Baseline description of the Benthic Biotopes for two Long-Term Ecological Research (LTER) stations in Algoa Bay, Agulhas ecoregion, South Africa
- Authors: Parker-Nance, Shirley
- Date: 2021-10-29
- Subjects: Benthic ecology South Africa Algoa Bay , Long-Term Ecological Research Program , Marine invertebrates South Africa Algoa Bay , Reef ecology South Africa Algoa Bay , Coastal zone management South Africa Algoa Bay , Reef fishes South Africa Algoa Bay , Ecological mapping South Africa Algoa Bay
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191680 , vital:45147 , 10.21504/10962/191680
- Description: Shallow coastal marine ecosystems provide important resources to society but are increasingly under threat from anthropogenic impacts. These systems form an interface between land and sea, providing valuable resources. Global environmental change, overexploitation, habitat transformation, pollution and policies aimed at short-term socio-economic gains are driving the loss of natural resources, productivity and biodiversity. Consequently, a comprehensive and holistic understanding of the current and future states of marine ecosystems is essential. This requires insight into the processes involved in maintaining genetic, species, habitat, community and biotope diversity at an ecosystem level. An understanding of ecosystem processes and the ability to detect changes in biodiversity, biotopes, seascape composition and ecosystem functioning require observation made over time and space. In response to this need, Long-Term Ecological Research (LTER) programmes such as those established by the South African Environmental Observation Network (SAEON) supported by the Department of Science and Innovation’s (DSI) Shallow Marine and Coastal Research Infrastructure (SMCRI) collect long–term observational data from different environments and systems. This study aimed to evaluate data collected as part of the developmental phase of a newly established benthic research platform. The datasets constructed are used to develop a baseline description of the benthic biotopes of two study areas within Algoa Bay. It aimed to gain insight into the feasibility of the methods used and the value of the data and derived essential biological variables (EVB). Assessing the sustainability of the programme over time was done through a practical evaluation of the methodology to be used and the technical feasibility of data collection and analysis. It furthermore aimed to assess the data usefulness in describing biodiversity at various scales and its sensitivity in reporting change. This pilot study provides valuable insight into data collection methodologies and introduces new sampling platforms. The baseline dataset consisted of data collected during the first 18 months of the SAEON Benthic Ecosystem Long-Term Ecological Research (BELTER) platform in Algoa Bay, Agulhas ecoregion, Western Indian Ocean, South Africa. This comprised of the collection of images for 150 m2 of the researched benthic seascape and 306 stereo video data streams. The 77 760 point dataset allowed the identification of 12 substrate types, 7 biotopes, 44 sub-biotope units, 377 sessile and sedentary benthic species and 51 ichthyofauna species. The described habitat and benthic communities and the defined benthic biotopes allowed for the assessment of biotope heterogeneity and the construction of a provisional distribution map for the broader biotopes. This work includes a study into the infra- and supra-benthic ichthyofauna associated with the defined biotopes and investigates the role habitat and benthic communities play in the distribution of these fish 3 assemblages. Lastly, it assesses the value of morphological traits and diversity indices for describing and comparing abiotic and biotic components of observed systems within the shallow coastal marine seascape. This study shows that species composition differs significantly between biotopes with habitat type playing a key role in the composition of the benthos. Substrate type, consolidated or unconsolidated, depth and the composition of the soft sediment is the most important determining factors. The White Sands Reef station has a higher species diversity than the St Croix Island Complex station with a higher percentage cover associated with the hard substrate. The dissimilarity between biotopes and communities are generally high although similarity within the biotopes or communities was found to be relatively low. This was considered indicative of high heterogeneity within the biotopes and a patch or mosaic-like distribution of communities within the broader biotope. A fine-scale a posteriori analysis of the data collected confirmed the high heterogeneous nature of both habitat and communities within the broader biotope. The description of the abiotic and biotic variables resulted in the identification of a diverse suite of biotope subunits. The character of the biotope hinges not only on the composition of the substrate and biota present but the contribution of smaller distinct biotopes subunits, their distribution and representation within broader biotopes and the degree these are shared with other broader biotopes. The distribution of these biotope units at different scales is believed to be important in understanding inherent diversity, niche partitioning and connectivity within a highly heterogeneous seascape. Ichthyofauna associated with the broader biotopes were indicative of the substrate type. Low profile reef systems with interspaced sandy stretches supported both reef fish and those typically associated with sandy substrates. Benthic biotopes associated characteristically with higher profile reef systems and less sand or soft sediment were mainly utilized by reef-associated fish species. Substrate type, depth and seasonality were found to be important factors in the observed composition and distribution of ichthyofauna over the seascape. Although fish species were found to have a wide distribution and made use of multiple biotopes the average abundance of the species within the observed assemblages differed. Analysis of ichthyofauna species composition indicated that observed fish assemblages were homogeneous within five of the seven biotopes. Broader biotopes that were found to be significantly different between sample locations are characterised by a diverse complement of biotope subunits and are highly heterogeneous. Traits and diversity indices are important tools for assessing and comparing different systems within the seascape, both spatially and temporally. The classification of the biota into broader phylogenetic groups indicated a significant difference between biotopes. This is especially useful when detailed 4 analysis or species identification is not possible or the skill set is not available. Morphological traits included in this study informed on the physical structure of the communities present and in combination with substrate type provided insight into the three-dimensional structure of the biotope. Species diversity, abundance, density estimates and the Shannon-Weiner diversity index were found to be the most useful diversity indices characterising and comparing biotopes. This was less so for ichthyofauna. Significant differences in the number of species observed were evident only between consolidated and unconsolidated dominated substrates. Although there was no significant difference in the number of individuals observed, both the Shannon-Weiner and Simpson Diversity indices were able to highlight differences in the fish assemblages observed for the different biotopes. The data collected, although permitting a comprehensive baseline assessment of the benthic environment for two research stations within the SAEON Algoa Bay LTER Sentinel Site, is temporally limited. The ichthyofauna dataset used was small and it is understood that the addition of length-frequency analysis of observed ichthyofauna will benefit our understanding of the biotope use by infra- and supra-benthic fish species over their life history within the larger seascape. Seasonal differences were evident and it is expected that datasets spanning several years, including LTER stations within different marine ecosystems types, will provide valuable insights on system dynamics in the short and long term both spatially and temporally. This study is the first attempt to evaluate the methodology developed and data collected in the South African Environmental Observation Network’s, Elwandle Coastal Node as part of the Shallow Marine and Coastal Research Infrastructure Benthic Ecosystem Long-Term Ecological Research (BELTER) platform. Newly designed and developed sample equipment and a sampling regime allowed for the collection of data on a long-term basis. The study was successful in the description of the biotope and biotope subunits for two research stations in Algoa Bay. It permitted the construction of comprehensive species lists for both benthic sessile and sedentary biota and the associated ichthyofauna. The subset of data used was successful in reporting on both spatial and temporal change. This work demonstrates that in the absence of detailed species identifications, traits may be used to describe habitat and community structure and report on abiotic and biotic biotope characteristics. This study furthermore allowed for the comparison of a comprehensive suite of diversity indices highlighting indices that may be especially useful in routine BELTER reporting. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
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- Date Issued: 2021-10-29
Behaviour and trophic ecology of oceanic triggerfish (Canthidermis maculata) and rainbow runner (Elagatis bipinnulata) associated with floating objects in the open ocean
- Authors: Forget, Fabien Rocky Gilbert
- Date: 2016
- Subjects: Uncatalogued
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/193531 , vital:45340
- Description: The oceanic triggerfish (Canthidermis maculata) and rainbow runner (Elagatis bipinnulata) are epipelagic species that commonly associate with floating objects throughout the world’s tropical oceans. Besides tunas, these two species often form the bulk of the aggregation and are major non-target species (bycatch) incidentally captured at fish aggregation devices (FADs) by tropical tuna purse seiners. Despite being abundant, little is known about their basic biology, ecology and associative behavior with floating objects. This thesis aims to address knowledge gaps in their associative behavior and ecology at floating objects and attempts to explore potential bycatch mitigation methods. Acoustic telemetry was used to characterise several aspects of the two species’ behavior at floating objects. Fish were captured and tagged at drifting FADs in the core of the western Indian Ocean tuna fishing grounds. Prolonged remote observations were obtained through satellite linked receivers which provided fine-scale data on the behavior of oceanic triggerfish (n= 46 919 cumulated observation days) and rainbow runner (n= 24 538 cumulated observation days). The two species remained associated with the same floating object for periods extending up to several months. The mean residence time estimated using a survival analysis was 65 days for oceanic triggerfish and 94 days for rainbow runner. A distinct diel pattern in association was observed; the two species were closely associated to the FAD during the night and increased their home range during the day while performing short excursions (oceanic triggerfish mean: 2.0 hours ±1.6 SD; rainbow runner mean: 2.4 hours ±2.2 SD) away from the FAD. Similarly, distinct patterns in the vertical movements and locomotory activity (measured using accelerometer tags) were observed as the two species increased their vertical movements and activity levels during the day. Generally, their vertical movements were largely restricted to the mixed layer (< 60 m). At night, the two species remained close to the surface (0-5 m) where they appear to be in a resting state. An interesting behavioural switch in activity levels and vertical distribution was observed for oceanic triggerfish which coincided with a change in the environment as the FAD drifted close to a cold-core cyclonic eddy. Ambient light appears to be the key stimulus triggering the observed diel behavioural patterns. species-specific vulnerability for target species, skipjack (Katsuwonus pelamis), yellowfin (Thunnus albacares), bigeye tuna (Thunnus obesus) and non-target species, including silky shark (Carcharhinus falciformis), oceanic triggerfish, and rainbow runner, to the purse seine fishing gear were investigated. Hourly presence rates at FADs over 24 hours were examined to assess whether the capture rate of non-target species could be reduced at specific times during the day. Silky sharks displayed a similar associative pattern to that of targeted tunas. Moreover, the vulnerability of both target and non-target species were close to the maximum during the period of behavioural transitions at sunrise when the majority of the fishing sets are made. As such, a change in set time in the western Indian Ocean does not appear to be a feasible method to reduce capture rates of non-target species. Stomach content and stable isotope analysis were conducted on oceanic triggerfish (stomach n = 152, isotope n = 65) and rainbow runner (stomach n = 156, isotope n = 71) incidentally captured individuals at FADs by purse seiners. Typical FAD-associated prey items represented a minor component of their diet as they predominantly foraged on zooplankton and micronekton in the water column, suggesting that oceanic triggerfish and rainbow runner do not associate to floating objects for direct trophic advantages. Overlap in their dietary and isotopic niches indicates an intermediate level of competition. Overall, the spatial and trophic ecology of both species are remarkably similar and prolonged associations with FADs indicates that floating objects play a significant ecological role in the pelagic environment for the two species. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2016
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- Date Issued: 2016
Cape Fold Ecoregion fish community ecology and responses to stressors
- Authors: Broom, Casey Jay
- Date: 2022-10-14
- Subjects: Cyprinidae South Africa Western Cape , Freshwater fishes South Africa Western Cape , Cyprinidae Habitat South Africa Western Cape , Food chains (Ecology) , Restoration ecology South Africa Western Cape , Riparian restoration South Africa Western Cape
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365644 , vital:65772 , DOI https://doi.org/10.21504/10962/365644
- Description: Freshwater fishes are in global decline and fish as a group are the most imperilled of all vertebrates. Freshwater systems are among the most threatened globally, largely owing to their comparatively high species and habitat diversity while occupying a minute fraction of the Earth’s surface. In South Africa, invasion by non-native fishes has had a devastating effect on freshwater systems across the country. Numerous other stressors and anthropogenic impacts continue to impact these systems, including habitat degradation, water abstraction and global change effects. In general, South African freshwater systems are under-studied and there is a lack of baseline biological and ecological studies on many freshwater fish species. The Cape Fold Ecoregion (CFE) of South Africa is a particularly vulnerable region, with many range-restricted species and highly fragmented native fish ranges following high invasion rates. Within the CFE, the Olifants-Doring River System (ODRS) is of primary concern owing to the high endemism and imperilled status of its freshwater fish species. The Rondegat River in the ODRS is of notable conservation value, as it hosts populations of important endemic CFE species. This river is unique, being the site of the first alien fish eradication programme of its kind in South Africa. Thus the Rondegat River, and in particular its imperilled cyprinid assemblage, is used here as a case study of the responses and community dynamics of recovering freshwater fish species. The members of this cyprinid assemblage are Sedercypris calidus, Pseudobarbus phlegethon and Labeobarbus seeberi. Sedercypris calidus and L. seeberi are listed by the International Union for the Conservation of Nature (IUCN) as “Near-Threatened”, while P. phlegethon is listed as “Endangered”. Understanding the dynamics and responses to understudied vulnerable fish communities in the wake of restoration efforts was the overarching goal of this thesis. The first chapter served as a review of current knowledge of the CFE, the Rondegat River, the myriad stressors that have impacted on or are projected to affect this region, and the freshwater fish species on which those stressors act. My first investigations served as an extension of the existing Rondegat River monitoring programme, making use of remote underwater video (RUV) data to assess relative abundance and habitat associations of the focal species (Chapter 2). A relatively limited spatial range of P. phlegethon was established, which was suggested to be a result of relatively highly specialised habitat requirements and sensitivity to disturbance. Sedercypris calidus was confirmed as a relatively more abundant and ubiquitous species across the length of the Rondegat River, sharing much of the lower and middle reaches with L. seeberi. I sought to use experimental trials of functional response, as a proxy for feeding performance, across representative temperatures and relevant prey types, in the spatially overlapping S. calidus and L. seeberi (Chapter 3). Labeobarbus seeberi generally outcompeted S. calidus across temperature treatments and prey types. The ecomorphology and diet of all three species were used to construct trophic profiles, which suggested that there was a high degree of feeding capacity overlap between L. seeberi and S. calidus, while P. phlegethon diverged from the other two species (Chapter 4). Gut content suggested that all three species overlapped broadly in diet. This indicated that the realised trophic niche of these species is similar, despite some morphological specialisation. I then used RUV data to investigate in-situ feeding behaviours, with the aim to disentangle the nuances of community dynamics and mechanisms of coexistence in the cyprinid assemblage (Chapter 5). I found that, despite the higher feeding performance of L. seeberi (Chapter 3) and its overlaps in diet and feeding capacity with S. calidus (Chapter 4), S. calidus is able to mitigate competitive pressures through foraging mode switching and exploitation of allochthonous food inputs. Evidence for further habitat and prey selectivity in Pseudobarbus phlegethon was gathered based on dependence on complex habitats and pool refugia for the majority of its feeding, supporting this species as a headwater specialist; alongside signals of its spatial and habitat use patterns (Chapter 2). While S. calidus and L. seeberi were found to be less habitat-specific than P. phlegethon, caution was noted in the potential for ongoing stressors, such as habitat destruction, loss of river connectivity and global change effects, to impact on the reproductive success of these two species. Stressors affecting the habitats and sensitive invertebrate taxa upon which all three species depend continue to threaten the Rondegat system, highlighting the need to maintain ecosystem integrity through conservation interventions. There remains significant scope to maintain restoration efforts in the Rondegat River and other river systems of the CFE, through direct conservation actions, enhanced community awareness, indigenous riparian vegetation restoration and involvement of local stakeholders in various conservation-centred activities. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-10-14
Comparative fish ecology in three periodically connected rivers in the upper Zambezi and Okavango ecoregions
- Authors: Taylor, Geraldine Claire
- Date: 2017
- Subjects: Fishes Ecology Zambia Zambezi District , Floodplain ecology Zambia Zambezi District , Stable isotopes , Fishes Food Zambia Zambezi District , Fishes Mortality Zambia Zambezi District , Fish populations Zambia Zambezi District , Fishes Growth
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/65055 , vital:28660 , DOI https://doi.org/10.21504/10962/65055
- Description: The Upper Zambezi, Kavango and Kwando rivers are three periodically interlinked floodplain rivers which share the same Upper Zambezian floodplain ichthyofauna. The aim of this thesis was to compare the biology and ecology of the fish communities in these three rivers. The objective was to test the hypothesis that fish community composition and assemblage structure, fish diets, food web structure and trophic dynamics, fish growth rates and total mortality are influenced by the differing flood magnitudes of the three rivers, in support of the flood pulse concept. To understand the abiotic characteristics of each river, water temperature, flood regime, total dissolved inorganic nitrogen concentrations and water quality parameters were measured and compared between rivers. Water temperatures varied seasonally, and seven day moving averages peaked above 30 °C in January, and fell to between 16 and 19 °C in June. The Zambezi River had the largest flood (6.14 m), followed by the Kavango River (3.80 m), while the Kwando River had the smallest flood (0.65 m). Total dissolved inorganic nitrogen concentrations were low in the Kavango and Zambezi Rivers (0.2 - 0.6 mg/l), and slightly higher in the Kwando River (<1 mg/l). Conductivity, total dissolved solids and total dissolved inorganic nitrogen concentrations decreased with the flood (dilution effect). Using biomass catch per unit effort data from experimental gillnets, fish community composition and assemblage structure was described, and differed between rivers in all hydrological seasons. In the Zambezi and Kavango rivers, fish assemblages varied with hydrological season as a result of the homogenising influence of the flood pulse, while in the Kwando River fish assemblages did not differ seasonally as flood pulses were small and often irregular. Differences in community composition were attributed to the abundance of Hydrocynus vittatus, a large bodied open water predator, in the Zambezi and Kavango rivers, and its relative absence in the Kwando River. Based on the results of the community composition, six focus species were chosen that were abundant and representative of the various feeding modes and life history strategies of the fish community. These were the striped robber Brycinus lateralis, sharptooth catfish Clarias gariepinus, blunttooth catfish Clarias ngamensis, African pike Hepsetus cuvieri, silver catfish Schilbe intermedius and purpleface largemouth Serranochromis macrocephalus. Stomach contents analysis was then used to compare the feeding ecology of the six example species between rivers. Clarias gariepinus, C. ngamensis and S. intermedius were piscivorous in the Zambezi and Kavango rivers, and preyed upon more invertebrates in the Kwando River, while Hepsetus cuvieri and S. macrocephalus were piscivorous in all three rivers. Differences in diets were attributed to seasonal prey abundance, with prey fishes abundant during falling and low water when the Zambezi and Kavango rivers were sampled, while invertebrates were abundant during rising and high water when the Kwando River was sampled. Prey mastication by B. lateralis made prey identification difficult. For other predators, the usefulness of stomach contents analysis for dietary descriptions was restricted by the high proportion of empty stomachs. As a result, whole ecosystem stable isotope analysis was used to gain a holistic understanding of the food web structure and fish feeding ecology of the three rivers. The Zambezi and Kavango river food webs were supported by C enriched resources such as C4 and C3 riparian vegetation from the floodplain, while the Kwando River food web was based on C depleted resources such as filamentous algae and aquatic macrophytes. The Zambezi River food web had a restricted nitrogen range, with reduced food chain length and the predators in this river did not occupy such elevated trophic positions compared to in the Kavango and Kwando river food webs. This was attributed to the overfishing of the primary and tertiary consumers in the Zambezi River, a phenomenon known to reduce food chain length. Focussing on predator communities, in the Zambezi and Kavango rivers, H. vittatus isotopic niche width was large and overlapped significantly with most other predators, while in the Kwando River predator niches were more distinct. This supported previously proposed hypotheses by describing H. vittatus as a dominant predator which excludes all other fishes by predation or competition. Despite the dominance of H. vittatus, C. gariepinus occupied the position of top predator in all three rivers, and information on the habitat use, feeding habits and trophic niches of the serranochromine cichlids added understanding of their ecology. Lastly, age was determined using sectioned sagittal otoliths for C. gariepinus, C. ngamensis, S. intermedius and S. macrocephalus and using whole asteriscus otoliths for B. lateralis and H. cuvieri, and growth was modelled using the von Bertalanffy growth equation. Growth performance was high in the Zambezi and Kavango rivers, and lower in the Kwando River, most likely in response to the varying flood magnitudes. Total mortality rates, estimated using Hoenig’s maximum-age based equation, were high in the Zambezi River as a result of the high fishing pressure on this river. Overall floodplain fish ecology in the Zambezi, Kavango and Kwando rivers was influenced by the flood pulse, as was predicted by the flood pulse concept. Periodic and equilibrium life history strategists were found to adapt either to the pulsing environments of the Zambezi and Kavango rivers, or to the more stable environment of the Kwando River, and large bodied, long lived periodic strategists such as C. gariepinus tended to be highly plastic and able to thrive in most conditions. Data also suggested that Zambezi River food web structure and fish mortality rates have been impacted by overfishing, for which more information is needed to conserve and manage this system. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2018
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- Date Issued: 2017
Economically important cephalopods of southern Angola, with a focus on the artisanal jig fishery
- Authors: Vázquez Morán, Chénelle Lesley
- Date: 2023-03-31
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/422529 , vital:71955 , DOI 10.21504/10962/422529
- Description: The global decline in marine finfish stocks has been met with a concomitant expansion of fisheries for cephalopods. Despite the increase in the exploitation and commercialization of cephalopods, there is a dearth of scientific information for over 90% of the extant species and this is even more marked in the developing world. Angolan capture fisheries production noted a tenfold increase in cephalopod landings between 1994 and 2003. One of the important fisheries is a cephalopod directed jig fishery that targets the squid Loligo reynaudii and the cuttlefish Sepia vermiculata in southern Angola, however, there is a complete lack of socio-ecological information available for this fishery. Hence the aim of this thesis was to provide basic biological and demographic information on L. reynaudii and S. vermiculata distributed off the coast of southern Angola, assess the importance and dependence of local artisanal fishers on these two species and examine the current management strategies and policies in the region This study found that the artisanal cephalopod jig fishery is critical for the livelihoods of the coastal communities of southern Angola, particularly due to the limited alternative income generating opportunities available. The cephalopod jig fishery is highly labour intensive, with fishers spending a considerable amount of time per day, drifting over known fishing grounds. Catch composition of the artisanal jig fishery indicated that squid is the dominant species within the fishery, in terms of numerical abundance and weight. The productivity and progression of the fishery is hampered by a number of ecological, socio-economic and governance constraints, as highlighted by socio-economic surveys conducted with local squid fishers. Such constraints include, but are not limited to declining catches, increased negative interactions with seals, increased inter-sector competition, lack of infrastructure, poor quality fishing equipment as well as a lack of communication and support from government officials. To examine aspects of the biology and demography of L. reynaudii, whole specimens were collected monthly, from the two primary fishing areas in southern Angola; Namibe and Tombua, during two main sampling periods, June 2008 – May 2009 (Period 1) and June 2014 – May 2015 (Period 2). Male L. reynaudii were found to be significantly larger in size and weight than females, however both the average and maximum dorsal mantle length (DML) decreased between sampling periods. Length-at-50% maturity was larger for male L. reynaudii (170.47 mm DML – 1st period, 165.44 mm DML – 2nd period) than female L. reynaudii (114.71 mm DML – 1st period, 109.43 mm DML – 2nd period). Gonadosomatic indices (GSI) varied significantly during month and season for both sexes. Peak GSI coincided with a low catches in the artisanal jig fishery suggesting that the population may undergo a spawning migration away from fishing grounds, during late spring and summer. The theory of a seasonal spawning migration is further supported in this study by the low abundance of juvenile and sub-adult L, reynaudii collected during the study, along with the inability to detect egg beds in known fishing grounds. Stomach content analysis indicated that teleosts were the most important dietary item (66.3% F of the stomach contents). Trachurus capensis and Engraulis encrasicolus are both highly abundant small pelagic fishes in the cold nutrient rich waters of the Benguela Current and dominated the diet of sampled squid during autumn and winter months. It is likely that the prevalence of large, adult squid off the coast of Angola, as observed within the current study, may be ascribed to the suitable environmental conditions and the abundance of suitable prey. The results from the current study indicate that the southern Angolan subpopulation reveals similarities to that of the West Coast subpopulation of squid in South Africa, with regards to demographics and reproductive characteristics. It is likely that the population in southern Angola is an extension of the South African subpopulation of L. reynaudii on the western extremities. To examine the basic population biology and ecology of S. vermiculata off southern Angola whole specimens were collected from the fishery between December 2014 and April 2015. Morphological results indicate clear sexual dimorphism in soft part characteristics, cuttlebone and beak morphometry. Length-at-50% maturity was smaller in male S. vermiculata (217.53 mm DML) than female S. vermiculata (231.13 mm DML), although these differences were not significant. Stomach content analysis indicated that S. vermiculata predominantly fed on teleost species which were found within 64.5% of stomachs. Teleosts were more dominant in the diet of male S. vermiculata (78.6% F) than female S. vermiculata (53.0% F), which ate a more varied diet including crustaceans (41.2% F) and cephalopods (17.7% F). Availability and abundance of cuttlefish in Namibe indicates that the species may undergo a spatio-temporal shift in distribution, with majority of the artisanal catches of S. vermiculata occurring during summer months. The results from the current study highlights the fisheries potential of L. reynaudii and S. vermiculata and the dependence of artisanal fishers in southern Angola on cephalopods, and more specifically squid. The development of sustainable fisheries management strategies for the artisanal cephalopod jig fishery is critical, particularly as the global exploitation of cephalopods continues to increase with declining finfish populations. Failure to implement management strategies may remove this critical economic safety net for vulnerable coastal communities which have little alternative livelihood opportunities. Ongoing ecological research, a co-management approach and an increased consideration of local ecological knowledge will assist in designing appropriate management plans for the southern Angolan cephalopod jig fishery. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
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- Date Issued: 2023-03-31
Evaluating and predicting impacts of Australian redclaw crayfish Cherax quadricarinatus and Louisiana red swamp crayfish Procambarus clarkii invasions
- Authors: Madzivanzira, Takudzwa Comfort
- Date: 2021-10-29
- Subjects: Cherax Africa , Procambarus clarkii Africa , Freshwater crabs Africa , Crayfish Zambezi River , Crayfish Food Zambezi River , Aquatic biodiversity Africa , Conservation biology Zambezi River , Fishing Catch effort Africa , Introduced freshwater organisms Africa , Fish populations Africa , Functional response (FR)
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191137 , vital:45064 , 10.21504/10962/191137
- Description: Freshwater crayfish have become one of the most widely introduced freshwater taxa globally. Crayfish introductions have not spared the African continent, which, apart from Madagascar, is naturally devoid of native freshwater crayfish. These introductions are of concern because invasive crayfish have generally been shown to cause strong impacts on recipient ecosystems outside Africa. This study therefore set out to compile up-to-date information regarding crayfish introductions in Africa, their pathways and distributions and to improve our understanding of the nature and magnitude of their environmental impacts. A systematic review revealed that nine crayfish species have been introduced into the continent with five of those, Astacus astacus, Cherax quadricarinatus, Faxonius limosus, Procambarus clarkii and Procambarus virginalis, having established naturalised populations in fourteen African countries (Chapter 2). The main driver of these crayfish introductions was to provide socio-economic benefits but there is limited evidence of success. The thesis further documents attempts made to address crayfish knowledge gaps in Africa, including standardisation of C. quadricarinatus sampling gear (Chapter 3), determination of the distribution of C. quadricarinatus in the recently invaded Upper Zambezi Basin (Chapter 4), and predicting ecological and socioeconomic impacts of two crayfish species that are spreading rapidly in Southern Africa, namely, C. quadricarinatus and P. clarkii (Chapters 5 – 8). To standardise C. quadricarinatus sampling methods in Africa, two methods used in Southern Africa were compared and the Promar® collapsible trap baited with dry pellets was recommended as the best approach for C. quadricarinatus abundance studies due to the high catch per unit effort (CPUE), probability of capture and the suitability of dry dog food as a standard bait. This standard approach was used for crayfish surveys in the Zambezi Basin to comprehensively determine the spread and establishment of C. quadricarinatus across the basin. The establishment of C. quadricarinatus in the Barotse Floodplain, Upper Zambezi Floodplains freshwater ecoregion was confirmed. Although the probability of capture and catch per unit effort (CPUE) of C. quadricarinatus in the Barotse floodplain were similar to that of older invasions in the basin (Lake Kariba and Kafue River), morphometric differences among C. quadricarinatus populations sampled from these invaded regions were detected. Although crayfish were not detected in other regions, for example, the Okavango Floodplains ecoregions, C. quadricarinatus have the potential to spread at a downstream and upstream rate of 49 and 12 km·year-1, impacting native biota therein. To evaluate the potential for ecological impacts, the consumer-resource dynamics of C. quadricarinatus and P. clarkii were described in comparison to a native trophic analogue, the freshwater crab of the Potamonautes genus, preying on various native taxa ubiquitous to African aquatic and terrestrial ecosystems. The use of functional response (FR) and consumption experiments in this study showed the potential impacts of the two crayfish species on native resources and on resources that support livelihoods in invaded ecosystems. This in most cases was a result of their high attack parameter, which also resulted in high functional responses ratios (FRRs) compared to native crabs. The crayfish FR, FRRs and consumption rates were mostly enhanced under the high temperature treatments. The FRs and consumption results were then combined with the field biomasses of crayfish and crabs to calculate the relative impact potential (RIP) to successfully predict the degree of impact caused by crayfish species relative to crabs. Crayfish species consistently displayed RIP scores > 1 relative to the native crab irrespective of region, which were higher for the summer than the winter season, suggesting greater impact of the invaders compared to the native species. This study further estimated the socioeconomic losses due to catch spoilage by C. quadricarinatus which are up to 1500 t per year in the invaded Kafue River Basin, which translates to an annual income loss of US$ 2 million. Information provided in this study is vital for conservation management and to compel policymakers to develop appropriate conservation management tools within regulatory frameworks, which could stop or minimise the spread of crayfish species and protect Africa from further losing aquatic biodiversity. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Mitigating salt accumulation in recycled brewery effluent through the integration of water treatment, agriculture and aquaculture
- Authors: Mabasa, Nyiko Charity
- Date: 2021-10-29
- Subjects: Brewery waste South Africa Eastern Cape , Recycling (Waste, etc.) South Africa Eastern Cape , Water reuse South Africa Eastern Cape , Irrigation South Africa Eastern Cape , Sewage Purification Anaerobic treatment , Constructed wetlands , Aquaculture
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191126 , vital:45063 , 10.21504/10962/191126
- Description: Water scarcity in South Africa, and globally, presents challenges for industries. It is imperative to develop responsible water use, such as recycling and reusing wastewater from food processing industries such as breweries. The Ibhayi Brewery (SAB Ltd) employs a combination of sustainable treatment processes that include anaerobic digestion (AD), primary facultative ponds (PFP), high rate algal ponds (HRAP) and constructed wetlands (CW) to treat brewery effluent on an experimental scale. The constituent concentrations of these experimentally treated effluents are within the ranges prescribed by local regulations to allow for potential downstream use in agriculture and aquaculture. However, the sodium content in this treated effluent, which originates from upstream cleaning agents and pH control at the onsite effluent treatment facility, is a constraint to the downstream use of brewery effluent. This study addresses the salt problem, by investigating the potential of either reducing/eliminating salt addition at source, or developing alternative techniques for downstream agriculture to mitigate the effects of salt accumulation caused by irrigation with brewery effluent. Four salt-tolerant test crops; Swiss chard (Beta vulgaris), saltbush (Atriplex nummularia), Salicornia meyeriana and sorghum (Sorghum bicolor), grew efficiently in brewery effluent irrigated soils but did not stop sodium accumulation in the growth medium. Swiss chard had the best growth with a wet biomass accumulation of 8,173 g m-2, due to the plant’s ability to tolerate saline conditions and continuous cropping. Crop rotation, to limit effects of nutrient depletion in soil, had no significant effect on plant growth suggesting soils were adequately able to provide micro-nutrients in the short-term. Prolonged irrigation with brewery effluent can lead to sodium accumulation in the soil, which was successfully controlled through the addition of soil amendments (gypsum and Trichoderma cultures). These reduced soil sodium from a potentially limiting level of 1,398 mg L-1 to the acceptable levels of 240 mg L-1 and 353 mg L-1 respectively, mainly through leaching. However only Trichoderma improved Swiss chard production to 11,238 g m-2. While crop rotation in this work did not contribute to mitigating the problem of salt accumulation, soil amended with Trichoderma appears to be a potential solution when brewery effluent is reused in agriculture. In an alternative to soil cultivation, CWs were trialled with no significant differences in the sodium concentration of brewery effluent treated along a 15 m lateral flow CW, which could be attributed to evapotranspiration. This was notably accompanied by a desirable 95.21% decrease in ammonia from inlet to outlet resulting in significant improvement in water quality for reuse in aquaculture where ammonia levels are important limiting constraints. While CWs remain a suitable brewery effluent treatment solution, this technology requires additional modelling and optimisation in order to mitigate the problem of salt accumulation in the reuse of treated brewery effluent in agriculture and aquaculture. This research demonstrates the baseline information for such modelling and optimisation. African catfish (Clarias gariepinus) grew in CW treated brewery effluent; however, this growth was moderate at 0.92% bw day-1, whereas Mozambique tilapia (Oreochromis mossambicus) were shown to be unsuited to growth in this system and lost weight with an average specific growth rate (SGR) of -0.98% bw day-1; and both fish species presenting with health related concerns. Hardy fish species such as African catfish can be cultured in brewery effluent, but with risk involved. This was a preliminary study to develop parameters for future dimensional analysis modelling to allow optimisation of the CW, based on nutrient removal rates obtained which will allow for improved downstream aquaculture by reducing or eliminating risks presented in this study. This work has also contributed to a foundation for the development of guidelines that use a risk-based approach for water use in aquaculture. Alternatives to the current in place cleaning agents were considered to mitigate the effects of salt accumulation. Sodium is introduced into the effluent via the use of sodium hydroxide and sodium chlorite for cleaning and disinfection in the brewery, as well as through effluent pH adjustment in the AD plant. The widespread use of outdated legacy cleaning systems and pH adjustment regimes is entrenched in the brewery standard operating procedures (SOP). A cost-benefit analysis (CBA) demonstrated that a change of cleaning and disinfecting regimes to hydrogen peroxide in the brewery, and magnesium hydroxide pH adjustment in the effluent treatment plant addresses the sodium issue upstream in the brewery practically eliminating sodium from the effluent. In addition, a life cycle analysis (LCA) was carried out to assess the environmental impacts associated with the alternative cleaning and pH adjustment scenarios. The LCA showed that electricity consumption during use phase of the chemicals for respective purposes, as well as their production activities were major contributors to the significant environmental impact categories that were assessed. The cleaning scenario employing the use of hydrogen peroxide for both cleaning and disinfection was found to be the most environmentally sustainable. This was attributed to the reduced number of chemicals used compared to the other cleaning scenarios. Dolomitic lime was the pH adjustment alternative with the lowest average environmental impact; but, however, had a higher impact on freshwater eutrophication which is of major concern if the effluent will be reused for irrigation. Magnesium hydroxide was therefore considered to be the better option as a sodium hydroxide alternative for pH adjustment. This mitigates salt accumulation, making treated brewery effluent suitable for reuse in high value downstream agriculture and aquaculture, while employing more environmentally sustainable technologies. Notably, this converts brewery effluent from a financial liability to Ibhayi Brewery, into a product containing water and nutrients that generate income, improve food security, and can create employment in downstream agriculture and aquaculture in a sustainable manner. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Stock structure of Patagonian toothfish Dissostichus eleginoides (Smitt 1898, family Nototheniidae) in the Southwest Atlantic
- Authors: Lee, Brendon
- Date: 2022-10-14
- Subjects: Otoliths , Patagonian toothfish Geographical distribution , Fish tagging , Biogeography , Microstructure , Microchemistry
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365599 , vital:65763 , DOI https://doi.org/10.21504/10962/365599
- Description: The identification of discrete self-sustaining productive units in marine populations is essential for achieving sustainable fisheries objectives. Marine fish populations frequently exhibit dynamic characteristics across their life-histories, displaying variability in spatial structure and mixing patterns, both within and among populations. The incoherent application of management boundaries on biological populations can bias stock assessment results and have important implications on sustainable fisheries management. Patagonian toothfish (Dissostichus eleginoides) is a long-lived, slow-growing, late-maturing, deep-sea, benthopelagic species. It forms the basis of important and highly lucrative industrial and artisanal fisheries across its distribution. Patagonian toothfish have complex life-histories characterised by high dispersal potential during the egg and larval phase, a wide depth range because of their ontogenetic migratory behaviour, and large adult size that is capable of undertaking long-distance active movements (>200 km). These characteristics provide opportunities for high levels of connectivity, and as such, the stock structure is not well understood. We applied an integrated, multidisciplinary approach to provide an improved understanding of the complex stock structure dynamics for Patagonian toothfish on the Patagonian Shelf, specifically in relation to the shelf, slope, and deep-sea plains around the Falkland Islands. Research results were focused on aspects pertaining to (1) geographic variation in phenotypic characters (otolith shape); (2) a description of the spatial-temporal distribution patterns; (3) the active movements of deep-sea adults (tag-recapture study); and (4) the identification of early life-history dispersal through otolith microstructure and microchemical chronologies. Results from the study indicate high regional connectivity during the early life-history stages derived from at least two spawning contingents into spatially discrete nursery areas (cohort groups) on the Falklands Shelf. Fish followed distinct ontogenetic pathways into deeper waters adjacent to the areas wherein juvenile settlement into a demersal habitat occurred. There is little to no evidence of mixing among cohort groups during their ontogenetic migration into deep-sea adult habitats, reflecting a mixed population based on oceanographically defined egg and larval dispersal. The majority of the adult component of the population continue to display high site fidelity. However, between 9 and 25% of the population, consisting predominantly of larger reproductively capable adults undertake long-distance dispersal behaviour, identified as home-range relocations from the adult deep-sea habitats towards three of the known southern spawning grounds in the region. Results are suggestive of a requirement for improved collaborative efforts for regionally-based management approaches with careful consideration of local stock contingents. Future monitoring and research priorities should focus on the identification of reproductive potential, dispersal pathways and settlement patterns of stock contingents to inform the dynamics of mixed stock origins across the Patagonian region. While many aspects regarding the stock structure remain unresolved, results derived from the current studies can be used to inform the development of management measures to ensure the continued recovery and sustainable management of Patagonian toothfish within the region. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-10-14
Taxonomic, ecological and biogeographic re-evaluation of temperate stream fishes in Southern Africa: a case study of the enteromius anoplus complex
- Authors: Kambikambi, Manda Juliet
- Date: 2021-10-29
- Subjects: Stream ecology South Africa , Barbs (Fish) Ecology South Africa Cape Fold Belt , Barbs (Fish) Ecology South Africa Highveld (Region) , Barbs (Fish) Ecology South Africa Amathole District Municipality , Biotic communities South Africa , Fishes Classification , Cryptic species , Chubbyhead barb
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191023 , vital:45051 , 10.21504/10962/191023
- Description: Worldwide, cryptic species, which comprise two or more distinct species that are classified as one due to their morphological similarity, are more common than previously thought. In South Africa, the chubbyhead barb, Enteromius anoplus (Weber, 1897), is the most widespread freshwater fish species. The widespread occurrence of this species across different river basins raised questions on its taxonomic status due to the likely occurrence of hidden diversity. This further raised the need to evaluate the ecological patterns associated with likely occurrence of such hidden diversity. Phylogenetic analyses of the cytochrome b gene of E. anoplus populations across South Africa revealed the occurrence of four genetically distinct species. These findings supported the restoration Enteromius cernuus (Barnard 1943) stat. rev. from the Olifants River system; the restoration of Enteromius anoplus sensu stricto (Weber 1897) stat. rev. from the Gouritz River system; the redescription of Enteromius oraniensis (Barnard 1943) stat. rev. from the Orange River system; and the description of a new species, Enteromius mandelai sp. nov. from the Eastern Cape rivers. Analyses of morphometric and meristic data revealed that these species were differentiated based on barbel length and number of lateral line scales. Ecological studies on Enteromius mandelai were conducted within headwater streams of major river systems in the Eastern Cape region. These headwater streams had different catchment characteristics ranging from near-natural to anthropogenically-perturbed mainly due to agriculture-related disturbances and invasion of riparian zones by non-native plants. Stable isotope analysis provided evidence of trophic plasticity for E. mandelai across the different headwater streams. Specifically, E. mandelai exhibited large isotopic niches in agriculture-disturbed headwater streams, whereas small isotopic niches were observed in headwater streams invaded by non-native plants. Because of the evidence of trophic plasticity for E. mandelai, this study further hypothesized that this species would exhibit variable environmental niche patterns related to its distribution, abundance and the presence of contra-specifics due to different abiotic factors across its range. Enteromius mandelai was generally most abundant at sites with high total dissolved solids and sand substratum, which was characteristic of large pool habitats, and least abundant at sites with high turbidity. In the Great Fish River, E. mandelai occurred as the only species in most headwater sites, whereas in the Keiskamma and Buffalo River systems, it co-occurred with Amatolacypris trevelyani and Sandelia bainsii. Enteromius mandelai was, nevertheless, found to be ubiquitous together with having wide environmental niches, and exhibited no discernible patterns in its habitat associations. The taxonomic re-evaluation of the E. anoplus complex, which provided evidence of the existence of new species, has implications for the biogeographic zonation of the ichthyofauna of the Cape Fold Ecoregion (CFE), Amathole-Winterberg Highlands Ecoregion (AWHE) and the Southern Temperate Highveld Ecoregion (STHE). For example, the currently recognised southern limit of the STHE, which encompasses the AWHE, is based on the occurrence of E. anoplus, Enteromius pallidus and Labeo umbratus. However, evidence from this and other recent studies indicate the occurrence of either new species or distinct lineages in the southern-most section of the STHE, which is consistent with the patterns observed in the CFE. Comparison of taxonomic composition showed that species in the eastern part of the CFE were similar to species in the AWHE and the southern-most section of the STHE. Because of the close affinities among most of the new taxa in these regions, this study proposes that the current delimitation of the CFE should be reviewed by extending it to include the AWHE and sections of the STHE. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
The link between behavioural plasticity and aerobic scope 1 phenotypes in predicting the survival of Chrysoblephus laticeps 2 under climate variability
- Authors: Bailey, Lauren Ashleigh
- Date: 2023-03-29
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/422606 , vital:71961 , DOI 10.21504/10962/422606
- Description: Thermal variability in the marine environment is likely to have a considerable effect on fishes as it impacts physiological performance and vital (i.e metabolism, foraging and swimming style) and non-vital (i.e. reproductive fitness) energetic processes. When fish are subjected to thermal stress, they may primarily respond by changing their behaviour. Species that have broad phenotypic behavioural plasticity (i.e. defined as the ability to adjust behavioural activity in presiding environmental conditions in order to remain within their optimal thermal range) may have a competitive advantage. Fish behavioural plasticity may take many forms. Some species may seek out thermal refugia by changing their phenology or distribution, while others alter the timing of their seasonal and spawning migrations in response to a changing environment. Although fishes can use behavioural changes to cope with climate change impacts, there does appear to be variability in the behavioural responses within species. However, if alterations in behaviour are insufficient to ensure that the individual remains within their optimal thermal range, physiological acclimation (i.e. defined as the process in which an organism adjusts to prevailing conditions by broadening their thermal performance curve so that their performance is maximized in the new thermal environment) may be required. Therefore, there is a critical link between the behaviour and thermal physiology of fishes, particularly in a world where they are facing increasing thermal stress. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
- Full Text:
- Date Issued: 2023-03-29
The role of angling-guides in promoting pro-environmental catch-and-release attitudes and behaviours in the recreational angling community
- Authors: Farthing, Matthew William
- Date: 2022-04-08
- Subjects: Fishing , Fishing Catch effort , Fishing guides , Fishers , Human behavior , Role models
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/294583 , vital:57235 , DOI 10.21504/10962/294585
- Description: Angling-guides are respected as opinion leaders of the recreational angling community, but nothing is known of their influence on angler behaviour. Given their social-standing, angling-guides may be perceived as role-models by angling-clients – thereby promoting the adoption of best and/or poor catch-and-release (C&R) practices, depending on their individual knowledge, attitudes and behaviour. It is critical to understand their potential influence, their knowledge and their behaviours to inform effective intervention strategies which could exploit their extensive networking potential. The aim of this thesis was to better understand the potential utility of angling-guides in efforts to improve angler behaviour. Firstly, this was done by investigating whether angling-guides are perceived as role-models by angling-clients (Chapter 2). Secondly, it was done by assessing the current level of knowledge, attitudes and behaviours of angling-guides from around the world (Chapter 3). Thirdly, it was done by exploring the relationship between angling-guide knowledge, attitudes, intentions and actual behaviour in a case-study of guided-angling trips (Chapter 4). Lastly, it was done by exploring intervention frameworks and incorporating insights into potential strategies for promoting pro-environmental angling behaviours to angling-guides (Chapter 5). To understand if angling-guides are perceived as role-models by the recreational angling community (Chapter 2), a digital survey was designed to assess previous angling-clients’ attitudes towards angling-guides serving the three role-model functions proposed in the Motivational Theory of Role-Modelling, namely as Behavioural models, Representations of the Possible and Inspiration. Of the 492 angling-clients (27 countries), most agreed that angling-guides were competent, skilled, and worth emulating (91.1%), suggesting they are perceived as Behavioural Models. Less agreed that angling-guides were Inspirational or Representations of the Possible (54.8%), suggesting they are less likely to motivate anglers to adopt and/or pursue new goals. As Behavioural Models, angling-guide C&R practices are likely to be emulated, which is of both utility and concern to managers. As angling-guides are likely to be emulated, a digital survey was designed to assess their knowledge, attitudes and behaviours (particularly C&R best-practices) (Chapter 3). Of the 342 angling-guides (47 countries), few had accredited training (9.4%). However, most were deemed “knowledgeable of best-practices” (69.0%), but pervasive misconceptions of key C&R best-practices were observed. Attitudes towards best-practices were generally pro-environmental, and those deemed knowledgeable had significantly more pro-environmental attitudes (p = 0.003). Most angling-guides had pro-environmental attitudes towards their environmental responsibilities (87.1 - 89.5%), but these broad attitudes cannot predict specific pro-environmental behaviours during guided-angling trips where angler satisfaction is often at odds with best-practice. Angling-client satisfaction has important financial implications for angling-guides, and even those with pro-environmental intentions may struggle to adhere to C&R best-practices with inherent sacrifices for the angling-client’s enjoyment. Observation of behaviour in context is critical for understanding the behaviour to be changed. To explore the relationship between angling-guide knowledge, intentions and actual behaviour (Chapter 4), five angling-guides were observed (and filmed) interacting with groups of angling-clients during their guided-angling trips over a 30 day period. Five angling behaviours of interest were identified, and a survey focussed on these behaviours was disseminated (18 months later) to the five angling-guides previously observed to assess their knowledge, attitudes, reported behaviours and perceptions of the norm. Generally the subjects’ reported behaviours aligned well with their knowledge of best-practice, but their actual behaviour was not well aligned (24.4%). Instead, their actual behaviour aligned better with their perceptions of the norm (80.9%), which was generally a “worse” practice than what they reported. Angling-guides appeared to favour client-satisfaction over pro-environmental behaviour. Gaps between angling-guides’ knowledge of best-practice and their actual behaviour indicate that there may be obscure and complex barriers to pro-environmental angling-guide behaviour. Many barriers are seemingly impossible to overcome, such as economic limitations and financial disincentives. These barriers may limit the efficacy of traditional knowledge-attitude-behaviour (KAB) change interventions. The strong alignment of angling-guide behaviour with social norms, and the strong community orientation of recreational angling suggests that the Community-Based Social Marketing (CBSM) approach may be a more effective framework for interventions that aim to promote pro-environmental catch-and-release behaviours at angling-guide level. The CBSM approach allows interventionists to leverage a larger suite of cognitive biases than KAB approaches, provided that sufficient understanding of the context, barriers and benefits for a given segment of the angling-guide community (likely defined by style-of-participation) are obtained. Furthermore, the success of the CBSM approach will depend on the ability of interventionists to effectively recruit and incentivise disjunct and isolated communities of angling-guides to participate in training and workshops in order to achieve the important in-person contact on which the CBSM approach depends. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
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- Date Issued: 2022-04-08
Towards effective monitoring, control and surveillance policy and implementation in South Africa and its relevance to other Southern African States
- Authors: Fikizolo, Lisolomzi Assaph
- Date: 2021-10-29
- Subjects: Fishery management Africa, Southern , Fisheries Monitoring Africa, Southern , Fishery policy Africa, Southern , Fishery law and legislation Africa, Southern , South Africa. Fisheries Management Branch
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/190886 , vital:45038 , 10.21504/10962/190886
- Description: The responsibility of Fisheries Governance Authorities (FGAs) is to ensure that there is sustainable utilisation and exploitation of marine living resources through effective Monitoring, Control and Surveillance (MCS). MCS is a mechanism used to implement agreed policies, plans and strategies for oceans and fisheries governance, and it is key to their successful implementation. In the continent, the African Union (AU), through its agencies, economic and regional structures encourage and supports national and regional MCS programs. South Africa is a SADC coastal State with a fisheries governance branch mandated to ensure sustainable marine living resources’ utilisation with support from a national MCS program. This support depends on the effectiveness of the current national MCS organisational structure, capacity, legislative and policy framework, as well as regional cooperation. In addition to an extensive literature review, this study developed a MCS framework, following international fisheries legislation and guidelines, for testing the South African MCS’ conformity to such a model. Furthermore, Namibia and Mozambique were included as examples of SADC coastal States to determine their responsiveness to regional cooperation and coordination. Based on the framework, a questionnaire with four parts, Part A: Background Information; Part B: Evaluation of MCS Enablers; Part C: Evaluation of an MCS system process and its effectiveness – reactive approach; and Part D: - proactive approach was developed to collect information. The data was analysed, using appropriate statistical methods to determine, against set characteristics, the level of information that the government respondents could provide to the research topic, and to determine the effectiveness of the South African MCS program. Limited information from Namibia and Mozambique showed readiness in their respective MCS programs for a regional MCS integrated approach, as is the case with South Africa, but there is no serious engagement to implement any regional MCS program. Results showed that the South African MCS program's effectiveness is generally adequate, but there are challenges with planning; financial resources; MCS equipment; stakeholder engagement processes, and governance. A primary recommendation from this study was that business plans, as utilised in the private sector, should be developed by South African Fisheries Governance Authority (FGA) to address MCS governance shortcomings as revealed by this study. A reconfiguration of the MCS organisational structure to include a resource mobilisation unit is considered necessary to effect the much needed improvements. , Thesis (PhD) -- Faculty of Science, Geography, 2021
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- Date Issued: 2021-10-29
Uncoupling the exploitation and climate change effects on the biology of Cape monkfish, Lophius vomerinus Valenciennes 1837 in Namibia
- Authors: Erasmus, Victoria Ndinelago
- Date: 2021-10-29
- Subjects: Lophius Namibia , Lophius Climatic factors Namibia , Lophius Effect of human beings on Namibia , Lophius Food Namibia , Lophius Reproduction Namibia , Lophius Age Namibia , Lophius Growth Namibia , Lophius Habitat Namibia , Lophius Conservation Namibia , Fisheries Namibia , Overfishing Namibia , Fishery management Namibia , Lophius vomerinus (Valenciennes, 1837) , Cape monkfish
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/188329 , vital:44744 , 10.21504/10962/188329
- Description: Cape monkfish, Lophius vomerinus Valenciennes 1837, has supported the Namibian fishing industry for decades, historically as by-catch and recently as a target species. This species is also an important predator in this region. With increasing levels of exploitation and unprecedented climate change, an understanding of the changes in the long-term biological parameters of this species is critical. To date, there has been a scarcity of spatio-temporal studies that have examined and compared the biological aspects of Cape monkfish in relation to climate change and exploitation pressure. Investigations into changes in feeding habits, reproduction strategy, age and growth can provide valuable information for the sustainable management and conservation of this species. This thesis aimed to improve our understanding of the impacts of exploitation and climate variability on the biological parameters of Cape monkfish in the Namibian marine waters, thereby contributing to efforts directed at sustainable harvest and management of this resource. This was achieved through temporal and spatial comparisons of feeding, reproductive scope, age and growth, and catch statistics. The study used data collected during the monkfish swept-area biomass surveys of 2001–2005 and for 2007–2018, hake (deep-water hake Merluccius paradoxus Franca 1960 and shallow-water hake M. capensis Castelnau 1861) swept-area biomass surveys of 2017 and 2019, port sampling programme data collected from April 2014 to December 2019, and monkfish commercial fishing activities collected between April 2001 and December 2019. Based on historical feeding data (1986 – 1987) and contemporary feeding data (2015-2018), Cape monkfish feeds on a variety of prey species from seven groups: Teleost, Cephalopoda, Crustacea, Echinoidea, Elasmobranchii, Gastropod and Porifera. The diet was characterised by a high prevalence of empty stomachs (43.9%), showing low feeding intensity, but most prevalent in juveniles (52.9%). Although the diet composition varied at different life stages, Teleosts (especially deep-water hake Merluccius paradoxus Franca 1960) were the main constituents of the diet for all size classes as per the Index of Relative Importance (%IRI). The results highlight the particular importance of the deep-water hake M. paradoxus (by %IRI) in the diet of Cape monkfish across all size classes. There is a clear dominance of hake in both studies, which means that any overexploitation or climate-driven population decline in hake will most likely have an impact on Cape monkfish. Feeding composition was dependent on the season (p < 0.05), with the type and quantity of prey ingested changing seasonally, showing the ability of Cape monkfish to adjust its diet, depending on possible environmental parameters which consequently influence prey availability. In general, the spatial and temporal variability of the main prey items suggests that the species is highly opportunistic with a broad trophic adaptability. Comparison of historical and contemporary stomach content data indicates that Cape monkfish appear to have changed their diet, probably reflecting the availability of forage species over time and space, possibly due to climate change, fishing pressure, or both. The broad trophic adaptability for Cape monkfish highlights their adaptive potential to increasing anthropogenic stressors such as climate change. However, the dominance of the commercially important deep-water hake, M. paradoxus, in the diet during contemporary times highlights that complex trophic interactions may play a role in altering the northern Benguela fisheries. The general male to female sex ratio was measured at 1:1.67, with significant variation across depth, size class, and year (p < 0.05). Comparison of length at 50% maturity (L50) for Cape monkfish between historical (2004–2006) and contemporary time (2015–2019) showed no significant differences in both sexes, with no significant changes in the L50 for females (χ2 = 1.53, df = 1, p = 0.2154), and males (χ2 = 0.41, df = 1, p = 0.5204) between the two periods. The monthly gonadosomatic index (GSI) showed that Cape monkfish spawn throughout the year with peaks between July and September for females and August for males, similar to those observed 20 years ago. Spawning hotspot areas were identified and were consistently located between 22⁰ and 25⁰S in deeper water (> 250 m) for the 2001–2018 time series. Comparison of the contemporary (2015–2019) proportions of developing, ripe and spent gonads to the historical study data (1996 – 2000) show minimal differences. Ripe ovaries capable of spawning (Stage IV) were dominant in July (23.8%) and August (26.2%), while ripe testes were prevalent in April (52.5%) and November (28.5%). The discovery of the veil (a gelatinous, flat ribbon structure containing individual eggs) off Namibia for the first time (during this study) is a significant because this result provides important reproduction activities information of this species, which were never recorded off Namibia. The location where the veil was discovered, off Swakopmund (22⁰30'S, 13⁰25'E), provides further evidence of the identified spawning hotspot areas, this location is also identified as a monkfish consecutive hotspot fishing area. The ages, growth rates, and length-weight relationships were compared between fish collected during monkfish commercial fishing activities between 1996 and 1998 (Period 1) and during monkfish routine monitoring surveys from 2014 to 2016 (Period 2). A total of 607 (size range: 9–96 cm total length (TL)) and 852 (size range: 9–96 cm TL) Cape monkfish were aged by reading sectioned illicia, during Periods 1 and 2, respectively. The length-weight relationships were W = 0.012L3.035 (r2 = 0.98) and W = 0.014L 2.989 (r2 = 0.98) for females and males, respectively, during Period 1, and W = 0.01L2.97 (r2 = 0.98) and W = 0.01L 3.03 (r2 = 0.98) for females and males, respectively, in Period 2. The growth of Cape monkfish (in cm) for combined sexes was described by Lt = 94(1 − e(−0.10(t−(-0.31))) in Period 1 and Lt = 98(1 − e(−0.10(t−(-0.33))) in Period 2. Females grew significantly faster during Period 1 (LRT results from Maartens et al., 1999), while male and female growth was not significantly different during Period 2 (F = 0.65, p = 0.58). There were no significant differences between the male and female growth curve in Period 2 (F = 0.65, p = 0.58). Although the growth curves are similar between Period 1 and Period 2, the larger fish are in Period 2 are lighter than those in Period 1. This finding is important to the monkfish fishing industry because fish is sold by weight. This finding may suggest that although the fish grow similarly by length, changes in the environmental conditions may have resulted in a reduced condition of the fish. In terms of mean age, the historical Period 1 had a slightly lower mean age of 4.40 compared with a mean age of 5.49 during Period 2. Slight differences were also observed in the age structure between the two periods, with 2-year-olds (20.3%) the most abundant age class in the historical period while 5-year-old fish (18.3%) were most abundant in Period 2. Although the spatial distribution of the catch was not available for Period 1, 0-year-old fish were distributed from 22⁰ to 24⁰S, and 25⁰ to 26⁰S in shallower waters of 166–290 m during Period 2. Only fish between 5 and 16 years old were found off the documented historical nursery area off 28º S. The similar growth curves and spatial overlap of nursery habitats between Period 1 and Period 2 suggest that Cape monkfish may be fairly resilient to the rapid environmental change reported in this region and to the extensive levels of exploitation for the species. However, the recent spatial shifts in the nursery areas are sensitive to disturbance and may indicate that these changes could be having an impact on the early life stages of the species. Continued monitoring may be necessary to understand the consequences of these spatial shifts for the age and growth and resilience of the species. Analysis of the overall spatial and temporal catches of monkfish (both Cape monkfish and shortspine African monkfish) off Namibia between 1998 and 2018 identified noticeable spatio-temporal trends. The pattern of fishing activities for Cape monkfish is heterogeneous, with identified ‘hotspots’ in specific areas. Of particular importance is the consecutive hotspot, between 1998 to 2018 for monkfish fishing activities between 25⁰ and 26⁰ S. The kernel density analysis indicated that the area around 24⁰S, and between 26º and 27 ⁰S, between Walvis Bay and Lüderitz, had the highest total catch densities (~300 kg/km2), suggesting that this is the core of the stock abundance. Annual monkfish catches have fluctuated since the inception of the fishery in 1994, with a drastic decline in the catch recorded after 2003 through to 2018. Generally, there has been an underutilisation of the total allowable catch (TAC) for most of the years. The decrease in catches and the underutilisation of the TAC might be indicative of the reduction in the stock abundance. However, external factors such as lack of capacity of the fishing industry and the administration can contribute to underutilisation of TAC. Basic regression analysis between total monthly catches and monthly sea surface temperature (SST) yielded low r-squared values indicate that in all three grids, only ~ 1% of the variation is explained between SST and total monkfish catches in these areas. The most prominent points to consider from this study are the results of the comparative feeding study (Chapter 3), reproductive indicators (Chapter 4) and age and growth (Chapter 5). Certainly, there have been changes in feeding, demography, and distribution of the species in the last two decades – climate-driven changes were recorded in the feeding habits of Cape monkfish, spatially and temporally – but despite the changes in prey species composition, distribution and abundance in various habits and periods, Cape monkfish was able to switch prey species, reflecting wide trophic adaptability. The dominance of M. paradoxus at all size classes in all analysed habitats is a significant result because. The peak spawning period has remained the same between July and September, as previously reported in Period 1. The consecutive spawning hotspots were identified in the areas between 22º and 25ºS. From a fisheries management perspective, the spawning ground and spawning season should be protected (by means of closure). The evidence of changes in length at 50% maturity presented in this study hints at both climate change and extensive exploitation pressure. The discovery of the veil for the first time in this study is very important; however, it might be sampling related and not driven by climate or exploitation pressure. Finally, the change in the Cape monkfish distribution discussed in Chapter 6 may be attributed to a shift in the distribution or fishing effort as a consequence of shallow water depletion. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
Understanding resource partitioning in three species of Gobiidae living in the warm-temperate Sundays Estuary
- Authors: Ndaleni, Phumza Malibongwe
- Date: 2022-10-14
- Subjects: Gobiidae South Africa Sundays Estuary (Eastern Cape) , Gobiidae Reproduction , Gobiidae Food , Gobiidae Geographical distribution , Gobiidae Morphology , Resource partitioning (Ecology)
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365655 , vital:65773 , DOI https://doi.org/10.21504/10962/365655
- Description: Estuaries represent a transition zone where saline water combines with freshwater, and this results in temporal and spatial variability in both biotic and abiotic parameters. Because the environmental gradient changes so rapidly in areas and the estuarine environment is harsh, fish need to either be able to specialise to one particular suite of abiotic contexts or have the physiological mechanisms to allow them to move throughout the gradient of the estuary. Apart from this, other factors such as climate change, habitat degradation, over exploitation of resources and the introduction of alien species also negatively influence fish species living in estuaries. These anthropogenic stressors can cause species exclusion in areas which were previously suitable for species with particular suites of traits. Measuring resource partitioning within functional groups not only helps in determining the functional structure of communities but also explains how organisms use resources in a community. Resource partitioning studies provide a useful conceptual framework to understand species interactions in a community and identify major resource dimensions along which species segregate. This study aimed to describe resource partitioning among the Gobiidae species, as the family is well represented in South African estuaries (24 species), is highly abundant and has several species which co-exist in individual estuaries. To accomplish this, different forms of resource partitioning that promote the coexistence of the three most abundant species found in warm-temperate South African estuaries; the Knysna sand goby Psammogobius knysnaensis (Smith, 1935), Prison goby Caffrogobius gilchristi (Boulenger, 1898) and River goby Glossogobius callidus (Smith, 1937) were investigated in the Sundays Estuary. This was accomplished by determining the reproductive biology, interspecific differences in feeding morphology, feeding ecology and habitat partitioning among the three species. The distribution and abundance of potential prey in the estuary (mesozooplankton and macrozoobenthic communities) were investigated, with both mesozooplankton and macrozoobenthic communities grouping into three distinct communities along the environmental gradient. Feeding morphological traits responsible for prey location, chasing, capture, mastication, ingestion and digestion were investigated. Little morphological overlap was observed between P. knysnaensis and C. gilchristi, indicating little dietary overlap between these two species. In contrast, the feeding morphology of Glossogobius callidus overlapped with both P. knysnaensis and C. gilchristi, indicating the potential to compete with both species for food. The trophic ecology of the three species was investigated using stomach content analysis, whereby prey abundance, frequency of occurrence and percentage of volume were determined. For P. knysnaensis, the incorporation of cyclopoids and ostracods decreased with fish size and that of bivalves and amphipods increased. Caffrogobius gilchristi was found to be a specialist feeder on cyclopoids but as the species increased in size the incorporation of amphipods, mysids, brachyurans and gastropods increased. Glossogobius callidus was found to be a generalist feeder, feeding on cyclopoids, amphipods and chironomids. The incorporation of cyclopoids decreased with fish size and the consumption of large sized amphipods and chironomids increased with fish size. To assess their reproductive biology, gonadosomatic index (GSI) was used to study the breeding season. In all three species, reproduction peaked in spring and summer, and this is associated with peak phytoplankton and zooplankton biomass in estuaries. Length at 50% maturity and fecundity were also determined. The three species predominated in different locations in the estuary, which explains why they were able to use similar resources and reproduce at the same time. Psammogobius knysnaensis was abundant in the sandy mouth region, with sediment type and prey (bivalves and mysids) availability affecting its distribution. Caffrogobius gilchristi was abundant in the muddy lower reaches of the estuary, with its distribution influenced by sediment composition and temperature. Glossogobius callidus was abundant in the turbid upper reaches, with its distribution influenced by prey (amphipods) availability and turbidity. Different habitat preferences and diet among the specific size ranges enabled coexistence among the species. This explains the high abundances and coexistence of gobies in South African estuaries. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2022
- Full Text:
- Date Issued: 2022-10-14