The jackal as a mesopredator : dietary response to an apex predator and role as an endozoochore
- Authors: Favaretto, Bianca Sashika
- Date: 2020
- Subjects: Jackal buzzard
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48313 , vital:40841
- Description: Interactions between apex predators, mesopredators and their impacts on trophic dynamics have been well documented. However, the influence of apex predators, through the provision of carrion, on the foraging ecology of African mesopredators is poorly understood. To investigate such resource supplementation by apex predators for mesopredators, the black-backed jackal Canis mesomelas, a generalist mesopredator, was used as a model species to improve our understanding of this topic in South African ecosystems. To do this, I compared the diet of jackal at replicated sites with and without cheetah in the eastern Karoo, South Africa. Scat samples were macroscopically categorized into six broad dietary categories: mammal, reptile, bird, fruit, forage and insect. Mammalian prey was further identified to species and grouped into six functional dietary categories: carnivore, large ungulate, small ungulate, small mammal, and unknown mammal. Jackal diets were dominated by mammal prey, with significant differences in the biomass and frequency of occurrence of mammals by jackal at sites with cheetah and without cheetah. Mammal consumption, showed limited variation amongst seasons. Resource supplementation provided by predator derived carrion is an important factor influencing jackal foraging ecology. The emergent hypothesis that jackal may show demographic responses (increased fecundity, survival, density) to this supplementation needs to be tested. This study also provided an opportunity to investigate the potential role of jackal as an endozoochore. Jackal consume fruits and their seeds, yet to our knowledge, an investigation into their seed dispersing abilities is yet to be investigated. This study assessed the viability and germination capacity of ingested seeds extracted from jackal scat samples using the tetrazolium tests and germination trials. Seed viability and germination of all three species (Grewia occidentalis, Pappea capensis and Diospyros lycioides) were significantly lower than uningested seeds. These results suggest that jackal gut passage is acting severely on ingested seeds. This study represents a novel investigation into differences in jackal diet in sites with and without cheetah as well as the role jackal play in endozoochory, contributing to improved understanding of the ecological role of jackal.
- Full Text:
- Date Issued: 2020
The kinetics and associated equilibria of high oxidation state osmium complexes
- Authors: McFadzean, Belinda Julie
- Date: 2007
- Subjects: Chemical equilibrium , Osmium , Chemical kinetics , Chemistry
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10371 , http://hdl.handle.net/10948/732 , Chemical equilibrium , Osmium , Chemical kinetics , Chemistry
- Description: The reduction of osmium tetroxide by a series of alcohols was studied spectrophotometrically. The reaction was observed to occur in two steps, unlike previously reported studies on this reaction. The identities of both reactants and products were established via a range of techniques. Equilibrium and kinetic data were gathered and reaction models were evaluated using equilibrium and kinetic modelling software. The following complexation reaction model emerged that simulates both the equilibrium and kinetic data. Os(VIII) + RCH2OHOs(VI) + RCHO2 Os(VIII) + Os(VI)k+2k1Complexk-2 Conditional rate constants and equilibrium constants were generated. Rate constants for the alcohol reactions were correlated with the Taft σ* constant. The ρ* value obtained (-1.4) is consistent with a hydride transfer mechanism coupled with synchronous removal of the hydroxyl proton. The identity of the osmium(VIII)-osmium(VI) complex has been suggested. Thermodynamic parameters were also reported. The rate constants for benzyl alcohol and 2-chloroethanol deviated from those predicted by the Taft plot. An explanation of enhanced resonance effects is offered for benzyl alcohol and an alternative reaction mechanism, involving proton abstraction, is offered for 2-chloroethanol. The reaction of the oxidation products of alcohols, namely ketones, with osmium tetroxide produced rate constants that were, perhaps surprisingly, far larger than those of the alcohols. A reaction mechanism for the oxidation of the ketones is suggested, which involves the enolate ion as the reactive starting reagent.
- Full Text:
- Date Issued: 2007
The kinetics and associated reactions of ruthenium(VIII)
- Authors: Van Aswegen, Werner
- Date: 2009
- Subjects: Ruthenium , Ruthenium compounds , Alcohols
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10392 , http://hdl.handle.net/10948/1130 , http://hdl.handle.net/10948/d1008611 , Ruthenium , Ruthenium compounds , Alcohols
- Description: This study investigated the reduction reaction of ruthenium tetroxide by various aliphatic alcohols in acidic medium. UV-Vis spectroscopy still plays an essential role in the analysis and study of volatile ruthenium tetroxide and was used in this study to collect kinetic data. This data was analyzed using graphical and computational methods, such as Mauser diagrams and kinetic simulation software. From the results obtained it is proposed that the reaction occurs by the following two-step reaction model: Ru(VIII) k1 Ru(VI) Ru(VI) k2 k-2 Ru(III) Molar extinction coefficients and conditional rate constants were calculated using kinetic simulating software and a hydride transfer mechanism was proposed. The temperature dependence of this reduction reaction was also investigated and thermodynamic parameters calculated. Ruthenium concentrations were determined using a method employing UV-Vis spectroscopy. The method proved to be a reliable, sensitive and simple technique.
- Full Text:
- Date Issued: 2009
The long term effects of fire frequency and season on the colophospermum mopane shrubveld of the Kruger National Park
- Authors: Lombard, Pieter Jacobus Lategan
- Date: 2003
- Subjects: Mopane tree -- Effect of fires on -- South Africa -- Kruger National Park
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: vital:10970 , http://hdl.handle.net/10948/257 , Mopane tree -- Effect of fires on -- South Africa -- Kruger National Park
- Description: Background : The recorded history of veld burning in the Kruger National Park (KNP) started with the appointment of Colonel James Stevenson-Hamilton as warden of the Park (then the Sabie Game Reserve) in July 1912 and can be divided into five periods: From 1912 to 1926, a haphazard, and indecisive burning policy was practiced, mainly due to the perception that fire was unfavourable for the environment and because the means to combat veld fires were very meagre. From 1926 to 1948, in which period it was realized that fire was not only unavoidable over a large area such as the KNP, but also actually desirable, necessary and beneficial when applied with circumspection. During this period the capability to successfully introduce and apply a definite fire policy did not exist. From 1948 to 1956, prescribed burning was not practiced, but a network of graded firebreaks was being established (to create burning blocks), and wild fires were actively combated. From 1957 to 1993, during which period a definite prescribed burning policy was practiced, amended several times, but basically consisting of a triennial rotational system where blocks were burned by management. All fires of non-management ignition sources were combated. From 1993 to the present, when a policy of allowing lightning-ignited fires to burn freely was introduced, and fires of human origin were suppressed. The shift away from a rigid prescribed burning programme was because of the concern that the dominance of grass species characteristic of over utilised veld was a result of too frequent burning (Potgieter, 2001). Lightning fires probably played just as an important role in shaping African savanna in pre-industrial times as anthropogenic fires caused by preindustrial man. The role of post-industrial man as far as its influence on the creation of savanna is concerned is probably negligible, but significantly important in the role of maintaining savanna, although probably not more so than that of lighting fires. Fires caused by postindustrial man becomes suspect as far as the creation of savanna is concerned, because instead of the mere burning of the veld for the pure reasons of survival as practiced by pre-industrial man, a measure of commercialism crept in (Potgieter, 2001). Fire management of the KNP in pre-industrial times can be regarded in the same light as that of post-industrial times. Although the motive for burning the veld in the KNP was beyond reproach, the underlying reasoning was not. Managers’ thinking was geared towards preventing so called “devastating fires”, laying to waste large areas of the Park, not realising that this was in actual fact nature going about its business in this ecosystem. They therefore devised a system of firebreak roads, which was gradually extended to the extent that we now have more than 4000 km roads that must be maintained. This was all in the cause of preventing or managing lightning and arson fires. Given the above, a revision of the veld fire policy was extremely necessary. The mission statement hammered out during the revising process in 1993 underscored and supported the proposal put forward in 1992, that lightning fires should be recognised as a legitimate and completely natural phenomenon in the Lowveld ecosystem. This had to be weighed against the prevailing practice of combating all fires caused by lightning and non-management anthropogenic sources of fire. The essence of this policy would therefore be to allow lightning-fires to burn to their full extent i.e. if vegetation conditions (available biomass) are such that large areas will burn, then such burns will be permitted to proceed to their full extent with the provision that no more than 50% of the management unit will be allowed to burn out (no matter what the ignition source) in a specific fire season (Potgieter, 2001).
- Full Text:
- Date Issued: 2003
The management of chacma baboons and humans in a peri-urban environment: a case study from Nelson Mandela Metropolitan University's George Campus
- Authors: Botes, Peet
- Date: 2016
- Subjects: Human-animal relationships , Animal behavior , Human beings , Bestiality
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/5135 , vital:20812
- Description: Conflicts between humans and baboons (Papio ursinus) have become a significant management challenge on Nelson Mandela Metropolitan University’s (NMMUs) George Campus, which is located in peri-urban George in the Garden Route, of the Western Cape of South Africa. Current management policy, although required to be ‘scientifically’ based, largely relies on studies done outside the Garden Route. This study addresses the question of how the management of human-baboon relations could be improved on the campus. A case study was undertaken which aimed at addressing the cohabitation of baboons and humans on the NMMU campus, specifically human-baboon resource selection and interaction. The research methodology and the related analytical tools were primarily quantitative but were supplemented by some qualitative data drawn from interviews. Data collected was used to determine landscape features acting as Keystone Resource Areas (KRAs) for both humans and baboons on the campus. Relationships between the frequency and location of negative interactions, and resident-baboon distribution on the campus were also determined. Two key findings emerged from the research. First, residences, non-residence buildings and waste disposal stations act as KRAs for both humans and baboons. Second, the frequency of negative interaction correlates with the time spent by residents and baboons at residences, where common negative interactions between baboons and humans are known to occur. It is postulated that cohabitation on the NMMU George Campus is causing the habituation of baboons, a loss of fear of humans and association of humans with high energy foods. As a result, present cohabitation contributes to negative human-baboon relations in the George area. To ensure sustainable co-existence between humans and baboons on the George Campus, management should implement zonation and wildlife monitoring to reverse the loss of baboon fear of humans and better limit the availability of human-derived foods. In addition, management should consider giving stakeholders co-management roles to foster and facilitate knowledge and responsibility partnerships, and subsequently correct any misunderstandings related to human-baboon relations on the campus. Recommendations for further research include sampling beyond campus boundaries to compensate for regional variations in baboon behaviour and the biophysical environment.
- Full Text:
- Date Issued: 2016
The management of extralimital giraffe (Giraffa Camelopardalis) in the mosaic thicket of Southern Cape, South Africa
- Authors: Cornelius, Andri Judith
- Date: 2010
- Subjects: Giraffe -- South Africa -- Eastern Cape , Giraffe -- Food -- South Africa -- Eastern Cape , Giraffe -- Ecology -- South Africa -- Eastern Cape , Animal behavior , Animal-plant relationships -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: vital:10749 , http://hdl.handle.net/10948/1345 , Giraffe -- South Africa -- Eastern Cape , Giraffe -- Food -- South Africa -- Eastern Cape , Giraffe -- Ecology -- South Africa -- Eastern Cape , Animal behavior , Animal-plant relationships -- South Africa -- Eastern Cape
- Description: The giraffe at Nyaru were found to be browsers who made little use of graze during the study period. They utilized a diversity of 20 browse species. Two species, Acacia karroo and Acacia cyclops, formed the bulk of the giraffe diet throughout the year. A definite seasonal dietary shift was evident. A. karroo was favoured in summer and autumn and formed the main food species in spring, summer and autumn. A. cyclops was favoured throughout the study, but its contribution to the diet increased during winter when less A. karroo was consumed. This seasonal shift is related to the deciduous nature of Acacia karroo. Although a seasonal shift in species contribution to giraffe diet has been observed in many other giraffe feeding studies, no studies on giraffe feeding have been done in the Mosaic Thicket of the southern Cape. The ecological browsing capacity for giraffe in thicket was estimated to be between 0.020 BU/ha and 0.095 BU/ha. The browsing capacity for giraffe at Nyaru, based on the available phytomass 2–5 m above the ground, was estimated using those species that formed the bulk of the giraffe diet, and amounted to 0.063 BU/ha. A maximum of three giraffe could thus be stocked on the 157 ha of suitable giraffe habitat on Nyaru. This stocking rate recommendation lies within the range commonly recommended by local consultants for giraffe introductions into the southern Cape. Their recommendations are, however, not based on quantitative assessments such as performed in this study. The recommendation of this study should not be applied as a fixed ecological capacity for giraffe in thicket, but should be seen as a starting point in the adaptive management cycle. Ongoing monitoring of parameters, such as herbaceous composition and phytomass; as well as the condition of key browse species, is strongly advocated. A. karroo was browsed significantly more and carried significantly fewer pods per tree at a heavily used site compared to a lightly used site. Heavy browsing thus appears to affect the reproductive success of A. karroo significantly. Fewer pods are likely to lead to lower regeneration and thus reduced density of A. karroo. Whether A. karroo will maintain its dominance within the thicket vii community in the long run will be related to how individual plants survive and reproduce and if some can escape from herbivory. Fewer G. occidentalis were clumped with other species at the heavily used site compared to the lightly used site. This could possibly be attributed to the fact that intense browsing pressure at the heavily used site caused protective clumps to be eaten away, thus exposing G. occidentalis to higher ungulate browsing. Previous studies have found that nurse shrubs protect G. occidentalis against ungulate browsing. G. occidentalis was browsed significantly more at the heavily used site compared to the lightly used site. There was a general trend of fewer fruits at the heavily used site compared to the lightly used site, while fruits were absent on G. occidentalis growing alone at the heavily used site. This suggests a negative effect of heavy browsing on plant reproductive success and emphasizes the importance of nurse plants for the successful recruitment and hence long term prevalence of G. occidentalis in Mosaic Thicket.
- Full Text:
- Date Issued: 2010
The mangroves of Mozambique: pathways to conservation through integrated management
- Authors: Macamo, Célia , Bandeira, Salomão
- Date: 2018
- Subjects: Mangrove ecology -- Mozambique , Mangrove conservation -- Mozambique
- Language: English
- Type: Thesis , Doctorate , Dphil
- Identifier: http://hdl.handle.net/10948/30843 , vital:31182
- Description: This study analyses the status and management of mangroves in Mozambique and how the management system addresses the threats to mangrove conservation. A comprehensive analysis of the country forest condition and management status was conducted based on a literature review and informal interviews with key informants. GIS and remote sensing techniques combined with groundtruthing were used to assess the impact of natural and human threats on mangroves based on changes in NDVI (Normalised Difference Vegetation Index) and cover area. These studies were conducted at the Save River and Cabo Delgado province, respectively. Structural data of the mangrove forest were collected during field visits to assess changes in structural parameters and compare impacts in different forests or locations within the same forest. Finally a community-based management system in Nhangau (Sofala province) was analysed in order to assess the efficacy as a management tool to meet mangrove conservation objectives. Mozambique has an estimated mangrove cover area of 3 054 km2. In general there is a trend of decrease in cover around major human settlements, while remote areas show an increase in cover as documented in Maputo Bay (175.96 km2, decreasing within Maputo town) and Zambezi Delta (370.34 km2, increasing), respectively. Mangroves are mostly used for wood resources, salt production and fishing grounds. However, urban development, saltpans, logging and natural phenomena such as floods and cyclones are a threat to these systems. Mozambique has 27% of its mangroves protected in conservation areas. At places like the Quirimbas National Park, this protection is not effective due to illegal cutting and poor enforcement. The Mozambican institutional and legal frameworks provide protection to mangroves at all levels and prohibit all forms of degradation and unsustainable use. However law enforcement and institutional functioning is weak. There is also a need to update the legislation by adding specific aspects related to mangroves, such as regulating invertebrate collection and defining customary use. At the Save River changes in NDVI indicated that 63.42 km2 of mangrove (47.8%) were affected by cyclone Eline. Field investigations 11 years after the cyclone showed that there was substantial recovery in the protected creek forest but changes in sedimentation prevented recovery in the seaward sites that are exposed to storm surges and wind. This study highlighted the necessity for field based investigations in addition to remote sensing as results showed site specific differences. The percentage of living trees at the creek forest ranged from 71 to 97% from the outer to inner forest. Also species density was higher at the creek sites from the outer (101 ± 63 tree/ha) to inner forest (488 ± 111 trees/ha) as was the complexity index (0.09 to 0.25 respectively). At the seaward forest the percentage of living trees increased from 0 to 79% from the outer to inner forest. Seedlings (up to 40 cm height) dominated the understory throughout the forest however the outer edge of the seaward forest had no regeneration at all. This forest recovered naturally from the cyclone, however it is important to maintain low exploitation levels to ensure forest resilience in case of similar future impacts. The frequency and intensity of cyclones is expected to increase with climate change and thus the results can contribute to management strategies and climate change adaptation plans. 3 Human impacts were investigated at a peri-urban, rural and island setting in Cabo Delgado province. It was hypothesized that peri-urban forests would be more impacted. However an analysis of LandSat images showed that mangrove cover at the peri-urban site actually increased by 22.7% between 1991 and 2013; while rural forests lost 23.2% of its area during the same period. Field studies showed that there was no significant difference between average tree density for the different sites (p= 0.16) and the low complexity indices indicated young disturbed forests. At the peri-urban and rural sites, the tree diameter class 5.1-8 cm was targeted for extraction, while at the rural island all size classes were targeted. The proportion of stump:living trees was 1:11 at the peri-urban site; 1:9 at the rural site and 1:4 at the rural island. Most of the standing trees were crooked and not suitable for building purposes. The small extractive use of mangroves at the peri-urban site could be related to the fact that the dominant ethnic group has kept its essentially agricultural habits while at the rural site the people are typically fishermen and marine invertebrate collectors that rely on mangroves and marine resources for their livelihoods. Proposed management measures for these sites include raising awareness at all sites and conducting mangrove restoration at the peri-urban (abandoned saltpans and aquaculture farm) and rural sites. A community-based management system at Nhangau (Sofala province) was analysed in order to assess how this has achieved management conservation objectives. After facing several impacts due to mangrove degradation, the community of Nhangau engaged in mangrove replanting and management. The main management actions were (1) reduction of extractive uses, (2) continuous awareness and mangrove planting and (3) law enforcement. The restoration interventions started in the late 1990s by the local government in partnership with the local community and NGOs. Currently (2018), most of the activities are led by the local Natural Resources Management Committee (NRMC). Ten hectares of mangrove were planted between 1996 and 2017, and according to the local community the restored areas are already providing important ecological services such as temperature regulation. There are several challenges such as, limited functionality of the NRMC and its interaction with other stakeholders, Government representatives and local NGOs. There is also a lack of alternative livelihoods for mangrove cutters and the wider Nhangau community. Improvements to the system include better integration of local government representative structures with the civil society organizations (NGO and NRMC), law enforcement, financing of the appropriate sustainable use practices, environmental awareness and education and the promotion of appropriate NRMC functionality and representation. With these improvements this community-based management system can be effective as a management tool to meet mangrove conservation objectives and serve as a replicable model for other parts of the country. In conclusion, this research has documented both anthropogenic and climate-related impacts on mangroves in Mozambique and highlighted options for mangrove management focusing at strengthening the community –based management of mangroves in rural sites. Mangrove management would improve significantly by strengthening the legislation on specific mangrove issues combined with law enforcement and better community organization and their training and sensitization to manage mangrove resources at the local level. Such actions will increase the resilience of forests, allowing sustainable use and faster recovery in case of impacts by either anthropogenic or natural factors such as cyclones.
- Full Text:
- Date Issued: 2018
The medicinal chemistry of selected halogenated diketopiperazines CYCLO(CIS-PRO-4F-PRO) and CYCLO(L-PHE-4I-VAL)
- Authors: Dakada, Vuyokazi
- Date: 2019
- Subjects: Medicinal plants , Drug development Cells -- Effect of drugs on
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39370 , vital:35221
- Description: Generally, peptides are selective and efficacious compounds; as a result, they are the best candidates for drug discovery and development. Most peptide-based drugs have been approved for clinical use. The 2,5-Diketopiperazines (DKPs), also known as cyclic dipeptides, are simple compounds which come from nature. Many DKPs are extracted from animals and plants. For example, cyclo(Proline(Pro)-Leucine(Leu)), cyclo(Proline-Valine(Val)), cyclo(Proline-Phenylalanine(Phe)) etc. In this study cyclo(cis-Proline(Pro)-4F-Proline(Pro)) and cyclo(L- Phenylalanine(Phe)-4I- Valine (Val)) were synthesized from their linear esters using a method modified by Milne et al. (1992). This method yielded good results. However, cyclo(L-Phe-4I-Val) degraded due to physicochemical stability attributes caused by hygroscopicity and photosensitivity. Quantitative analysis and evaluation of physicochemical properties of each dipeptide was achieved by using scanning electron microscopy, thermal analysis (differential scanning calorimetry and thermogravimetric analysis) and X-ray powder diffraction. To determine the purity of the cyclic dipeptide, high performance liquid chromatography and thin layer chromatography was used. The structural elucidation of the cyclic dipeptides was carried by employing infrared spectroscopy, mass spectrometry, nuclear magnetic resonance spectroscopy and, molecular modelling and computational chemistry. The aim of this research was to discover possible biological activity of cyclo(cis-Pro-4-F-Pro) and cyclo(L-Phe-4I-Val) with respect to their antimicrobial, anticancer, anti-diabetic and haematological effects. Cyclo(cis-Pro-4Fluoro-Pro) had no inhibitory effect on the antimicrobial strains tested, and cyclo(L-Phe-4Iodo-Val) could not be tested as the compound decomposed.
- Full Text:
- Date Issued: 2019
The medicinal plant Sutherlandia Frutescens regulates gene expression to reverse insulin resistace in rats
- Authors: Fortuin, Melissa
- Date: 2013
- Subjects: Insulin resistance , Medicinal plants , Genetic regulation , Insulin resistance -- Animal models
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10349 , http://hdl.handle.net/10948/d1020823
- Description: Obesity can lead to Type 2 Diabetes, both conditions increase in association with physical inactivity and high-energy diets, resulting in elevated blood glucose, decreased insulin sensitivity and increased insulin resistance. Sutherlandia frutescens (S.frutescens), an anti-diabetic plant, reverses and prevents insulin resistance in a rat model and human cell culture model. Gene expression analysis in hepatocyte cultures, identified genes down regulated in insulin resistance and up regulated by S.frutescens. These included genes encoding vesicle transporter proteins, hypothesised to be linked to hepatic lipid accumulation and lipid droplet formation during insulin resistance. The aim of this study was to investigate critical genes involved in lipid droplet formation, vesicle assembly and transport in high fat diet (HFD)-induced insulin resistant rat liver tissue during the development of insulin resistance and the reversal of these changes by S.frutescens. Rats were fed a low fat diet (LFD) or HFD supplemented with S.frutescens for 2, 4 and 8 weeks. Rats fed a HFD for 12 weeks developed insulin resistance, confirmed by plasma glucose and insulin levels (compared to normal controls). Groups of these rats were gavaged with S. frutescens (50mg/kg BW), Metformin (13mg/kg BW) or water for a further 4 weeks and starved for 12 hours, anaesthetized and blood removed by heart puncture. Liver was stored in RNA-Later™ for qRT-PCR and snap-frozen in liquid nitrogen for western blotting and confocal microscopy analysis. Changes in expression of vesicle transporter genes VAMP3 and NSF were analysed by qRT-PCR and changes in the protein expression by western blotting analysis. Proteins were localised within the liver by confocal immunohistochemistry using ZEN lite™ software. Statistical analysis was performed using One-Way ANOVA and unpaired t-test. mRNA gene expression of vesicle transport components VAMP3, NSF and SNAP25 showed relatively moderate changes with considerable individual variation within control or experimental groups. Uncorrelated changes in mRNA and protein products were found and may be due to differential regulation by siRNA. Proteins also showed altered staining patterns in high fat diet rats that reverted towards normal on S. frutescens treatment, potentially reflecting functional changes associated with transport of lipid-filled vesicles.
- Full Text:
- Date Issued: 2013
The metabolism and environmental fate of the cyanobacterial neurotoxin Beta-N-methylamino-L-alanine
- Authors: Downing, Simoné
- Date: 2015
- Subjects: Cyanobacteria , Neurotoxic agents
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/4225 , vital:20569
- Description: The neurotoxic amino acid β-‐N-‐methylamino-Lalanine (BMAA)is present in environmentally ubiquitous cyanobacteria and bioaccumulates and biomagnifies within the environment. The implication of BMAA in the development of neurodegenerative disease has raised concerns over the potential risk of human exposure to this neurotoxin, and has focussed attention on identifying possible routes of exposure that include direct contact with cyanobacteria and the ingestion of BMAA-‐containing plant and animal products.
- Full Text:
- Date Issued: 2015
The mining and visualisation of application services data
- Authors: Knoetze, Ronald Morgan
- Date: 2005
- Subjects: Data mining -- South Africa , Computer algorithms , Network performance (Telecommunication) -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10480 , http://hdl.handle.net/10948/451 , Data mining -- South Africa , Computer algorithms , Network performance (Telecommunication) -- Research -- South Africa
- Description: Many network monitoring tools do not provide sufficiently in-depth and useful reports on network usage, particularly in the domain of application services data. The optimisation of network performance is only possible if the networks are monitored effectively. Techniques that identify patterns of network usage can assist in the successful monitoring of network performance. The main goal of this research was to propose a model to mine and visualise application services data in order to support effective network management. To demonstrate the effectiveness of the model, a prototype, called NetPatterns, was developed using data for the Integrated Tertiary Software (ITS) application service collected by a network monitoring tool on the NMMU South Campus network. Three data mining algorithms for application services data were identified for the proposed model. The data mining algorithms used are classification (decision tree), clustering (K-Means) and association (correlation). Classifying application services data serves to categorise combinations of network attributes to highlight areas of poor network performance. The clustering of network attributes serves to indicate sparse and dense regions within the application services data. Association indicates the existence of any interesting relationships between different network attributes. Three visualisation techniques were selected to visualise the results of the data mining algorithms. The visualisation techniques selected were the organisation chart, bubble chart and scatterplots. Colour and a variety of other visual cues are used to complement the selected visualisation techniques. The effectiveness and usefulness of NetPatterns was determined by means of user testing. The results of the evaluation clearly show that the participants were highly satisfied with the visualisation of network usage presented by NetPatterns. All participants successfully completed the prescribed tasks and indicated that NetPatterns is a useful tool for the analysis of network usage patterns.
- Full Text:
- Date Issued: 2005
The molecular analysis of the interation surface between sCD23 and the B2-integrins, CD11b & CD11c
- Authors: Pereira, Melanie Claire
- Date: 2012
- Subjects: CD23 antigen , Immune response -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10337 , http://hdl.handle.net/10948/d1014734
- Description: Both CD23 and the β2 integrins (also known as CD11/CD18) have very important immunological functions, especially during the allergic response where the binding of CD23 to β2 integrins contributes to various types of signalling in monocytes which can result in drastic sensitivities experienced by some allergic individuals. CD23, also known as the low affinity receptor for immunoglobulin E or (FcεRII), is a type II transmembrane glycoprotein which is synthesized by haematopoietic cells and has biological activity in both membrane-bound and freely soluble forms. It acts via a number of receptors, including the β2 integrins. β2 integrins are specifically found on leukocytes and they play important roles in cell–cell or cell–matrix adhesion via their ability to bind multiple ligands. These molecules occur as heterodimers consisting of an alpha (α) and beta (β) subunit. The α-subunits of β2 integrins contain an approximately 200-amino-acid inserted domain or I-domain which is implicated in ligand binding function. There are four different types of β2 integrins, namely CD11a, CD11b, CD11c and CD11d, all dimers with the common beta subunit, CD18. CD23 and CD11/18 are natural ligands of each other; however the interaction site for CD23 is unknown. It is postulated that the integrin recognizes a tripeptide motif in a small disulfide-bonded loop at the N-terminus of the lectin head region of CD23, which is focussed around Arg172, Lys173 and Cys174 (RKC). This study thus focused on the interaction between the I-domain of CD11 (b and c) and a recombinant 25kDa construct of sCD23. In order to understand the characteristics of ligand binding between the relevant proteins of interest, alanine substitutions on the RKC motif of CD23 were made via site-directed mutagenesis. Consequently, a recombinant form of the I-domain of CD11 (b and c) as well as a wild type (containing the RKC motif) and mutant form (containing an AAC motif) of sCD23 were expressed and purified. The CD11 recombinant proteins were purified via affinity chromatography and the CD23 recombinant proteins via gel filtration chromatography. In addition, synthetic (CD23 derived) peptides, one containing the RKC sequence and the other the AAC sequence, were designed and custom synthesized. The synthetic peptides as well as the recombinant CD23 proteins were then analyzed for their interaction with the CD11 I-domain via ELISA. Subsequent ELISA analyses showed that the native sCD23 and the RKC peptide were able to bind to the integrin α I-domain whereas the mutant sCD23 and the corresponding synthetic AAC peptide failed to bind. This interaction was also analysed via flow cytometry using differentiated U937 cells, yielding similar results. ELISA analyses for the sCD23-CD11b I-domain interaction showed a Kd of 0.36 ± 0.14 μM whereas the RKC-CD11b I-domain interaction yielded a Kd of 1.75 ± 0.58 μM. Similarly, the sCD23-CD11c I-domain interaction yielded a Kd of 0.39 ± 0.09 μM and 1.53 ± 0.72 μM for the RKC-CD11c I-domain interaction. Peptide inhibitory analysis, analysed via ELISA and flow cytometry, reinforced the fact that the RKC motif on sCD23 is a prerequisite for ligand binding of the CD11b/c I-domain.
- Full Text:
- Date Issued: 2012
The past and present limnology of the Soetendalsvlei wetlands, Agulhas coast, South Africa
- Authors: Gordon, Nuette
- Date: 2012
- Subjects: Limnology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10619 , http://hdl.handle.net/10948/d1009430 , Limnology -- South Africa
- Description: As climatic conditions continue to change globally, there is a need to assess past environmental change in relation to changing water balance, temperature and sea-level. By understanding the extent of past environmental change, and how anthropogenic impacts have affected ecosystems, better and more accurate future predictions of change can be made. Through the use of the sedimentary record within coastal wetlands, geochemical, (organic content and stable isotopes) and biological (diatoms) proxies were utilised to determine; (i) the baseline water quality record for Soetendalsvlei, one of only a few coastal lakes in South Africa, (ii) the effect of agriculture and mouth manipulation of the Heuningnes Estuary on the microalgae ecology and (iii) the link between palaeo-salinity and trophic status on a regional basis between Soetendalsvlei and Groenvlei, situated 320 km apart. Present water quality and phytoplankton biomass and community structure were assessed for Soetendalsvlei and its associated wetlands, Voëlvlei and Waskraalsvlei to determine the current health of these systems and to obtain modern diatom analogues to be used in the palaeolimnological reconstruction of the coastal lake. Diatoms were not dominant during this study period. Chlorophytes and flagellates were the dominant phytoplankton groups throughout the different wetlands. With the exception of Voëlvlei, the wetlands were all in good health, although SRP concentrations were within the eutrophic to hypertrophic range and are cause for concern. In Voëlvlei, phytoplankton biomass was within the eutrophic range with chlorophyll a concentrations ranging between 20 – 400 ug.l-1 Cyanobacteria, a further indicator of eutrophic conditions, were dominant during the warmer summer periods. Rainfall and freshwater inflow had a significant effect on the biomass and composition of the phytoplankton and acted as a resetting mechanism for all the wetlands as water quality conditions improved thereafter. Comparisons of the water quality and phytoplankton community between the upper reaches of the Heuningnes Estuary and Soetendalsvlei, indicated that artificial breaching of the estuary mouth significantly impacted the connectivity between these two systems, with marine intrusion extending into the upper reaches, while freshwater conditions dominate in the coastal lake. Unfortunately for the palaeolimnological study diatom preservation was poor, however, geochemistry and stable isotope analyses did provide adequate evidence of marine transgression (~8000 yr BP and 4000-2000 yr BP) and regression events comparable to other South African sea-level models developed for the east and west coast. High organic matter content (i.e. higher trophic state) and estuarine POC (C4 vegetation) were associated with periods of marine regression, i.e. increased freshwater, whereas marine transgression events were associated with low organic content and marine POC and DOC. This is comparable to studies conducted in Uruguay (South America) where palaeo-salinity was related to trophic status, i.e. increased freshwater input was associated with high nutrients. Comparisons of the palaeo-record with recorded historical occurrences of droughts and floods, also provided a means of assessing the sedimentary record and to infer anthropogenic impacts after 1850 AD. Overall it can be concluded that coastal lakes of both continents in the Southern Hemisphere displayed similar trophic responses to sea-level fluctuations during the Holocene. This adds valuable information to global sea-level change models.
- Full Text:
- Date Issued: 2012
The photodecomposition of different polymorphic forms of 1,4-dihydropyridine channel blockers
- Authors: Francis, Farzaana
- Date: 2011
- Subjects: Photodegradation , Nifedipine , Nimodipine , Dihydropyridine
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10378 , http://hdl.handle.net/10948/1496 , Photodegradation , Nifedipine , Nimodipine , Dihydropyridine
- Description: 1,4-Dihydropyridines (DHPs) are a classification of compounds used as calcium channel blockers in the treatment of various conditions. These compounds readily undergo photodegradation. The degradants produced have no pharmaceutical activity and render the drugs ineffective. DHPs also exhibit polymorphism. Nifedipine and Nimodipine are two such drugs. This study aimed to monitor the photodegradation of these two drugs and to establish the effect of particle size, polymorphism and β-Cyclodextrin (β-CD) on the rate of photodegradation. Different polymorphs (namely the amorphous and stable crystalline polymorphs) of the two drugs were prepared for use in the study. Mixtures of each drug with β-CD were also prepared for photostability studies. The mixtures were prepared in a 1:1 molar ratio. The rate of photodegradation was studied with a 500 W metal halide lamp in accordance to ICH guidelines. The study employed samples on a small scale where degradation was analysed with High Performance Liquid Chromatography, and also samples on a larger scale where degradation was monitored with Powder X-ray Diffraction. The two sets of results of observing the degradation process by two analytical techniques where compared in terms of their quantification methods. The extent of photodegradation was suitably modelled and fitted using the Avrami-Erofeyev kinetic equation. Smaller particle size showed increased photodegradation for Nimodipine; the effect was insignificant for Nifedipine however. For both drugs it was found that the amorphous polymorph underwent faster photodegradation. The study showed that β-CD caused an increase in photodegradation for both drugs under these experimental conditions.
- Full Text:
- Date Issued: 2011
The potential impacts of hydraulic fracturing on Khoisan peoples’ sense of place: in the case of Karoo Region, South Africa
- Authors: Tembe, Thandeka
- Date: 2022-04
- Subjects: Hydraulic fracturing--Environmental aspects--South Africa--Eastern Cape , Khoikhoi (African people) -- History
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55701 , vital:53408
- Description: Hydraulic fracturing is a practical solution to minimising production of fossil fuels and to boost the South African economy. However, this development comes at a cost to the society, environment and heritage of the Karoo, which is home to majority of the Khoisan community. Developments such as hydraulic fracturing are barely understood by local communities therefore this study tried to determine the potential impacts of hydraulic fracturing on Khoisan people’s sense of place in the Karoo region, to also establish their perceptions, attitudes, opinion and knowledge on hydraulic fracturing, to facilitate and improve understanding. A mixed method approach was employed to gather relevant information from participants. The qualitative data collection used semi structured interviews to gain participants perceptions, attitudes, opinions and knowledge on hydraulic fracturing, whereas quantitative used questionnaire survey which was administrated to gain socio-demographics and sense of place of Khoisan people (N=50) using survey based psychometric approach to examine the relationship between Khoisan people and sense of place on proposed hydraulic fracturing in the Karoo region (Cradock). Primary data was employed to gain in depth raw data directly from participants and secondary data from literature that already exists. The purposive and snowball sampling technique was used to draw Khoisan participants from the Karoo region (Cradock). Data acquired was analysed using SPSS v26 and Microsoft excel. The results concluded that most Khoisan participants (N= 43) are not aware of what hydraulic fracturing is and therefore there is a need to be taught about the development. The (N= 7) of the participants who have an idea of what hydraulic fracturing is had attended a workshop that was facilitated by the AEON research institute, others learnt about it on the internet and others were informed by someone who either learnt from the internet or attend the workshop. The study also concluded that the Khoisan people have a strong positive sense of place (α= 0.922) with the Karoo region therefore going ahead with the proposed hydraulic fracturing will cause massive damage and could possibly lead to solastalgia and loss of sense of place. vi The recommendation of the study was to involve all stakeholders who will be part of the development of hydraulic fracturing from government, research institutes to oil and gas companies to thorough research, educate and inform local communities in the Karoo. Therefore, it is essential for the government to protect the Karoo culture and heritage, local peoples sense of place by communicating with local communities on such development and assist in holding these companies reliable for any misconducts. , Thesis (MSc) -- Faculty of Science, Environmental Geography, 2022
- Full Text:
- Date Issued: 2022-04
The potential of Raman spectroscopy in distinguishing between wool and mohair fibres
- Authors: Notayi, Mzwamadoda
- Date: 2020
- Subjects: Textile fabrics , Textile fibers -- Mechanical properties Wool -- Dissertations Mohair -- Dissertations
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/49248 , vital:41614
- Description: The possible application of the FT Raman, Raman micro-spectroscopy and ATR-FTIR micro-spectroscopy, have been investigated for distinguishing between wool and mohair. Highly identical Raman and FTIR spectra were obtained from the two fibre types, indicating that indeed they share similar basic molecular structural chemistry. The analysis of the amide I through curve fitting of wool and mohair FT Raman spectra showed that the protein and polypeptide secondary structure exists mainly in the α-helical structural conformation with smaller proportions of β-pleated sheet and β-Turns. These proportions, however, could not be used to distinguish between wool and mohair, due to the significant overlap observed between the two fibres. This study also determined the disulphide contents for possibly distinguishing between wool and mohair fibres, with the average and standard deviation values of 0.20±0.04 and 0.17±0.03 for wool and mohair, respectively, being found. Despite the mean values being found to differ statistically significant (p<0.05), a considerable overlap was observed, posing a doubt in the possible application of the method for distinguishing between the two fibres and blend composition analysis of the two fibres. The application of ratiometric analysis, based on the relative peak heights of certain FT Raman bands, showed that a combination of ratios A (I2932/I1450) and D (I508/I1450) could hold great potential in distinguishing between wool and mohair fibre samples. The individual values of ratios A and D varied a great deal from one mohair sample to the other and even more from one wool sample to another, with the individual values for ratio A ranging from 2.71-3.68 and 2.35-3.08 for wool and mohair, respectively, while ratio D ranged from 0.18-0.32 and 0.17-0.22 for wool and mohair, respectively. An important observation from this study is that if, for an unknown sample, if individual values of ratios A and D exceed 3.1 and 0.22, respectively, are found then the sample is most likely to be either a pure wool or blend of wool and mohair, whereas if all the values fall below the two threshold values, then the unknown sample can be declared a pure mohair sample. A Raman spectral database or library of approximately 100 high quality Raman average spectra of wool and mohair fibres has been established for the Bruker 80V FTIR/Raman spectrophotometer at the Nelson Mandela University (NMU). Although this has not been fully validated due to the unforeseen frequent breakdown encountered with the FT Raman system, at this stage, it has been realized that verification of unknown materials is highly possible. A great need for the development of a classification model based on multivariate or chemometrics has been realized. An ATR-FTIR LUMOS micro-spectroscopic system was also investigated for the possible application in distinguishing between wool and mohair single fibres. The amide I/II band ratios were determined for both wool and mohair fibres to distinguish between the two fibre types. The mean and standard deviation values of 1.20±0.02 and 1.21±0.01 for mohair and wool, respectively, were found and were shown not to differ statistically significant (p˃0.05). The secondary structure analysis showed that the content of the α-helical secondary structure might be different between the two fibre types, with a great overlap of individual values, however, being observed between the two fibre types (wool and mohair), raising concerns in the possible application of the α-helical content for distinguishing the two fibres.
- Full Text:
- Date Issued: 2020
The prediction of, and changes in,medullated fibre levels when processing mohair into top
- Authors: Van Zyl, Andreas Marius
- Date: 2019
- Subjects: Mohair Industry -- South Africa , Textile Fibers Testing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/45767 , vital:38962
- Description: The prediction of, and changes in, medullated fibre levels during early stage processing of mohair, from greasy to top, have been studied. Commercial lots, representative of the South African and Basuto mohair clips, covering a wide range of properties, with respect to objectionable medullated (kemp type) fibres, length and fibre diameter, were sampled for testing at three different processing stages, viz. greasy, preparatory gilled sliver, and top. All samples were tested with an Optical Fibre Diameter Analyser (OFDA100) for medullated- and fibre diameter related properties. Various statistical analyses were conducted to determine the most significant correlations and best prediction of changes in medullated fibre levels, during processing. As expected, the medullated fibre levels of the Basuto lots were much higher than those of the Cape lots. Moreover, the inclusion or exclusion of flat fibres, in combination with other medullated fibres, resulted in significant differences in the outcome of some of the statistical analysis. It was found that flat fibre levels were highly correlated with the standard deviation of fibre diameter at all processing stages, and also, the greasy standard deviation of fibre diameter was the best predictor of flat fibre levels in the top. Further, the percentage reduction in flat fibres, from greasy to preparatory gilled sliver, was more than double that of the reduction in flat fibres from preparatory gilled sliver to top. Similarly, the percentage reduction in objectionable medullated (including flat) fibres, from greasy to preparatory gilled sliver, was about 1.7 times more than that of the reduction from preparatory gilled sliver to top.
- Full Text:
- Date Issued: 2019
The production of Omega 3 fatty acids by a mixed microalgae culture
- Authors: Kimono, Diana Agnes
- Date: 2013
- Subjects: Omega-3 fatty acids , Algae culture , Microalgae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/6498 , vital:21097
- Description: Background and Aim: Microalgae are a potential economical source of omega-3 fatty acids, which are known for their health benefits. Omega-3 fatty acids derived from microalgae are however still expensive due to high costs involved in production. These costs can partly be attributed to cultivation of microalgae in unialgal cultures, which are prone to contamination, difficult to scale up and require stringent control of growth conditions. This study therefore is aimed to investigate the feasibility of using a mixed microalgae culture for the production of omega-3 fatty acids. Methods and materials: The microalgae were grown under uncontrolled conditions in a hanging-bag photo-bioreactor, with only the phosphorus-nitrogen ratio (P:N-ratio) varied. Variations in the different population proportions in the culture were studied and related to the biomass, total fatty acid and omega-3 fatty acid productivity of the culture. Finally, a comparison was made between the results obtained in this study and similar studies found in literature. Results and discussion: The mixed culture used was composed of several green microalgae, whose proportions varied with P:N-ratio, season, and age of the culture. Different interactions between the populations were observable, and these were thought to influence the culture’s biomass, total fatty acids (TFAs) and omega-3 fatty acid productivity. The TFA content of the culture was ~10-20% by the end of the exponential phase, depending on the nutrients supplied. The fatty acids were composed of mostly unsaturated fatty acids, the majority of which were omega-3 fatty acids; C18:3ω3 (up to 50% of TFA), C16:4ω3 (up to 15%) and C18:4ω3 (up to 5%). Other fatty acids observed included C16:0 (up to 25%), C18:1ω9/C18:1ω8 (up to 20%), C18:2ω6 (up to 5%), traces of C18:0, C18:3ω6, C17:0, C16:3ω3 and C16:1ω7 were also detected. The presence of these fatty acids was found to vary depending on season, P:N-ratio, and age of the culture. When compared to studies in the literature, the mixed culture was found to perform better than, or as well as reported studies, where unialgal cultures were cultivated under controlled laboratory conditions. Conclusion: In view of the reported advantages of cultivating mixed cultures, the production of omega-3 fatty acids via such cultures appears attractive. More research however is needed to optimise the culture; study interactions between the organisms and their effect on biomass, total fatty acid and omega-3 fatty acid productivity. Finally, the economic implications of using mixed cultures need to be evaluated as well.
- Full Text:
- Date Issued: 2013
The profile of local hunters in South Africa
- Authors: Du Plessis, Madelaine Patricia
- Date: 2020
- Subjects: Hunters -- Economic conditions -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48324 , vital:40847
- Description: The South African hunting industry, but more specifically local hunting, is regarded as one of the key sectors within South Africa’s wildlife industry – not only for the significant economic contribution it makes, but also from an equally vital conservation point of view. Despite this, local hunters are neglected in the sense that hunting accommodation and hunting packages provided by the majority of game ranches mainly focus on accommodating trophy hunters. This study investigated the profile of local hunters in South Africa. The objectives of this study were the following: establishing the factors which determine the profile of local hunters and then comparing the results to existing information, as well as identifying the economic contribution local hunters make towards South Africa’s economy. The study commenced with a literature review of existing research on the local hunting industry and on the profile of local hunters. Thereafter, a self-administered questionnaire was developed and conducted amongst active local hunters via the CHASA hunting confederation website, by means of which the primary data for the current study were collected. The study concluded that the profile of the South African local hunter has undergone slight changes from what previous research had established. This was attributed to several external as well as internal factors. The current research would assist hunting farms in approaching the local hunting sector with up-to-date information in order to accurately tailor their packages and marketing in line with the evidence presented in this dissertation regarding the changes in the profile of the South African local hunter.
- Full Text:
- Date Issued: 2020
The quantification of Pinus patula recovery and productivity of manually orientated biomass collection in post mechanised full tree and semi mechanised tree length harvesting operations
- Authors: Ncongwane, Thandekile Hazel
- Date: 2023-04
- Subjects: Pinus patula – south Africa , Forest ecology , Biomass energy
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61511 , vital:70692
- Description: The use of biomass as an alternate source of energy has grown in popularity. Different types of biomass are obtained from a variety of sources including natural forests, forestry plantations and agriculture residues. However, forestry residues have been identified as the most promising source, due to the wide variety of plant products including leaves, twigs, branches, merchantable stem, stumps and roots. The main sources of plantation forest biomass are residues from thinning, clearfell and conventional products such as pulpwood and sawn timber operations. These residues can accumulate between 4.3 to 9.4 billion tonnes annually around the world. The biomass availability in plantation forests has led to the development of different harvesting systems to help collect the products from infield to sawmill. Biomass harvesting has mainly been achieved through mechanised systems because of their high yields. However, the use of manual systems has been neglected due to technical limitations and financial viability. Thus, in South Africa, there is no scientific research looking at manual systems of collecting biomass from plantations. Because of this, different forestry stakeholders, including small growers and contractors using manual systems for biomass harvesting have limited knowledge regarding what to expect in terms of recoverable amounts, productivity and cost. This research examines the productivity of the manual biomass collection and the quantification of recovered and unrecovered residues after mechanised full tree (FT) and semi mechanised tree length (TL) harvesting operations in Pinus patula compartments. A total number of 8 plots with +/-200 standing trees were marked in each system. The diameter and height of all marked trees were measured to determine tree volume. Moreover, the quantification of recoverable woody biomass was determined, where after, a residues assessment method using plots and line transects was used to determine the amount of unrecovered residues. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2023
- Full Text:
- Date Issued: 2023-04