Physiochemical and heavy metals fingerprints of the final effluents of Adelaide and Seymour wastewater treatment facilities in the Eastern Cape, South Africa
- Authors: Mutukwa, Dorcas
- Date: 2017
- Subjects: Water -- Purification Effluent quality -- Testing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8089 , vital:31520
- Description: Wastewater contains pathogens, heavy metals, nutrients, organic matter and other toxic chemicals and when discharged into the environment without proper treatment, it may cause adverse health problems and environment degradation. There have been reports in the Eastern Cape Province, South Africa of inadequate treated wastewater effluents being discharged into freshwater environments. This study reports on the physicochemical and heavy metals qualities for two wastewater treatment facilities in the Eastern Cape, South Africa over a six-month sampling period (September 2015 to February 2016). Wastewater effluent samples were collected from the influents, final effluents and receiving waterbodies as well as sludge samples in replicates. The physicochemical parameters were analysed using standard methods (APHA, 2012). The acid digested heavy metals samples were analysed using Atomic Absorption Spectrophotometer (iCE 3500 Thermo Fisher Spectrometer). The concentrations were compared to recommended limits used in South Africa and World Health Organisation (WHO). Physicochemical qualities assessed at Adelaide wastewater treatment plant ranged as follows: temperature (21.6 - 30.5 oC), turbidity (2.1 – 71.3 NTU), electrical conductivity (EC) (743.0 – 898.3 μ/Scm) and dissolved oxygen (DO) (2.11 – 3.50 mg/L) while the ranges of the parameter assessed at Seymour wastewater treatment plant ranged as follows: chemical dissolved oxygen (COD) (41.7 – 115.3 mg/L), EC (628 and 797.7 μ/Scm) and nitrates (4.6 – 11.0 mg/L. The heavy metals concentration for the final effluents at Adelaide wastewater treatment plant ranged as follows: Cd (0 – 0.002 mg/L), Cu (0 – 0.096 mg/L) and Fe (0 – 0.498 mg/L). Cu concentrations in sludge at Seymour wastewater treatment plant ranged between 83.82 and 132.07 mg/L. Reduction efficiencies of Adelaide in removing chlorides and sulphates were 33 and 36 percent respectively. Findings of study revealed negative impacts of inadequately treated effluents on receiving waterbodies and this puts communities which rely on the water as immediate source of fresh water for domestic purposes at health risk.
- Full Text:
- Date Issued: 2017
Physiochemical, fatty acids, lipid oxidation, sensory characteristics and consumer acceptance of warthog cabanossi produced with pork backfat and fat-tailed sheep backfat
- Authors: Mahachi, Leo Nyikadzino
- Date: 2017
- Subjects: Fatty acids Lipids -- Oxidation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/6259 , vital:29530
- Description: The objective of this study was to determine the effect of different fat inclusion levels and fat types on the physical and chemical attributes, lipid oxidation, fatty acid composition and sensory characteristics of warthog cabanossi. To achieve this, three types of cabanossi with different pork backfat levels (10 percent, 20 percent and 30 percent) were produced for the first experiment. The results from the study showed that different inclusion levels of pork backfat had an influence (P ≤ 0.05) on the physicochemical and fatty acid composition of warthog cabanossi but did not influence lipid oxidation (P > 0.05). The highest (P ≤0.05) pH, weight and moisture decline was observed in the 10 percent pork backfat cabanossi compared to the 20 percent and 30 percent treatments. However, no differences (P > 0.05) in the water activity of the product were observed. As expected total fat was lower in the 10 percent fat treatment and increased concomitantly. Similarly, protein, ash and salt were higher in the 10 percent fat cabanossi and decreased concomitantly. Differences in the fatty acid composition were observed between treatments. Furthermore, backfat level affected the sensory attributes and consumer acceptance of the cabanossi. Ten percent backfat cabanossi was scored higher (P ≤0.05) for most sensory attributes. Consequently, it was observed that the consumer panel preferred and scored the 10 percent fat cabanossi higher with regards to appearance and taste. In the second experiment, two cabanossi treatments of different fat types (pork backfat and fat-tailed sheep backfat) were produced. The weight loss, moisture content, pH, water activity and salt content did not differ (P > 0.05) between the two cabanossi products. However, there were differences (P ≤0.05) in the protein, fat and ash contents; where protein and ash were higher in the pork backfat cabanossi whilst fat was higher in the sheep backfat cabanossi. Thiobarbituric reactive substances (TBARS) were similar (P > 0.05) between the two fat types cabanossi which could be explained by similar fatty acid profiles being reported for the two cabanossi although the n-6:n-3 ratio was higher (P ≤0.05) in sheep backfat cabanossi. Results from the descriptive sensory analysis showed two distinct products (P ≤0.01) where pork backfat cabanossi scored higher for most attributes. However, the lower scores for sheep backfat cabanossi were within an acceptable range. Sheep backfat cabanossi were also scored for unique attributes that were not detected in the pork backfat cabanossi. This study concluded that fat-tailed sheep backfat can be used to produce an unique cabanossi product of acceptable quality.
- Full Text:
- Date Issued: 2017
Pollution potential of on-site dry sanitation systems associated with the Mzimvubu Water Project, Eastern Cape, South Africa
- Authors: Mamera, Matthew
- Date: 2018
- Subjects: Water resources development Sustainable development -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/6038 , vital:29485
- Description: Protecting the environment requires tools that can be used to monitor environmental conditions for proper sustainable management of water resources. The Mzimvubu River is the largest undeveloped river, in the poorest region of South Africa. The South African government announced plans to construct two large storage dams (Ntabelanga and Laleni) in the Tsitsa River, one of the largest tributaries to the Mzimvubu River. The dams and associated infrastructure is termed the Mzimvubu Water Project (MWP). In developing countries like South Africa, several households use pit latrines. Moreover, many people also rely upon untreated groundwater supplies for their drinking water. The shared utilization of both pit latrines and groundwater resources, can lead to human and ecological health risks from microbial and chemical pollutants. These threats can be accelerated due to a permanent rise in the water table associated with dam constructions. Four hillslope sites with pit latrines (MT1, MT2, MT3 and MT4) above 1st order tributaries to the Tsitsa River, in the vicinity of the proposed MWP were chosen for this study. The soils were described and classified at selected locations below the pit latrine and above the tributary. Undisturbed core samples were from representative soil horizons on which hydraulic properties were determined in the laboratory. Samples were also collected to determine the feacal coliform and other bacterial concentrations during a winter and summer period. Mechanistic modelling with Hydrus 2D for a 121 day period was conducted to determine the risk of pollution to surface and groundwater from the various sites. Apedal soils of the Clovelly form dominated upper slopes of MT1 and the lower slopes of MT2. A Clovelly form is hydropedologically termed a recharge soil, as morphological indicators of saturation are absent. Hydromorphic soil properties were observed in the sub-surface B horizons of a Tukulu form in MT1-3 and MT4. High clay contents and strong structure soils of the Sepane form were dominant in MT3. The soils of MT1 and MT2 are relatively sandy with slightly higher hydraulic conductivities compared to MT3 and MT4. In general higher measured faecal coliform concentrations were higher in winter as compared to summer seasons but in most sites both winter and summer seasons had counts < 1 CFU/g. The highest concentrations of total bacteria (9 x 106 CFU/ g soil) was observed in MT3-1. Other sites with potential pollution include MT3-3, with a count above 4 x 104 CFU /g soil in winter and MT1-1 with a count above 2.2 X 104 CFU /g soil in summer. In most of the sites, the E. coli bacteria detections were low (< 1 CFU/g) during both seasons. The highest value in summer of 1.8 x 102 CFU/g was observed in MT3-3 which increased from 1.2 x102 CFU/g in winter. As the soil water flow rate increase the mobility of bacteria increase as well. Hydrus simulations showed that surface water resources are threatened by pollution from MT3 and MT4 due to the prominence of lateral flow. Groundwater pollution is more likely to occur on MT1 and MT2 as the soils are freely drained. Future work should focus on the more direct measurements and modelling of the migration of bacterial pollutants from pit latrines to various water resources.
- Full Text:
- Date Issued: 2018
Preparation, characterization and in vitro analysis of polyamidoamine drug conjugates containing ferrocene and platinum analogues
- Authors: Mugogodi, Ansley
- Date: 2018
- Subjects: Ferrocene
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/10145 , vital:35360
- Description: Polyamidoamine drug conjugates were prepared from analogues of ferrocene and platinum. Standard reaction procedures were followed in the synthesis of platinum and ferrocene analogues. Michael addition reaction of amines to the activated double bonds of methylenebisacrylamide was applied for preparation of the water soluble polyamidoamine carriers onto which drug analogues were attached. The drug release studies of the conjugates were evaluated at different pH environments. The results obtained from drug release studies showed that rate of drug release was variable depending on the conjugate and pH environment. Mathematical drug release models by Korsmeyer-Peppas were used to determine the drug release characteristics of the ferrocene and platinum based drugs from polyamidoamine drug conjugates. Cytotoxicity potential of the analogues and polyamidoamine drug conjugates was tested on selected cell lines. Cisplatin was used as the standard for comparison of the IC50 values obtained for the compounds tested for cytotoxicity activity. The results from six polymer drug conjugates tested for cytotoxicity activity showed that conjugation of analogues to polyamidoamine carrier enhanced the activity of the analogues in some of the polyamidoamine drug conjugates. Various techniques such as Fourier Transform Infrared (FTIR) spectroscopy, Proton Nuclear Magnetic Resonance spectroscopy (1H NMR), Scanning Electron Microscopy (SEM), transmission electron microscopy (TEM), Transmission Electron Microscopy (TEM) and Energy Dispersive X-ray (EDX) spectroscopy were employed for the characterization of the ferrocene and platinum analogues, polyamidoamine carriers and drug conjugates.
- Full Text:
- Date Issued: 2018
Prevalence of Group B streptococcus and staphylococcus aureus colonization in the anogenital tract of pregnant women in the Eastern Cape Province, South Africa
- Authors: Stofile, P Z
- Date: 2017
- Subjects: Streptococcal infections Staphylococcus aureus
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/5983 , vital:29462
- Description: Neonatal sickness and death is increasingly becoming a public health problem worldwide. The colonization of Group B Streptococcus and Staphylococcus in the rectovaginal area is among the sources of infections in neonates which can result in illness and mortality. The over exposure of humans to antibiotics is the possible cause of resistance in bacteria. These resistant strains can be passed onto offspring, leading to resistant infections and increasing the morbidity of neonates because of treatment failures. Many people, including healthcare personnel are not aware of the effect of these bacteria, and informing clinics and hospitals can help create awareness and monitoring the levels of resistance among bacteria can assist in preventing the transference of the bacteria. In this study we investigated the prevalence of group B Streptococcus (GBS) and Staphylococcus aureus in the anogenital tract of pregnant women in the Eastern Cape Province, South Africa. A total of 49 isolates from 25 (30.5 percent) pregnant women colonized with GBS were isolated from vaginal and rectal swabs of 82 pregnant women at 25-37 gestation who participated in this study. These isolates were obtained using standard microbiological methods and confirmed by polymerase chain reaction (PCR) technique aimed at the ScpB gene. The isolates were further screened for the presence of 9 serogroups (Ia, Ib, II, III, IV, V, VI, VII, VII) and serogroups Ib 2 (4.8 percent), II 20 (40.8 percent) and IV 5 (10.2 percent) and 22 non-typable (44.9 percent) were identified. Susceptibility profiling of the isolates to 12 antibiotics (tetracycline, clindamycin, erythromycin, gentamycin, naladixic acid, norfloxacin, chloramphenicol, cefuroxime, cefotaxime, imipenem, penicillin and vancomycin) was tested in vitro by the standardized disc diffusion method. All the confirmed GBS isolates (49) were resistant to erythromycin, tetracycline and clindamycin. A higher percentage of the isolates were resistant to gentamycin 44 (90 percent), nalidixic acid 41 (84 percent), penicillin 41 (84 percent), chloramphenicol 38 (78 percent), cefuroxime 36 (74 percent), imipenem 36 (74 percent), cefotaxime 35 (71 percent), norfloxacin 32 (65 percent) and vancomycin 31 (78 percent). Multiple antimicrobial resistance patterns ranged from 9‒11 and indices ranged from 0.7‒0.9, respectively. Among the antimicrobial resistance determinants examined, genes encoding for resistance to erythromycin ermB 25 (51 percent), tetracycline tetM 32 (65 percent) and penicillin bla-Z 4 (8 percent) only were identified. On the other hand, screening for S. aureus yielded a total of 7 isolates from 4 study participants as confirmed by PCR based on staphylococcal, nuc gene. The isolates were further screened for the presence of six virulence genes (Hla, Hlb, LUKM, LUKED, PVL, Eta and Etb) and antibiotic susceptibility pattern by the disc diffusion method using 12 (penicillin, vancomycin, tetracycline, rifampicin, imipenem, gentamycin, chloramphenicol, norfloxacin, oxacillin, erythromycin and sulfamethoxazole-trimethoprim) antibiotics that are adopted in the treatment of infections caused by the organism. PVL 6 (85.7 percent) and eta 1 (14.3 percent) were the two virulence genes detected. The following percentages of antibiotics resistance among the isolates were observed; penicillin G 7 (100 percent), clindamycin 7 (100 percent), vancomycin 5 (100 percent), rifampicin 5 (71 percent), oxacillin 5 (71 percent), erythromycin 5 (71 percent) gentamycin 3 (43 percent), norfloxacin 3 (43 percent), sulfamethoxazole-trimethoprim 3 (43 percent), chloramphenicol 2 (29 percent), imipenem 1 (14 percent). Multiple antimicrobial resistance patterns ranged from 7‒8 and indices ranged from 0.6‒0.7, respectively. Genetic profiling of the resistance genes identified erythromycin ermB 5(71.4 percent), tetracycline tetM 5(71.4 percent) and penicillin bla-Z 1(14.3 percent) only. The findings from the study have revealed GBS and S. aureus colonization of pregnant women in the Eastern Cape Province, and these have great public health implications especially for the neonates who are mostly likely to be infected during birth. The unidentifiable multidrug resistant serogroups of GBS as well as resistant S. aureus limit the choice of drugs in the management of infections caused by these pathogens more so if transmitted to infants. Therefore asymptomatic pregnant women needed to be properly educated about the bacteria as well as the precautions that need to be taken.
- Full Text:
- Date Issued: 2017
Productivity and profitability of different maize varieties and cropping systems used in the smallholder sector of the Eastern Cape Province of South Africa : implication on food security
- Authors: Kambanje, Ardinesh
- Date: 2018
- Subjects: Crop yields Crops and climate Cropping systems
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/6237 , vital:29528
- Description: Low maize yields in the midst of abundant arable land, favourable climatic conditions, input and financial support programs, plagues smallholder maize farming in Eastern Cape Province. These scenarios have led the province to be a net importer of maize. In essence, low production may signify a mis-match between maize varieties being promoted amongst smallholder farmers and their farming system. Thus, the main objective of the study was to investigate the productivity and profitability of different maize varieties and cropping system under smallholder agriculture in selected villages of the Eastern Cape Province of South Africa as well as, the implications posed on the household food security. The study sought to assess: (i) the productivity of different maize varieties and cropping systems, (ii) the effect of GM maize adoption on food security among smallholder farmers, (iii) the profitability of GM, conventional hybrids and OPV maize varieties produced by farmers under different agro-ecological conditions and (iv) the impact of different maize varieties and cropping systems on food security in the smallholder agriculture. A cross sectional quantitative-based survey study was carried out to obtain information from a total of 650 small holder farmers. The study was conducted in three local municipalities in Oliver Reginald (OR) Tambo District Municipality of the Eastern Cape Province of South Africa. Descriptive statistics, partial factor productivity, gross margin analysis, household food insecurity access score (HFIAS), ordinal logistic and linear regression were the analytical techniques used in establishing correlations among variables. Results obtained from the survey indicated that under mono-cropping system, Genetically Modified (GM) maize variety was highly productive with an average yield of 1.9 t/ha whilst, improved OPV maize variety was productive (with an average yield of 1.6 t/ha) under mixed cropping system. Furthermore, GM maize (GM = -R418.10), and landrace (GM = -R1 140.29) maize varieties had negative gross margins whilst, conventional hybrids (GM = R5 181.21) and improved OPV (GM = R1 457.41) were profitable. There was a significant and negative correlation between use of GM maize variety and reduction of household food insecurity. GM maize varieties, improved OPV, white maize, white as well as yellow GM maize varieties had a significant impact in reducing household food insecurity; whilst using more than one variety of maize (landraces and GMO) positively influenced household food insecurity. In light of these research findings, it is recommended that, there is need to address household food security by growing improved OPVs under a mixed cropping system and GM maize under monocropping system.
- Full Text:
- Date Issued: 2018
Quality indices of the Eastern Cape beach waters in Buffalo City Metropolitan Municipality, Eastern Cape, South Africa
- Authors: Mani, Sinalo
- Date: 2017
- Subjects: Waterfronts -- Recreational use -- South Africa -- Eastern Cape Water quality -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/19054 , vital:40108
- Description: Surface waters constitute important sources of water and serve for agricultural, recreational and industrial purposes; however, the vulnerability of such water sources to pollution presents serious ecological, public health and economic problems of global concerns. Beach water quality is monitored to reduce the risk of recreational waterborne illnesses. Water samples were collected between September 2014 and August 2015 at Eastern beach and a total of 5 physicochemical parameters, counts of faecal coliforms, E. coli and Enterococcus isolates were determined using standard analytical procedures. Confirmed Escherichia coli isolates were assessed for virulence genes associated with pathogenic E. coli strains responsible for intestinal and extra-intestinal infections. Recovered E. coli isolates were then interpreted for their antibiogram profiling using disk diffusion method. On the other hand, the recovered Enterococcus isolates were characterized for Enterococcus speciation of key species that are normally implicated in infections and further assessed for their antibiogram profiling by disk diffusion method. The physicochemical qualities of the water ranged as follows: turbidity (1.4 to 36.8 NTU); pH (7.0 to 8.6); temperature (14.5 to 24.5 ºC); total dissolved solids (TDS) (5.2 to 46 mg/L) and electrical conductivity (EC) (8.2 to 70.7 μS/cm). Microbiological qualities obtained were as follows: faecal coliform (101 to 103 CFU/100 mL); Escherichia coli (101 to 103 CFU/100 mL); and enterococci (101 CFU/100 mL to 102 CFU/100 mL). Only 38/104 (37 percent) harbored at least 1 virulence gene while 66/104 (63 percent) of the isolates harbored none. Most frequent virulence genes were eae for EPEC/EHEC, fliCH7 for EHEC, ibeA for NMEC, while daaE for DAEC and ipaH for EIEC were discovered in three isolates each; bfp for EPEC was detected in 2 isolates and lt gene for ETEC in one isolate. EAEC and UPEC genes were not detected in all the isolates. All tested isolates were resistant to ampicillin, tetracycline, gentamycin and chloramphenicol (85 percent), ciprofloxacin (78 percent), trimethoprim (54 percent) and norfloxacin (54 percent) and the Multiple Antibiotic Resistance Index for all isolates ranged between 0.6- 1.0 with the average being 0.8, which exceeded the threshold value of 0.2. Among the 96 recovered Enterococcus isolates, 55 percent were identified as E. faecium, 22 percent were E. hirae, 2 percent were E. durans and 21 percent were uncharacterized Enterococcus species. E. faecalis and E. casseliflavus were not detected amongst the isolates. All isolates were resistant to vancomycin, erythromycin and chloramphenicol. While the resistance against other antibiotics followed the order: tetracycline (97 percent), gentamycin (96 percent), ciprofloxacin (93 percent), linezolid (91 percent), ampicillin (91 percent) and trimethoprim (62percent). Only 6 percent of the isolates were susceptible to trimethoprim and the MAR index for all isolates ranged between 0.6- 1.0 with the average being 0.9 which greater than 0.2, suggesting that these bacterial strains originates from environments with high use or contamination of antibiotics.
- Full Text:
- Date Issued: 2017
Quality indices of the Nahoon beach and canal in Buffalo City Metropolitan Municipality, Eastern Cape, South Africa
- Authors: Ebomah, Kingsley Ehi
- Date: 2017
- Subjects: Pathogenic bacteria -- South Africa -- Eastern Cape Water quality -- South Africa -- Eastern Cape -- Measurement Water -- Microbiology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8122 , vital:31525
- Description: Faecal indicator bacteria have long been recommended for usage in water quality monitoring of various water sources including surface water. A large number of people in different parts of the world often engage in recreational and other commercial activities at the various beaches along the coastal lines, most especially, during summer season and festive periods. It is generally assumed that beach water is safe all the times, however, there have been increasing reports of beach and other coastal water pollutions because of rising anthropogenic activities around coastal areas globally. The presence of pathogens in faecal contaminated beach water either directly or indirectly increases the risk of human exposure which may result in skin infections as well as the ingestion and transmission of multidrug resistant pathogens. Microorganisms may gain entry into beach water directly from improperly treated final effluents released by wastewater treatment plants and from agricultural runoffs and/or faulty drainages. The aim of this study was to evaluate the quality indices of the Nahoon Beach and canal waters in the Eastern Cape Province of South Africa. In order to achieve this aim, the objectives of this study were as follow: to determine the seasonal variations of the physicochemical characteristics of the Nahoon beach and canal waters, to assess the microbiological quality of the beach water by assessing the prevalence of potentially E. coli and Enterococcus species, and to evaluate the antibiogram profile of the E. coli pathotypes and Enterococci species recovered from the beach water samples. Water samples were collected bi-weekly for a period of twelve months, during which on-site physicochemical analyses were carried out. Bacteriological assessment was performed using the membrane filtration technique and the necessary incubation conditions were followed. Identification of the target organisms was done by molecular based methods using PCR (polymerase chain reaction) while antibiotic susceptibility testing was done using the disk diffusion method. During the spring season (August to October) and periods of festive activities (December, January and March), it was observed that turbidity was at its highest, consequently, influencing total dissolved solids and a rise in the values of pH and electrical conductivity. Microbiological qualities assessed follow the order: Escherichia coli (101 – 103 CFU/100ml) and Enterococcus (101 – 102 CFU/100 ml). The results show that 41.2percent (107/260) of the presumptive E. coli isolates were positive for uidA gene. A total of 73 out of 107 (68.2percent) PCR-confirmed E. coli isolates were observed to belong to different pathotypes while 59percent (102/172) of the presumptive Enterococcus strains isolated were positive for SodA gene (Enterococcus spp.). Out of 102 enterococci isolates, 45 strains were identified as species (E. faecalis and E. faecium) and these were subjected to antibiotic susceptibility testing. The E. coli strains exhibited a frequency of 100percent resistance against ampicillin while the Enterococcus strains also showed 100percent resistance against vancomycin and linezolid. Target genes eae 11 (10.3percent); ipaH 14 (13.1percent); ibeA 48 (44.9percent) that encode pathogenicity in E. coli were successfully amplified by PCR suggesting that the isolates are potentially pathogenic strains whereas Enterococcus spp. including Enterococcus faecalis 26 (25.5percent) and Enterococcus faecium 19 (18.6percent) were also identified in the water samples. In this study, the phenotypic antibiogram profiles of the E. coli isolates revealed that all 73 (100percent) of the pathotypes were resistant to ampicillin, 67 (91.8percent) were resistant to amikacin, gentamicin and ceftazidime while about 61 (83.6percent) and 51 (69.9percent) were resistant to tetracycline and ciprofloxacin as well as trimethoprim respectively. About 21.9percent (16) of the E. coli isolates exhibited multiple antibiotic resistances with 100percent being resistant to eight antibiotics whereas multiple antimicrobial resistances were observed in 14 (31percent) of the enterococci strains and the most predominant profile was the simultaneous resistance to ampicillin, penicillin and vancomycin. The results obtained in this study show that the beach water generally did not comply with the set guidelines. The results also suggest the possible survival and prevalence of potentially virulent E. coli as well as Enterococcus strains in the aquatic environment which may be a cause of concern for public health. Monitoring of the quality of surface water and antimicrobial resistance (AMR) in bacteria is of great importance and has clinical and human health significance. Nonetheless, this study underscores the need for more detailed study of other waterborne pathogens of health importance including enteric viruses to ascertain the safety of the beach for human use.
- Full Text:
- Date Issued: 2017
Regional and community food systems for rural households :|bthe case of maize in Mqanduli, Eastern Cape Province, South Africa
- Authors: Qangule, Mondli
- Date: 2018
- Subjects: Sustainable agriculture -- South Africa -- Eastern Cape Food supply -- South Africa -- Eastern Cape Agricultural systems -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/10232 , vital:35383
- Description: Smallholder farmers have been growing food in their communities, but some are still food insecure. Therefore, appropriate food systems are very important for smallholder farmers’ self-reliance as well as food and nutrition security. The study focuses only on community and regional maize food systems for rural households. The main aim of this study was to investigate the regional and community food systems for smallholder maize farmers in Mqanduli. The objectives of the study were to profile smallholder maize farmers, describing the existing maize food systems and patterns in Mqanduli and also to determine factors that influence farmers’ participation in local or regional markets. Availability or convenient sampling and random sampling techniques were used to collect primary data from smallholder maize farmers. Descriptive statistics was used to profile smallholder farmers, as well as, in describing the existing maize food systems at Mqanduli. The binary logistic regression model was used to analyse the variables that had influenced the smallholder famers’ participation in markets. Descriptive results revealed that, smallholder maize farmers in Mqanduli are characterised by high participation in both local and regional markets. Moreover, they utilized both community and regional food systems. Logistic regression results indicated that, out of 11 variables included in the analysis as factors influencing farmers’ participation, 6 of them (age, level of education, market information, distance, access to credit and extension visit) were found to be significant and 5 (gender, amount of land, transport availability etc) were not significant. However, access to credit and distance were found to be the most significant variables, showing a positive relationship to smallholder maize producer`s market participation. Therefore, it was recommended that, there must be more investment in research by government and policy makers when it comes to food systems especially in rural areas, to enhance smallholders’ livelihood. More access to credit is also needed by farmers in order to be able to market their produces.
- Full Text:
- Date Issued: 2018
Risk factors associated with developing asthma and tuberculosis : a case study of a hospital, Lagos Nigeria
- Authors: Adeniji, Tolulope Olubunmi
- Date: 2015
- Subjects: Asthma -- Nigeria -- Epidemiology Diseases -- Risk factors -- Nigeria
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/13216 , vital:39616
- Description: Purpose: The purpose of the study is to assess risk factors associated with developing asthma and tuberculosis. Methodology: A quantitative study was conducted on 133 randomly selected tuberculosis respondents, 91 of whom were suffering from TB at the time of the study. 120 respondents were also selected randomly for asthma of which 82 were asthmatic. Data were collected by using a self-structured questionnaire. The statistical analysis was done with the statistical package for social sciences (SPSS, version 18) using the descriptive statistics and logistic regression model. Results: Findings from the study show that a large percentage of the participants for both diseases were male, and the carriers of the diseases were also mostly male. Amongst the factors assessed, smoking, a weak immune system and a history of contact with tuberculosis infected persons were factors independently associated with developing tuberculosis. In the case of asthma, family history, smoking and exposure to allergen irritants were the factors independently associated with developing the disease. Conclusion: The findings highlight the need for increasing awareness through information, education and communication to address the risk factors of tuberculosis and asthma in order to decrease the rate of outspread. Recommendations: Factors triggering asthma among humans should be avoided. Since tuberculosis can be contracted through person to person contact, proper sanitation and regular medical attention are advocated for safeguarding personal and public health.
- Full Text:
- Date Issued: 2015
Role of home gardens in enhancing food security in rural and urban areas : a case study of Nkonkobe Municipality, Eastern Cape South Africa
- Authors: Mcata, Bongiwe
- Date: 2013
- Subjects: Food security -- South Africa -- Eastern Cape Gardening -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/13105 , vital:39465
- Description: In South Africa, home gardens are an important source of food and nutrition. In both urban and rural areas, home gardens have been a traditional way of providing food and offer a great potential for improving household food security and alleviating micronutrient deficiencies. In the Eastern Cape Province which is the second largest province in South Africa, and is characterized by poverty, home gardens can help enhance household food security through direct access to nutritionally-rich fresh vegetables. Home gardens are also becoming an important source of food and income, especially for poor households, in both urban and rural areas. the province. The findings illustrates that livelihood diversification may not be relevant for household welfare in the case of South Africa. However promoting livelihood diversification remain imperative for household welfare in the South Africa in the long-run. It further illustrate that gender of head, education, access to electricity, home agriculture are imperative for the improvement of household welfare. Hence the study recommends policy relating to conditional granting of cash grant support, intensification of rural development programmes, education affordable and accessible at all level and support home stead or subsistence agriculture This study was carried out to investigate the role of home gardens in addressing household food security in urban and rural areas of Nkonkobe Municipality. The study also identified the factors affecting the ownership of home gardens and food security. Data was collected from 160 households from both the urban and rural areas of the Nkonkobe Municipality. These households were selected through the use of stratified random sampling. Data was collected by a questionnaire was administered through face-to-face interviews. Frequencies and means were used to describe the general characteristics of the households as well as ownership patterns of home gardens. In order to determine the factors that influence home gardens and food security among the sampled households, a binary logistic regression model was adopted. The results show that the statistically significant variables, at the 5percent level, on food security are total income and home garden ownership. Food security was measured using the dietary diversity score. Location, access to land and education significantly affect the ownership of home gardens positively. In view of the research findings, several policy proposals are suggested. These include greater investment in programmes such as Massive food projects, Siyazondla and related home garden initiatives. Household income can be improved by promoting more non-agricultural activities in order to ensure household food security.
- Full Text:
- Date Issued: 2013
Rose-scented geranium oil yield and composition as affected by leaf age, herbage drying and paclobutrazol
- Authors: Dyafta, Viwe
- Date: 2018
- Subjects: Essences and essential oils Rose geranium oil
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/10747 , vital:35733
- Description: Essential oil of rose scented-geranium is highly versatile and this makes it a very important essential oil in aromatherapy, medicine and cosmetics as well as in flavouring of food and drinks for different industries. The value of the essential oil is directly related to the quality of the oil. Therefore, it is important that the geranium growers take good care of agricultural practices in the production of essential oils as it is a crucial step where oil quality and yield is either obtained or lost. Thus, growing conditions and harvesting time must be cautiously established and controlled including herbage drying to ensure optimum yields and high quality of rose-scented geranium oil. The geranium oil production industry in South Africa is still expanding and oil yield & quality variation is important. This study was undertaken to determine the effects of herbage drying and method, leaf age and paclobutrazol concentrations on oil yield and quality of rose-scented geranium. The responses of oil yield and quality to drying effect was conducted on plant materials which were harvested from the University of Fort Hare Research Farm and glasshouse in December 2014 and October 2015. To determine the effect of drying method on essential oil yield and composition of rose-scented geranium the harvested leaves were dried in direct sunlight (20-35℃) and in a shade conditions (25℃/room temperature). Essential oil was obtained by hydro-distillation using a Clevenger apparatus. The oil samples were analysed by gas chromatography (GC) at the Dohne Agricultural institute. The major components of the oil conducted under the shade method were Linalool (5.58 percent), Menthone (0.68 percent), Citronellol (36.14 percent), Geraniol (7.29 percent), CitronellylFormate (15.39 percent) and GeranylFormate (3.30 percent), whereas those that were sun dried comprised of Linalool (3.56percent), Menthone (0.76 percent), Citronellol (32.25 percent), Geraniol (6.49 percent), CitronellylFormate (14.84 percent) and GeranylFormate (3.15 percent). The analysis of variance showed that freshly dried herbage followed by shade drying is suitable for highest oil yield. In addition, changes in essential oil composition and oil yield with leaf age in rose-scented geranium (Pelargonium capitatum x P. radens cv. Rose) were investigated in a glasshouse of the University of Fort Hare, during January to April and April to August 2012. The plants were allowed to grow to about 12-leaf stage. From top to bottom, the leaves were put into five groups (each group comprising two successive leaves, Pairs 1, 2, 3, 4 and 5). Leaf growth (leaf fresh and dry mass), and essential oil yield and composition data were collected and compared. The results indicated that, leaf fresh and dry mass data were significantly lower in the top-most (youngest leaves) as compared with the rest of the leaf pairs harvested. Essential oil in the youngest leaves was colourless, but as the leaves advanced with age, the oil tended to have a blue-green colour. Oil content (on dry mass basis) from the top to bottom, for Leaf Pairs 1, 2, 3, 4, and 5 were about 7.0, 4.9, 3.2, 2.4, 1.9 percent, respectively. Oil yield showed a significant increase in the second youngest pair of leaves and progressively declined, resulting in a significant lower yield in the oldest leaves. Leaf Pairs 1, 2, 3, 4 and 5, contributed about 19.3, 22.0, 17.71, 12.03 and 8.5 percent of the total yield per branch, respectively. Citronellol:Geraniol ratio was significantly lower in the young leaves than in the old leaves. Linalool and Geranylformate concentrations were the highest in the youngest leaves, and the opposite was observed in isomenthone. Other essential oil components did respond to leaf age. In support of research by Góra et al. (2002), Motsa et al. (2006) and Southwell and Stiff (1989), the current results indicate that early leaf age affects essential oil yield and composition. Thus, shorter regrowth cycles would increase essential oil yield and quality of rose-scented geranium. The paclobutrazol experiment was conducted in a glasshouse at the University of Fort Hare, Alice. A randomized complete block design with four replications was applied. One month after cutting back of the plants, PBZ was applied at the rates of 0, 100, 200 and 300 mg/l on the regrowth and harvested at four months of age. Data, such as chlorophyll content, plant circumference, plant height, fresh and dry mass and oil composition, were determined. The results highlighted that with an increase in PBZ concentration, total herbage mass and plant height tended to decline (Esmaielpour et al., 2011). Thus, in most cases herbage fresh and dry weight of treated plants had lower weight than the control. Paclobutrazol significantly reduced canopy circumference. There was no significant difference (P< 0.05) in oil yield and composition. Furthermore, observations showed that plants receiving PBZ had a deep green colour although the chlorophyll data did not show a significant difference. These results clearly show that PBZ helps geranium plants with compact canopy, which would enable farmers to increase income by increasing planting density, reducing distillation cost of the herbage volume and mass without reducing oil yield per plant. The findings, add another dimension to practical use of this hormone for commercial cultivation.
- Full Text:
- Date Issued: 2018
Rural household dietary diversity and food security in Raymond Mhlaba local municipality
- Authors: Mnukwa, Minentle Lwando
- Date: 2019
- Subjects: Food security
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/17282 , vital:40872
- Description: In order to formulate or implement relevant food security programmes in rural areas, it is important to have a deep understanding of the food security status of rural households. Accordingly, this study was conducted to assess the food security status of rural households in Raymond Mhlaba Local Municipality. The study also sought to identify the socio-economic characteristics that influence household food security status. The research relied on primary data. Primary data were collected by using a structured questionnaire, which covered both demographic features of respondent households, and their recent food consumption patterns. The household survey was conducted among 272 participants of Raymond Mhlaba Local Municipality. Statistical tools employed in this study included both descriptive and inferential statistics. The main descriptive statistics used were frequency tables, means and percentages in relation to a number of demographic characteristics and food security indicators. The main indicator of food security/insecurity used in the study was the Household Dietary Diversity Score (HDDS). After calculating the HDDS for each household, households were defined as either food secure or insecure depending on whether their HDDS was above or below the average HDDS. A logistic regression model (binary or dichotomous) was then used to identify socio-economic factors that influence some households to have above-average rather than below-average food security levels. The Binary logistic regression model revealed that four out of eight variables included in the model were significant in explaining the variation in the food security situation of households in the study areas, namely age of household head, education level of household head, household income and household size. Of these, the first three were positively associated with aboveaverage food security status, while household size had a negative association. A Tobit model was further used to identify the determinants of the household dietary diversity score. The exact same variables were significant from the Tobit analysis, and in the same manner.
- Full Text:
- Date Issued: 2019
Ruthenium (II) complexes of mixed bipyridyl and dithiolate/thiourea ligands :|bsynthesis, characterization, photophysical and electrochemical studies
- Authors: Nkombi, Pelokazi
- Date: 2018
- Subjects: Ruthenium Ruthenium compounds Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/10134 , vital:35358
- Description: Energy is one of the most important factor to influence human lives. The increased in energy demand as well as the detrimental effects posed by emission of greenhouse gases due to continue use of fossil fuels for electricity generation has led to a renewed focus on energy production using renewable energy sources which are relatively cheap, clean and environmentally sustainable. Among the various renewable energy sources used so far, the Dye Synthesized Solar Cells (DSSCs), a form of photovoltaic device is reported for their better efficiencies despite their low cost of production and ability to work relatively under low light conditions. A recent report on the solar-to-electricity conversion efficiency of a typical DSSC sensitizer made from zinc based porphyrin dye coupled with sintered titanium(IV) oxide as semiconductor was 13 percent. In this study, 2,2-bipyridyl-4,4-dicarboxylic acid (bpydc) was used as mixed ligand and four dithiolate ligands; L1 = dipotassium ethoxycarbonyl-1-cyanoethylene-2,2-dithiolate, L2 = dipotassium bis(ethoxycarbonyl)ethane-2,2-dithiolate, L3 = dipotassium cyanodithio imidocarbonate and L4 = dipotassium 2,2-dicyanoethylene-2,2-dithiolate were synthesized while four alkyl thiourea ligands, L5 = 1,3-dimethyl thiourea, L6 = 1,3-diethyl thiourea, L7 = 1,3-diisopropyl thiourea and L8 = 1-methyl thiourea were purchased and used as supplied without further purification. These ligands were used to prepare eight ruthenium(II) complexes of mixed bipyridyl/dithiolate/thiourea. The compounds were characterised by elemental analysis and spectroscopic techniques, namely: Fourier transform infrared (FTIR), Nuclear Magnetic Resonance (NMR), ultraviolet-visible and photoluminescence (PL). Cyclic voltammetry (CV) and square wave voltammetry (SWV) were used for the electrochemical studies. Photoluminescence and UV-Vis spectroscopies were used for geometric and photophysical studies of the complexes respectively. FTIR spectra confirmed presence of functional groups in ligands and coordination of these ligands to ruthenium(II) ions to form complexes. The UV-Vis confirmed that the Ru(II) dithiolene complexes exhibited square planar geometries while the Ru(II) thiourea complexes gave octahedral geometries, this was deduced from the transitions assigned to the complexes. All the ruthenium(II) complexes synthesized showed photoluminescence properties that are suitable for light harvesting and application for dye-sensitized solar cells. Cyclic and square wave voltammetry show Ru(II) thiourea complexes have better redox properties when compared to Ru(II) dithiolate complexes which is ascribed to ligand strength field possibly due to contribution from the two bonded NCS groups.
- Full Text:
- Date Issued: 2018
Screening of shark liver extracts for potential antimicrobial properties against selected pathogenic bacterial strains
- Authors: Mrwetyana, Thandolwethu
- Date: 2017
- Subjects: Fishes -- Diseases Pathogenic bacteria Antibiotics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12982 , vital:39413
- Description: The growing problem of antimicrobial resistance prevents the effective treatment of bacterial infections. Traditional antibiotics such as penicillin have been rendered ineffective against most microbial pathogens. This has led to an increased need for the development of new and improved drugs. The marine environment contains a great array of organisms with unique biological properties, but still remains one of our most underutilized biological resources. The aim of this study was to screen different shark liver extracts for antimicrobial properties. After optimizing the extraction methods, the liver extracts (oil and aminosterol) of three different shark species, namely the Dogfish (Squalus acanthias), the Catshark (Scyliorhinus capensis) and the Hammerhead (Sphyrna zygaena) shark, were screened for antimicrobial properties using the Kirby-Bauer disc diffusion method against selected bacterial pathogens (Helicobacter pylori, Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Bacillus cereus), after which the MIC was determined using the modified broth micro-dilution described by Vollekova et al. (2001). The most active extract was fractionated using thin layer chromatography, and TLC-direct bioautography was used to determine the antimicrobial properties of the fractionated compounds. The Folch et al and the Shinnar et al methods yielded the highest extract volumes for oil and aminosterol consecutively, and the catshark and dogfish aminosterol extract showed greater levels of bioactivity against all selected bacterial pathogens, with S. aureus showing highest susceptibility levels to both extracts. A total of 22 compounds were observed in the developed plates with two compounds (Rf 0.53 and 0.79) showing antimicrobial activity. Certain shark liver extracts possess antimicrobial properties that have the potential to be used in the development of new antimicrobial drugs.
- Full Text:
- Date Issued: 2017
Seasonal variations of essential oil composition and some biological evaluation of Pelargonium inquinans (L.) Ait. South Africa
- Authors: Tembeni, Babalwa
- Date: 2016
- Subjects: Pelargoniums Essences and essential oils Medicinal plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/6281 , vital:29537
- Description: Pelargonium inquinans which belongs to the family Geraniaceae, is an essential oil yielding plant. P. inquinans was collected from two different sites in Grahamstown (wild) and Alice, at the University of Fort Hare botanical garden. Authentication of the plant was done by Dr. T. Dold at Schonland herbarium, and the voucher specimen being T01. This study is focused at determining the chemical constituents and biological properties of the essential oils of wild and cultivated P. inquinans across different seasons, as the plant grows throughout the year. Seasonal collection of wild and cultivated P. inquinans was achieved in a duration of 12 months. 32 essential oil samples of P. inquinans were obtained by extraction using hydro-distillation technique for 3-4 hours. The chemical composition of the essential oils was determined using GC/MS and GC/FID. Amongst the 32 essential oils only 4 samples wild ( fresh stem and leaf) and cultivated ( fresh stem and leaf) from summer season were evaluated for analgesic activity using acetic acid induced writhings and hot plate nociception models in mice, anti-inflammatory activity was determined on the egg albumin- induced rat paw oedema in rats. The results obtained from GC-MS revealed a total of 169 components obtained from the leafstem, fresh/dry wild and cultivated P. inquinans. These essential oils showed a great deal of chemotaxonomic variation and similarity in the major and minor components along the season. In spring season the essential oils of wild and cultivated P. inquinans had abundance of hydrogenated sesquiterpenes (20.6percent-66.7percent). The major components were found to be α-caryophyllene (9.1percent-26.8percent), p-xylene (23.3percent-27.5percent), β-caryophyllene (11.4percent-30.9percent), o-xylene (6.3percent-39.4percent), β-thujene (8.7percent), isocaryophyllene (13.9percent), isoborneol (14.2percent), β-myrcene (5.7percent), geranyl acetate (13.8percent), toluene (7.9percent), β-gurjunene (18.5percent), α-cadinene (15.8percent), β-farnesene (14.2percent), 3-carene (12.1percent) and camphene (9.0percent). In summer season the essential oils of wild and cultivated P. inquinans were found to have abundance of hydrogenated sesquiterpenes (50.3percent- 63.0percent), oxygenated monoterpenes (30.4percent) and hydrogenated monoterpenes (20.8percent- 61.0percent). The major components were found to be α-caryophyllene (12.3percent-25.8percent), β-caryophyllene (15.1percent- 31.7percent), trans-caryophyllene (10.3percent- 17.8percent), phytol (14.2percent- 20.2percent), camphor (46.5percent), sabinene (27.8percent), elemol (18.1percent), z3-hexenyl isobutyrate (16.3percent), limonene (12.1percent), menthone (12.1percent)< E.E-β-farnesene (14.7percent), palmitic acid (9.6percent), eugenol (9.4percent), cis- β-ocimene (8.7percent), α-terpineol (8.7percent), geranyl acetone (7.8percent), β- humulene (7.5percent). linoleic acid (7.4percent), trans-linalool oxide (7.4percent), β-bisabolene (7.1percent), cis- linalool oxide (7.1percent), ionone (6.9percent), caryophyllene oxide (6.9percent) and germacrene d (6.3percent). In autumn season the essential oils of wild and cultivated P. inquinans were found to be rich in hydrogenated sesquiterpenes (29.3percent- 65.2percent) and oxygenated sesquiterpenes (22.8percent- 31.4percent). The major components were found to be α-caryophyllene (15.5percent- 23.4percent), β-caryophyllene (15.2percent- 17.2percent), β-myrcene (7.7percent-13.8percent), β-humulene (8.7percent- 15.2percent), caryophyllene oxide (9.8- 16.2percent), trans- caryophyllene (16.7percent- 23.3percent), α-humulene (11.8percent- 18.6percent), linoleic acid (11.2percent), palmitic acid (10.4percent), phytol acetate (8.5percent), -longipinene (8.3percent) and citronellol (7.8percent). In winter season the essential oils of wild and cultivated P. inquinans were found to have abundance of hydrogenated sesquiterpenes (25.1percent- 48.6percent), oxygenated monoterpenes (47.6percent), oxygenated sesquiterpenes (22.2percent- 28.0percent). The major components were found to be β-caryophyllene (14.6percent- 23.0percent), α-caryophyllene (9.4percent- 18.0percent), trans- caryophyllene (12.2percent- 14.6percent), α-cedrene (26.2percent), germacrene –d-4-ol (16.8percent), 2,6-dihydroxyacetophenone (15.6percent), (+) epibicyclosesquiphellandrene (15.3percent), E-β- farnesene (13.0percent), β-phellandrene (11.7percent), 2-nitrophenol (9.5percent), palatinol (8.4percent), geranyl acetate (7.7percent) and linoleic acid (7.4percent). The oils from the wild and cultivated sources showed significant (p<0.05-0.001) decrease in number of writhes induced by the acetic acid compared to vehicle; caused significant (p<0.05-0.001) delay in reaction time on the hot plate at 60 and 90 min post-treatment and significantly (p<0.05-0.001) reduced oedema size caused by the egg albumin injection compared to the vehicle. The oils from the wild plant showed more potency compared to the cultivated. The essential oils of wild and cultivated P. inquinans showed qualitative, quantitative and chemotaxonomic variation with analgesic and anti-inflammatory activity. These essential oils need to be explored for further biological analysis because of the major components they contain.
- Full Text:
- Date Issued: 2016
Sedimentology and shale gas potential of the Ecca Group, Karoo Supergroup in the Eastern Cape, South Africa
- Authors: Nemanashi , Tshisikhaiwe
- Date: 2019
- Subjects: Sedimentology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/14616 , vital:40023
- Description: The aim of the study was to establish a deeper understanding on the stratigraphy, sedimentology, petrology, organic geochemistry and diagenesis of the Ecca Group, and to provide new insight on the shale gas occurrence and potential of the Ecca Group, Karoo Supergroup in the southern Karoo Basin. The Ecca Group stratigraphy is divided into five formations from the bottom upwards, namely the Prince Albert, Whitehill, Collingham, Ripon and the Fort Brown Formations. The stratigraphy of the five studied stratigraphy’s formations is now sub-divided into two new different members each. These subdivision was based on field investigation of lithological features, sedimentary structures, facies characteristics and stratigraphic correlation points. Each member has been assigned a lithological name. Sixteen sedimentary facies have been identified in the study area and were subdivided into six distinctive facies associations (FA 1, FA 2, FA 3, FA 4, FA 5 and FA 6). Sedimentological characteristics of facies associations identified indicate that the Ecca Group sediments initially accumulated in a deep marine environment, progressed through turbidite, shallow marine and ended in lacustrine and deltaic environments. The stratigraphic succession of the Ecca Group constitutes a perfect regression sequence, indicating that the marine water gradually retreated and the sea-level gradually dropped. Grain size analysis was performed on twenty four Ecca Group sandstone samples. Statistical parameters of grain-size statistical parameters, linear discriminate functions, passega diagrams and bivariate analysis were used to reveal the hydrodynamic conditions and depositional environments. The results indicated that the Ecca Group sandstones are mostly fine to very fine grained, near-symmetrical, mesokurtic and indicative of dominance of low energy environments. The linear discriminate function analysis for the Prince Albert, Whitehill, Collingham and Ripon Formations samples indicates that the majority of the deposits were by turbidity currents all in a deep marine environment; whilst of the Fort Brown Formation samples are lacustrine/deltaic deposits. The depositional mechanism C-M plot indicates that majority of the Ecca Group sediments clustered in the PQ and QR field suggesting deposition mainly by suspension, rolling or saltation as well as graded suspension. Modal mineral composition analysis indicates that the main framework grains of the Ecca Group sandstones are quartz, feldspar as well as lithic fragments derived from metamorphic, igneous and sedimentary rocks with a few from volcanic origin. The Ecca Group sandstones iii are immature compositionally and can be classified as feldspathic wackes and lithic wackes. The QFL ternary diagram revealed a dissected and recycled orogen arc provenance; whereas QmFLt ternary diagram point to dissected arc and transitional arc sources to an active continental margin as well as recycled provenance. These provenance characteristics suggest a metamorphic and plutonic terrains influence as the main source rock with minor debris derived from recycled sedimentary rocks. The weathering diagram and semi-quantitative weathering index suggests that the sandstones from the Ecca are mostly from a plutonic source area under arid to humid climatic conditions. The detrital modal compositions of these Ecca Group sandstones are related to a strike-slip setting, back arc to continental margin setting. Diagenetic features of the Ecca sandstones and shales are subdivided into early, late (burial) and uplift-related diagenetic stages. Mechanical compaction, recrystallization, cementation, replacement and the dissolution of framework grains or cements are some of the main diagenetic processes that largely affected the Ecca sediments. Early diagenetic processes include cementation, point/planar contact, formation of pyrite, hematite cements and mineral inversions. Recrystallization, replacement, compaction, overgrowth, albitization, seritisation, illitization, concave-convex and suture contacts as well as dissolution took place mostly in the later diagenetic stage due to increase of temperature and pressure as burial depth increased. The uplift-related diagenetic stage was mostly affected by deformation and fracturing, calcitization, dissolution, erosion and weathering. Diagenetic processes largely affected the porosity and permeability of the reservoir rock properties of the Ecca Group. Organic geochemistry results indicate that the sediments were highly weathered and the TOC values ranging from 0.10 to 7.35 wt% with mostly less than 0.5%, which indicate the source rocks have poor oil potential. The majority of the Ecca Shales have HI values less than 50 mg HC/g, TOC indicating Type-IV kerogen mostly derived from reworked organic matter with very little hydrocarbon generation potential. The relatively high Tmax (oC) and vitrinite reflective values indicate that most shales are thermally over-matured thus they have low hydrocarbon pontential.
- Full Text:
- Date Issued: 2019
Sequencing, assembly and annotation of the mitochondrial and plastid genomes of Gelidium pristoides (Turner) Kützing from Kenton-on-Sea, South Africa
- Authors: Mangali, Sandisiwe
- Date: 2019
- Subjects: Gelidium -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/19109 , vital:39883
- Description: The genome is the complete set of an organism's hereditary information that contains all the information necessary for the functioning of that organism. Complete nuclear, mitochondrial and plastid DNA constitute the three main types of genomes which play interconnected roles in an organism. Genome sequencing enables researchers to understand the regulation and expression of the various genes and the proteins they encode. It allows researchers to extract and analyse genes of interests for a variety of studies including molecular, biotechnological, bioinformatics and conservation and evolutionary studies. Genome sequencing of Rhodophyta has received little attention. To date, no published studies are focusing on both whole genome sequencing and sequencing of the organellar genomes of Rhodophyta species found in along the South African coastline. This study focused on genome sequencing, assembly and annotation mitochondrial and plastid genomes of Gelidium pristoides. Gelidium pristoides was collected from Kenton-on-Sea and was morphologically identified at Rhodes University. Its genomic DNA was extracted using the Nucleospin® Plant II kit and quantified using Qubit 2.0, Nanodrop and 1% agarose gel electrophoresis. The Ion Plus Fragment Library kit was used for the preparation of a 600 bp library, which was sequenced in two separate runs through the Ion S5 platform. The produced reads were quality-controlled through the Ion Torrent server version 5.6. and assessed using the FASTQC program. The SPAdes version 3.11.1 assembler was used to assemble the quality-controlled reads, and the resultant genome assembly was quality-assessed using the QUAST 4.1 software. The mitochondrial genome was selected from the produced Gelidium pristoides draft genome using mitochondrial genomes of other Gelidiales as search queries on the local BLAST algorithm of the BioEdit software. Contigs matching the organellar genomes were ordered according to the mitochondrial genomes of other Gelidiales using the trial version of Geneious R11.12 software. The plastid genome was also selected following the same approach but using plastid genomes of Gelidium elegans and Gelidium vagum as search queries. Gaps observed in the organellar genomes were closed by amplification of the relevant gap using polymerase chain reaction with newly designed primers and Sanger sequencing. Open reading frames for both organellar genomes were annotated using the NCBI ORF-Finder and alignments obtained from BlastN and BlastX searches from the NCBI database, while the tRNAs and rRNAs were identified using the tRNAscan-SE1.21 vi and the RNAmmer 1.2 servers. The circular physical map of the mitochondrial genome was constructed using the CGView server. Lastly, in silico analysis of cytochrome c oxidase 3 and Heat Shock Protein 70 was performed using the PRIMO and the SWISS-MODEL pipelines respectively. Their phylogenies were analysed through Clustal omega and the trees viewed on TreeView 1.6.6 software. Qubit and Nanodrop genomic DNA qualification revealed A260/A280 and A230/A260 ratios of 1.81 and 1.52 respectively. The 1% agarose gel electrophoresis further confirmed the good quality of the genomic DNA used for library preparation and sequencing. Pre-assembly quality control of reads resulted in a total of 30 792 074 high-quality reads which were assembled into a total of 94140 contigs, making up an estimated genome length of 217.06 Mb. The largest contig covered up to 13.17 kb of the draft genome, and an N50 statistic value of 3.17 kb was obtained. The G.pristoides mitochondrial genome mapped into a circular molecule of 25012 bp, with an overall GC content of 31.04% and a total of 45 genes distributed into 20 tRNA-coding, 2 rRNAcoding genes and 23 protein-coding genes, mostly adopting the modified genetic code of Rhodophyta. The SecY and rps12 genes overlapped by 41 bp. This study presents a partial plastid genome composed of 89 (38%) fully annotated genes, of which 71 are protein-coding, and 18 are distributed among 15 tRNA-coding, 2 rRNA-coding and 1 RNaseP RNA-coding genes. Sixty-one (26%) partial protein-coding genes were predicted, while approximately 84 (36%) genes are not yet predicted. In silico analysis of the cytochrome c oxidase and heat shock protein 70 showed that the gene sequences obtained in this study and the resultant transcribed protein have sequences and structures that are similar to those from several other different species, thus validating the integrity of the genome sequences. This study provides genomic data necessary for understanding the genomic constituent of G.pristoides and serve as a foundation for studies of individual genes and for resolving evolutionary relationships.
- Full Text:
- Date Issued: 2019
Small-scale farmers' participation in planning and implementation of farmer support programmes in Amahlathi Local Municipality, Eastern Cape Province, South Africa
- Authors: Makunga, Phendulwa Zikhona
- Date: 2017
- Subjects: Agricultural development projects Farms, Small -- South Africa -- Eastern Cape Agriculture -- Economic aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/6248 , vital:29529
- Description: The democratic government in South Africa has brought about several policies which were initiated for rural development, and one of the government’s strategies was to involve the agricultural sector. Farmer Support Programmes (FSPs) were developed to assist small-scale farmers to become commercial farmers. The study looked at the participation of small scale farmers in the planning and implementation of the FSPs in the Amahlathi Local Municipality. 108 small scale farmers were selected using a non-random purposive probability and twelve farmers’ organisations. Semi-structured questionnaires and semi-structured interviews were used as the data collection tool and method respectively. The data analysis used was a descriptive analysis and a thematic analysis. The results revealed that the farmers have a positive perception towards the support programmes being helpful in their farming needs. The positive perception was especially on the extension and advisory services, dipping and vaccination programme, and the supply and funding of inputs and assets. However, the results revealed that there was no significant difference between gender and the perception of the farmers when a chi square test of association was performed. The results also revealed that the farmers and farmers’ organisations were not involved in the planning of the programmes by the government. It is therefore recommended that for the success of the FSP and for economic growth in the rural areas, the government has to avoid using a top-down approach when developing these programmes, and instead consult the farmers and the farmers’ organisations to know the specific needs of the farmers in their farming practices.
- Full Text:
- Date Issued: 2017
Smallholder farmers' selection criteria of maize varieties in Eastern Cape Province (Implications for adoption of GM maize) : the case of Port St. Johns, Flagstaff and Mqanduli
- Authors: Ngcinela, Siphokazi
- Date: 2018
- Subjects: Genetically modified foods
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/10178 , vital:35372
- Description: Different maize varieties are produced by smallholder farmers in Eastern Cape Province in different agro ecological zones. Government cropping programmes have been promoting the production of GM maize varieties by smallholder farmers to enhance food security. However, there is no evidence to show how smallholder farmers are selecting the maize varieties they want to produce. On the other hand, smallholder farmers are slowly adopting GM maize due to number of factors affecting them. The study adopted Cross sectional design to collect the data from smallholder farmers from the three study sites. The sample size was 704 respondents. A semi structured questionnaire was used to collect primary data from smallholder farmers in Mqanduli (Lowest rainfall), Flagstaff (moderate rainfall) Port St. Johns LM (highest rainfall), under OR Tambo DM. Multistage sampling was utilised. SPSS version 24 was used to analyse descriptive statistics and Multinomial logistic regression model. STATA version 13 was used to analyse Crag’s double hurdle model. The results showed that, farmers were producing GM maize (Ht and Bt), unimproved OPV (landrace) and improved OPV (Sahara). The majority of farmers were producing OPVs. The findings further showed that, the selection of GM maize varieties is positively related to maize threat stalk borer damage. The results indicated that, most of the respondents were not aware of the GM permit conditions thus, they failed to comply with the expected conditions. The following variables influenced the adoption and intensity of adoption of GM maize: gender, highest educational level, household size, employment status, access to land, access to market, access to credit, membership to farmers group, main source of income, farm size, and access to extension services. It was concluded that from the three study areas different maize varieties were produced. Adoption of GM maize was influenced by the number of factors. GM maize permit condition were not met by smallholder farmers. It was recommended that, research should be done on OPVs which are the most preferred varieties by smallholder farmers. Extension officers and those who are adopting GM maize should be educated and trained about GM maize permit conditions.
- Full Text:
- Date Issued: 2018