The evaluation and validation of copper (II) force field parameters of the Auxiliary Activity family 9 enzymes:
- Authors: Moses, Vuyani , Tastan Bishop, Özlem , Lobb, Kevin A
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148206 , vital:38719 , DOI: 10.1016/j.cplett.2017.04.022
- Description: The Auxiliary Activity family 9 (AA9) proteins are Cu2+ coordinating enzymes which are crucial for the early stages of cellulose degradation. In this study, the force field parameters for copper-containing bonds in the Type 1 AA9 protein active site were established and used in a molecular dynamics simulation on a solvated, neutralized system containing an AA9 protein, Cu2+ and a β-cellulose surface. The copper to cellulose interaction was evident during the dynamics, which could also be accelerated by the use of high Cu O van der Waals parameters. The interaction of AA9, Cu2+ and cellulose is described in detail.
- Full Text:
- Date Issued: 2017
The feasibility of prolonged exposure therapy for PTSD in low-and middle-income countries: a review
- Authors: Booysen, Duane D , Kagee, Ashraf
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148505 , vital:38745 , DOI: 10.1080/20008198.2020.1753941
- Description: There is a need in the global south to evaluate and implement empirically supported psychological interventions to ameliorate symptoms of posttraumatic stress disorder (PTSD). Empirically supported treatments (ESTs) have increasingly been developed and implemented, yet the majority people in the global south do not have access to these treatments for mental disorders such as PTSD. Prolonged exposure therapy has accrued substantial empirical evidence to show it as an effective treatment for PTSD. Research on the effectiveness and acceptability of prolonged exposure in a low- and middle-income countries (LMICs) are sparse. This brief report presents a review of prolonged exposure (PE) therapy and its feasibility as a trauma therapy for PTSD in LMICs. First, we present a brief overview of PE as a first-line treatment for PTSD. Second, using South Africa as a case example, we present a brief overview of traumatic stress in South Africa and how mental healthcare has developed since the abolishment of apartheid in 1994. Lastly, we discuss the challenges pertaining to the dissemination and implementation of PE in LMICs and propose future perspectives regarding the implementation of ESTs such as PE in LMICs.
- Full Text:
- Date Issued: 2020
The fitting problem in a lattice Universe
- Authors: Larena, Julien
- Date: 2012
- Language: English
- Type: Text
- Identifier: vital:6780 , http://hdl.handle.net/10962/d1012405
- Description: We present a regular cubic lattice solution to Einstein field equations that is exact at second order in a small parameter. We show that this solution is kinematically equivalent to the Friedmann-Lemaitre-Robertson-Walker (FLRW) solution with the same averaged energy density. This allows us to discuss the fitting problem in that framework: are observables along the past lightcone of observers equivalent to those in the analogue FLRW model obtained by smoothing spatially the distribution of matter? We find a criterion on the compacity of the objects that must be satisfied in order for the answer to this question to be positive and given by perturbative arguments. If this criterion is not met, the answer to this question must be addressed fully non perturbatively along the past lightcone, even though the spacetime geometry can be described perturbatively. , Prepared for the Proceedings of the conference 'Relativity and Gravitation: 100 years after Einstein in Prague', Prague, 25-29th June 2012.
- Full Text:
- Date Issued: 2012
The importance of non-timber forest products in rural livelihood security and as safety nets: a review of evidence from South Africa
- Authors: Shackleton, Charlie M , Shackleton, Sheona E
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6650 , http://hdl.handle.net/10962/d1007061
- Description: We review and synthesize recent South African work that examines the role and importance of non-timber forest products (NTFPs) in the daily lives of rural people in South Africa. The most commonly used such products are wild spinaches, fuelwood, wooden utensils edible fruits, grass hand-brushes, and twig hand-brushes, used by 85% or more of households. More than half the households investigated also make use of edible insects, wood for construction, bushmeat, wild honey and reeds for weaving. Individual households may exploit dozens of animal and plant species. The range in annual, direct-use values is large, from less than R1000 per household per year to over R12 000. The value to rural households is manifest through a daily net function which represents a cost saving to the families involved and to the state, as well as through an emergency net, which serves as an insurance in times of misfortune, such as drought, disease, and unexpected economic hardship. The emergency net function has hardly been quantified in South Africa and internationally. Ad hoc trade in NTFPs is a common emergency net, which in some instances evolves into a permanent way of life. Financial returns from trade are variable, depending on resource type and hours worked, but are typically low. Despite the small cash incomes from trade, they provide an important contribution that complement the diverse livelihood strategies within a household, especially for the poorer sectors of rural society. Moreover, there are non-financial benefits of NTFP trade that are commonly overlooked.
- Full Text:
- Date Issued: 2004
The late Archaean Dominion Group, South Africa: petrogenesis of flood-type basalts and their mantle sources
- Authors: Marsh, Julian S , Rogers, N W , Bowen, M P , Bowen, T B
- Date: 1988
- Language: English
- Type: text , abstracts
- Identifier: http://hdl.handle.net/10962/131690 , vital:36721
- Description: The Dominion group has an age of 2.7 - 2.8 Ga and is the earliest of the cover sequences overlying the granite greenstone terrane in the western part of the Archaean Kaapvaal Craton, southern Africa. The Dominion group is largely built of volcanic rocks and is preserved over an area of 15,000 km² with a maximum thickness of 2.7 km.
- Full Text:
- Date Issued: 1988
The medicinal use of some weeds, problem and alien plants in the Grahamstown and Peddie districts of the Eastern Cape, South Africa
- Authors: Dold, Anthony P , Cocks, Michelle L
- Date: 2000
- Language: English
- Type: Article
- Identifier: vital:6514 , http://hdl.handle.net/10962/d1005942
- Description: A List of 33 medicinal plants of exotic or indigenous origin, listed as problem plants or declared weeds, is presented. The cultural uses of these plants should be taken into account when weed legislation in South Africa is considered. Of these species, six have no previous medicinal uses recorded in the literature surveyed and 21 species have additional, previously unrecorded uses. Nine previously unrecorded Xhosa names for plants are documented. Plant use categories and indigenous knowledge is discussed regarding the recorded species. The use of alien plants shows that African traditional healing is not static, but dynamic and adaptive.
- Full Text: false
- Date Issued: 2000
The prevalence of insufficient iodine intake in pregnancy in Africa: protocol for a systematic review and meta-analysis
- Authors: Businge, Charles Bitamazire , Longo-Mbenza , Benjamin , Kengne, Andre Pascal
- Date: 2019
- Subjects: Africa , Iodine , Pregnancy
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/5882 , vital:44662 , https://DOI:10.1186/s13643-019-1092-7
- Description: Background: Insufficient iodine intake in pregnancy is associated with many adverse pregnancy outcomes. About 90% of African countries are at risk of iodine deficiency due to poor soils and dietary goitrogens. Pregnancy predisposes to insufficient iodine nutrition secondary to increased physiological demand and increased renal loss. Iodine deficiency is re-emerging in countries thought to be replete with pregnant women being the most affected. This review seeks to identify the degree of iodine nutrition in pregnancy on the entire African continent before and after the implementation of national iodization programmes. Methods: A systematic search of published literature will be conducted for observational studies that directly determined the prevalence of insufficient iodine intake among pregnant women in Africa. Electronic databases and grey literature will be searched for baseline data before the implementation of population-based iodine supplementation and for follow-up data up to December 2018. Screening of identified articles and data extraction will be conducted independently by two investigators. Risk of bias and methodological quality of the included studies will be assessed using a risk of bias tool. Appropriate meta-analytic techniques will be used to pool prevalence estimates from studies with similar features, overall and by major characteristics including the region of the study, time period (before and after implementation of iodization programmes), sample size and age. Heterogeneity of the estimates across studies will be quantified and publication bias investigated. This protocol is reported according to Preferred Reporting Items for Systematic reviews and Meta-Analysis protocols (PRISMA-P) 2015 guidelines. Discussion: This review will help ascertain the impact of national iodization programmes on the iodine nutrition status in pregnancy in Africa and advise policy on the necessity for monitoring and mitigating iodine deficiency in pregnancy in Africa. This review is part of a thesis that will be submitted to the Faculty of Health Sciences, University of Cape Town, for the award of a PhD in Medicine whose protocol has been granted ethics approval (UCT HREC 135/2018). In addition, the results will be published in a peer-reviewed journal. Systematic review registration: PROSPERO CRD42018099434 Keywords: Iodine, Insufficiency, Pregnancy, Africa
- Full Text:
- Date Issued: 2019
The relationship between human exploitation pressure and condition of mussel populations along the south coast of South Africa
- Authors: Rius, Marc , Kaehler, Sven , McQuaid, Christopher D
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6913 , http://hdl.handle.net/10962/d1011876
- Description: Human exploitation of intertidal organisms in South Africa is an ancient activity based principally on mussels. We studied mussel populations and patterns of exploitation along a 160-km stretch of the south coast. Photographs (100 per site) were taken of the intertidal rocks at each of 14 sites, covering a range of exploitation intensities. Percentage cover was negatively correlated with number of mussel patches and positively correlated with mean shell width. PCA analysis identified groups of sites: a) accessible and unprotected sites: low cover, small mussels, patchy distribution; b) inaccessible sites and sites next to, or within, nature reserves: high percentage cover, large animals, less patchy distributions. Affluent coastal settlements also seem to confer protection against harvesting. Harvester distribution was examined by aerial surveys and combined with information on distance to the nearest beach access point and number of households within 7 km for each site. Sites within reserves and inaccessible sites had low densities of collectors, whereas sites near urban areas and in the Ciskei had the highest densities. All correlations between indicators of human exploitation and condition of mussel populations were non-significant. However, number of collectors showed positive trends with number of patches and negative trends for the two other variables. The results indicate much lower levels of exploitation than in the neighouring Transkei region, and suggest a high degree of background variability in mussel population structure.
- Full Text:
- Date Issued: 2006
The release of betamethasone 17-valerate from extemporaneous dilutions of a proprietary topical cream
- Authors: Magnus, Ashley D , Haigh, John M , Kanfer, Isadore
- Date: 1981
- Language: English
- Type: Article
- Identifier: vital:6397 , http://hdl.handle.net/10962/d1006322
- Description: Six different vehicles for topical use were used to prepare 50% dilutions of Betnovate@ (betamethasone 17-valerate, 0.1 %) cream. Blanching assessment was undertaken immediately after preparing the various dilutions and at 1 and 3 months thereafter. Few statistically significant differences were noted between any of the preparations tested indicating that the rate of release of betamethasone 17-valerate is relatively unaffected by dilution. All preparations were assayed by a stability indicating high pressure liquid chromatographic technique for corticosteroid content. A diminution in the content of betamethasone 17-valerate in the E45 dilution was found 14 months after preparation. All other formulations tested were found to comply with label claim specifications.
- Full Text:
- Date Issued: 1981
The simultaneous determination of trimethoprim, sulphamethoxazole and N4-acetylsulphamethoxazole in biological fluids by high pressure liquid chromatography
- Authors: Gochin, Rosa , Kanfer, Isadore , Haigh, John M
- Date: 1981
- Language: English
- Type: text , Article
- Identifier: vital:6364 , http://hdl.handle.net/10962/d1006064
- Description: The simultaneous determination of trimethoprim, sulphamethoxazole and N4-acetylsulphamethoxazole in serum and urine by high-performance liquid chromatography using sulphafurazole as internal standard is described. The separation was achieved on a reversed-phase column employing acetic acid-methanol as the mobile phase with spectrophotometric detection at 230 nm. Precise simultaneous quantitative analysis of the relative components has been achieved at levels of 0.1 μg/ml for both sulphamethoxazole and its N4-acetyl metabolite using 1 ml of serum or urine.
- Full Text:
- Date Issued: 1981
The Southern Ocean Group at Rhodes University: seventeen years of biological oceanography in the Southern Ocean reviewed
- Authors: McQuaid, Christopher D , Froneman, P William
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6834 , http://hdl.handle.net/10962/d1010423
- Description: This paper reviews the main findings of the Southern Ocean Group at Rhodes University over the last 17 years. A primary contribution has been the development of conceptual models of the physical-biological driving mechanisms that support enormous seasonal populations of land-based top predators at the Prince Edward Islands. Collectively, these models are referred to as the life-support system of the islands. Near-shore subcomponents of the ecosystem, including inshore feeding predators, are largely supported by autochthonous primary production of kelps and localized diatom blooms. These energy sources feed indirectly into top predator populations via the benthic communities. A crucial link is formed by the bottom-dwelling shrimp, Nauticaris marionis, which feeds largely on benthic species and detritus and is eaten by a number of diving seabirds. The frontal systems that lie north and south of the islands are important feeding grounds for offshore feeding birds. A decadal-scale southward shift in the position of the Sub-antarctic Front towards the islands is reflected in increases in populations of these species. , Rhodes Centenary issue
- Full Text:
- Date Issued: 2004
The ultrastructure and computer-enhanced digital image analysis of plasmodesmata at the Kranz mesophyll-bundle sheath interface of Themeda triandra var. imberbis (Retz) A. Camus in conventionally-fixed leaf blades
- Authors: Botha, Christiaan E J , Hartley, B J , Cross, Robin H M
- Date: 1993
- Language: English
- Type: Article
- Identifier: vital:6502 , http://hdl.handle.net/10962/d1005925
- Description: The ultrastructure of the plasmodesmata at the Kranz mesophyll-bundle sheath (KMS-BS) interface in Themeda triandra, and the substructures within the plasmodesmata were investigated, using conventionally fixed leaf-blade material, enhanced by the addition of 0.1% tannic acid to the primary fixative. Examination of high-resolution electronmicrographs, and computer-enhanced digital images suggests that these plasmodesmata are complex structures, comprised of helically-arranged particulate material. The electron-dense particles are between 2.5 and 3.0nm in diameter. These particles are specifically associated with the inner face of the inner plasmalemma membrane leaflet, and the outer region of the desmotubule wall. The electron-dense particles are presumably proteinaceous and embedded in a lipid matrix. In the constricted median portion of the KMS-BS plasmodesmata, the space between the desmotubule and the inner plasmalemma membrane leaflet and areas surrounding the proteinaceous particles thereof (the cytoplasmic sleeve) is about 3nm in cross-section, and constitutes what we believe to be the space through which intercellular transport takes place.
- Full Text: false
- Date Issued: 1993
Thermoluminescence of α-Al2O3: C, Mg annealed at 1200° C
- Authors: Kalita, Jitumani M , Chithambo, Makaiko L
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/111030 , vital:33365 , https://doi.org/10.1016/j.nimb.2018.03.003
- Description: Stimulated luminescence in α-Al2O3:C,Mg has thus far been studied for samples annealed at temperature no higher than 900 °C as can be seen by an examination of the literature. We report the thermoluminescence (TL) features of α-Al2O3:C,Mg annealed at 1200 °C. A glow curve measured at 1 °C/s from the samples annealed at 1200 °C shows eight peaks at 54, 80, 102, 173, 238, 290, 330 and 387 °C. Kinetic analyses show that the peak at 54 °C follows general order kinetics (b = 1.3) whereas the rest follow first order kinetics. The values of the activation energy of the peaks are between 0.77 eV and 1.90 eV and the frequency factors are of the order of 1010–1014 s−1. The intensity of the peaks at 54, 80, 102 and 173 °C increase with heating rate whereas those of the peaks at 238 and 290 °C decrease with heating rate. The decrease of intensity of the peaks at 238 and 290 °C with heating rate is due to thermal quenching whereas the increase of intensity of the peaks with heating rate indicates an inverse thermal-quenching-like behaviour. Interestingly this behaviour is observed only after annealing at 1200 °C. The activation energy for thermal quenching as calculated using the peaks at 238 and 290 °C are (1.02 ± 0.16) eV and (1.33 ± 0.15) eV respectively. Regarding the dosimetric features, the dose response of the peaks at 54, 80 and 102 °C are sublinear within 1–10 Gy and the peak at 54 °C saturates above 6 Gy. In contrast, the response of the peak at 173 °C is sublinear with 1–4 Gy and superlinear between 4 and 10 Gy. The peaks are found to fade at different rates and the rate of fading is also affected by annealing.
- Full Text: false
- Date Issued: 2018
Un Langage, des Visions, une Passerelle:
- Authors: Tshilumba Mukendi, J S
- Date: 2016
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/146177 , vital:38502 , ISBN 9789074816496 , https://books.google.co.za/books?id=QDSdAQAACAAJanddq=Creer+en+postcolonie:+Voix+et+dissidences+belgo-congolaise+2010-2015andhl=enandsa=Xandved=0ahUKEwjts_Si_b_pAhXvShUIHWXwCd4Q6AEIJzAA
- Description: Book abstract. The authors and artists (Baloji, Toma Muteba Luntumbue, Nganji Laeh, Nina Miskina, Joëlle Sambi, Sarah Arens, Heleen Debeuckelaere, Bénédicte Kumbi ...) who contributed to the work to debate the Belgian postcolonial question and it will be punctuated by poetic and musical stops.
- Full Text:
- Date Issued: 2016
Use of a non-hepatic cell line highlights limitations associated with cell-based assessment of metabolically induced toxicity:
- Authors: Weyers, Carli , Dingle, Laura M K , Wilhelmi, Brendan S , Edkins, Adrienne L , Veale, Clinton G
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/160290 , vital:40431 , DOI: 10.1080/01480545.2019.1585869
- Description: Metabolically induced drug-toxicity is a major cause of drug failure late in drug optimization phases. Accordingly, in vitro metabolic profiling of compounds is being introduced at earlier stages of the drug discovery pipeline. An increasingly common method to obtain these profiles is through overexpression of key CYP450 metabolic enzymes in immortalized liver cells, to generate competent hepatocyte surrogates. Enhanced cytotoxicity is presumed to be due to toxic metabolite production via the overexpressed enzyme. However, metabolically induced toxicity is a complex multi-parameter phenomenon and the potential background contribution to metabolism arising from the use of liver cells which endogenously express CYP450 isoforms is consistently overlooked. In this study, we sought to reduce the potential background interference by applying this methodology in kidney-derived HEK293 cells which lack endogenous CYP450 expression.
- Full Text:
- Date Issued: 2020
Using action cameras to estimate the abundance and habitat use of threatened fish in clear headwater streams:
- Authors: Hannweg, B , Marr, S M , Bloy, Lesley E , Weyl, Olaf L F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148911 , vital:38785 , DOI: 10.2989/16085914.2019.1701404
- Description: Snorkel and electrofishing surveys are the traditional baseline methods for fish surveys in clear headwater streams. However, action cameras provide a non-harmful alternative to monitor freshwater fish populations to develop informed conservation management initiatives. In this paper, estimates from photographs and videos from action cameras are compared with snorkel survey estimates of the density of a threatened endemic minnow species in a headwater stream, Eastern Cape, South Africa. Photograph-based relative abundances of fish summed over five microhabitats in each pool returned equivalent results to snorkel surveys, whereas the equivalent video-based abundance estimates were approximately 50% greater than the snorkel estimates. Therefore, photograph-derived estimates could be used as an alternative to snorkel surveys for fish population monitoring and habitat use studies in clear headwater streams.
- Full Text:
- Date Issued: 2020
VC's welcome at the Rhodes University house committees and sub-wardens workshop
- Authors: Badat, Saleem
- Date: 2013-01-30
- Language: English
- Type: Text
- Identifier: vital:7914 , http://hdl.handle.net/10962/d1016464
- Full Text:
- Date Issued: 2013-01-30
Vice-Chancellor's welcoming address 2011
- Authors: Badat, Saleem
- Date: 2011
- Language: English
- Type: text
- Identifier: vital:7591 , http://hdl.handle.net/10962/d1006582
- Description: From introduction: The Purposes of a University. So permit me to spend a few minutes on the meaning of a university and the three purposes. Rhodes University exists to serve. The first purpose is to produce knowledge, so that we can advance understanding of our natural and social worlds and enrich our scientific and cultural heritage. This means that we ‘test the inherited knowledge of earlier generations’, we dismantle the mumbo jumbo that masquerades for knowledge, we ‘reinvigorate’ knowledge, and we share our findings with others. As a university, our second purpose is to disseminate knowledge and to develop your minds. Our goal is to ensure that you can think imaginatively, ‘effectively and critically’; that you ‘achieve depth in some field of knowledge’; that you can critique ideas and views and construct alternatives, and that you can communicate cogently, orally and in writing. Our final purpose as a university is to undertake community engagement, whether this is as part of academic courses or your voluntary participation in community projects organized by our Community Engagement Office.
- Full Text:
- Date Issued: 2011
What "global art" and current (re)turns fail to see: a modest counter-narrative of "not-another-biennial"
- Authors: Simbao, Ruth K
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147314 , vital:38625 , https://0-hdl.handle.net.wam.seals.ac.za/10520/EJC176315
- Description: What is the scope of "global art" and who drives its framing within the current climate of 'corporate globalization' (Demos 2009 : 7, emphasis in original)? In what ways do the recent global turn and curatorial turn underwrite meaningful global inclusivity and visibility, and to what degree does this globally shared art constitute mutuality? Does "global art", including the accompanying process of biennialisation, allow for local narratives in a way that seriously accounts for a geopolitical view of contemporary art in the twenty-first century? While the inclusion of "new art worlds" in what Belting, Buddensieg and Weibel (2013) term "global art" is framed as a democratisation of contemporary art and the demise of the western art canon, it is important to raise questions regarding the blind spots of this supposedly global, post-1989 expansion.
- Full Text:
- Date Issued: 2015