculty of Science and Agriculture, 2022
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- Date Issued: 2022-02
A study of the selected wild edible plants utilized by indigenous people of the Amathole District in the Eastern Cape Province of South Africa
- Authors: Kwinana-Mandindi, Thozama Ndileka
- Date: 2012
- Subjects: Wild plants, Edible http://id.loc.gov/authorities/subjects/sh85146686
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19598 , vital:43147
- Description: Wild edible plants are an indispensible part of diets in some of the poor resourced rural societies. In many less resourced households a main meal comprises of a starch staple which is accompanied by a supplement of vegetables that provide the other nutritional elements as well as flavour to the meals. The vegetable relish (isishebo) thus, becomes an important component of the diet. The sustenance of many such resource poor indigenous societies over many generations has been as a result of their reliance on a readily available supply of their nutritional requirements, where edible wild plants formed the major food source. Wild edible plants provided the most important source of nutritional supply even during times of drought and famine. However, lifestyle changes have caused a serious reduction of the gathering and use of the wild edible vegetables, knowledge about them and the local culture are also lost with them. Unfortunately, others have come to regard their traditional food resource base as primitive and inferior and have come to rely on new exotic food plant whose supply is unstable and narrow compared to the wide variety of wild edible plants. Even when drought challenges play destruction with food availability, resulting in food shortages due to the reliance on cultivated crops that are poorly adapted to local conditions, communities cannot go back to the unknown food plants. However, detailed scientific investigations are needed to understand and preserve wild food uses. This study was undertaken to add to that body of knowledge. It started with an ethnobotanic survey of the use of wild food plants in 10 selected rural villages and peri-urban dwellings in the Amathole District of the Eastern Cape. These rural areas were chosen because of the belief that there are still individuals who possess the wealth of traditional knowledge within those remote areas in addition to that the villages are surrounded by indigenous vegetation from which they could be harvesting some indigenous food plants. Furthermore, the relationship between people and plants are often clearer in indigenous/traditional societies since the link between production and consumption is more direct. Besides the survey, this research employed various methods including Inductively Coupled Argon (ICP) analyses of minerals and vitamins, determination of phytochemicals and antioxidant/bio-activity that of, higher performance liquid chromatography (HPLC) determination of other vitamins, assessment of proximate and anti-nutrient compositions of raw and cooked samples of plants, scanning electron microscopy (SEM) and energy dispersive x-ray spectroscopy (EDXS) to look into the micro-morphology of leaves for details that might have a bearing in the nutrient composition of the wild edible vegetables. This was done with the aim to explore and highlight the wild-food-plant base of indigenous people, to investigate the nutritional value of the selected frequently consumed wild vegetables and to recommend ways of educating people on the value of such plants and the need to promote their continued sustainable use as well as preservation of them for the benefit of people who cannot afford a continuous nutritious meal particularly among rural communities. Twenty-five (25) indigenous wild food plants which included leafy vegetables, nuts and fruits species were identified as being arbitrarily gathered and utilised as food, of which seven wild leafy vegetable species were often mentioned as common among the 15 dwellings surveyed and most frequently consumed by the respondents. Two additional plants were also frequently used as flavoring and in their raw state respectively. Wild edible vegetables were mainly eaten boiled as ‘laxa’, mixed with maize meal as ‘imifino’, fried as relish ‘isishebo’ or raw for both snacking purposes and medicinal functions. Wild edible plant species in the Amathole District of the Eastern Cape-South Africa were documented with respect to their uses and knowledge or identification. Four indigenous wild vegetables (Chenopodium album, Solanum nigrum/nodiflorum, Amaranthus dubius and Urtica lobulata) frequently consumed by the indigenous communities in the study region were selected. All the plant species had a remarkably high content of pro-anthocyanidins (between 58.42 and 65.18 mg/g) and also exhibited high radical scavenging activity in vitro. S. nigrum and C. album were found to be rich sources of ascorbic acid, having 1.05mg/100g and 1.01mg/100g, respectively. The entire wild, traditionally edible plants contain reasonably good concentrations of riboflavin while U. lobulata was found to contain maximum amount of thiamine. All plant species were rich sources of minerals and vitamins (both water soluble and fat soluble). Appropriate cooking methods are to be used to enhance the bio-availability of vitamins and nutrients in general. Cooking generally improved the nutritive value in certain wild vegetables. However, some nutrients were drained away. For example micro-nutrient and anti-nutrient component in the ash were reduced in cooking. The EDXS analysis has shown that the indigenous, wild vegetables in the Amathole District of South Africa are excellent sources of minerals, while the mineral crystals present at the level of the mesophyll of the indigenous wild vegetables were probably mixtures of calcium oxalate, calcium sulphate and silica. Saponin, tannins, oxalates, phytates and alkaloids are present in all the indigenous wild vegetables, but in minimal safe quantities. Nutritional analysis of some wild food plants demonstrates that in many cases the nutritional quality of the plants is comparable and in some cases even superior to domesticated exotic varieties. Knowledge about gathering and use of some wild food species is common among the rural dwellers. However, most uses are known by few elderly informants only. Education, awareness campaigns and revival of use of wild edible plants directed at the youth particularly is essential and this can be done through all forms of media. , Thesis (PhD) (Ethnobotany) -- University of Fort Hare, 2012
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- Date Issued: 2012
Adsorption of antibiotic-resistant bacteria and their cell-free deoxyribonucleic acid harbouring resistance genes in drinking water with metal oxides
- Authors: Tobechukwu, Anthony Eric
- Date: 2022
- Subjects: Metallic oxides , DNA -- Synthesis , Drinking water
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/27787 , vital:69494
- Description: Access to cleaner water is essential to human health. The incidence of Antibiotic Resistant Bacteria ARB in drinking water and subsequent proliferation of Antibiotic Resistance Genes ARGs in drinking water is a concern for public health. The free DNA cassette harboring antibiotic resistance gene in drinking water has been linked with impaired public health. The ARGs allows bacteria to develop resistance towards antibiotics while ARB render antibiotics ineffective. Existing drinking water treatment technologies eg adsorption, ozonation and chlorination, have shown different levels of potency in the removal of conventional water pollutant. These technologies, which operating principles is based on oxidation or mass transfer, have been explored to gained an insight into their efficiency in the removal of ARB ARGs in water treatment. In general, methods that functions by mass transfer of the ARB ARGs is more effectively than bacteria oxidation. Consequently, adsorption technology was chosen using common metal oxide adsorbents. The adsorbents ZnOAg CeO2 and Al2O3 were synthesized via the self propagation combustion method. This method was selected because of the purity of the final product and the energy requirement. One of the challenges in the removal of ARB in drinking water is the release of ARGs. To address this concern, five different ZnOAg heterostructures were synthesized for the removal of Enterococci faecium. ZnOAg was chosen because of the bactericidal and bacteriostatic characteristics. The study revealed that the concentration of the precursors influences the microstructures of the adsorbents; however, it did not significantly affect the adsorption efficiency. The maximum adsorption capacity q34.11 CFUg was obtained for Ag1Zn3.5. The kinetic studies revealed that Ag1Zn1 and Ag1Zn2 adsorbents agreed to the pseudofirst-order kinetic equation and adsorbents Ag2Zn1 Ag3.5Zn1 and Ag1Zn3.5 agreed to the pseudo-second-order kinetic equation. Initial tap-water pH range was beneficial for the adsorption and the pH of the treated tap-water was within the WHO tap water recommendation 6.5 – 8.5 whereas the effect of ionic strength, anionic and cationic interference was insignificant in the adsorption of MDREF onto the different heterostructure. Interestingly the MDREF could retain its cell membrane integrity and resistance genes, suggesting that surface adsorption was the primary mechanism for the removal. Cerium IV oxide CeO2 was selected because of high adsorption towards phosphate, backbone base for DNA. To prevent the problem of antibiotic resistance, we have synthesized a CeO2 adsorbent that exhibit highly positive character in a wide pH range, via the simple self-propagation combustion protocol, for the removal of free DNA harboring antibiotic resistance genes. Molecular characterization of the extracted genes showed that the sizes for E. coli and inherent gyrB genes are 147 and 460 bp with a purity between 19 2.0. The XRD SEM TEM, and PZC results of the as-synthesized CeO2 showed an agglomerate of pure cubic-faced centered material and highly crystalline, with a net charge at pH 6.2. Experimental results revealed that the reaction proceeded via pseudo first-order kinetic, and it is governed by electrostatic attraction. The free- DNA solution pH electrolyte, and competing ions impacted on the adsorption process. Further experimental results showed that the as-synthesized CeO2 adsorbent has the potential to be used for the removal of free DNA harboring ARGs from tap-water even under oxic conditions. Alumina Al2O3 is an abundant adsorbent that has also shown high removal capacity towards phosphate. The highly pure synthesized Al2O3 adsorbent exhibit fluid-like behaviour under Scanning Electron Microscope SEM. The XRD pattern corresponds to αAl2O3. The adsorption kinetics was described by pseudo second orderadsorption capacity 11.7 μgg implying chemisorption, which agrees with the electrostatic force of attraction caused by opposing ions. This result was evident by the effect of different ions in the tap water. The synthesized α-Al2O3 has the potential for the removal of cell free DNA harbouring multiply resistant genes. , Thesis (MSc) -- Faculty of Science and Agriculture, 2022
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- Date Issued: 2022
Agro-morphological characterisation, nitrogen use efficiency and combining ability of quality protein maize (zea mays l.) genotypes for low nitrogen tolerance
- Authors: AdeOluwa, Olusola Oluyinka https://orcid.org/ 0000-0003-2145-7141
- Date: 2021-08
- Subjects: Corn -- Quality
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/21501 , vital:48855 , http://id.loc.gov/authorities/subjects/sh85032715
- Description: Low nitrogen stress tolerant Quality Protein Maize (QPM) genotypes will be of great benefit to farmers for increasing productivity in nitrogen depleted soils in the Eastern Cape (EC) Province, South Africa (SA). The current study evaluated: (i) QPM inbred lines for tolerance to low soil nitrogen, (ii) the Nitrogen Use Efficiency (NUE) of different QPM inbred lines, (iii) the combining ability of QPM genotypes for tolerance to low nitrogen, grain yield, and other agro-morphological traits, and (iv) the agro-morphological characteristics and adaptation of QPM hybrids to environments of different production potential in the Eastern Cape, South Africa. Thirty-two white-seeded QPM inbred lines obtained from CIMMYT-Zimbabwe and Quality Seeds (PTY) LTD were evaluated for tolerance to low soil nitrogen stress using two nitrogen (N) treatment levels: 0 kg N ha-1 and 30 kg N ha-1 under both glasshouse and field conditions at the Crop Research farm, University of Fort Hare, in two planting seasons. The study aimed at assessing the response of QPM inbred lines to low N, with a view to identifying low N tolerant types under both glasshouse and field conditions. Shoot length stress tolerance index (SHL STI) indicated lines L23, L29, L27, L13, L16, L17, L31, L14, L18 and L22 to be low soil N tolerant from the glasshouse study. From the field study, low N Stress Tolerance Index (STI) identified inbred lines L23, L31, L26, L28, L25, L29, L32, L4, L6, L3 and L2 as low soil N tolerant. These inbred lines also had high grain yields (GY) in the field under 0 kg N ha-1 (all ranked within the top ten except L2). They also had the potential for stable yields across environments considering their high Yield Stability Index (YSI), Mean Productivity (MP), Geometric Mean Productivity (GMP) and Stress Susceptibility Index (SSI) values. Both the glasshouse and field studies revealed inbred lines L22, L23, L26, L28, L25, L29 and L31 were common to both the glasshouse and field studies as being low soil N tolerant. These thirty-two parental QPM inbred lines were evaluated in the field for their nitrogen use efficiency (NUE) under five different nitrogen levels: 0, 30, 60, 90 and 120 kg N ha-1. The inbred lines studied under 0 kg N ha-1 and 30 kg N ha-1 indicated that N level expressed highly significant differences (P ≤ 0.001) for total nitrogen in biomass (Bio Total N), total nitrogen in grain (G Total N), grain yield (GY), nitrogen use efficiency (NUE) and almost all the indices estimated. The top six nutrient use efficient genotypes were L9, L14, L23, L25, L29 and L32 across N levels. However, the best and highest NUE was obtained from the lowest fertilizer dose, 30 kg N ha-1. Highly significant and positive correlation coefficients were found between Nitrogen Use Efficiency (NUE) and yield (+0.9), NUE and NUtE (+0.9), NUE and HI (Harvest Index) (+0.5), NUtE and yield (+0.99), HI and yield (+0.5) and NUtE and HI (+0.5). Thus, NUE, HI and NUtE could be good predictors of yield potential under low N soil conditions. Sixty-four testcross hybrids were generated from crossing these 32 QPM inbred lines with two QPM open pollinated varieties (OPVs) as testers in a line x tester design and were evaluated under 0 kg N ha-1 and 30 kg N ha-1 in the field. The objectives of the experiment were to: (i) identify high yielding hybrids with tolerance to low soil N in the EC; (ii) determine the combining abilities and mode of gene action for various traits under low and high nitrogen conditions; and (iii) group the inbred lines into heterotic groups for future use in the breeding program. Results revealed that under 30 kg N ha-1 (30N) condition, both additive and non-additive gene effects were observed with less importance of non-additive gene action for grain yield. Based on specific combining ability (SCA) effects, hybrids LNC22, LNC31, LOB22, LNC30, LNC29, LOB11, LNC18, LOB30, LOB19 and LNC24 showed outstanding performance under 0 kg N ha-1 (0N) condition with relatively acceptable SCA under 30N for yield. Inbred lines L6 (1.63), L22 (1.74), L29 (1.83) and L30 (1.24) showed positive and significant GCAs for grain yield under 0N. They were identified as the best combiners for grain yield as they were among the top ten performers for GCA under 0N. They can be very useful sources of low N tolerance genes. Two heterotic groups were formed under 0 kg N ha-1 and 30 kg N ha-1 conditions, and they will be useful for future hybrid development in the breeding program. Furthermore, these thirty-two QPM inbred lines were utilised as parental lines to generate seventy-six single cross hybrids. These single cross hybrids were evaluated across three environments of varying production potential in the Eastern Cape (EC), during the 2016/17 and 2017/18 summer seasons. Non-QPM hybrids namely PAN5Q649R and Phb31MO7BR, as well as QPM OPVs OBATANPA and Nelson's Choice were included in these preliminary variety trials (PVTs) as checks. Twenty-five hybrids expressing high values for the Smith – Hazel selection index were identified across sites over years. Among those hybrids were two checks, namely Q16 (PAN5Q649R) and Q33 (Phb31MO7BR). The top five high – yielding hybrids selected based on the selection index were considered to be the most productive, stable and adaptable based on the GGE biplot and AMMI stability values. None of these single cross hybrids over yielded the best hybrid check (Q16) in the current study. A high potential environment, Centane, was the ideal environments for evaluating genotypes in the present study. The studies showed inbred lines L22, L23, L26, L28, L25, L29 and L31 to be low N stress tolerant at 0 kg N ha-1 based on the low N stress tolerance indices under glasshouse and the field conditions; they were also among the top ten grain-yielders under field conditions at 0 kg N ha-1. Also, in the NUE study, they were found to be among the top ten most N-efficient inbred lines under low N soils, under 30 kg N ha-1, and were among the top twenty-four inbred lines with high NUE values across the N levels in the study. Inbred lines L29 and L22 also produced testcross hybrids that were among the top twenty based on GY under 0 kg N ha-1. The testcross hybrids produced from these inbred lines were also among the top twenty-five with outstanding SCA effects for GY. These inbred lines were also parental lines of some of the top twenty- five best hybrids selected based on the Smith – Hazel selection index in the PVT study. Inbred lines L22, L23, L26, L28, L25, L29 and L31 can therefore further be evaluated and used as sources of N-tolerance genes in QPM breeding programs. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
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- Date Issued: 2021-08
An investigation of source rocks and depositional environments on acid mine drainage in South African coal mines: a comparison of the main Karoo basin and sub-basins.
- Authors: Ncube, Lindani
- Date: 2015
- Subjects: Mine drainage -- Environmental aspects -- South Africa , Coal mines and mining -- Environmental aspects -- South Africa , Acid mine drainage -- Environmental aspects -- South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19556 , vital:43139
- Description: The coal deposits have been and continue to be the primary source of energy in South Africa. The continuous use of coal presents many challenges that includes genesis of acid mine drainage (AMD) which is as a result of the oxidation of predominant pyrite (FeS2) and other sulphides. The aim of this study was to investigate the role of source rocks and their depositional environments on AMD generation in South African coal mine environments. Five collieries from five coalfields were selected as case studies: Brandspruit in the Highveld, Vaalkrantz in the Vryheid, the Elitheni in the Molteno-Indwe, the Arnot in the Witbank and the Malatleng Exploration Project in the Waterberg Coalfields. Brandspruit, Vaalkrantz and Elitheni Collieries are located in the Main Karoo Basin, while the Witbank and the Waterberg Coalfields are located in Sub-Basins. The study investigated a variety of indices such as palaeo-depositional environments, mineral assemblages, geochemical signatures, water quality parameters, acid base accounting (ABA) and water leach tests for the coal and associated non-coal strata. An effort was made to establish the relationship between the mineralogy of the studied lithologies and the associated water quality. The study resulted in delineation of detrital and diagenetic rock components and interpretation of source area of rock types and the origin and timing of diagenetic alterations. Sandstone units are prevalent, except in the Waterberg Coalfield where mudstones are prevalent. Classifications of the mineralogical composition with descriptive adjectives yield the rock names arkose to sub-arkose categories in the Main Karoo Basin, and sub-arenites to quartz arenites in the Sub-Basins with the sandstones of recycled origin. Further, the sandstones of the Main Karoo Basin are of mixed provenance whilst those of Sub-Basins represent cratonic interior provenance. Sandstone from the Main Karoo Basin generally exhibit high concentrations of feldspars, which favour either high relief, arid or arctic climates with less chemical weathering at the source area. The presence of glauconite in sediments of the Main Karoo Basin attests to a marine continental shelf depositional environment. Sediments of the Main Karoo Basin have high contents of tadpole-shaped pyrite in coal and non-coal strata as compared to sediments of the Sub-Basins. The observed pyrite is ascribed to early diagenetic origin, and is closely related to the generation of acid mining drainage. The sediments have experienced an involved sequence of diagenetic alterations. The alterations considered to be typical for sandstones in the Main Karoo Basin are calcite cementation, feldspar dissolution, kaolinite infilling, pyrite grain coatings, albitization and pressure solution; whereas, quartz overgrowth and clay matrix filling are characteristics of sediments of Sub-Basins. The sequence and distribution of these alterations are related to the source mineral composition, depositional environment, stratigraphic relationships and burial history of the sediments. A direct link exists among the depositional environments, the mineral assemblages and the geochemical compositions of the lithologies. SiO2 is the dominant major oxide and is abundant in coals from coalfields located in the Sub-Basins. Si, Al, Fe, Ca, S, Mg, K and Na show strong association with their discrete minerals. The sandstones are substantially enriched in elements that are chemically immobile and associated with terrigenous influx, such as SiO2, Al2O3, and TiO2. The observed high contents of SiO2 are probably due to source rocks and silicification. SiO2, Al2O3 and TiO2 are related to clay and heavy minerals, with elevated Fe2O3 (Total) content in sediments of the Main Karoo Basin ascribed to sulphidization. Sediments from the Main Karoo Basin are enriched in both Na2O and K2O due to albitization and muscovitization. Substantial concentrations of Ba, Rb and Zr are in accordance to the high amount of phyllosilicates and heavy minerals. Muscovitization contributes to the correlation of Rb and Ba with K2O. The shales are substantially depleted in SiO2, CaO, MgO, Na2O, K2O, TiO2 and Fe2O3 due to weathering and diagenetic alteration, but are enriched in Al2O3 and P2O5. The ABA test clearly indicates that sandstones from the Main Karoo Basin have a potential of generating AMD as they contain sufficient pyrite to generate acid, with the final pH values of the samples turning acidic upon complete oxidation of pyrite. On the contrary, sediments of SubBasins contain sufficient calcite that serves to limit the amount of acid generation. Both sandstone and coal from collieries representing the Main Karoo Basin are characterised by elevated contents of S percent in comparison to coal from collieries representing the Sub-Basins. In general, the quality of water is as a result of a combination of complex geochemical interactions that involves various ions from different sources. Water leaching test shows that the leachates have varied chemical compositions with pH values in the range of 4.5-9 for the sandstone, and 2– 8.9 for the coal leachates. Variations in the pH values are attributed to regional phenomena controlled by the mineralogical and hydrological environments. Furthermore, the variation in pH is ascribed to the presence of acid forming pyrite and acid neutralizing carbonate minerals that are highly reactive in the mining environment. Elements Na, Ca, Mg and K occur in non-compliant concentrations in both coal and non-coal leachates indicating their abundance in all of the lithologies. Na enrichment in the lithologies is associated with albite, clay minerals and Al-Ksulphate coatings. Elements Fe, Al, Cd and Pb are easily leached from the lithologies. According to the equilibrium model, gibbsite, cuprite, diaspore and boehmite are the supersaturated minerals in the lithologies. Influencing factors such as the mineralogical composition of rocks are reflected in the wide variation of pH, TDS, EC and the ion concentrations of the studied water samples. The pH of the studied areas is neutral to alkaline. High levels of TDS and EC are observed in the Brandspruit Colliery, which is due to dissolution of soluble salts from the rock sequence that the water passes through. The anion chemistry shows the dominance of SO4 2- in the surface and groundwater of Brandspruit, Vaalkrantz and Elitheni Collieries, whereas HCO3 - dominates in the Arnot Colliery. SO4 2- is ascribed to the oxidative weathering of pyrites. Cldominates in groundwater from the Arnot Colliery and the Waterberg Coalfield. The cation chemistry is dominated by Na+ in the surface and groundwater of the Brandspruit, Vaalkrantz and Elitheni Collieries. Mg2+ dominates in groundwater from the Arnot Colliery, while K+ dominates in the Waterberg Coalfield. Fe is highly enriched in water from the Brandspruit Colliery, and is linked to the oxidation of pyrite. Carbonates are the supersaturated minerals in the Sub-Basins whilst sulphates are supersaturated in the Main Karoo Basin. The research shows that variations in regional mineral distribution is a result of a palaeo-deposition environment that was of marine nature for the coal sequence in the Main Karoo Basin and of fresh water for the coal sequence in Sub-Basins. A direct link therefore exists between depositional environments, mineral assemblages and whole rock geochemistry. It can be concluded that AMD is directly linked to pyrite and other sulphides, the coal mines located in the Main Karoo Basin have the possibility to deteriorate surface- and ground-water quality and to generate AMD during the mining processes; coal miners need to seriously consider applying environmental protection measures when mining coal in the Main Karoo Basin. Whereas, coal mining in the Sub-Basins has low possibility of generating AMD and pollution. , Thesis (PhD) (Geology) -- University of Fort Hare, 2015
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- Date Issued: 2015
Aspects of the ecology of the estuarine round-herring Gilchristella aestuaria (Pisces: Clupeidae) and its small-scale fishery potential
- Authors: Zvavahera, Munetsi https://orcid.org/0000-0002-5337-1943
- Date: 2021-05
- Subjects: Small-scale fisheries , Silversides
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/22765 , vital:52752
- Description: In the past two decades, there has been increasing pressure for small-scale inland fisheries to play a central role in food and nutrient security for poor communities in South Africa. For decades, South African inland fisheries have focussed on the exploitation of large fish species and generally ignored the exploitation of inland small fish species (SFS). This research aimed to assess the ecology and small-scale fishery potential of the estuarine round-herring, Gilchristella aestuaria. To understand the ecology of G. aestuaria better, morphometric trait analysis and fish condition of populations in relation to environmental variables (salinity, pH, temperature, turbidity and chlorophyll-a) were done. Fish were supplemented with samples acquired from the SAIAB collection facility for 14 sites to cover all the three South African biogeographic regions, stretching from Lake Sibaya (KZN) to the Orange River estuary in the western parts of the country. The morphometric trait analysis showed that G. aestuaria populations can be distinguished based on the trait variation, however there were many overlaps for populations that are interconnected, with distant/ geographically separated populations showing clear differences. Morphometric traits of the G. aestuaria population were significantly different, however there was no strong directional relationship with environmental variables and variation in morphometric traits. However, fish condition as measured by Fulton’s condition (K) and relative weight (Wr) showed variation between populations found in different environments. These differences suggest that these populations must be managed differently if G. aestuaria is to be exploited in managed fisheries. To determine the potential nutrient value of G. aestuaria to the human diet, samples from two freshwater sites and five estuarine sites were analysed for essential macro and micronutrients. The nutrient content of G. aestuaria revealed there is potential for exploitation, as the species has a high macro (protein and fat) and micronutrient composition (calcium, iron and zinc). Mean ± SD of selected nutrients were protein (61.7±5.0 g/100g), fat (20.4±3.7g/ 100g), calcium (3507.5±314.0mg), iron (40.37±14.0mg/ 100g), zinc (22.47±5.6mg/ 100) and vitamin A (37.3±44.4 RAE/ 100g). The nutrient composition of fish collected from freshwater sites was comparable to those collected from estuarine environments. Using the recommended dietary allowances (RDA) from literature, the mass of fish and the number of fish that would provide a minimum amount for each nutrient were calculated. A child would require only 13.4g of dry G. aestuaria or approximately 74 dried fish to meet the daily requirements of zinc. Other minerals such as iron and calcium also showed a similar low weight or number of fish required to meet daily requirements for the different categories. A small number of G. aestuaria are needed to meet RDA for groups (children, adult men, adult women, pregnant women and lactating mothers). A comparison was done for the nutrient composition of G. aestuaria with reference species that are already harvested for human consumption in some African and Asian countries. The protein content of G. aestuaria was comparable to Chisense (Microthrissa moeruensis) and Kapenta Limnothrissa miodon), while the fat composition was more than twice Chisense and Kapenta. Comparing the mineral composition, G. aestuaria had more than three times higher calcium than Mola (Amblypharyngodon mola) and Puti (Puntius sophore). Zinc composition was four times higher than M. moeruensis and L. miodon. Further exploration of the ecology of G. aestuaria was studied using the Sundays River irrigations ponds as a case study that would represent small impoundments across South Africa. Species rank abundance curve and catch per unit effort (CPUE) on the Sundays Irrigation ponds revealed that G. aestuaria dominated numerically and biomass in the Sundays River irrigation ponds. To assess the potential of harvesting G. aestuaria harvesting experiments were conducted using depletion (removal) sampling. Catchweight (kg) ranged from 2.16 (1.03; 3.28) to 61.25 (44.40; 78.09) kg and the estimated biomass from the depletion model ranged from 1.05 to 40.19 kg/ha for September 2019. The depletion model revealed that small impoundments have high biomass per hectare of G. aestuaria ranging from which indicates that the species may not support a commercial fishery but small-scale fisheries. In conclusion, G. aestuaria could become a meaningful contribution to the food and nutrient security of poor communities where available as a food source through small-scale fishery exploitation. The extent of this contribution may depend on its production potential in various regions and environments. More research is however needed to determine the long-term sustainability of harvesting of G aestuaria by looking at how populations respond to harvesting. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
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- Date Issued: 2021-05
Assessment of the human health implications of climate variability in East London, Eastern Cape, South Africa
- Authors: Orimoloye, Israel Ropo https://orcid.org/0000-0001-5058-2799
- Date: 2018
- Subjects: Climatic changes http://id.loc.gov/authorities/subjects/sh85027037
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19715 , vital:43171
- Description: Impacts associated with climate variability and extreme heat are already obvious in varying degrees and expected to be disruptive in the near future across the globe especially in the urban regions. Urban areas have distinctive features that leave their residents and properties vulnerable to extreme climate events. Global temperatures continue to change, reaching new levels almost every year for the past two decades. However, even though the causes are debated it is evident that climate variability is real. Climate variability and disaster risk are threats to human health that adversely reinforce each other. Better knowledge on the association between climate change, variability and extreme weather-related illness is needed and can aid strategies to reduce vulnerabilities. The impacts of climate variability on the health of residents in East London (EL) area in the Eastern Cape Province, South Africa were explored through four interdependent research segments. The first section examined the climate variability and urban surface thermal characteristics implication on human health using Remote Sensing (RS) and Geographic Information System (GIS) techniques. Remote sensing was used to assess the Land Surface Temperature (LST) and estimated Radiation (R) of East London area from Landsat Thematic Mapper (TM) images for 1986, 1996, 2006 as well as from Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS) for 2016 spanning a period of 30 years. Rapid urbanization and land cover changes in this area have contributed significantly to this drastic change in the natural land surface characteristics (increased land surface temperature and surface solar radiation). For instance, vegetation cover declined by about 358.812km2 while built-up areas increased by 175.473km2 during this period which correlates with the area thermal characteristics changes. Radiation levels also increased over the years with values exceeding the global solar radiation index. Exposure to increased surface radiation poses risks of heat stroke, skin cancer and heart disease to the local population. Consequently, this study provides pertinent information on human health sustainability and epidemiological case management. The second part explored past temperature and humidity trends (1986-2016) and projects future trends (2017-2030). The historical data of meteorological variables were obtained from the archives of the South African Weather Service and analyzed using the ordinary least square regression model in GRETL (GNU Regression Econometric and Time-series Library) statistical software. This study discovered a local consistency between models and the observations add to existing knowledge and this is crucial in knowing the shifts in climatic change as well as recognizing variability and its conflicting effects on human health, environment, agriculture, ecological sustainability and socioeconomic status in the region. The third segment assessed the potential impacts of climate variability on health using existing heat indices during the study period. The results demonstrated that in East London from 1986 to 2016 during summer and autumn (December to May) of various years exceeded high heat index values. It is obvious that summer and autumn months are more vulnerable to heat extreme and humidex. The humidex and Heat Index (HI) increased annually by 0.03 percent and 0.9 percent respectively throughout the study period. The increment in the various indices showed highly significant ill-health and environmental impacts on humans especially with prolonged exposure. The last segment appraised the association between climatic elements and epidemiological incidences of the study area between 2012 and 2016. The epidemiology incidences data were obtained from the archives of the Cecilia Makiwane Hospital in East London area and National Tertiary Service Grant (NTSG) database for the period. The results have showed that there exists significant effects of climate variability on the health of East London residents and these have been identified to have negative impacts on health of the people in the area. This study also revealed noticeable impacts of extreme heat on human health and a positive correlation between meteorological components (HI and temperature) and epidemiological cases (cardiovascular, skin cancer and diarrhea) during the study period. , Thesis (PhD) (Geography) -- University of Fort Hare, 2018
- Full Text:
- Date Issued: 2018
Assessment of the human health implications of climate variability in East London, Eastern Cape, South Africa
- Authors: Orimoloye, Israel Ropo https://orcid.org/0000-0001-5058-2799
- Date: 2018-05
- Subjects: Climatic changes , Global temperature changes
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/25360 , vital:64224
- Description: Impacts associated with climate variability and extreme heat are already obvious in varying degrees and expected to be disruptive in the near future across the globe especially in the urban regions. Urban areas have distinctive features that leave their residents and properties vulnerable to extreme climate events. Global temperatures continue to change, reaching new levels almost every year for the past two decades. However, even though the causes are debated it is evident that climate variability is real. Climate variability and disaster risk are threats to human health that adversely reinforce each other. Better knowledge on the association between climate change, variability and extreme weather-related illness is needed and can aid strategies to reduce vulnerabilities. The impacts of climate variability on the health of residents in East London (EL) area in the Eastern Cape Province, South Africa were explored through four interdependent research segments. The first section examined the climate variability and urban surface thermal characteristics implication on human health using Remote Sensing (RS) and Geographic Information System (GIS) techniques. Remote sensing was used to assess the Land Surface Temperature (LST) and estimated Radiation (R) of East London area from Landsat Thematic Mapper (TM) images for 1986, 1996, 2006 as well as from Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS) for 2016 spanning a period of 30 years. Rapid urbanization and land cover changes in this area have contributed significantly to this drastic change in the natural land surface characteristics (increased land surface temperature and surface solar radiation). For instance, vegetation cover declined by about 358.812km2 while built-up areas increased by 175.473km2 during this period which correlates with the area thermal characteristics changes. Radiation levels also increased over the years with values exceeding the global solar radiation index. Exposure to increased surface radiation poses risks of heat stroke, skin cancer and heart disease to the local population. Consequently, this study provides pertinent information on human health sustainability and epidemiological case management. The second part explored past temperature and humidity trends (1986-2016) and projects future trends (2017-2030). The historical data of meteorological variables were obtained from the archives of the South African Weather Service and analyzed using the ordinary least square regression model in GRETL (GNU Regression Econometric and Time-series Library) statistical software. This study discovered a local consistency between models and the observations add to existing knowledge and this is crucial in knowing the shifts in climatic change as well as recognizing variability and its conflicting effects on human health, environment, agriculture, ecological sustainability and socioeconomic status in the region. The third segment assessed the potential impacts of climate variability on health using existing heat indices during the study period. The results demonstrated that in East London from 1986 to 2016 during summer and autumn (December to May) of various years exceeded high heat index values. It is obvious that summer and autumn months are more vulnerable to heat extreme and humidex. The humidex and Heat Index (HI) increased annually by 0.03percent and 0.9percent respectively throughout the study period. The increment in the various indices showed highly significant ill-health and environmental impacts on humans especially with prolonged exposure. The last segment appraised the association between climatic elements and epidemiological incidences of the study area between 2012 and 2016. The epidemiology incidences data were obtained from the archives of the Cecilia Makiwane Hospital in East London area and National Tertiary Service Grant (NTSG) database for the period. The results have showed that there exists significant effects of climate variability on the health of East London residents and these have been identified to have negative impacts on health of the people in the area. This study also revealed noticeable impacts of extreme heat on human health and a positive correlation between meteorological components (HI and temperature) and epidemiological cases (cardiovascular, skin cancer and diarrhea) during the study period. , Thesis (PhD) -- Faculty of Science and Agriculture, 2018
- Full Text:
- Date Issued: 2018-05
Assessment of the physicochemical and microbiological qualities of Tyume River in Amathole District in the Eastern Cape Province, South Africa
- Authors: Sibanda, Timothy https://orcid.org/0000-0002-6864-3796
- Date: 2013-05
- Subjects: Water -- Purification , Sewage -- Purification
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/24465 , vital:62812
- Description: The bioflocculant-producing potentials of three marine bacteria isolated from the sediment samples of Algoa Bay in the Eastern Cape Province of South Africa were assessed. Analysis of the partial nucleotide sequence of the 16S rDNA of the bacteria revealed 99 percent, 99 percent, and 98 percent similarity to Cobetia sp. L222, Bacillus sp. A-5A, and Bacillus sp. HXG-C1 respectively and the sequence was deposited in GenBank as Cobetia sp. OAUIFE, Bacillus sp. MAYA and Bacillus sp. Gilbert (accession number JF799092, JF799093, and HQ537128 respectively). Cultivation condition studies for Cobetia sp. OAUIFE revealed that bioflocculant production was optimal with an inoculum size of 2 percent (v/v), initial pH of 6.0, Mn2+ as the metal ion, and glucose as the carbon source. Metal ions, including Na+, K+, Li+, Ca2+and Mg2+ stimulated bioflocculant production resulting in flocculating activity of above 90 percent. This crude bioflocculant is thermally stable, with about 78 percent of its flocculating activity remaining after heating at 100 oC for 25 min. Analysis of the purified bioflocculant revealed it to be an acidic extracellular polysaccharide. FTIR analysis revealed the presence of methoxyl, hydroxyl, and carboxyl - groups in the compound bioflocculant and SEM micrograph of the bioflocculant revealed a crystal-linear structure. On the other hand, bioflocculant production by Bacillus sp. MAYA was optimal when glucose (95.6 percent flocculating activity) and ammonium nitrate (83.3 percent flocculating activity) were used as carbon and nitrogen sources respectively; inoculum size was 2 percent (v/v); initial pH 6; and Ca2+ as coagulant aid. Chemical analysis of the purified bioflocculant shows that it is composed of uronic acid, neutral sugar and protein. FTIR analysis also revealed the presence of methoxyl, hydroxyl, carboxyl and amino- groups in this bioflocculant. The bioflocculant is thermostable with about 65.6 percent residual flocculating activity retained after heating the bioflocculant at 100 oC for 25 min. However bioflocculant production by Bacillus sp. Gilbert was optimal when sodium carbonate (95.2 percent flocculating activity) and potassium nitrate (76.6 percent flocculating activity) were used as carbon and nitrogen sources respectively; inoculum size was 3 percent (v/v); initial pH 9; and Al3+ as cation. The crude bioflocculant retained 44.2 percent residual flocculating activity after heating at 100 oC for 15 min. FTIR analysis reveals the presence of hydroxyl, carboxyl and methylene - groups in the compound bioflocculant. SEM micrograph of the bioflocculant revealed an amorphous compound. The consortia of these bacteria strains also produced bioflocculants with high flocculating activities which were highly efficient in removing turbidity and chemical oxygen demand (COD) from brewery wastewater, diary wastewater and river water. The bioflocculants from the consortia seemed better than traditional flocculants such as alum . The characteristics of the bioflocculant produced by the consortium of Cobetia sp. OAUIFE and Bacillus sp. MAYA showed that this extracellular bioflocculant, composed of 66percent uronic acid and 31percent protein and an optimum flocculation (90 percent) of kaolin suspension, when the dosage concentration was 0.8 mg/ml, under weak alkaline pH of 8, and Ca2+ as a coagulant aid. The bioflocculant is thermally stable, with a high residual flocculating activity of 86.7 percent, 89.3 percent and 87.0 percent after heating at 50 oC, 80 oC and 100 oC for 25 min respectively. The FTIR analysis of the bioflocculant indicated the presence of hydroxyl, amino, carbonyl and carboxyl functional groups. Scanning electron microscopy (SEM) image revealed a crystal-linear spongy-like bioflocculant structure and EDX analysis of the purified bioflocculant showed that the elemental composition in mass proportion of C,N,O,S and P was 6.67:6.23:37.55:0.38:4.42 (percent w/w). However, the characteristics of the bioflocculant produced by the consortium of Cobetia sp OAUIFE and Bacillus sp. Gilbert showed an optimum flocculation (90 percent) of kaolin suspension when the dosage concentration was 0.2 mg/ml, under neutral pH of 7, and Ca2+ as a coagulant aid. The FTIR analysis of the bioflocculant Tyume River water samples were collected monthly, over a 12-month period starting from August 2010 and ending in July 2011, and transported on ice to the Applied and Environmental Microbiology Research Group (AEMREG) Laboratory at the University of Fort Hare, Alice for analyses within 6 h of collection. Electrical conductivity (EC), total dissolved solids (TDS), temperature, pH and dissolved oxygen (DO) of water samples were determined in situ using a multi-parameter ion-specific meter. Concentrations of orthophosphate and total nitrogen (nitrate + nitrite) were determined by standard photometric methods. Total coliforms (TC), faecal coliforms (FC) and enterococci were determined by the membrane filtration method. Viruses in water samples were concentrated using the adsorption-elution method, followed by extraction of viral nucleic acids and purification done using commercially available kits. The concentrations of human enteric viruses in the river-water samples were estimated using quantitative PCR. RNA viruses were quantified in a two-step protocol where RNA was first transcribed into cDNA in a separate reverse-transcription step. Adenovirus species and serotypes were simultaneously detected using serotype-specific multiplex PCR. Norovirus genogroups GI and GII were detected by semi-nested PCR. The risk of infection associated with recreational and domestic use of the water was also estimated. Biochemical oxygen demand (BOD) levels fell within the stipulated BOD guideline of 10 mg/ℓ for surface waters where full contact use is allowed and ≤ 30 mg/ℓ where public access is prohibited, restricted, or infrequent. DO concentrations generally ranged between 7.47 mg/ℓ and 10.42 mg/ℓ, well within the target water quality requirements. The temperature regime ranged between 6°C and 28°C and for most sampling sites, the temperature regimes were within the acceptable limit of no risk (≤ 25°C) for domestic water uses in South Africa. EC ranged between 47 μS/cm and 408 μS/cm well within the South African target water quality EC guideline of 700 μS/cm though it was observed to increase as the river flowed through settlements. The pH in the period beginning September 2010 through to January 2011 was consistently below pH 9, but from February 2011 to June 2011 the pH significantly increased to between pH 10 and pH 11 at most sampling sites. Unpolluted waters normally show a pH of between 6.5 and 8.5. Most of the pH values observed in this study lie between pH 8.5 and pH 10.8 levels which are not far off from the upper level guideline of pH 9.0 for domestic use. Turbidity ranged between 6 NTU and 281 and fell short of the target water quality range (0 NTU to 1 NTU) of no risk for domestic water uses in South Africa. Monthly TDS values and EC values showed direct proportionality. TDS concentrations at all sites fell within the acceptable guideline of 0 mg/ℓ to 450 mg/ℓ of TDS for domestic use. Nutrient profiles were as follows: nitrate (0.18 mg/ℓ to 4.21 mg/ℓ); nitrite (0.02 mg/ℓ to 2.35 mg/ℓ); and orthophosphate (0.06 mg/ℓ to 2.72 mg/ℓ). The bacteriological qualities of the water were poor, exceeding the guideline of 200 CFU/100 mℓ and 33 CFU/100 mℓ for FC and enterococci respectively, for recreational water. FC counts also exceeded the 1 000 CFU/100 mℓ guideline for water used in fresh produce irrigation. Generally, higher counts of TC, FC and enterococci were recorded at the sampling sites located at the lower reaches of the river compared to the upper reaches. Adenovirus was detected in 31percent of the river samples in concentrations ranging between 1.0×100 genome copies/ℓ and 8.49×104 genome copies/ℓ. Serotyping showed the presence of species C adenovirus serotypes 1, 2, 6 and 7, and species F adenovirus serotype 41. The prevalence of norovirus was 4percent while rotavirus was detected in 4percent of river samples in concentrations ranging between 9×100 genome copies/ℓ and 5.64×103 genome copies/ℓ. Hepatitis A virus was detected in 13percent of river samples in concentrations ranging between1.67×103 and 1.64×104 genome copies/ℓ while enteroviruses were not detected. Detection of enteric viruses was inversely correlated to temperature. Risk analysis showed that both hepatitis A virus and adenovirus presented significantly higher risk of infection values compared to rotavirus in the case of ingestion of 10 mℓ or 100 mℓ of water from Tyume River while enteroviruses did not present any significant risk of infection. Tyume River water samples also did not conform to the US Environmental Protection Agency (US EPA) bacterial criteria of 200 CFU/100 mℓ faecal coliforms and 33 CFU/100 mℓ enterococci for bathing waters. Whereas the physicochemical parameters showed that Tyume River water was relatively clean, the bacteriological water quality was poor. Most of the microbiological contamination observed in this study (especially FIBs) can be blamed on inadequate sanitary infrastructure as we observed that open defecation is commonplace in this catchment, which also serves as a conduit for effluent discharges from wastewater-treatment facilities. Enteric viruses were detected along the course of the river in a sporadic pattern, generally not related to natural hydrological cycles and so we conclude that the presence of enteric viruses in the river is suggestive of the dynamics of the same in the host population. Even though the proportion of infective viruses was estimated in this study, fact remains that there is considerable risk of infection posed by the use of raw surface water for either domestic or recreational use. This study further confirmed the lack of correlation between faecal indicator bacteria and enteric virus occurrence in environmental waters, showing that assaying for enteric viruses in environmental waters remains the best method for determining the health risks associated with the use of faecally contaminated water. , Thesis (PhD) -- Faculty of Science and Agriculture, 2013
- Full Text:
- Date Issued: 2013-05
Assessment of the water quality, incidence of enteric viruses and microbial risk in the Buffalo River in the Eastern Cape Province of South Africa
- Authors: Chigor, Vincent Nnamdigadi https://orcid.org/0000-0002-0811-4526
- Date: 2013-03
- Subjects: Water quality , Water -- Microbiology
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/24272 , vital:62596
- Description: Buffalo River is an important water resource in the Eastern Cape Province of South Africa. Over a 1-year period (August 2010–July 2011), the water quality and incidence of human enteric viruses (HEntVs) was assessed, using standard methods and molecular techniques and a total 72 composite water samples collected monthly from a total of 6 sites located on the river and three dams along its course. The sites were selected based on a number of factors including geographical location, anthropogenic activity/major water use, rural/urban status and access. A total of 13 physicochemical parameters were determined using the standard methods. The counts of faecal indicator bacteria (FIB) including total coliforms (TC), faecal coliforms (FC) and enterococci (ENT) were determined by the membrane filtration technique. HEntVs were concentrated using an adsorption-elution method based on cation (Al3+)-coated membrane filter. Real-time quantitative polymerase chain reaction (qPCR) was used for the detection and quantification of human adenoviruses (HAdV), and real-time reverse transcriptase-PCR (RT-qPCR) was used for the quantitative detection of hepatitis A virus (HAV), human rotaviruses (RoV) and enteroviruses (EnV). The detected HAdV were characterized by multiplex conventional/semi-nested PCR methods. The risks for human health constituted by exposure to the detected HEntVs at the six sites were evaluated by a static quantitative microbial risk assessment (QMRA) using both the exponential and beta-Poisson models. Water temperature ranged from 11 to 28oC, while pH varied from 6.6 to 10.7, and turbidity from 1.7 to 133 NTU. Electrical conductivity (EC), total dissolved solids (TDS) and salinity showed drastic variations (42.3-46693 μS/cm, 20.3–23350 mg/L and 0.02–33.8 PSU respectively). The concentrations of other parameters ranged as follows: chloride (3.7–168 mg/L); DO (6.9–11.1); BOD (0.6–9.4); COD (3.7–45.9); nitrite-nitrogen (0.02–0.21); nitrate-nitrogen (1–4.47); and orthophosphate (0.01–1.72). TC, FC and ENT counts were high and ranged from 1.9 × 102–3.8 × 107 cfu/100 mL, 0–3.0×105 cfu/100 mL and 0–5.3 × 105 cfu/100 mL for TC, FC and ENT respectively. Significantly (P<0.05) higher concentrations of FC and ENT were observed at the sampling sites located at the lower reaches of the river compared to the upper reaches. The FIB counts mostly exceeded the maximum limits recommended by national and international guidelines for safe fresh produce irrigation, domestic applications, full-contact recreation and livestock watering. Significant (P<0.01) positive correlations existed between TDS and salinity (r=0.921), between turbidity and each of TC (r=0.552) and FC (r=0.425), as well as between BOD and each of TC (r=0.282), FC (r=0.472) and ENT (r=0.552). Phosphate correlated positively with FC (r=0.424), and nitrate also with the same, FC (r=0.460). A strong positive correlation existed between FC and ENT (r=0.915). There existed a significant (P˂0.01) inverse correlation between enteric viruses and each of water temperature (r=-0.191) and pH (r=-0.234). No correlation could be deduced between enteric viruses and all the tested chemical and bacteriological parameters. HAV, HAdV, RoV and EnV were detected in 43.1percent, 34.7percent, 13.9percent and 9.7percent respectively of the total 72 water samples tested. Two or more viruses were detected in 22.2 percent of the samples. HAdV were detected at 5 of the 6 sampling sites with concentrations ranging from 1.2×101 genome copies (GC)/litre to 4.71×103 GC/litre. Epidemiologically important serotypes, Ad40/41 constituted 83.3percent, while Ad21 made up 16.7percent of all the HAdV detected. HAV was detected at all the sites in significantly (p < 0.05) varying concentrations that ranged from 1.5 × 101–1.9 × 105 GC/litre compared to RoV and EnV. Neither of RoV nor EnV was detected at any of the dams. The detected concentrations at the non-dam sites ranged from 2.5 × 101–2.1 × 103 GC/litre and 1.3 × 101–8.6 × 101 GC/litre for RoV and EnV respectively. The values for the estimated daily risks of enteric virus infection varied with sites and exposure scenario, and ranged from 7.31×10-3–1 (for HAdV), 4.23×10-2–6.54×10-1 (RoV), 2.32×10-4–1.73×10-1 (HAV) and 1.32×10-4–5.70×10-2 (EnV). The yearly risks of infection in individuals exposed to the river/dam water via drinking, recreational, domestic or irrigational activities were unacceptably high, exceeding the acceptable yearly risk of 0.01percent (10-4 infection/person/year) recommended by the USEPA for drinking water. The risks of illness and of death from infection ranged from 6.58×10-5–5.0×10-1 and 6.58×10-9–5.0×10-5 respectively. Data on the physicochemical and bacteriological parameters showed that the Buffalo River water quality was poor, and deteriorated in the plains compared to the upper reaches. These water quality data, the presence of enteric viruses and the QMRA data, that revealed unacceptably high risks of enteric virus infections, and of illness and mortality from the infections, show that the Buffalo River and its dams are contaminated waters that constitute significant public health hazards. Provision of adequate sanitary infrastructure will help prevent source water contamination, and public health education aimed at improving personal, household and community hygiene is imperative. Monitoring enteric viruses in rivers and source water dams is necessary and useful as a risk assessment tool for the exposed population. Future research should consider a comprehensive characterization of the detected viruses. This work is both a significant contribution to the molecular epidemiology of enteric viruses and the first report on molecular detection and quantification of enteric viruses in surface waters in the Eastern Cape. , Thesis (PhD) -- Faculty of Science and Agriculture, 2013
- Full Text:
- Date Issued: 2013-03
Bayesian spatio-temporal zero-inflated mixed models for overdispersion on chronic disease mapping
- Authors: Osuji, Georgeleen O https://orcid.org/0000-0002-8408-3928
- Date: 2021-12
- Subjects: Medical mapping , Bayesian statistical decision theory
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/23644 , vital:58230
- Description: Background: Life expectancy in most developing countries has remarkably increased and decreased in mortality, but under 5 years old mortality has increased due to HIV and Tuberculosis incidence. Many factors have been established to influence the mortality rate among HIV patients and understanding the factors contribution to the risk of under 5-year-old mortality is important for designing appropriate health interventions. Excess zeros usually occur in such HIV mortality count data. Mixed models consisting of count part and zero part are often used to describe the observed excess zero in the data. Poisson models are popular modeling inference, but Negative-Binomial models are more flexible in analyzing count data and dealing with overdispersion. Method: This research proposed to develop two-part hurdle models in analyzing areal zero count data. A spatial Bayesian lognormal-logit hurdle model (BLLHM) with random effects characterizes and cross-spatial dependencies were introduced. The parameter inferences and predictions were evaluated using the Markov Chain Monte Carlo algorithm. The model proposed was applied to HIV-positive under 5-year-old mortality collected from the Eastern Cape Department of Health. Results: Bayesian lognormal-logit hurdle model is selected as the best model fit. It is observed that the total number of HIV patients not on ART-HIVnotTB (0.000612, p <0.000) was positively and statistically significantly associated with the HIV-positive mortality of under 5 years patients. Both CD4 counts were done on newly diagnosed HIV rate (CD4count) and HIV-positive new patients screened for TB rate (HIVTBrate) were negatively and statistically significantly associated with the HIV-positive mortality of under 5 years patients (-0.6294, p = 0.000 and -0.00056, p = 0.0052). However, the covariate HIV positive Tuberculosis Preventive therapy (TPT) uptake rate (HIVandTB) was not statistically significantly associated with the HIV-positive mortality of under 5 years patients (-0.00155, p = 0.5392). Conclusion: The model is flexible to deal with zero-inflated and over-dispersed count data. There is a need to consider the risk of cause-specific under-5-year-old mortality in terms of spatial effects. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
- Full Text:
- Date Issued: 2021-12
Biological activities and mechanisms of action of two ethnobotanically selected South African medicinal plants on some bacteria associated with gastrointestinal infections
- Authors: Olajuyigbe, Olufunmiso Olusola https://orcid.org/0000-0002-7889-0416
- Date: 2012-08
- Subjects: Medicinal plants , Herbs -- Therapeutic use , Gastrointestinal system
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/25439 , vital:64249
- Description: In this study, 36 plant species representing 24 families were found to be commonly used for the treatment of a variety of gastrointestinal disorders in Eastern Cape, South Africa. The family Fabaceae had the highest number of species. Out of these, 47.06percent were used in the treatment of dysentery alone while 46.15percent were used in the treatment of diarrhoea. Acacia mearnsii De Wild and Ziziphus mucronata subsp. mucronata Willd were selected for this research because they are extensively used in folkloric medicine in South Africa and there was lack of scientific reports that documented their biological activities. The phytochemical screening, antioxidant activities, in vitro antimicrobial activities, cytotoxicity, the synergistic potentials and mechanisms of actions of these plants were investigated. The phytochemical screening and the antioxidant activities of the two species showed that the quantity of the phenolic compounds, flavonoids and proanthocyanidins detected differ significantly in the various extracts. Of the aqueous, acetone, ethanolic and methanolic extracts of A. mearnsii, the ethanolic extract had the highest flavonoids while the acetone extract had the highest phenolic contents. The proanthocyanidins were highest in the methanol extract while aqueous extracts had the least phytochemicals. Aqueous extract showed the least ferric reducing power but methanol extract indicated the highest reducing power. The reducing power of the extracts was lower than those obtained from the reference standard such as butylated hydroxytoluene (BHT), rutin and ascorbic acid. 2,2’-azinobis-3-ethylbenzothiazoline-6-sulfonic acid (ABTS) diammonium salt showed that ethanol extract exhibited the highest antioxidant activity at the highest concentration tested. Also, 1,1-diphenyl-2-picrylhydrazyl (DPPH) assay indicated that ethanol extract had the highest radical scavenging activity at the lowest concentration and the activities of all the extracts decreased with increase in their concentrations. In Z. mucronata subsp. mucronata, the phenolics were significantly higher than the flavonoids and proanthocyanidin contents in all the extracts investigated. The ethanol extract had the highest antioxidant activity, followed by the acetone extract while the aqueous extract was the least active. Reacting with ABTS, the 50percent inhibitory concentrations (IC50) were (0.0429 ± 0.04 mg/ml) for aqueous, (0.0317 ± 0.04 mg/ml) for acetone and (0.0306 ± 0.04 mg/ml) for ethanol extracts while they inhibited DPPH radical with 50percent inhibitory concentration (IC50) values of 0.0646 ± 0.02 mg/ml (aqueous), 0.0482 ± 0.02 mg/ml (acetone) and 0.0422 ± 0.03 mg/ml (ethanol). The investigation showed that a positive linear correlation existed between the total phenolic content and antioxidant activity of the extracts and that these plants have strong antioxidant property and free radical scavenging capability. The in vitro antibacterial activities of Acacia mearnsii and Z. mucronata subsp. mucronata showed that their minimum inhibitory concentrations ranged between 0.039 mg/ml and 1.25 mg/ml. With the exception of acetone extract of A. mearnsii having MICs greater than 1.0 mg/ml for Enterococcus faecalis ATCC 29212 and Bacillus subtilis KZN, all other isolates had MICs less than 0.7 mg/ml. In all the bacteria treated with Z. mucronata subsp. mucronata extracts, Enterobacter cloacae ATCC 13047 had MIC greater than 1 mg/ml in methanol extract, Enterococcus faecalis ATCC 29212 and Staphylococcus aureus ATCC 6538 had MICs greater than 1 mg/ml in acetone extract while all other isolates were highly susceptible to the different extracts of Z. mucronata subsp. mucronata and had MICs less than 0.7 mg/ml. While aqueous extract was as active as the alcoholic extracts in A. mearnsii, that of Z. mucronata had no effect. The ethanol extracts exhibited the highest degree of antibacterial activity in both plants. This study, also, showed that the antifungal activity of A. mearnsii ranging 0.3125 – 5.0 mg/ml was higher than those of the different extracts of Z. mucronata subsp. mucronata ranging 1.25 – 10.0 mg/ml. It is evident from the results of the brine shrimp lethality assay that the crude extracts of A. mearnsii with the LC50 equaled 112.36 µg/ml and having the highest levels of toxicity (100percent) death at 500 μg/ml was non toxic (LC50 > 100 μg/ml) while the LC50 for Z. mucronata subsp. mucronata equaled 90.27 µg/ml indicated a low level of toxicity. The effects of combining the crude extracts of these plants with eight antibiotics were investigated by means of checkerboard and agar diffusion methods. On using the methanol extract of A. mearnsii, the agar diffusion assay showed that extract-kanamycin combination had zones of inhibition ≥ 20 ± 1.0 mm in all the bacteria tested (100percent), followed by extract chloramphenicol (90percent) > extract-ciprofloxacin = extract-tetracycline (70percent) > extract amoxicillin (60percent) > extract-nalidixic acid (50percent) > extract-erythromycin (40percent) > extract metronidazole (20percent). The checkerboard showed synergistic interaction (61.25percent), additivity/indifference (23.75percent) and antagonistic (15percent) effects. I, therefore, concluded that the antibacterial potentials of the antibiotics were improved and combining natural products with antibiotic could be a potential source of resistance-modifying agents useful against multi-drug resistant bacteria. The influences of these extracts on the ultrastructures, elemental components, protein and lipid leakages of five different bacteria were determined as the possible mechanisms of action of the extracts investigated. The scanning electron microscopy indicated varied ultrastructural changes in the morphology of bacterial cells treated with the extracts. The X-ray microanalysis showed significant differences between the elemental contents of extract-treated and untreated bacteria while lipids and proteins were leaked to a great extent from the extract-treated bacterial strains in comparison with the untreated ones. The possible mechanisms of action of the extracts may include inhibition of a significant step in peptidoglycan assembly, inhibition of metabolic processes, disruption of cell wall and cell membranes resulting in the efflux of lipid and protein in all the bacteria tested. The possible mechanism of action involved in the lipid and protein leakages in the bacterial cells could be attributed to lipid peroxidation and protein oxidation owing to the antioxidant activities of the extracts that were active beyond the protective levels. I concluded that the morphological changes and the observed leakages showed rapid killing, significant membrane depolarization resulting in leakages and efflux of disintegrated cellular materials. In general, this study has justified the ethnotherapeutic importance of A. mearnsii and Z. mucronata subsp. mucronata in the treatment of microbial infections by indicating the possible mechanisms of action of the crude extracts on the tested bacteria. , Thesis (PhD) -- Faculty of Science and Agriculture, 2012
- Full Text:
- Date Issued: 2012-08
Characterisation of communal rangeland degradation and evaluation of vegetation restoration techniques in the Eastern Cape, South Africa
- Authors: Lesoli, 'Mota Samuel
- Date: 2011-12
- Subjects: Communal rangelands , Grazing
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/24316 , vital:62624
- Description: This study assessed the social factors influencing poor communal rangeland management, which are assumed to result in rangeland degradation. This was followed by, examination of biophysical characteristics of rangeland degradation in communal areas. To relate social factors featuring in communal rangeland management with rangeland degradation, biophysical factors influencing livestock grazing distribution patterns were studied. To establish the solution to communal rangeland degradation, rangeland restoration techniques were evaluated. The study was conducted at Amakhuze Tribal Authority (ATA) (S32o 38´, E26o56, 763 - 1500 m.a.s.l) composed of six villages and Phandulwazi Agricultural High School (S32o 39´ and E26o 55´, 747 m.a.s.l). Focus group discussions were conducted in six villages and questionnaire surveys in four randomly selected villages to assess social factors influencing communal rangeland degradation. Communal rangeland degradation biophysical characteristics were assessed. Biophysical factors affecting livestock grazing distribution pattern were examined through direct field observations for 12 months. Restoration techniques were evaluated on 26 plots. The social factors influencing communal rangeland management include lack of skills on rangeland management for farmers, lack of individual/community obligation on grazing management, lack of effective policies and/or poor enforcement accompanied by lack of effective institutions governing rangeland utilisation and management. Communal rangelands were more (χ 2 = 2612.07, df = 26, p < 0.01) degraded compared with controlled grazing areas. Within the communal rangelands, land degradation was higher at the low-lying areas, compared to foothills, midslopes, and mountaintop (crest). Rangeland degradation in communal areas was characterised by poor forage productivity and poor vegetation cover , higher soil unconfined compressive strength (UCS) (4.5 kg/cm2) with low hydraulic conductivity (5.21 x 10-3) and physical soil loss characteristics such presence of terracettes, pedestals, rills and gullies. Grazing distribution was higher at valley bottom (r2 = 0.404, p < 0.001), low altitude (r2 = -0.007, p < 0.001), closer to water points (r2 = -0.001, p < 0.001), and on grassland vegetation (r2 = 0.620, p < 0.001). Introduction of seedlings with microcatchment combined with brushpack promoted (p < 0.05) higher number of tillers (13), leaves (42) and reduced seedling mortality (10.4percent). T. triandra produced higher (p < 0.05) number of tillers (12) and leaves (39) but low number of inflorescence (0.7) with higher mortality rates (25.3percent) compared to P. dilatatum. Where plant propagules were introduced as seeds, use of microcatchment promoted higher seed germination (F = 38.84, p < 0.05) and maintained higher plant density (F = 37.43, p < 0.05). E. curvula seeds attained higher germination rate and maintained higher plant density compared to D. eriantha and P. Maximum. Use of microcatchment, brushpack, and water spreading system promoted soil water retention. It is important that any interventions aimed at improving communal rangeland management, controlling rangeland degradation in the communal areas, or restoring degraded rangelands to consider the social factors driving rangeland management and biophysical factors influencing grazing distribution pattern. Rangeland restoration techniques for communal areas should be centred on their ability to collect and retain water to promote restoration performance of introduced plant propagules. , Thesis (PhD) -- Faculty of Science and Agriculture, 2011
- Full Text:
- Date Issued: 2011-12
Characterization of bioflocculants produced by consortia of three marine bacteria belonging to the genera bacillus and cobetia previously isolated from the bottom sediment of Algoa Bay in the Eastern Cape Province of South Africa
- Authors: Ugbenyen, Anthony Moses https://orcid.org/0000-0002-1381-3428
- Date: 2013
- Subjects: Water -- Purification -- Flocculation , Water quality management , Flocculation
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/24454 , vital:62804
- Description: The bioflocculant-producing potentials of three marine bacteria isolated from the sediment samples of Algoa Bay in the Eastern Cape Province of South Africa were assessed. Analysis of the partial nucleotide sequence of the 16S rDNA of the bacteria revealed 99 percent, 99 percent, and 98 percent similarity to Cobetia sp. L222, Bacillus sp. A-5A, and Bacillus sp. HXG-C1 respectively and the sequence was deposited in GenBank as Cobetia sp. OAUIFE, Bacillus sp. MAYA and Bacillus sp. Gilbert (accession number JF799092, JF799093, and HQ537128 respectively). Cultivation condition studies for Cobetia sp. OAUIFE revealed that bioflocculant production was optimal with an inoculum size of 2 percent (v/v), initial pH of 6.0, Mn2+ as the metal ion, and glucose as the carbon source. Metal ions, including Na+, K+, Li+, Ca2+and Mg2+ stimulated bioflocculant production resulting in flocculating activity of above 90 percent. This crude bioflocculant is thermally stable, with about 78 percent of its flocculating activity remaining after heating at 100 oC for 25 min. Analysis of the purified bioflocculant revealed it to be an acidic extracellular polysaccharide. FTIR analysis revealed the presence of methoxyl, hydroxyl, and carboxyl - groups in the compound bioflocculant and SEM micrograph of the bioflocculant revealed a crystal-linear structure. On the other hand, bioflocculant production by Bacillus sp. MAYA was optimal when glucose (95.6 percent flocculating activity) and ammonium nitrate (83.3 percent flocculating activity) were used as carbon and nitrogen sources respectively; inoculum size was 2 percent (v/v); initial pH 6; and Ca2+ as coagulant aid. Chemical analysis of the purified bioflocculant shows that it is composed of uronic acid, neutral sugar and protein. FTIR analysis also revealed the presence of methoxyl, hydroxyl, carboxyl and amino- groups in this bioflocculant. The bioflocculant is thermostable with about 65.6 percent residual flocculating activity retained after heating the bioflocculant at 100 oC for 25 min. However bioflocculant production by Bacillus sp. Gilbert was optimal when sodium carbonate (95.2 percent flocculating activity) and potassium nitrate (76.6 percent flocculating activity) were used as carbon and nitrogen sources respectively; inoculum size was 3 percent (v/v); initial pH 9; and Al3+ as cation. The crude bioflocculant retained 44.2 percent residual flocculating activity after heating at 100 oC for 15 min. FTIR analysis reveals the presence of hydroxyl, carboxyl and methylene - groups in the compound bioflocculant. SEM micrograph of the bioflocculant revealed an amorphous compound. The consortia of these bacteria strains also produced bioflocculants with high flocculating activities which were highly efficient in removing turbidity and chemical oxygen demand (COD) from brewery wastewater, diary wastewater and river water. The bioflocculants from the consortia seemed better than traditional flocculants such as alum . The characteristics of the bioflocculant produced by the consortium of Cobetia sp. OAUIFE and Bacillus sp. MAYA showed that this extracellular bioflocculant, composed of 66percent uronic acid and 31percent protein and an optimum flocculation (90 percent) of kaolin suspension, when the dosage concentration was 0.8 mg/ml, under weak alkaline pH of 8, and Ca2+ as a coagulant aid. The bioflocculant is thermally stable, with a high residual flocculating activity of 86.7 percent, 89.3 percent and 87.0 percent after heating at 50 oC, 80 oC and 100 oC for 25 min respectively. The FTIR analysis of the bioflocculant indicated the presence of hydroxyl, amino, carbonyl and carboxyl functional groups. Scanning electron microscopy (SEM) image revealed a crystal-linear spongy-like bioflocculant structure and EDX analysis of the purified bioflocculant showed that the elemental composition in mass proportion of C,N,O,S and P was 6.67:6.23:37.55:0.38:4.42 (percent w/w). However, the characteristics of the bioflocculant produced by the consortium of Cobetia sp OAUIFE and Bacillus sp. Gilbert showed an optimum flocculation (90 percent) of kaolin suspension when the dosage concentration was 0.2 mg/ml, under neutral pH of 7, and Ca2+ as a coagulant aid. The FTIR analysis of the bioflocculant indicated the presence of hydroxyl and carbonyl functional groups. Scanning electron microscopy (SEM) image revealed an amorphous morphology. On the other hand the bioflocculant produced by the consortium of Bacillus sp. MAYA and Bacillus sp. Gilbert showed similar characteristic with the bioflocculant from the consortium of Cobetia sp. OAUIFE and Bacillus sp. Gilbert except for Al3+ being the preferred coagulant aid. The characteristics of the bioflocculant produced by the consortium of Cobetia sp. OAUIFE, Bacillus sp. MAYA and Bacillus sp. Gilbert showed an optimum flocculation (87 percent) of kaolin suspension when the dosage concentration was 1.0 mg/ml. Under strong alkaline pH of 12, flocculating activity reached (95 percent) when Al3+ was the coagulant aid. The FTIR analysis of the bioflocculant indicated the presence of hydroxyl, amino, carbonyl and carboxyl and phosphoryl functional groups. Scanning electron microscopy (SEM) image revealed a flaky amorphous morphological structure. Due to the excellent COD and turbidity removal efficiencies of the bioflocculants produced by the consortia, these make those attractive candidates for use in water and wastewater treatment. , Thesis (PhD) -- Faculty of Science and Agriculture, 2013
- Full Text:
- Date Issued: 2013
Coastal urban climate change adaptation and disaster risk reduction assessment: the case of East London city, South Africa
- Authors: Busayo, Emmanuel Tolulope https://orcid.org/ 0000-0002-9274-2145
- Date: 2021-05
- Subjects: Climate change mitigation , Climatic changes , Emergency management
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/20938 , vital:46756
- Description: The increasing incidences of climate change and its registered negative effects have disturbed the entire world, with the coastal areas being the worst hit. Given the fact that coastal areas are becoming centres of global population settlement. An attempt to explore climate change-related disasters and risks is an important aspect in building communities' adaptation and resilience, especially for the most vulnerable global south. Consequently, climate change adaptation (CCA) and disaster risk reduction (DRR) have become fundamentally linked to offering sustainable solutions to address climate change and related disaster risk problems witnessed frequently in recent years. However, the assessment of synergy between CCA and DRR for coastal areas remains fragmented, vague and limited, especially for Sub-Saharan Africa and thus the need for exploration. Furthermore, the urban populace and planning stakeholders are grappling with the challenges of seeking ways to integrate adaptation measures into human livelihoods and planning systems. Also, considering complex issues inhibiting sustainable planning, for example, poor communication of climate risks affecting coastal areas, little records of hazards disclosure and disaster history, inundation and/or sea level rise etc warranted further investigation. Accordingly, the synergies between CCA and DRR in addressing various climate change-related disaster risks, especially for the coastal areas and cities was explored in this study. To this end, given the complexity of CCA and DRR, trio-theories were adopted, which included Resilience Theory (RT), Social Vulnerability Theory (SVT) and Protective Motivation Theory (PMT) as the study’s theoretical underpinnings using East London Coastal City as a case study. Consequently, a multi-method approach was employed using a review of literature, bibliometric analysis, field survey, geographic information system (GIS), and remote sensing. The first objective reveals that there is a need for convergence and harmonisation of CCA and DRR policy, programme, and practice to improve sustainable planning outcomes. Accordingly, the study proposed the adoption of a problem analysis model (PAM) for place function sustainability and local or community level resilience building. The second objective revealed that the Sendai framework for disaster risk reduction has not been fully operationalised at the local and global scales. However, in South Africa, there are efforts to streamline DRR across manifold sectors through the Integrated Urban Development Framework (IUDF). Therefore, disaster risk managers and climate change adaptation stakeholders at the local level need to embrace the position of the SFDRR to possibly offer sound and sustainable results to the most vulnerable. In addition, a bibliometric analysis on climate change adaptation from 1996 – 2019 highlights the need for more African countries' engagement and cross-collaboration between developing and developed countries in CCA research to advance sustainable solutions and improve resilience. The third objective revealed the need for more awareness, flexibility, and adaptability among stakeholders at various levels as fundamental ingredients for CCA and DRR sustainable planning outcomes. The fourth objective highlighted that floods were recorded as the most predominant hydro-meteorological hazard (n=118, 81.9percent) in the East London, coastal city. Finally, the fifth objective portrayed that many communities, populace, buildings (types), and areas are exposed to flood disaster risks, especially, communities such as Nahoon Park Valley, Sunrise on Sea, Beacon Bay, Buffalo, Gonubie, and East London are among the most vulnerable. The study recommends that early action and warning systems should be adopted, and allocation proper building codes to boost awareness to reduce the potential flood disaster risks. Moreover, the study reveals the significance of local flood disaster risk mapping in advancing CCA and DRR to ensure the implementation of coherent spatial planning for sustainable planning outcomes. The overall lessons learnt from this study are vital in contributing to the attainment of the sustainable development goals (SDGs) such as goal 11: sustainable cities and communities, and goal 13: climate action, including the seven targets and four priorities for action of the Sendai framework at a local level. The study results are deemed critical in guiding city planners, decision-makers, disaster risk managers, local communities among others towards the development of a more resilient coastal community. In general, the study calls for the integration of CCA and DRR initiatives to be premised on PAM for sustainable planning outcomes to achieve sustainable development goals and reduction of fatalities from climate-related disasters. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
- Full Text:
- Date Issued: 2021-05
Comparative performance of 3-kWp ranges Solar Photovoltaic Systems under varying meteorological conditions in Alice, Eastern Cape Province, South Africa
- Authors: Apeh, Oliver Okechukwu https://orcid.org/0000-0003-4076-0613
- Date: 2021-08
- Subjects: Photovoltaic power systems , Solar energy
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/21567 , vital:48888
- Description: PVsystem has recently emerged in South Africa as a way to curb the country’s persistent shortage of electricity. A wide effort for the past few decades have targeted at study, testing and demonstration of PV power systems which was established all over the country as an appropriate measure to tackle transportation, agriculture, industry, commercial as well as domestic activities. In view of these drives, both off-grid and grid-connected PV systems are being applied. However, operating a building with an off-grid system is one of the means to providing the possibility of energy access to places far away from the national grid. As an off-grid choice, 50 W SHS is being distributed to customers in distant rustic parts of the country where grid option is difficult to access. But the SHS of the stated capacity can barely generate 0.3 to 0.4 kWh of electric energy per day, even at the optimal solar radiations. In view of this, more efforts are directed at expanding the off-grid systems to accommodate large rural households in South Africa. This thesis is dedicated to a study on the various configurations and components of PV power plant as a way to enhance electricity generations in South Africa. To this effect, different power plants were considered at SolarWatt park, University of Fort Hare with the aim to conduct a comparative analysis of the charge controllers with respect to the charge and discharge rates of their respective batteries. The grid-connected PV power generation was classified into hybrid PV and grid-assisted PV, while off-grid is a BIPV. These power plants generations were installed for the purpose of research level with a total capacity of 11.4 kW. The off-grid system is made up of HIT modules, FlexMax80 charge controller, Victron energy inverter and M-Molar battery bank. The hybrid and grid-assisted systems each consist of 15 polycrystalline modules and Microcare charge controllers. In addition, hybrid comprises SMA Sunny Island inverter and Trojan battery bank whereas grid-assisted consist of Microcare inverter and Hoppercke battery bank. The first part of the experimental work was monitored, and the meteorological parameters which are ambient temperature, solar radiation, relative humidity and wind speed, were measured and evaluated while electrical parameters includes PV current and voltage, MPPT current and voltage, battery current and voltage and inverter current and voltage were also measured and evaluated in the second part of the experiment. This lasted for a period of four years, starting from 1st January 2017 to 31st December 2020. Similarly, the second aspect was to monitor the electrical performance of the three systems and was performed for a period of six months, starting from January to June 2019. During the second experiment, hybrid and grid-assisted systems were reconfigured to function as off-grid systems. Moreover, a detailed data acquisition system designed to measure and record both meteorological and electrical parameters affecting the performance of the systems. The electrical parameters include PV current and voltage, MPPT current, battery current and voltage and inverter current and voltage. Other parameters in the measurements are; inverter efficiency, active and apparent power, while meteorological parameters include; solar irradiance, ambient temperature, relative humidity, wind speed and direction. The meteorological results show that the maximum and minimum mean amount of global solar radiation was 7.34 kWh/m2/day in December and 3.03 kWh/m2/day in June, respectively, while the average radiation and temperature for the typical year were 4.98 kWh/m2/day and 16.88 oC respectively. The solar radiations obtained are within the range in major places in South Africa. Similarly, an average wind speed of 2.5 m/s is experienced in Alice in a year and average solar radiation of 606.06 W/m2 in summer and 346.17 W/m2 in winter. The three lead-acid battery systems monitored under the electrical aspect are M-Molar, Trojan and Hoppecke battery systems. It was established that the charging current decreases gradually from 27.7 to 18.5 A for the M-Molar while Hoppecke and Trojan deceased respectively from 15 to 10 A and 23 to 13 A at the end of each phase by charging it at the maximum power point of the PV array. It was equally found that the M-Molar battery current has the highest rate of charging and quickest rate of discharging in comparison to the other two batteries. Finally, from the results gotten from this research, we may propose that the solar PV system contributes significantly to the satisfaction of the needed electricity in South Africa. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
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- Date Issued: 2021-08
Compartmentalization of mineral elements, nutritional factors, biological potentials and phytochemical profiles in the fruits of Musa sinensis L.(Banana) and Musa paradisiaca L.(Plantain): A comparison among soft flesh, peel and boiled peel extract
- Authors: Oyeyinka, Barnabas Oluwatomide https://orcid.org/0000-0003-1191-9365
- Date: 2021-09
- Subjects: Bananas , Plantain banana
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/23655 , vital:58274
- Description: Fruits are key contributors to human nutrition and health. However, banana and plantain are typical examples of fruits that have nutritionally under-utilized peel by-products. This study was thus carried out to investigate the compartmental distribution (soft flesh, peel, and boiled peel extract) of mineral elements, nutritional factors, biological potentials, and phytochemical profiles in M. sinensis and M. paradisiaca fruits (ripening stage 4-5), with focus on the peels. Proximal and and antinutritive analyses were done with standard methods of the Association of Official Analytical Chemists (AOAC), while mineral element composition in the fruit components was analyzed with the inductively coupled plasma optical emission spectroscopy (ICP-OES). The pharmacological potential of M. sinensis and M. paradisiaca fruit components was investigated spectrophotometrically by evaluating the polyphenolic constituents (total phenol, proanthocyanidin, flavonoid) and in vitro radical scavenging activities of the aqueous, acetone and ethanol extracts, using DPPH, ABTS, and FRAP assay models. The correlational evaluation of the polyphenolics and antioxidant activity in the components of both fruits using Pearson’s correlational coefficient (r). The proximal assays revealed that moisture content, fiber content, and carbohydratecontent were substantially present in the flesh and peel of M. sinensis and M. paradisiaca, while lipid content was low. The antinutritive results revealed safe levels of alkaloid, oxalate, phytate, and saponin factors in the flesh and peel by-products. Mineral analysis results indicated substantial levels of the macroelements K, Mg, Ca, and P in the peels. Other results revealed that acetone extracts had the highest phenolic, proanthocyanidin and flavonoid constituents respectively, across the soft flesh components ofM. sinensis (119.05 ± 5.80 mgGAE/g; 337.48 ± 13.16 mgCE/g; 602.64 ± 3.65 mgQE/g), M. paradisiaca (114.80 ± 1.49 mgGAE/g; 436.09 ± 36.44 mgCE/g; 777.35 ± 150.95mgQE/g) and the peel component of M. paradisiaca (136.87 ± 5.69 mgGAE/g; 530.06 ± 53.51 mgCE/g; 750.87 ± 55.61 mgQE/g), with an exception of the phenolic content of M. sinensis peel, where it was highest in the ethanol extract (157.19 ± 4.76 mgGAE/g). The ABTS (0.03 mg/mL) and DPPH (0.03 mg/mL) activities were at their highest in the boiled peel extracts of M. sinensis and M. paradisiaca, while ferric reducing power was highest in ethanol extracts across M. sinensis soft flesh, peel, and M. paradisiaca flesh. Acetone extract of M. paradisiaca peel had the highest ferric reducing capacity at peak concentration (0.1 mg/mL). Correlational analysis revealed a negative correlation between respective phenolic, proanthocyanidin, and flavonoid content and the IC50DPPH antioxidant capacity in M. sinensis flesh, M. sinensis peel and M. paradisiaca flesh. Conversely, there was positive correlation between IC50 DPPH with proanthocyanidin and flavonoid in M. paradisiaca peel. Negative correlation was detected between the phenolic, proanthocyanidin and flavonoid contents and IC50ABTS in M. sinensis flesh. Positive correlation was observed between respective phenolic, proanthocyanidin and flavonoid contentwith IC50 ABTS in M. sinensis peel, M. paradisiaca flesh and M. paradisiaca peel. There was negative correlation between the respective phenolic, proanthocyanidin and flavonoid contents and IC50 FRAP in the flesh of M. sinensis, while positive correlation was observed in M. sinensis peel. M. paradisiaca flesh on the other hand, showed positive correlation between the IC50 FRAP and the respective phytochemical contents. However, the peel, there was negative correlation. The correlational evaluation in this study revealed general positive and negative correlational patterns, which implies that no polyphenolic constituent contributed exclusively to antioxidant activity, but rather in combination. Ultrastructure and elemental spectra of M. sinensis and M. paradisiaca exocarps were analysed with electron microscopy (SEM)and energy dispersive x-ray (EDX). Microstructures such as interlocked, polyhedral epidermal cells, ellipsoid-shaped stomata, guard cells, intercellular space, anticlinal-patterned walls, and subsidiary cells were observed. The elemental spectra revealed the presence of elements such as potassium, iron, carbon, oxygen, silicon, and gold, with consistently high to relatively high carbon and oxygen peaks in M. sinensis and M. paradisiaca exocarps. The relative similarity observed in the constituents of a number of the elemental spectra in M. sinensis and M. paradisiaca peels, reflects some degree of relatedness. These outcomes indicate that banana and plantain peel and boiled peel extracts are nutritive, medicinal and potential nutraceuticals, with food preservative, shelf-life and quality enhancement potentials. The instrumentation in this study also have potential relevance in industrial food product analysis. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
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- Date Issued: 2021-09
Cultivation, nutritional and pharmacological evaluation of Celosia argentea (L) Kuntze: an endangered wild vegetable in the Eastern Cape Province of South Africa
- Authors: Adegbaju, Oluwafunmilayo Dorcas
- Date: 2019-09
- Subjects: Celosia , Edible greens
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19806 , vital:43250
- Description: Green leafy vegetables are important in human nutrition, but their cultivation is limited to a few staple ones. These vegetables possess high nutritious and therapeutic properties that could help in achieving nutritional security and alleviating the burden of some diseases. A typical example is Celosia argentea, which in South Africa, is little known and grossly under-utilized despite its numerous nutritional and pharmacological values. The present study investigated the cultivation, nutritional and pharmacological potentials of C. argentea at three stages of maturity of two trials. Evaluation of cultivation in the greenhouse towards possible domestication of C. argentea included seed viability test, seed germination under varying temperatures (5, 10, 15, 20 25 30, 35, 40°C), light conditions (continuous light, continuous darkness, alternating light and dark (12h light/12 dark photoperiod) and sowing depths (0, 1, 2, 3, 4 and 5cm). The nutritional evaluation assessed the proximal, mineral, vitamins and antinutrient content of the plant; while pharmacological potentials of C. argentea were evaluated by investigating the ultramorphology, phytochemical content, anti-oxidant, antimicrobial, toxicity and cell-based anti-inflammatory properties of the plant at different stages of growth. Germination experiment revealed that optimum seed germination requirements for C. argentea were 25°C, alternating light and dark regime and a sowing depth of 1cm. Microrphological assessment of C. argentea revealed that the leaves were amphistomatic; with the abaxial surface having higher stomata density. Characteristic, distinguishing protuberances were observed at the polar ends of the stomata on the adaxial surface of the plant epidermis, and the major elements on the foliar epidermis were beryllium, carbon, oxygen and potassium; while pigmentation and colouration, showing localization of bioactive compounds were mostly at the site where trichomes were abundant. Growth parameters and yield potential (plant height, stem girth, leaf area, number of leaves, number of branches, number of days to flowering, number of flowers as well as dry and fresh weight) of C. argentea showed that for agricultural practices on the field, increase in growth parameters should be expected around 4-5 weeks after transplanting while higher yield should be expected around 7-9 weeks after transplanting. The results encouraged cultivation during summer or late spring for best farm management. Proximal, mineral, vitamins and anti-nutrients content of C. argentea at three different maturity stages of two trials were performed using AOAC, ALASA and inductively coupled plasma-optical emission spectrometer techniques. Results revealed that the pre-flowering stage of growth had the highest ash (28.15± 0.10 percent) and crude protein (25.80 ± 0.20 percent) contents. While post-flowering stage had the highest carbohydrate (28.51± 0.20 percent and 36.16± 0.22 percent), crude fibre (33.41± 0.87 percent) and energy (435.28± 27.6 percent) with low fat and moisture (8.43± 0.15 percent and 6.35±0.09 percent) contents respectively; while no marked demarcation in most mineral contents in all the growth stages was observed. Zinc was highest at the flowering stage of growth, while vitamin contents decreased as the plant approached maturation. Antinutrients content of the plant was not dependent on growth stage. Total phenols, flavonoids and proanthocyanidin content of C. argentea were evaluated colourimetrically, while the antioxidant potency of the aqueous, acetone and methanolic extracts was measured using 2,2 diphenyl-1-picrylhydrazyl (DPPH), 2,2′-azino-bis (3-ethylbenzthiazoline-6-sulfonic acid) (ABTS), Ferric reducing antioxidant power (FRAP) and total antioxidant capacity (TAC) models. All the solvent extracts of the flowering stage had the highest total phenolic (80.75±4.21GAE/g), flavonoids (946.19±7.87QE/mg) and proanthocyanidin contents (100.90±1.29 CE/g); with the acetone extracts showing significantly higher phytochemical content. The flowering stage exhibited the best radical inhibitory activity, with the methanol extract having the highest scavenging power for ABTS and DPPH radicals, while acetone extract showed the highest inhibition against FRAP and highest total antioxidant capacity. The antimicrobial potential of the aqueous acetone and methanolic extracts of C. argentea evaluated using agar dilution method against six bacteria (Klebsiella pneumonia, Pseudomonas aeruginosa, Escherichia coli, Staphylococcus aureus, Bacillus subtilis and Bacillus cereus) and four fungal strains (Candida glabarata, Candida albicans and Penicillium aurantiogriseum and Penicillium chrysogenum) showed that Streptococcus pyrogenes and P. aeruginosa were susceptible to the methanol extracts of all the growing phases of both trials at 10 mg/mL; while Klebsiella pneumoniae was susceptible at 10 mg/mL to only the methanol post-flowering extracts of both trials. C. albicans and P. aurantiogriseum were highly susceptible to all the extracts. Possible toxicity evaluated using brine shrimp lethality assay and calculation of LC50 against brine shrimp nauplii revealed that C. argentea was not toxic at any stage of maturity at all concentrations evaluated. Anti-inflammatory activities and cytotoxicity of C. argentea extracts evaluated using RAW 264.7 macrophages and 3T3-L1 cell lines revealed that the acetone extract of the flowering stage had moderate anti-inflammatory activity with no significant toxicity against activated macrophages. Findings from this study indicate that C. argentea is a safe functional leafy vegetable of high nutritional and pharmacological importance which can easily be cultivated and domesticated in South Africa. This could significantly alleviate the burden of micronutrient deficiencies among pre-school children in rural communities. , Thesis (PhD) (Botany) -- University of Fort Hare, 2019
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- Date Issued: 2019-09
Determination of acaricide resistance profiles, and geographic range of boophilid Rhipicephalus tick spp. (Acari: Ixodidae), and sero-status of tick-borne pathogens on communal cattle in the north-eastern regions of the Eastern Cape Province, South Africa
- Authors: Yawa, Mandla https://orcid.org/0000-0002-2402-298X
- Date: 2021-09
- Subjects: Cattle -- Diseases , Ticks as carriers of disease , Ticks
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/21590 , vital:49356
- Description: Cattle industry improves livelihoods for many developing farmers in South Africa, however, ticks and tick-borne diseases (TBDs) pose a detriment impact on cattle success; this is due to their resistance to acaricide application. Thus, this study was conducted to determine the extent of acaricide resistance, serostatus of tick-borne pathogens, and geographic range of boophilid ticks in communal grazing cattle in the north-eastern regions of the Eastern Cape Province (ECP), South Africa. A total of 160 structured questionnaires were prepared and randomly administered to cattle farmers to investigate their knowledge, attitudes, and practice on ticks and TBDs affecting cattle, tick control methods used, and their knowledge of acaricide resistance. Engorged visible cattle ticks were collected seasonally from 10 randomly selected cattle from the community cattle herds during dipping days between October 2018 and September 2019, and stored into the labelled test tubes containing 70 percent ethanol. For TBDs determination, a total of 240 cattle from Elundini and Senqu Municipalities were seasonally used to investigate the prevalence of ticks and TBDs, packed cell volume (PCV), and body condition scores (BCS). Shaw Larval Immersion Test (SLIT) method was used to determine the resistance of Rhipicephalus decoloratus larvae to various acaricides such as amidines, organophosphate, and synthetic pyrethroids. This study indicates that approximately 59 percent of the interviewed cattle farmers had no knowledge of the effect of TBDs affecting cattle production, and 78 percent of respondents considered ticks are the major challenge to the success of their cattle farming. Pour-on (61 percent) was the most commonly used acaricidal treatment system with fortnightly (40 percent and 31percent) treatment frequencies during the summer and winter seasons respectively. Synthetic pyrethroids (73 percent) were the most used acaricide compounds to control ticks. Moreover, approximately 85 percent of respondents perceived that they do not practice acaricide rotation, and 88 percent of the respondents had no knowledge of acaricide resistance. Interestingly, the current study record Rhipicephalus microplus for the first time at Elundini, Senqu, and Walter Sisulu. Based on the morphological traits, a total of 6176 ticks belonging to two boophilid tick species of Rhipicephalus were identified: R. decoloratus (98 percent) and R. microplus (2 percent). Rhipicephalus decoloratus was significantly higher (P<0.05) in Elundini during the hot-dry (3.37±0.121) and hot-wet (3.35±0.121) seasons compared to other localit ies. In Senqu, R. microplus had high counts (P<0.05) during the post-rainy season (1.06±0.027) compared to other localities. From this present study, it was observed that Ehrlichia ruminantium was the most prevalent at Elundini (16 percent) and (14 percent) during post-rainy and hot-dry seasons respectively and 15 percent at Senqu during the post-rainy season. Babesia bigemina was more frequent at Elundini (18 percent) and Senqu (16 percent) during the post-rainy season and hot-wet season, respectively. Cattle BCS were significantly negatively correlated with E. ruminantium (P<0.01; r = -0.203), B. bovis (P<0.01; r = -0.125), and A. marginale (P < 0.01; r = -0.122). On the other hand, PCV was significantly negatively correlated with B. bigemina (P<0.01; r =-0.138). E. ruminantium was strongly positively correlated with Amblyomma hebraeum (P<0.05; r = 0.112), while B. bovis (P<0.05; r = 0.134) and B. bigemina (P<0.05; r = 0.188) were strong positively correlated with Rhipicephalus microplus infestation and B. bigemina (P<0.05; r = 0.077) with Rhipicephalus decoloratus. During acaricide resistance testing, Shaw Larvae Immersion Testing (SLIT) was only performed on R. decoloratus larvae as engorged R. microplus ticks could not meet the required sample size for resistance testing. The current study found that the majority of the tick were susceptible at exposure to differe nt acaricide field concentrations of amidines (49 percent at 250ppm), organophosphates (33 percent and 47 percent at 300ppm and 500ppm, respectively), and synthetic pyrethroids (44 percent and 23 percent at 150ppm and 300ppm, respectively). In conclusion, less knowledge of cattle farmers on the threat pose by ticks on their cattle production results in the spatio-temporal spread of boophilid tick from region to region and from season to season thus increases incidence and risk for tick resistance. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
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- Date Issued: 2021-09
Development & evaluation of modified lignocellulose-clinoptilolite composites for water treatment
- Authors: Vala, Mavula Kikwe Remy
- Date: 2012-12
- Subjects: Lignocellulose , Lignocellulose -- Biotechnology
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/24521 , vital:63051
- Description: Municipalities, mining, textile and many other industries release wastewater into water bodies. Thus, the entire ecosystem (biota and abiota) including drinking water is affected by polluted effluents. The growing environmental concern over water pollution (due to inorganic and persistent organic compounds) attracts a significant amount of research in the removal of pollutants from water. In this study, lignocellulose and clinoptilolite were modified for the preparation of composites, with high adsorption properties, suitable for the removal of pollutants. Grass (Kikuyu grass) material was first treated with boiling water in order to remove soluble compounds and then with sulfuric acid in order to free functional groups within lignocellulose. The lignocellulose obtained was then chemically modified with three different siloxanes (3-aminopropyl-terminated poly (di)methylsiloxanes) of different molecular weights. For clinoptilolite, impurities were removed by reflux in hydrochloric acid before chemical modification with siloxanes. Grafting of siloxanes onto lignocellulose and clinoptilolite as well as the preparation of composites were successfully achieved by means of dibutyltin dilaurate (catalyst) after reflux under nitrogen. The modified materials were characterized by FT-IR, XRD, SEM and TGA and results confirmed successful modification of the materials. Solid state 29Si and 13C NMR were used to investigate the nature of the composite prepared with siloxane NH40D (CNH40D). The investigation revealed a possible bond between the modified lignocellulose and the modified clinoptilolite in the composite. The sorptive and/or ion exchange properties of the materials prepared for the removal of pollutants from water were then investigated. Phenol red, used motor (engine) oil and cyanide were used (with regard to textile, oil spill and gold mining effluents respectively) to simulate water pollution in the laboratory. It was found that adsorption properties of lignocellulose were significantly increased after sulfuric acid treatment, suggesting the availability of lignocellulose functional groups as adsorption sites. When further modified with siloxanes, lignocellulose showed less efficiency in adsorbing phenol red. The general mechanism of phenol red uptake onto lignocellulose and clinoptilolite modified with siloxane or composites was: rapid initial adsorption, slow uptake, small rate increase and then equilibrium. The mechanism of phenol red uptake could be well represented by the pseudo second-order kinetic model with equilibrium being reached after a period of time, ranging between 1-5 hours. The linear Langmuir model was the best model for describing adsorption of phenol red onto lignocellulose modified with siloxanes and composites while the Freundlich model appeared to be best for clinoptilolite modified with siloxanes. The general mechanism of used motor oil uptake onto lignocellulose and clinoptilolite modified with siloxane or composites was: rapid uptake, equilibrium and the process occurs over a short period (10 min). The pseudo second-order kinetic model appeared to be the best representation of this adsorption. The linear Langmuir isotherms are the best fitted model for used motor oil uptake onto the adsorbents prepared. Adsorption of cyanide occurred very quickly (10 to 30 min). For lignocellulose and clinoptilolite modified with siloxanes, desorption occurred soon after adsorption and thus no kinetic model nor isotherms of adsorption were deduced. However, adsorption of cyanide onto composites could be represented by the pseudo second-order kinetic model. Nanofibres were fabricated by electrospinning of the modified lignocellulose and composites by blending them with PAN in a solvent mixture of DMF-DMSO. Nanofiltration was achieved by packing the nanofibres prepared into a pipette and filtering polluted water. Nanofiltration was assessed by measurement of the turbidity of water which dropped from 63 NTU for polluted water to 3.06 NTU for filtered water. , Thesis (PhD) -- Faculty of Science and Agriculture, 2012
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- Date Issued: 2012-12