Phenolic compounds in water and the implications for rapid detection of indicator micro-organisms using ß-D-Galactosidase and ß-D-Glucuronidase
- Authors: Abboo, Sagaran
- Date: 2009
- Subjects: Water -- Purification -- Biological treatment , Pollutants -- Biodegradation , Phenol , Organic water pollutants , Water quality biological assessment , Water -- Pollution
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3978 , http://hdl.handle.net/10962/d1004037 , Water -- Purification -- Biological treatment , Pollutants -- Biodegradation , Phenol , Organic water pollutants , Water quality biological assessment , Water -- Pollution
- Description: Faecal contamination in water is detected using appropriate microbial models such as total coliforms, faecal coliforms and E. coli. Βeta-D-Galactosidase (β-GAL) and Beta-D-glucuronidase (β-GUD) are two marker enzymes that are used to test for the presence of total coliforms and E. coli in water samples, respectively. Various assay methods have been developed using chromogenic and fluorogenic substrates. In this study, the chromogenic substrates chlorophenol red β-D-galactopyranoside (CPRG) for β-GAL and p-nitrophenyl-β-D-galactopyranoside (PNPG) for β-GUD were used. Potential problems associated with this approach include interference from other organisms present in the environment (e.g. plants, algae and other bacteria), as well as the presence of certain chemicals, such as phenolic compounds in water. Phenolic compounds are present in the aquatic environment due to their extensive industrial applications. The USA Enviromental Protection Agency (EPA) lists 11 Priority Pollutant Phenols (PPP) due to their high level of toxicity. This study investigated the interfering effects of the eleven PPP found in water on the enzyme activities of both the β-GAL and β-GUD enzyme assays. The presence of these PPP in the β-GAL and β-GUD enzyme assays showed that over and underestimation of activity may occur due to inhibition or activation of these enzymes. Three types of inhibition to enzyme activities were identified from double reciprocal Lineweaver-Burk plots. The inhibition constants (Ki) were determined for all inhibitory phenolic compounds from appropriate secondary plots. Furthermore, this study presented a validated reverse phase high performance liquid chromatography (RP-HPLC) method, developed for the simultaneous detection, separation and determination of all eleven phenolic compounds found in the environment. This method demonstrated good linearity, reproducibility, accuracy and sensitivity. Environmental water samples were collected from rivers, streams, industrial sites and wastewater treatment plant effluent. These samples were extracted and concentrated using a solid phase extraction (SPE) procedure prior to analysis employing the newly developed HPLC method in this study. Seasonal variations on the presence of the PPP in the environment were observed at certain collection sites. The concentrations found were between 0.033 μg/ml for 2,4-dinitrophenol in a running stream to 0.890 mg/ml for pentachlorophenol from an tannery industrial site. These concentrations of phenolic compounds found in these environments were able to interfere with the β-GAL and β-GUD enzyme assays.
- Full Text:
- Date Issued: 2009
- Authors: Abboo, Sagaran
- Date: 2009
- Subjects: Water -- Purification -- Biological treatment , Pollutants -- Biodegradation , Phenol , Organic water pollutants , Water quality biological assessment , Water -- Pollution
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3978 , http://hdl.handle.net/10962/d1004037 , Water -- Purification -- Biological treatment , Pollutants -- Biodegradation , Phenol , Organic water pollutants , Water quality biological assessment , Water -- Pollution
- Description: Faecal contamination in water is detected using appropriate microbial models such as total coliforms, faecal coliforms and E. coli. Βeta-D-Galactosidase (β-GAL) and Beta-D-glucuronidase (β-GUD) are two marker enzymes that are used to test for the presence of total coliforms and E. coli in water samples, respectively. Various assay methods have been developed using chromogenic and fluorogenic substrates. In this study, the chromogenic substrates chlorophenol red β-D-galactopyranoside (CPRG) for β-GAL and p-nitrophenyl-β-D-galactopyranoside (PNPG) for β-GUD were used. Potential problems associated with this approach include interference from other organisms present in the environment (e.g. plants, algae and other bacteria), as well as the presence of certain chemicals, such as phenolic compounds in water. Phenolic compounds are present in the aquatic environment due to their extensive industrial applications. The USA Enviromental Protection Agency (EPA) lists 11 Priority Pollutant Phenols (PPP) due to their high level of toxicity. This study investigated the interfering effects of the eleven PPP found in water on the enzyme activities of both the β-GAL and β-GUD enzyme assays. The presence of these PPP in the β-GAL and β-GUD enzyme assays showed that over and underestimation of activity may occur due to inhibition or activation of these enzymes. Three types of inhibition to enzyme activities were identified from double reciprocal Lineweaver-Burk plots. The inhibition constants (Ki) were determined for all inhibitory phenolic compounds from appropriate secondary plots. Furthermore, this study presented a validated reverse phase high performance liquid chromatography (RP-HPLC) method, developed for the simultaneous detection, separation and determination of all eleven phenolic compounds found in the environment. This method demonstrated good linearity, reproducibility, accuracy and sensitivity. Environmental water samples were collected from rivers, streams, industrial sites and wastewater treatment plant effluent. These samples were extracted and concentrated using a solid phase extraction (SPE) procedure prior to analysis employing the newly developed HPLC method in this study. Seasonal variations on the presence of the PPP in the environment were observed at certain collection sites. The concentrations found were between 0.033 μg/ml for 2,4-dinitrophenol in a running stream to 0.890 mg/ml for pentachlorophenol from an tannery industrial site. These concentrations of phenolic compounds found in these environments were able to interfere with the β-GAL and β-GUD enzyme assays.
- Full Text:
- Date Issued: 2009
The effect of tulbaghia violacea plant extract on the growth of aspergillus species
- Authors: Belewa, Xoliswa Vuyokazi
- Date: 2009
- Subjects: Plant products , Plant extracts , Traditional medicine
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10315 , http://hdl.handle.net/10948/d1008186 , Plant products , Plant extracts , Traditional medicine
- Description: Traditional medicine has become an important part of healthcare worldwide. It is estimated that about 25 percent of prescribed medicines contain plant products or active compounds derived from plants. In South Africa, traditional medicine forms part of the culture and tradition of most communities. Garlic compounds have been shown to have a variety of antimicrobial properties. Amongst these are antifungal, antibacterial, antiviral and anti protozoal activities. Allicin and its breakdown products have been shown to be the main active compounds which possess these properties. Tulbaghia violacea has been used for the treatment of a variety of illnesses including asthma, fever, oesophageal cancer, constipation and hypertension. This study investigated the antifungal nature of T.violacea on the morphology, spore germination and lipid synthesis of Aspergillus flavus and Aspergillus parasiticus. The results of this study showed that the plant extract inhibited A. flavus growth at a minimal inhibitory concentration of 15mg/ml and was fungicidal at 20mg/ml and above. A. parasiticus was not inhibited at 25mg/ml indicating resistance to the inhibitory component of the plant extract. A measure of metabolic activity using the XTT assay showed reduced metabolic activity in the presence of increasing concentrations of the plant extract. Higher extract concentrations resulted in higher percentage inhibition of fungal growth for both fungal species with up to 98 percent inhibition being observed for the highest extract concentrations for both fungi. Germination was also delayed in the presence of 15mg/ml plant extract concentration by up to 60hr for A. flavus and 48hr for A. parasititcus. The TEM results showed increased thickening of the cell wall with higher extract concentrations. The thickening was greater for A. flavus than for A. parasiticus. Cell wall thickening may be the reason for the delay in germination in both species. Lipid production was reduced in the presence of plant extracts when compared to the control. The plant extracts inhibited triglyceride production at 15mg/ml for both A. flavus and A. parasiticus. The results therefore indicate that T. violacea extracts are antifungal and probably affect germination through interactions with the cell wall. It is possible that the extract affects lipid production in Aspergillus species.
- Full Text:
- Date Issued: 2009
- Authors: Belewa, Xoliswa Vuyokazi
- Date: 2009
- Subjects: Plant products , Plant extracts , Traditional medicine
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10315 , http://hdl.handle.net/10948/d1008186 , Plant products , Plant extracts , Traditional medicine
- Description: Traditional medicine has become an important part of healthcare worldwide. It is estimated that about 25 percent of prescribed medicines contain plant products or active compounds derived from plants. In South Africa, traditional medicine forms part of the culture and tradition of most communities. Garlic compounds have been shown to have a variety of antimicrobial properties. Amongst these are antifungal, antibacterial, antiviral and anti protozoal activities. Allicin and its breakdown products have been shown to be the main active compounds which possess these properties. Tulbaghia violacea has been used for the treatment of a variety of illnesses including asthma, fever, oesophageal cancer, constipation and hypertension. This study investigated the antifungal nature of T.violacea on the morphology, spore germination and lipid synthesis of Aspergillus flavus and Aspergillus parasiticus. The results of this study showed that the plant extract inhibited A. flavus growth at a minimal inhibitory concentration of 15mg/ml and was fungicidal at 20mg/ml and above. A. parasiticus was not inhibited at 25mg/ml indicating resistance to the inhibitory component of the plant extract. A measure of metabolic activity using the XTT assay showed reduced metabolic activity in the presence of increasing concentrations of the plant extract. Higher extract concentrations resulted in higher percentage inhibition of fungal growth for both fungal species with up to 98 percent inhibition being observed for the highest extract concentrations for both fungi. Germination was also delayed in the presence of 15mg/ml plant extract concentration by up to 60hr for A. flavus and 48hr for A. parasititcus. The TEM results showed increased thickening of the cell wall with higher extract concentrations. The thickening was greater for A. flavus than for A. parasiticus. Cell wall thickening may be the reason for the delay in germination in both species. Lipid production was reduced in the presence of plant extracts when compared to the control. The plant extracts inhibited triglyceride production at 15mg/ml for both A. flavus and A. parasiticus. The results therefore indicate that T. violacea extracts are antifungal and probably affect germination through interactions with the cell wall. It is possible that the extract affects lipid production in Aspergillus species.
- Full Text:
- Date Issued: 2009
The effect of load and technique on biomechanical and psychophysical responses to level dynamic pushing and pulling
- Authors: Bennett, Anthea Iona
- Date: 2009
- Subjects: Work -- Physiological aspects , Human engineering -- Case studies , Lifting and carrying -- Case studies , Biomechanics -- Case studies , Musculoskeletal system -- Wounds and injuries
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5110 , http://hdl.handle.net/10962/d1005188 , Work -- Physiological aspects , Human engineering -- Case studies , Lifting and carrying -- Case studies , Biomechanics -- Case studies , Musculoskeletal system -- Wounds and injuries
- Description: Pushing and pulling research has yet to fully elucidate the demands placed on manual workers despite established epidemiological links to musculoskeletal disorders. The current study therefore aimed to quantify biomechanical and perceptual responses of male operators to dynamic pushing and pulling tasks. Three common push/pull techniques (pushing, one handed and two handed pulling) were performed at loads of 250kg and 500kg using an industrial pallet jack in a laboratory environment. Thirty six healthy male subjects (age: 21 ±2 years, stature: 1791 ±43 mm and body mass: 77 ±10 kg) were required to perform six loaded experimental and two unloaded control conditions. Hand force exertion, muscle activity and gait pattern responses were collected during 10m push/pull trials on a coefficient controlled walkway; body discomfort was assessed on completion of the condition. Horizontal hand force responses were significantly (p<0.05) affected by load, with a linear relationship existing between the two. This relationship is determined by specific environmental and trolley factors and is context specific, depending on factors such as trolley maintenance and type of flooring. Hand force exertion responses were tenuously affected by technique at higher loads in the initial and sustained phases, with pushing inducing the greatest hand forces. Comparison of the motion phases revealed significant differences between all three phases, with the initial phase evidencing the greatest hand forces. Muscle activity responses demonstrated that unloaded backward walking evoked significantly higher muscle activation than did unloaded forward walking whilst increased muscular activity during load movement compared to unloaded walking was observed. However increasing load from 250kg to 500kg did not significantly impact the majority of muscle activity responses. When considering technique effects on muscle activity, of the significant differences found, all indicated that pushing imposed the least demand on the musculoskeletal system. Gait pattern responses were not significantly affected by load/technique combinations and were similar to those elicited during normal, unloaded walking. Perceptually, increased load led to increased perception of discomfort while pushing resulted in the least discomfort at both loads. From these psychophysical responses, the calves, shoulders and biceps were identified as areas of potential musculoskeletal injury, particularly during one and two handed pulling. Pushing elicited the highest hand forces and the lowest muscle activity responses in the majority of the conditions whilst psychophysical responses identified this technique as most satisfactory. Current results advocate the use of pushing when moving a load using a wheeled device. Suitability of one and two handed pulling remains contradictory, however results suggest that one handed pulling be employed at lower loads and two handed pulling at higher loads.
- Full Text:
- Date Issued: 2009
- Authors: Bennett, Anthea Iona
- Date: 2009
- Subjects: Work -- Physiological aspects , Human engineering -- Case studies , Lifting and carrying -- Case studies , Biomechanics -- Case studies , Musculoskeletal system -- Wounds and injuries
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5110 , http://hdl.handle.net/10962/d1005188 , Work -- Physiological aspects , Human engineering -- Case studies , Lifting and carrying -- Case studies , Biomechanics -- Case studies , Musculoskeletal system -- Wounds and injuries
- Description: Pushing and pulling research has yet to fully elucidate the demands placed on manual workers despite established epidemiological links to musculoskeletal disorders. The current study therefore aimed to quantify biomechanical and perceptual responses of male operators to dynamic pushing and pulling tasks. Three common push/pull techniques (pushing, one handed and two handed pulling) were performed at loads of 250kg and 500kg using an industrial pallet jack in a laboratory environment. Thirty six healthy male subjects (age: 21 ±2 years, stature: 1791 ±43 mm and body mass: 77 ±10 kg) were required to perform six loaded experimental and two unloaded control conditions. Hand force exertion, muscle activity and gait pattern responses were collected during 10m push/pull trials on a coefficient controlled walkway; body discomfort was assessed on completion of the condition. Horizontal hand force responses were significantly (p<0.05) affected by load, with a linear relationship existing between the two. This relationship is determined by specific environmental and trolley factors and is context specific, depending on factors such as trolley maintenance and type of flooring. Hand force exertion responses were tenuously affected by technique at higher loads in the initial and sustained phases, with pushing inducing the greatest hand forces. Comparison of the motion phases revealed significant differences between all three phases, with the initial phase evidencing the greatest hand forces. Muscle activity responses demonstrated that unloaded backward walking evoked significantly higher muscle activation than did unloaded forward walking whilst increased muscular activity during load movement compared to unloaded walking was observed. However increasing load from 250kg to 500kg did not significantly impact the majority of muscle activity responses. When considering technique effects on muscle activity, of the significant differences found, all indicated that pushing imposed the least demand on the musculoskeletal system. Gait pattern responses were not significantly affected by load/technique combinations and were similar to those elicited during normal, unloaded walking. Perceptually, increased load led to increased perception of discomfort while pushing resulted in the least discomfort at both loads. From these psychophysical responses, the calves, shoulders and biceps were identified as areas of potential musculoskeletal injury, particularly during one and two handed pulling. Pushing elicited the highest hand forces and the lowest muscle activity responses in the majority of the conditions whilst psychophysical responses identified this technique as most satisfactory. Current results advocate the use of pushing when moving a load using a wheeled device. Suitability of one and two handed pulling remains contradictory, however results suggest that one handed pulling be employed at lower loads and two handed pulling at higher loads.
- Full Text:
- Date Issued: 2009
Salinity induced physiological responses in juvenile dusky kob, Argyrosomus japonicus (Sciaenidae)
- Authors: Bernatzeder, Andrea Katinka
- Date: 2009
- Subjects: Osmoregulation , Argyrosomus -- Effects of salt on -- South Africa , Sciaenidae -- Effects of salt on -- South Africa , Argyrosomus -- Physiology , Sciaenidae -- Physiology , Fishes -- Physiology , Biological control systems , Marine ecology -- South Africa , Fishery management -- South Africa , Mariculture -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5318 , http://hdl.handle.net/10962/d1005163 , Osmoregulation , Argyrosomus -- Effects of salt on -- South Africa , Sciaenidae -- Effects of salt on -- South Africa , Argyrosomus -- Physiology , Sciaenidae -- Physiology , Fishes -- Physiology , Biological control systems , Marine ecology -- South Africa , Fishery management -- South Africa , Mariculture -- South Africa
- Description: Fisheries management regulations for dusky kob Argyrosomus japonicus, an important commercial and recreational fisheries species, have failed and the stock is considered collapsed. It is important to take an ecosystems approach to management which includes understanding the effect of environmental factors on recruitment, abundance and distribution. The distribution of early juveniles (20-150 mm TL) in the wild appears to be restricted to the upper reaches of estuaries at salinities below 5 psu. Food availability could not explain the distribution of early juveniles. The aim of this study was to investigate the role of salinity on the distribution of early juvenile dusky kob (<150 mm TL) by examining physiological responses of juveniles exposed to a range of salinities under laboratory conditions. The hypothesis was that the physiological functioning of early juveniles would be optimised at the reduced salinities which they naturally occur at. The objectives of this study were to investigate the effect of salinity on: i) plasma osmolality; ii) growth, food conversion ratio and condition factor; and iii) gill histology with emphasis on chloride cell size and number. A preliminary study was undertaken to determine whether the use of 2-phenoxyethanol had an effect on plasma osmolality. Juveniles pithed prior to blood sampling were used as the control. Plasma osmolality was not affected by exposure or duration of exposure (2, 4, 6, 8, 10 min) to 2-phenoxyethanol. The ability of teleosts to regulate plasma osmolality over a wide range of salinities indicates their degree of ‘physiological euryhalinity’. Plasma osmolality of juveniles exposed to 5, 12 and 35 psu was measured every two weeks over a total of six weeks. Although juveniles were able to regulate plasma osmolality over the duration of the experiment, plasma osmolality at 5 and 12 psu was significantly lower than in fish maintained at 35 psu. Growth is used as an indicator of the relative energy used for osmoregulation at different salinities, as the energy used for osmoregulation becomes unavailable for growth. A nineweek growth experiment was conducted on juveniles exposed to 5, 12 and 35 psu. Juveniles grew and survived at all three salinities. However, growth of juveniles at 5 psu was significantly lower than at 12 and 35 psu. Other than a significantly greater weight gain at 35 psu relative to 12 psu, there was no significant difference in specific growth and length gain between juveniles at 12 and 35 psu. Food conversion ratio and condition factor at 12 and 35 psu were not significantly different, but food conversion ratio and condition factor at 5 psu was significantly greater and lower than at 35 psu respectively. In fish, gills are considered the major organ involved in osmoregulation. Within the gills, chloride cells are the predominant site of ion exchange which is driven by the Na⁺, K⁺- ATPase enzyme. Gill samples of juveniles exposed to 5, 12 and 35 psu for six weeks were examined histologically using light microscopy. Chloride cells of juveniles maintained at 5 psu were significantly more abundant than in juveniles at 12 and 35 psu. Chloride cells of juveniles at 5 psu were significantly larger than in juveniles kept at 12 psu, but not significantly different to those of juveniles kept at 35 psu. The ability of the juvenile fish to regulate plasma osmolality indicates that they are 'physiologically euryhaline', but the reduced growth and proliferation of chloride cells at 5 psu suggests that energy expenditure for osmoregulation is increased at hypoosmotic salinities. Salinity induced physiological responses could therefore not explain the natural distribution of early juvenile dusky kob and it is proposed that other environmental factors (e.g. temperature) are also important. It is also hypothesised that the high conductivity of an estuary in South Africa, to which our understanding is limited, may negate the effect of reduced salinity. Although freshwater input into estuaries is an important factor, further investigations to explain the distribution and abundance of early juveniles is required to make management recommendations. Dusky kob is also becoming an increasingly popular aquaculture species in South Africa. In this regard, early juvenile dusky kob can be grown at salinities as low as 12 psu without negatively affecting growth and production.
- Full Text:
- Date Issued: 2009
- Authors: Bernatzeder, Andrea Katinka
- Date: 2009
- Subjects: Osmoregulation , Argyrosomus -- Effects of salt on -- South Africa , Sciaenidae -- Effects of salt on -- South Africa , Argyrosomus -- Physiology , Sciaenidae -- Physiology , Fishes -- Physiology , Biological control systems , Marine ecology -- South Africa , Fishery management -- South Africa , Mariculture -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5318 , http://hdl.handle.net/10962/d1005163 , Osmoregulation , Argyrosomus -- Effects of salt on -- South Africa , Sciaenidae -- Effects of salt on -- South Africa , Argyrosomus -- Physiology , Sciaenidae -- Physiology , Fishes -- Physiology , Biological control systems , Marine ecology -- South Africa , Fishery management -- South Africa , Mariculture -- South Africa
- Description: Fisheries management regulations for dusky kob Argyrosomus japonicus, an important commercial and recreational fisheries species, have failed and the stock is considered collapsed. It is important to take an ecosystems approach to management which includes understanding the effect of environmental factors on recruitment, abundance and distribution. The distribution of early juveniles (20-150 mm TL) in the wild appears to be restricted to the upper reaches of estuaries at salinities below 5 psu. Food availability could not explain the distribution of early juveniles. The aim of this study was to investigate the role of salinity on the distribution of early juvenile dusky kob (<150 mm TL) by examining physiological responses of juveniles exposed to a range of salinities under laboratory conditions. The hypothesis was that the physiological functioning of early juveniles would be optimised at the reduced salinities which they naturally occur at. The objectives of this study were to investigate the effect of salinity on: i) plasma osmolality; ii) growth, food conversion ratio and condition factor; and iii) gill histology with emphasis on chloride cell size and number. A preliminary study was undertaken to determine whether the use of 2-phenoxyethanol had an effect on plasma osmolality. Juveniles pithed prior to blood sampling were used as the control. Plasma osmolality was not affected by exposure or duration of exposure (2, 4, 6, 8, 10 min) to 2-phenoxyethanol. The ability of teleosts to regulate plasma osmolality over a wide range of salinities indicates their degree of ‘physiological euryhalinity’. Plasma osmolality of juveniles exposed to 5, 12 and 35 psu was measured every two weeks over a total of six weeks. Although juveniles were able to regulate plasma osmolality over the duration of the experiment, plasma osmolality at 5 and 12 psu was significantly lower than in fish maintained at 35 psu. Growth is used as an indicator of the relative energy used for osmoregulation at different salinities, as the energy used for osmoregulation becomes unavailable for growth. A nineweek growth experiment was conducted on juveniles exposed to 5, 12 and 35 psu. Juveniles grew and survived at all three salinities. However, growth of juveniles at 5 psu was significantly lower than at 12 and 35 psu. Other than a significantly greater weight gain at 35 psu relative to 12 psu, there was no significant difference in specific growth and length gain between juveniles at 12 and 35 psu. Food conversion ratio and condition factor at 12 and 35 psu were not significantly different, but food conversion ratio and condition factor at 5 psu was significantly greater and lower than at 35 psu respectively. In fish, gills are considered the major organ involved in osmoregulation. Within the gills, chloride cells are the predominant site of ion exchange which is driven by the Na⁺, K⁺- ATPase enzyme. Gill samples of juveniles exposed to 5, 12 and 35 psu for six weeks were examined histologically using light microscopy. Chloride cells of juveniles maintained at 5 psu were significantly more abundant than in juveniles at 12 and 35 psu. Chloride cells of juveniles at 5 psu were significantly larger than in juveniles kept at 12 psu, but not significantly different to those of juveniles kept at 35 psu. The ability of the juvenile fish to regulate plasma osmolality indicates that they are 'physiologically euryhaline', but the reduced growth and proliferation of chloride cells at 5 psu suggests that energy expenditure for osmoregulation is increased at hypoosmotic salinities. Salinity induced physiological responses could therefore not explain the natural distribution of early juvenile dusky kob and it is proposed that other environmental factors (e.g. temperature) are also important. It is also hypothesised that the high conductivity of an estuary in South Africa, to which our understanding is limited, may negate the effect of reduced salinity. Although freshwater input into estuaries is an important factor, further investigations to explain the distribution and abundance of early juveniles is required to make management recommendations. Dusky kob is also becoming an increasingly popular aquaculture species in South Africa. In this regard, early juvenile dusky kob can be grown at salinities as low as 12 psu without negatively affecting growth and production.
- Full Text:
- Date Issued: 2009
Human-river relationships in the Kat River catchment and the implications for integrated water resource management (IWRM) : an exploraratory study
- Authors: Birkholz, Sharon Alice
- Date: 2009
- Subjects: Aquatic ecology -- South Africa -- Kat River , Rivers -- South Africa -- Kat River -- Sociological aspects , Rivers -- South Africa -- Kat River , Water supply -- South Africa -- Kat River -- Management , Human ecology -- South Africa -- Kat River , Stream ecology -- South Africa -- Kat River
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: vital:4838 , http://hdl.handle.net/10962/d1005514
- Description: Through out this study ‘relational scenarios’ were seen as the possible outcomes of the expression of human-river relationships in a catchment. Working within Inglis’s (2008, pg. 10) comment that ‘the Human World Relationship is expressed through a person’s views and behaviour towards the natural world, which can be either constructive or destructive’, two relational scenarios were selected to represent these two predicted outcomes of human-environment (or in the case of this thesis human-river) relationships: IWRM, seen as constructive and mutually beneficial to both the social and ecological system, and the Tragedy of the Commons, seen as destructive and parasitic in nature. In respect to this assertion, a conceptual framework or model was developed and used to guide the inductive process of this research. Through a social survey (administered via semi-structured interviews) of stakeholders (water-users) in the Kat River Catchment, Eastern Cape, South Africa, social attitudes towards the Kat River were explored. These attitudes were considered as variables that relate to the expression of ‘Human World Relationships’ namely ‘values and behaviour’ (Inglis, 2008, pg. 10). The findings of this thesis confirm that attitudes are influential components of human-river relationships in the Kat River Catchment. It was observed from the findings that the attitudes individuals have towards the Kat River have the potential to influence the ways people interact with the River and its associated resources, and are in turn influenced by the condition of the River and connections people have or make with the River within their daily lives. Such relationships in turn affect the management of the River and its water resources and influence how individuals approach water-related issues and undertake the associated activities. Given this understanding it was then proposed that attitudes could provide information that enables the prediction of likely ‘relational scenarios’ (IWRM or the Tragedy of the Commons) in a catchment. The findings appear to support this proposal, and three main attitude groups (utilitarian, associative and dissociative) were identified and used to further the discussion into how this knowledge could be used in predicting possible relational scenarios based on human-river relationships. Further exploration of the identified attitude groups suggested that these variables are significantly influenced by environmental ethics and place attachment (present in the community) and a series of guiding frameworks were developed to facilitate the exploration of the attitude groups relative to these concepts. The frameworks were generated from the hypothesis that knowledge of attitude groups in a catchment, in connection with the relative degrees to which moral values and worldviews are expressed, could provide insight into the readiness of a catchment system for the implementation of IWRM and/or the facilitative steps needed to shift the influence of unfavourable attitude groups (i.e. dissociative attitudes). Such steps would most likely involve extensive educational, awareness and capacity building programs. Finally, given the above theoretical frameworks, inductively developed from the findings of the social survey and related literature, the conceptual model was reevaluated and extended to include the thesis findings and hypotheses. It is suggested that in a catchment where there is a balance between the expression of utilitarian and associative attitude groups, then there is a high probability of finding present evidence of mutually beneficial human-river relationships already in play, as well as ‘fertile soil’ for the promotion of IWRM and philosophies and skills that generate such relationships. Alternatively in an area with a strong expression of dissociative attitudes, it is more likely to find evidence of destructive, more parasitic-like relationships being expressed, and a lack of commitment and interest in being involved in changing the status quo. It is likely that where both associative and dissociative attitudes are present there will be an overlap of elements of both scenarios – a situation that is probable in most catchments – depending on the strength of expression of either attitude group the balance will shift (be shifting) between the two relational scenarios.
- Full Text:
- Date Issued: 2009
- Authors: Birkholz, Sharon Alice
- Date: 2009
- Subjects: Aquatic ecology -- South Africa -- Kat River , Rivers -- South Africa -- Kat River -- Sociological aspects , Rivers -- South Africa -- Kat River , Water supply -- South Africa -- Kat River -- Management , Human ecology -- South Africa -- Kat River , Stream ecology -- South Africa -- Kat River
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: vital:4838 , http://hdl.handle.net/10962/d1005514
- Description: Through out this study ‘relational scenarios’ were seen as the possible outcomes of the expression of human-river relationships in a catchment. Working within Inglis’s (2008, pg. 10) comment that ‘the Human World Relationship is expressed through a person’s views and behaviour towards the natural world, which can be either constructive or destructive’, two relational scenarios were selected to represent these two predicted outcomes of human-environment (or in the case of this thesis human-river) relationships: IWRM, seen as constructive and mutually beneficial to both the social and ecological system, and the Tragedy of the Commons, seen as destructive and parasitic in nature. In respect to this assertion, a conceptual framework or model was developed and used to guide the inductive process of this research. Through a social survey (administered via semi-structured interviews) of stakeholders (water-users) in the Kat River Catchment, Eastern Cape, South Africa, social attitudes towards the Kat River were explored. These attitudes were considered as variables that relate to the expression of ‘Human World Relationships’ namely ‘values and behaviour’ (Inglis, 2008, pg. 10). The findings of this thesis confirm that attitudes are influential components of human-river relationships in the Kat River Catchment. It was observed from the findings that the attitudes individuals have towards the Kat River have the potential to influence the ways people interact with the River and its associated resources, and are in turn influenced by the condition of the River and connections people have or make with the River within their daily lives. Such relationships in turn affect the management of the River and its water resources and influence how individuals approach water-related issues and undertake the associated activities. Given this understanding it was then proposed that attitudes could provide information that enables the prediction of likely ‘relational scenarios’ (IWRM or the Tragedy of the Commons) in a catchment. The findings appear to support this proposal, and three main attitude groups (utilitarian, associative and dissociative) were identified and used to further the discussion into how this knowledge could be used in predicting possible relational scenarios based on human-river relationships. Further exploration of the identified attitude groups suggested that these variables are significantly influenced by environmental ethics and place attachment (present in the community) and a series of guiding frameworks were developed to facilitate the exploration of the attitude groups relative to these concepts. The frameworks were generated from the hypothesis that knowledge of attitude groups in a catchment, in connection with the relative degrees to which moral values and worldviews are expressed, could provide insight into the readiness of a catchment system for the implementation of IWRM and/or the facilitative steps needed to shift the influence of unfavourable attitude groups (i.e. dissociative attitudes). Such steps would most likely involve extensive educational, awareness and capacity building programs. Finally, given the above theoretical frameworks, inductively developed from the findings of the social survey and related literature, the conceptual model was reevaluated and extended to include the thesis findings and hypotheses. It is suggested that in a catchment where there is a balance between the expression of utilitarian and associative attitude groups, then there is a high probability of finding present evidence of mutually beneficial human-river relationships already in play, as well as ‘fertile soil’ for the promotion of IWRM and philosophies and skills that generate such relationships. Alternatively in an area with a strong expression of dissociative attitudes, it is more likely to find evidence of destructive, more parasitic-like relationships being expressed, and a lack of commitment and interest in being involved in changing the status quo. It is likely that where both associative and dissociative attitudes are present there will be an overlap of elements of both scenarios – a situation that is probable in most catchments – depending on the strength of expression of either attitude group the balance will shift (be shifting) between the two relational scenarios.
- Full Text:
- Date Issued: 2009
The ichthyofauna associated with Taylor's salt marsh, Kariega estuary (Eastern Cape), South Africa
- Authors: Booth, Tara Loren
- Date: 2009
- Subjects: Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5710 , http://hdl.handle.net/10962/d1005396 , Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Description: The spatial and temporal patterns in the ichthyofaunal community composition and structure in Taylor’s salt marsh and adjacent eelgrass beds (Zostera capensis) in the Kariega Estuary, was investigated every two months between May 2006 and March 2007. Total ichthyofaunal abundances and biomass in the salt marsh ranged between 0.55 and 21.7 ind.10m-2 and between 0.03 and 1.9 g.wwt.10m⁻², respectively. There were no significant spatial patterns in the values evident (P > 0.05 in all cases) although seasonal trends were marked, with highest values consistently recorded during the warmer summer months. Investigations into the community structure showed that the ichthyofaunal community within salt marsh was composed almost exclusively of juveniles of estuarine dependant (category II) species, mainly juvenile Mugilidae (<20mm SL) that comprised up to 83% of all fish sampled. Hierarchical cluster analysis and multidimensional scaling did not identify any distinct spatial patterns in the ichthyofaunal community within the salt marsh. The absence of any spatial patterns in the community structure could be related to the absence of any significant spatial patterns in the physico-chemical (temperature, salinity and dissolved oxygen concentrations) and biological (water column and microphytobenthic algal concentrations) variables within the salt marsh (P > 0.05 in all cases). Temporal shifts in the ichthyofaunal community structure within the salt marsh were, however, evident largely reflecting the breeding cycles of individual species within the sub-region. Within the adjacent eelgrass beds, total ichthyofaunal abundances and biomass ranged between 8.4 and 49.4 ind.10m⁻² and between 2.9 and 94.5 g.wwt.10m⁻², respectively. Once again there were no distinct spatial patterns in the abundance and biomass values evident although seasonal patterns were marked. In contrast to the salt marsh, within the in the eelgrass community, there were a large number of adult individuals recorded. Again category II species, the estuarine dependent species, were numerically and gravimetrically dominant. The dominance of category II species reflects the marine dominance of Kariega Estuary. The remaining estuarine utilisation categories did not contribute significantly to abundance or standing stock totals. Hierarchical cluster analysis showed that the salt marsh and eelgrass beds represented two distinct habitats within the Kariega Estuary. Within the salt marsh, the family Mugilidae were numerically dominant contributing 83% of the total catch. Within the eelgrass beds, the sparid, Rhabdosargus holubi and representatives of the family Gobidae contributed 36.3% and 33.9% respectively to the total catch. Estuaries with a wide range of microhabitats have been demonstrated to support a more diverse ichthyofaunal community. Shallow water habitats in general are important areas for juvenile fish within estuaries. Taylor’s salt marsh provides an alternative shallow water habitat, occupied by a distinct ichthyofaunal community composition, with increased food availability and decreased predation pressure, for a wide range of fish species.
- Full Text:
- Date Issued: 2009
- Authors: Booth, Tara Loren
- Date: 2009
- Subjects: Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5710 , http://hdl.handle.net/10962/d1005396 , Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Description: The spatial and temporal patterns in the ichthyofaunal community composition and structure in Taylor’s salt marsh and adjacent eelgrass beds (Zostera capensis) in the Kariega Estuary, was investigated every two months between May 2006 and March 2007. Total ichthyofaunal abundances and biomass in the salt marsh ranged between 0.55 and 21.7 ind.10m-2 and between 0.03 and 1.9 g.wwt.10m⁻², respectively. There were no significant spatial patterns in the values evident (P > 0.05 in all cases) although seasonal trends were marked, with highest values consistently recorded during the warmer summer months. Investigations into the community structure showed that the ichthyofaunal community within salt marsh was composed almost exclusively of juveniles of estuarine dependant (category II) species, mainly juvenile Mugilidae (<20mm SL) that comprised up to 83% of all fish sampled. Hierarchical cluster analysis and multidimensional scaling did not identify any distinct spatial patterns in the ichthyofaunal community within the salt marsh. The absence of any spatial patterns in the community structure could be related to the absence of any significant spatial patterns in the physico-chemical (temperature, salinity and dissolved oxygen concentrations) and biological (water column and microphytobenthic algal concentrations) variables within the salt marsh (P > 0.05 in all cases). Temporal shifts in the ichthyofaunal community structure within the salt marsh were, however, evident largely reflecting the breeding cycles of individual species within the sub-region. Within the adjacent eelgrass beds, total ichthyofaunal abundances and biomass ranged between 8.4 and 49.4 ind.10m⁻² and between 2.9 and 94.5 g.wwt.10m⁻², respectively. Once again there were no distinct spatial patterns in the abundance and biomass values evident although seasonal patterns were marked. In contrast to the salt marsh, within the in the eelgrass community, there were a large number of adult individuals recorded. Again category II species, the estuarine dependent species, were numerically and gravimetrically dominant. The dominance of category II species reflects the marine dominance of Kariega Estuary. The remaining estuarine utilisation categories did not contribute significantly to abundance or standing stock totals. Hierarchical cluster analysis showed that the salt marsh and eelgrass beds represented two distinct habitats within the Kariega Estuary. Within the salt marsh, the family Mugilidae were numerically dominant contributing 83% of the total catch. Within the eelgrass beds, the sparid, Rhabdosargus holubi and representatives of the family Gobidae contributed 36.3% and 33.9% respectively to the total catch. Estuaries with a wide range of microhabitats have been demonstrated to support a more diverse ichthyofaunal community. Shallow water habitats in general are important areas for juvenile fish within estuaries. Taylor’s salt marsh provides an alternative shallow water habitat, occupied by a distinct ichthyofaunal community composition, with increased food availability and decreased predation pressure, for a wide range of fish species.
- Full Text:
- Date Issued: 2009
Production of biologically active recombinant HIV-1 protease and intehrase for the purpose of screening medicianl plant extracts
- Authors: Bosch, Janine
- Date: 2009
- Subjects: Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10325 , http://hdl.handle.net/10948/1056 , Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: Human immunodeficiency virus (HIV) and its gradual weakening of the immune system is an ever growing threat. Acquired immune deficiency syndrome (AIDS), the final stage of HIV, renders a person vulnerable to various opportunistic infections, which in the end lead to death. Apart from intensive vaccine studies, treatment research mainly focuses on preventing the individual HIV enzymes (reverse transcriptase, integrase and protease) from performing their functions. Entry inhibitors, however, block viral entry into the cell, while antisense drugs lock onto the viral genome to keep it from functioning. In this study production of active recombinant HIV-1 protease and integrase was attempted for future drug screening programs. HIV-1 protease was cloned into a pET28b(+) vector and expressed in ROSETTA(DE3)pLysS cells. The protein was purified using a nickel-affinity column utilizing the hexa-histidine tag encoded by the vector. Gel filtration chromatography was attempted after refolding of the protease, but protease yield seemed to decrease with the additional purification step. Partially purified protease was characterized with kinetic studies. Kinetic parameters of HIV-1 protease were determined to be Km = 592 μM, Vmax = 0.59 μM/min and kcat = 31 s-1. HIV-1 integrase, which was cloned into a pET15b vector, was expressed in E. coli BL21(DE3) cells. The coding sequence had been mutated to introduce the amino acid substitutions F185K and C280S, increasing solubility of the protein. The first step in purification of this protein was nickel-affinity chromatography, after which cation exchange chromatography was attempted. HIV-1 integrase concentration was low throughout experiments and no clear elution from the cation exchange column could be observed. A non-radioactive enzyme linked HIV-1 integrase assay failed to detect integrase activity. Modifications to future studies of the integrase are suggested in the chapter involved.
- Full Text:
- Date Issued: 2009
- Authors: Bosch, Janine
- Date: 2009
- Subjects: Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10325 , http://hdl.handle.net/10948/1056 , Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: Human immunodeficiency virus (HIV) and its gradual weakening of the immune system is an ever growing threat. Acquired immune deficiency syndrome (AIDS), the final stage of HIV, renders a person vulnerable to various opportunistic infections, which in the end lead to death. Apart from intensive vaccine studies, treatment research mainly focuses on preventing the individual HIV enzymes (reverse transcriptase, integrase and protease) from performing their functions. Entry inhibitors, however, block viral entry into the cell, while antisense drugs lock onto the viral genome to keep it from functioning. In this study production of active recombinant HIV-1 protease and integrase was attempted for future drug screening programs. HIV-1 protease was cloned into a pET28b(+) vector and expressed in ROSETTA(DE3)pLysS cells. The protein was purified using a nickel-affinity column utilizing the hexa-histidine tag encoded by the vector. Gel filtration chromatography was attempted after refolding of the protease, but protease yield seemed to decrease with the additional purification step. Partially purified protease was characterized with kinetic studies. Kinetic parameters of HIV-1 protease were determined to be Km = 592 μM, Vmax = 0.59 μM/min and kcat = 31 s-1. HIV-1 integrase, which was cloned into a pET15b vector, was expressed in E. coli BL21(DE3) cells. The coding sequence had been mutated to introduce the amino acid substitutions F185K and C280S, increasing solubility of the protein. The first step in purification of this protein was nickel-affinity chromatography, after which cation exchange chromatography was attempted. HIV-1 integrase concentration was low throughout experiments and no clear elution from the cation exchange column could be observed. A non-radioactive enzyme linked HIV-1 integrase assay failed to detect integrase activity. Modifications to future studies of the integrase are suggested in the chapter involved.
- Full Text:
- Date Issued: 2009
A preliminary investigation and photographic atlas of nodules found in the Bokkelveld group (Gydo formation), Steytlerville district, South Africa
- Authors: Browning, Claire
- Date: 2009
- Subjects: Gydo formation -- South Africa , Formations (Geology) -- South Africa -- Western Cape , Formations (Geology) -- South Africa -- Eastern Cape , Groups (Stratigraphy) -- South Africa -- Western Cape , Geology -- Stratigraphic , Bokkeveld group (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10656 , http://hdl.handle.net/10948/927 , Gydo formation -- South Africa , Formations (Geology) -- South Africa -- Western Cape , Formations (Geology) -- South Africa -- Eastern Cape , Groups (Stratigraphy) -- South Africa -- Western Cape , Geology -- Stratigraphic , Bokkeveld group (South Africa)
- Description: Nodules within the lower Bokkeveld shales often contain well-preserved invertebrate fossil material. The aim of this study was to describe some characteristics seen at various scales (macro-, micro- and ultra -) within nodules that might contribute to an understanding of aspects of nodule formation and the reasons for the excellent preservation of the fossil material within these nodules. Detailed, high quality macro-photographs were taken of sliced and whole nodule surfaces and a catalogue was produced to tentatively identify fossils present and illustrate the variations seen within nodules. Selected nodules were then subjected to petrographic, ultra-structural (SEM) and some chemical (EDS, XRD & XRF) analysis to investigate the possible reasons for these variations. The chemical results have indicated that nodules are enriched with quartz compared to the surrounding shale. Quartz is also the dominant mineral replacing trilobite carapace material within nodules, while trilobite material within shales is replaced with equal proportions of hematite, biotite and quartz. It appears that the higher resistance of quartz to weathering is the dominant factor leading to the preservation of both nodules within the shales and trilobite material within the nodules examined. A comparison with some Western Cape nodules highlighted possible variations in overall nodule chemical composition along strike. Western Cape nodules are predominantly composed of apatite whereas the Cockscomb nodules are mainly composed of quartz. This quartz-apatite compositional variation in nodules occurring within a single formation has been reported from nodules found in the Armorican Massif of France which are very similar in a number of respects to the Bokkeveld nodules described in this study. Based on various features of the fossils present and the structure of nodules they were probably formed during early diagenesis within an epeiric marine deposit greatly affected by sea level fluctuations.
- Full Text:
- Date Issued: 2009
- Authors: Browning, Claire
- Date: 2009
- Subjects: Gydo formation -- South Africa , Formations (Geology) -- South Africa -- Western Cape , Formations (Geology) -- South Africa -- Eastern Cape , Groups (Stratigraphy) -- South Africa -- Western Cape , Geology -- Stratigraphic , Bokkeveld group (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10656 , http://hdl.handle.net/10948/927 , Gydo formation -- South Africa , Formations (Geology) -- South Africa -- Western Cape , Formations (Geology) -- South Africa -- Eastern Cape , Groups (Stratigraphy) -- South Africa -- Western Cape , Geology -- Stratigraphic , Bokkeveld group (South Africa)
- Description: Nodules within the lower Bokkeveld shales often contain well-preserved invertebrate fossil material. The aim of this study was to describe some characteristics seen at various scales (macro-, micro- and ultra -) within nodules that might contribute to an understanding of aspects of nodule formation and the reasons for the excellent preservation of the fossil material within these nodules. Detailed, high quality macro-photographs were taken of sliced and whole nodule surfaces and a catalogue was produced to tentatively identify fossils present and illustrate the variations seen within nodules. Selected nodules were then subjected to petrographic, ultra-structural (SEM) and some chemical (EDS, XRD & XRF) analysis to investigate the possible reasons for these variations. The chemical results have indicated that nodules are enriched with quartz compared to the surrounding shale. Quartz is also the dominant mineral replacing trilobite carapace material within nodules, while trilobite material within shales is replaced with equal proportions of hematite, biotite and quartz. It appears that the higher resistance of quartz to weathering is the dominant factor leading to the preservation of both nodules within the shales and trilobite material within the nodules examined. A comparison with some Western Cape nodules highlighted possible variations in overall nodule chemical composition along strike. Western Cape nodules are predominantly composed of apatite whereas the Cockscomb nodules are mainly composed of quartz. This quartz-apatite compositional variation in nodules occurring within a single formation has been reported from nodules found in the Armorican Massif of France which are very similar in a number of respects to the Bokkeveld nodules described in this study. Based on various features of the fossils present and the structure of nodules they were probably formed during early diagenesis within an epeiric marine deposit greatly affected by sea level fluctuations.
- Full Text:
- Date Issued: 2009
An investigation into the hardware abstraction layer of the plural node architecture for IEEE 1394 audio devices
- Authors: Chigwamba, Nyasha
- Date: 2009
- Subjects: IEEE 1394 (Standard) , Digital communications , Computer sound processing , Local area networks (Computer networks) , Computer network architectures , Sound -- Recording and reproducing -- Digital techniques
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4598 , http://hdl.handle.net/10962/d1004841 , IEEE 1394 (Standard) , Digital communications , Computer sound processing , Local area networks (Computer networks) , Computer network architectures , Sound -- Recording and reproducing -- Digital techniques
- Description: Digital audio network technologies are becoming more prevalent in audio related environments. Yamaha Corporation has created a digital audio network solution, named mLAN (music Local Area Network), that uses IEEE 1394 as its underlying network technology. IEEE 1394 is a digital network technology that is specifically designed for real-time multimedia data transmission. The second generation of mLAN is based on the Plural Node Architecture, where the control of audio and MIDI routings between IEEE 1394 devices is split between two node types, namely an Enabler and a Transporter. The Transporter typically resides in an IEEE 1394 device and is solely responsible for transmission and reception of audio or MIDI data. The Enabler typically resides in a workstation and exposes an abstract representation of audio or MIDI plugs on each Transporter to routing control applications. The Enabler is responsible for configuring audio and MIDI routings between plugs on different Transporters. A Hardware Abstraction Layer (HAL) within the Enabler allows it to uniformly communicate with Transporters that are created by various vendors. A plug-in mechanism is used to provide this capability. When vendors create Transporters, they also create device-specific plug-ins for the Enabler. These plug-ins are created against a Transporter HAL Application Programming Interface (API) that defines methods to access the capabilities of Transporters. An Open Generic Transporter (OGT) guideline document which models all the capabilities of Transporters has been produced. These guidelines make it possible for manufacturers to create Transporters that make use of a common plug-in, although based on different hardware architectures. The introduction of the OGT concept has revealed additional Transporter capabilities that are not incorporated in the existing Transporter HAL API. This has led to the underutilisation of OGT capabilities. The main goals of this investigation have been to improve the Enabler’s plug-in mechanism, and to incorporate the additional capabilities that have been revealed by the OGT into the Transporter HAL API. We propose a new plug-in mechanism, and a new Transporter HAL API that fully utilises both the additional capabilities revealed by the OGT and the capabilities of existing Transporters.
- Full Text:
- Date Issued: 2009
- Authors: Chigwamba, Nyasha
- Date: 2009
- Subjects: IEEE 1394 (Standard) , Digital communications , Computer sound processing , Local area networks (Computer networks) , Computer network architectures , Sound -- Recording and reproducing -- Digital techniques
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4598 , http://hdl.handle.net/10962/d1004841 , IEEE 1394 (Standard) , Digital communications , Computer sound processing , Local area networks (Computer networks) , Computer network architectures , Sound -- Recording and reproducing -- Digital techniques
- Description: Digital audio network technologies are becoming more prevalent in audio related environments. Yamaha Corporation has created a digital audio network solution, named mLAN (music Local Area Network), that uses IEEE 1394 as its underlying network technology. IEEE 1394 is a digital network technology that is specifically designed for real-time multimedia data transmission. The second generation of mLAN is based on the Plural Node Architecture, where the control of audio and MIDI routings between IEEE 1394 devices is split between two node types, namely an Enabler and a Transporter. The Transporter typically resides in an IEEE 1394 device and is solely responsible for transmission and reception of audio or MIDI data. The Enabler typically resides in a workstation and exposes an abstract representation of audio or MIDI plugs on each Transporter to routing control applications. The Enabler is responsible for configuring audio and MIDI routings between plugs on different Transporters. A Hardware Abstraction Layer (HAL) within the Enabler allows it to uniformly communicate with Transporters that are created by various vendors. A plug-in mechanism is used to provide this capability. When vendors create Transporters, they also create device-specific plug-ins for the Enabler. These plug-ins are created against a Transporter HAL Application Programming Interface (API) that defines methods to access the capabilities of Transporters. An Open Generic Transporter (OGT) guideline document which models all the capabilities of Transporters has been produced. These guidelines make it possible for manufacturers to create Transporters that make use of a common plug-in, although based on different hardware architectures. The introduction of the OGT concept has revealed additional Transporter capabilities that are not incorporated in the existing Transporter HAL API. This has led to the underutilisation of OGT capabilities. The main goals of this investigation have been to improve the Enabler’s plug-in mechanism, and to incorporate the additional capabilities that have been revealed by the OGT into the Transporter HAL API. We propose a new plug-in mechanism, and a new Transporter HAL API that fully utilises both the additional capabilities revealed by the OGT and the capabilities of existing Transporters.
- Full Text:
- Date Issued: 2009
Corruption and its effects on the development of the construction industry in Malawi
- Chiocha, Charles Injess Martin
- Authors: Chiocha, Charles Injess Martin
- Date: 2009
- Subjects: Contruction industry -- Corrupt practices -- Malawi
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9692 , http://hdl.handle.net/10948/933 , Contruction industry -- Corrupt practices -- Malawi
- Description: The purpose of this study was to investigate corruption and its effects on the development of the construction industry in Malawi. The major causes were identified and probable solutions as well as preventive measures suggested for all stakeholders in the construction industry in Malawi and neighbouring countries to follow in order to combat bribery and corruption. This treatise consisted of a literature review for the causes of bribery, fraud and corruption, effects of corruption on the construction industry, preventive measures, probable solutions to corruption and a descriptive survey involving responses from building and civil engineering contractors, the built environment professionals, home owners, developers, public works officers amongst others from the construction industry in Malawi. According to the literature study, the construction industry is one of the most corrupt industries in the world, which is a huge concern and threat both to governments, investors and humanity at large. This must be addressed by all the official players in the construction industry, from the innovator of a project to the tradesmen employed on that site. The research showed that all players in the construction industry are aware of the impact of corruption on the development of the construction industry in Malawi. Furthermore, there is room for improvement as far as prevention, reduction and elimination of corruption is concerned.
- Full Text:
- Date Issued: 2009
- Authors: Chiocha, Charles Injess Martin
- Date: 2009
- Subjects: Contruction industry -- Corrupt practices -- Malawi
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9692 , http://hdl.handle.net/10948/933 , Contruction industry -- Corrupt practices -- Malawi
- Description: The purpose of this study was to investigate corruption and its effects on the development of the construction industry in Malawi. The major causes were identified and probable solutions as well as preventive measures suggested for all stakeholders in the construction industry in Malawi and neighbouring countries to follow in order to combat bribery and corruption. This treatise consisted of a literature review for the causes of bribery, fraud and corruption, effects of corruption on the construction industry, preventive measures, probable solutions to corruption and a descriptive survey involving responses from building and civil engineering contractors, the built environment professionals, home owners, developers, public works officers amongst others from the construction industry in Malawi. According to the literature study, the construction industry is one of the most corrupt industries in the world, which is a huge concern and threat both to governments, investors and humanity at large. This must be addressed by all the official players in the construction industry, from the innovator of a project to the tradesmen employed on that site. The research showed that all players in the construction industry are aware of the impact of corruption on the development of the construction industry in Malawi. Furthermore, there is room for improvement as far as prevention, reduction and elimination of corruption is concerned.
- Full Text:
- Date Issued: 2009
A feasibility study into the possibility of ionospheric propagation of low VHF (30-35 MHZ) signals between South Africa and Central Africa
- Authors: Coetzee, Petrus Johannes
- Date: 2009
- Subjects: Communications, Military -- South Africa , Communications, Military -- Africa, Central , Digital communications -- South Africa , Digital communications -- Africa, Central , Signals and signaling -- South Africa , Signals and signaling -- Africa, Central , Artificial satellites in telecommunication -- South Africa , Artificial satellites in telecommunication -- Africa, Central , Shortwave radio
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5465 , http://hdl.handle.net/10962/d1005250 , Communications, Military -- South Africa , Communications, Military -- Africa, Central , Digital communications -- South Africa , Digital communications -- Africa, Central , Signals and signaling -- South Africa , Signals and signaling -- Africa, Central , Artificial satellites in telecommunication -- South Africa , Artificial satellites in telecommunication -- Africa, Central , Shortwave radio
- Description: The role of the South African National Defence Force (SANDF) has changed considerably in the last decade. The emphasis has moved from protecting the country's borders to peacekeeping duties in Central Africa and even further North. Communications between the peacekeeping missions and the military bases back in South Africa is vital to ensure the success of these missions. Currently use is made of satellite as well as High Frequency (HF) communications. There are drawbacks associated with these technologies (high cost and low data rates/interference respectively). Successful long distance ionospheric propagation in the low Very High Frequency (VHF) range will complement the existing infrastructure and enhance the success rate of these missions. This thesis presents a feasibility study to determine under what ionospheric conditions such low VHF communications will be possible. The International Reference Ionosphere (IRI) was used to generate ionospheric data for the reflection point(s) of the signal. The peak height of the ionospheric F2 layer (hmF2) was used to calculate the required antenna elevation angle. Once the elevation angle is known it is possible to calculate the required F2 layer critical frequency (foF2). The required foF2 value was calculated by assuming a Maximum Useable Frequency (MUF) of 20% higher than the planned operational frequency. It was determined that single hop propagation is possible during the daytime if the smoothed sunspot number (SSN) exceeds 15. The most challenging requirement for successful single hop propagation is the need of an antenna height of 23 m. For rapid deployment and semi-mobile operations within a jungle environment it may prove to be a formidable obstacle.
- Full Text:
- Date Issued: 2009
- Authors: Coetzee, Petrus Johannes
- Date: 2009
- Subjects: Communications, Military -- South Africa , Communications, Military -- Africa, Central , Digital communications -- South Africa , Digital communications -- Africa, Central , Signals and signaling -- South Africa , Signals and signaling -- Africa, Central , Artificial satellites in telecommunication -- South Africa , Artificial satellites in telecommunication -- Africa, Central , Shortwave radio
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5465 , http://hdl.handle.net/10962/d1005250 , Communications, Military -- South Africa , Communications, Military -- Africa, Central , Digital communications -- South Africa , Digital communications -- Africa, Central , Signals and signaling -- South Africa , Signals and signaling -- Africa, Central , Artificial satellites in telecommunication -- South Africa , Artificial satellites in telecommunication -- Africa, Central , Shortwave radio
- Description: The role of the South African National Defence Force (SANDF) has changed considerably in the last decade. The emphasis has moved from protecting the country's borders to peacekeeping duties in Central Africa and even further North. Communications between the peacekeeping missions and the military bases back in South Africa is vital to ensure the success of these missions. Currently use is made of satellite as well as High Frequency (HF) communications. There are drawbacks associated with these technologies (high cost and low data rates/interference respectively). Successful long distance ionospheric propagation in the low Very High Frequency (VHF) range will complement the existing infrastructure and enhance the success rate of these missions. This thesis presents a feasibility study to determine under what ionospheric conditions such low VHF communications will be possible. The International Reference Ionosphere (IRI) was used to generate ionospheric data for the reflection point(s) of the signal. The peak height of the ionospheric F2 layer (hmF2) was used to calculate the required antenna elevation angle. Once the elevation angle is known it is possible to calculate the required F2 layer critical frequency (foF2). The required foF2 value was calculated by assuming a Maximum Useable Frequency (MUF) of 20% higher than the planned operational frequency. It was determined that single hop propagation is possible during the daytime if the smoothed sunspot number (SSN) exceeds 15. The most challenging requirement for successful single hop propagation is the need of an antenna height of 23 m. For rapid deployment and semi-mobile operations within a jungle environment it may prove to be a formidable obstacle.
- Full Text:
- Date Issued: 2009
Trophodynamics of mesozooplankton in the the vicinity of the subtropical convergence in the Indian sector of the Southern Ocean
- Authors: Daly, Ryan
- Date: 2009
- Subjects: Zooplankton -- Antarctic Ocean , Phytoplankton -- Antarctic Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5791 , http://hdl.handle.net/10962/d1005479 , Zooplankton -- Antarctic Ocean , Phytoplankton -- Antarctic Ocean
- Description: The trophodynamics of the numerically dominant mesozooplankton (200-2000 m) in the vicinity of the Subtropical Convergence (STC) in the Indian sector of the Southern Ocean during austral autumn (April / May) 2007 were investigated as part of the Southern Ocean Ecosystem Variability Study. The survey consisted of six north-south transects each bisecting the STC between 38º to 43ºS and 38º to 41º45’E. In total, 48 stations situated at 30 nautical mile intervals were occupied over a period of ten days. Hydrographic data revealed a well defined surface and sub-surface expression of the STC, which appeared to meander considerably between 41ºS and 41º15’S. Surface chlorophyll-a (chla) concentrations were low, ranging between 0.08 and 0.68 mg chl-a.m-3 and were generally dominated by the picophytoplankton (<2 m) which made up 66.6% (SD±17.6) of the total pigment. Chl-a concentrations integrated over the top 150m of the water column ranged between 11.97 and 40.07 mg chl-a.m-2 and showed no significant spatial patterns (p>0.05). Total integrated mesozooplankton abundance and biomass during the study ranged between 3934.9 and 308521.4 ind.m-2 (mean = 47198.19; SD±62411.4 ind.m-2) and between 239.8 and 4614.3 mg Dwt.m-2 (mean = 1338.58; SD ±1060.5), respectively. Again, there were no significant spatial patterns in the total mesozooplankton abundance or biomass within the region of study (p>0.05). No significant correlations were found between biological (chlorophyll-a concentrations and zooplankton abundance) and physico-chemical variables (temperature and salinity) (p>0.05). The total mesozooplankton community was numerically dominated by copepods of the genera Pleuromamma, Calanus, Oncaea and Oithona. Other important representatives of the mesozooplankton community included the tunicate, Salpa thompsoni, and the pteropod, Limacina retroversa. At the 40% similarity level, numerical analysis identified five distinct mesozooplankton groupings within the survey area. Differences between the groupings were associated with changes in the relative contribution of numerically dominant species rather than the presence or absence of individual species. No groupings were associated with any specific feature of the front within the survey area. The feeding rates of the six most numerically abundant mesozooplankton species (Calanus simillimus, Limacina retroversa, Pleuromamma abdominalis, Clausocalanus breviceps, Oncaea conifera, Salpa thompsoni) accounting for on average 39% of the total mesozooplankton counts, were investigated using the gut fluorescence technique. For all species, the total gut pigment contents during the night time were significantly higher than the daytime values (p<0.05 for all species). The gut evacuation rates (k) for selected mesozooplankton ranged between 0.14 and 0.81 h-1. The ingestion rates ranged between 147.8 and 5495.4 ng(pigm)ind-1.day-1 which corresponded to a daily ration of between 2.4 and 10.9% body carbon. The combined grazing impact of the selected species on the daily phytoplankton standing stock was highly variable and ranged between 1.2 and 174.1% with an average of 27.3% (SD±38.78%) within the survey area. The highest grazing impact (>60%) was typically associated with those stations where the pteropod, L. retroversa, and the tunicate, S. thompsoni, contributed more than 5% of the total mesozooplankton counts. No significant differences were found in the grazing impact of any or all selected species situated either north, south or in the immediate vicinity of the front (p>0.05 in all cases). The lack of defined spatial patterns in the mesozooplankton abundance and community structure suggests that the STC did not act as a significant biogeographic barrier to the distribution of mesozooplankton during the study. It is presumed that the large scale mixing event caused by a storm prior to this study was responsible for the observed lack of elevated biological activity within the region of the STC.
- Full Text:
- Date Issued: 2009
- Authors: Daly, Ryan
- Date: 2009
- Subjects: Zooplankton -- Antarctic Ocean , Phytoplankton -- Antarctic Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5791 , http://hdl.handle.net/10962/d1005479 , Zooplankton -- Antarctic Ocean , Phytoplankton -- Antarctic Ocean
- Description: The trophodynamics of the numerically dominant mesozooplankton (200-2000 m) in the vicinity of the Subtropical Convergence (STC) in the Indian sector of the Southern Ocean during austral autumn (April / May) 2007 were investigated as part of the Southern Ocean Ecosystem Variability Study. The survey consisted of six north-south transects each bisecting the STC between 38º to 43ºS and 38º to 41º45’E. In total, 48 stations situated at 30 nautical mile intervals were occupied over a period of ten days. Hydrographic data revealed a well defined surface and sub-surface expression of the STC, which appeared to meander considerably between 41ºS and 41º15’S. Surface chlorophyll-a (chla) concentrations were low, ranging between 0.08 and 0.68 mg chl-a.m-3 and were generally dominated by the picophytoplankton (<2 m) which made up 66.6% (SD±17.6) of the total pigment. Chl-a concentrations integrated over the top 150m of the water column ranged between 11.97 and 40.07 mg chl-a.m-2 and showed no significant spatial patterns (p>0.05). Total integrated mesozooplankton abundance and biomass during the study ranged between 3934.9 and 308521.4 ind.m-2 (mean = 47198.19; SD±62411.4 ind.m-2) and between 239.8 and 4614.3 mg Dwt.m-2 (mean = 1338.58; SD ±1060.5), respectively. Again, there were no significant spatial patterns in the total mesozooplankton abundance or biomass within the region of study (p>0.05). No significant correlations were found between biological (chlorophyll-a concentrations and zooplankton abundance) and physico-chemical variables (temperature and salinity) (p>0.05). The total mesozooplankton community was numerically dominated by copepods of the genera Pleuromamma, Calanus, Oncaea and Oithona. Other important representatives of the mesozooplankton community included the tunicate, Salpa thompsoni, and the pteropod, Limacina retroversa. At the 40% similarity level, numerical analysis identified five distinct mesozooplankton groupings within the survey area. Differences between the groupings were associated with changes in the relative contribution of numerically dominant species rather than the presence or absence of individual species. No groupings were associated with any specific feature of the front within the survey area. The feeding rates of the six most numerically abundant mesozooplankton species (Calanus simillimus, Limacina retroversa, Pleuromamma abdominalis, Clausocalanus breviceps, Oncaea conifera, Salpa thompsoni) accounting for on average 39% of the total mesozooplankton counts, were investigated using the gut fluorescence technique. For all species, the total gut pigment contents during the night time were significantly higher than the daytime values (p<0.05 for all species). The gut evacuation rates (k) for selected mesozooplankton ranged between 0.14 and 0.81 h-1. The ingestion rates ranged between 147.8 and 5495.4 ng(pigm)ind-1.day-1 which corresponded to a daily ration of between 2.4 and 10.9% body carbon. The combined grazing impact of the selected species on the daily phytoplankton standing stock was highly variable and ranged between 1.2 and 174.1% with an average of 27.3% (SD±38.78%) within the survey area. The highest grazing impact (>60%) was typically associated with those stations where the pteropod, L. retroversa, and the tunicate, S. thompsoni, contributed more than 5% of the total mesozooplankton counts. No significant differences were found in the grazing impact of any or all selected species situated either north, south or in the immediate vicinity of the front (p>0.05 in all cases). The lack of defined spatial patterns in the mesozooplankton abundance and community structure suggests that the STC did not act as a significant biogeographic barrier to the distribution of mesozooplankton during the study. It is presumed that the large scale mixing event caused by a storm prior to this study was responsible for the observed lack of elevated biological activity within the region of the STC.
- Full Text:
- Date Issued: 2009
The contribution of municipal commonage to local people's livelihoods in small South African towns
- Authors: Davenport, Nicholas Ashbury
- Date: 2009
- Subjects: Land tenure -- South Africa , Land reform -- South Africa , Property -- South Africa , Property rights -- South Africa , Commons -- South Africa -- Eastern Cape , Natural resources, Communal -- Management -- South Africa -- Eastern Cape , Rural development -- South Africa -- Eastern Cape , Households -- Economic aspects -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4749 , http://hdl.handle.net/10962/d1006976 , Land tenure -- South Africa , Land reform -- South Africa , Property -- South Africa , Property rights -- South Africa , Commons -- South Africa -- Eastern Cape , Natural resources, Communal -- Management -- South Africa -- Eastern Cape , Rural development -- South Africa -- Eastern Cape , Households -- Economic aspects -- South Africa -- Eastern Cape
- Description: To redress past discrepancies in land tenure, the ANC government acknowledged that land needs to be made accessible to the previously disadvantaged, announcing that commonage would be a pillar of their land reform programme. Municipal commonage is land granted by the state to municipalities for urban households to use. Presently many urbanites in South Africa seek a livelihood from commonage. However, there has been no livelihood valuation of the contribution commonage makes to previously disadvantaged households. Thus there is a need to calculate the benefits of the commonage programme. Through a two phase approach, this thesis investigated firstly, the proportion of township households which use commonage; and the main characteristics of those households. Secondly, the thesis looks at the extent to which commonage contributes to users' livelihoods and the dominant livelihood strategies pursued by user households. Data was collected for three towns in the Eastern Cape province of South Africa; Bathurst, Fort Beaufort, and Grahamstown. Firstly it was found that between 27-70% of households used commonage, with the largest town having the lowest proportion of users, and vice versa for the smallest town. In terms of household characteristics, each study town was unique. Both Bathurst and Grahamstown user households were poorer than non-using households, however all Fort Beaufort households were considered poor. To assess the benefits of the commonage programme, the marketed and non-marketed consumptive direct-use values of land-based livelihoods on commonage were calculated via the 'own reported values' method. Commonage contributions to total livelihoods ranged between 14-20%. If the contributors from commonage were excluded, over 10% of households in each study town would drop to living below the poverty line. Additionally, commonage was being used productively, with the productivity at each study town being worth over R1 000 per hectare and over R4.7 million per commonage. Finally, a typology of subsistence/survivalist commonage users is presented, with four types being identified. Overall, results suggest that commonage use has increased over the last decade. Moreover, due to food inflation and urbanisation the use of commonage is expected to increase further, highlighting the need for holistic commonage management plans to be created, which should include strategies such as sustainable grazing regimes and natural resource management.
- Full Text:
- Date Issued: 2009
- Authors: Davenport, Nicholas Ashbury
- Date: 2009
- Subjects: Land tenure -- South Africa , Land reform -- South Africa , Property -- South Africa , Property rights -- South Africa , Commons -- South Africa -- Eastern Cape , Natural resources, Communal -- Management -- South Africa -- Eastern Cape , Rural development -- South Africa -- Eastern Cape , Households -- Economic aspects -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4749 , http://hdl.handle.net/10962/d1006976 , Land tenure -- South Africa , Land reform -- South Africa , Property -- South Africa , Property rights -- South Africa , Commons -- South Africa -- Eastern Cape , Natural resources, Communal -- Management -- South Africa -- Eastern Cape , Rural development -- South Africa -- Eastern Cape , Households -- Economic aspects -- South Africa -- Eastern Cape
- Description: To redress past discrepancies in land tenure, the ANC government acknowledged that land needs to be made accessible to the previously disadvantaged, announcing that commonage would be a pillar of their land reform programme. Municipal commonage is land granted by the state to municipalities for urban households to use. Presently many urbanites in South Africa seek a livelihood from commonage. However, there has been no livelihood valuation of the contribution commonage makes to previously disadvantaged households. Thus there is a need to calculate the benefits of the commonage programme. Through a two phase approach, this thesis investigated firstly, the proportion of township households which use commonage; and the main characteristics of those households. Secondly, the thesis looks at the extent to which commonage contributes to users' livelihoods and the dominant livelihood strategies pursued by user households. Data was collected for three towns in the Eastern Cape province of South Africa; Bathurst, Fort Beaufort, and Grahamstown. Firstly it was found that between 27-70% of households used commonage, with the largest town having the lowest proportion of users, and vice versa for the smallest town. In terms of household characteristics, each study town was unique. Both Bathurst and Grahamstown user households were poorer than non-using households, however all Fort Beaufort households were considered poor. To assess the benefits of the commonage programme, the marketed and non-marketed consumptive direct-use values of land-based livelihoods on commonage were calculated via the 'own reported values' method. Commonage contributions to total livelihoods ranged between 14-20%. If the contributors from commonage were excluded, over 10% of households in each study town would drop to living below the poverty line. Additionally, commonage was being used productively, with the productivity at each study town being worth over R1 000 per hectare and over R4.7 million per commonage. Finally, a typology of subsistence/survivalist commonage users is presented, with four types being identified. Overall, results suggest that commonage use has increased over the last decade. Moreover, due to food inflation and urbanisation the use of commonage is expected to increase further, highlighting the need for holistic commonage management plans to be created, which should include strategies such as sustainable grazing regimes and natural resource management.
- Full Text:
- Date Issued: 2009
A Speciation study of the chloro-hydroxo complexes of Pt(II)
- Authors: Davis, John Christopher
- Date: 2009
- Subjects: Platinum , Platinum -- Separation , Platinum compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10388 , http://hdl.handle.net/10948/1213 , Platinum , Platinum -- Separation , Platinum compounds
- Description: In this study a method was developed to identify and quantify platinum(II) complexes of the type [PtCl4-n(OH)n]2- and [PtCl4-n(H2O)n]2-n. Separation of the various species was achieved with the aid of a hyphenated reversed phase HPLC-ICP-MS technique coupled with an ion-pairing reagent, HMHDCl2. The adsorption of HMHD2+ onto a C-18 column was investigated by generating a series of breakthrough curves. It was found that the selectivity for high charge density anions originates from its low surface coverage relative to TBA+, which on the other hand could not separate Pt(II) complexes. The peaks in the chromatographic traces were assigned by following the stepwise ligand substitution of [PtCl4]2- in hydroxide medium with UV/Vis spectrophotometry and HPLC-ICP-MS simultaneously. A computer program was written by the author to analyse chromatographic data by deconvoluting the chromatogram into its individual components and calculating the mole fraction of each component. The validity of the consecutive pseudo-first order model was validated by constructing 3D Mauser diagrams with the raw spectrophotometric data (A1 vs A2 vs A3). Additional software was used to simulate the raw spectrophotometric data and processed chromatographic data. The pseudo-first order rate constants obtained in both cases were in agreement with each other. Hence, peaks were assigned to [PtCl4]2-, [PtCl3(OH)]2-, [PtCl2(OH)2]2-, [PtCl3(H2O)]-. The molar extinction coefficient spectra of [PtCl3(OH)]2- and [PtCl2(OH)2]2- were obtained by simulating the spectrophotometric data at wavelengths from 280 to 450 nm. The reaction of [PtCl4]2- with sodium hydroxide was investigated with UV/Vis spectrophotometry at 25 °C. A rate constant consisting of a first and second order term was obtained. The first order term agreed with what has been reported in the literature for aquation of [PtCl4]2- at 25 degrees C. The influence of temperature was established by conducting the experiment at different temperatures. It was found that the reaction proceeds essentially via aquation at elevated temperatures.
- Full Text:
- Date Issued: 2009
- Authors: Davis, John Christopher
- Date: 2009
- Subjects: Platinum , Platinum -- Separation , Platinum compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10388 , http://hdl.handle.net/10948/1213 , Platinum , Platinum -- Separation , Platinum compounds
- Description: In this study a method was developed to identify and quantify platinum(II) complexes of the type [PtCl4-n(OH)n]2- and [PtCl4-n(H2O)n]2-n. Separation of the various species was achieved with the aid of a hyphenated reversed phase HPLC-ICP-MS technique coupled with an ion-pairing reagent, HMHDCl2. The adsorption of HMHD2+ onto a C-18 column was investigated by generating a series of breakthrough curves. It was found that the selectivity for high charge density anions originates from its low surface coverage relative to TBA+, which on the other hand could not separate Pt(II) complexes. The peaks in the chromatographic traces were assigned by following the stepwise ligand substitution of [PtCl4]2- in hydroxide medium with UV/Vis spectrophotometry and HPLC-ICP-MS simultaneously. A computer program was written by the author to analyse chromatographic data by deconvoluting the chromatogram into its individual components and calculating the mole fraction of each component. The validity of the consecutive pseudo-first order model was validated by constructing 3D Mauser diagrams with the raw spectrophotometric data (A1 vs A2 vs A3). Additional software was used to simulate the raw spectrophotometric data and processed chromatographic data. The pseudo-first order rate constants obtained in both cases were in agreement with each other. Hence, peaks were assigned to [PtCl4]2-, [PtCl3(OH)]2-, [PtCl2(OH)2]2-, [PtCl3(H2O)]-. The molar extinction coefficient spectra of [PtCl3(OH)]2- and [PtCl2(OH)2]2- were obtained by simulating the spectrophotometric data at wavelengths from 280 to 450 nm. The reaction of [PtCl4]2- with sodium hydroxide was investigated with UV/Vis spectrophotometry at 25 °C. A rate constant consisting of a first and second order term was obtained. The first order term agreed with what has been reported in the literature for aquation of [PtCl4]2- at 25 degrees C. The influence of temperature was established by conducting the experiment at different temperatures. It was found that the reaction proceeds essentially via aquation at elevated temperatures.
- Full Text:
- Date Issued: 2009
Detecting changes in elephant body condition in relation to resource quality
- Authors: De Klerk, Christelle
- Date: 2009
- Subjects: Elephants -- Nutrition -- South Africa -- Eastern Cape , Elephants -- Habitat -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10704 , http://hdl.handle.net/10948/939 , Elephants -- Nutrition -- South Africa -- Eastern Cape , Elephants -- Habitat -- South Africa -- Eastern Cape
- Description: Elephants, as megaherbivores, are known to have extensive impacts on vegetation, especially in enclosed areas. This raises the issue that elephants in enclosed areas may become limited by resource availability. Resource limitation is generally expressed via density dependence, but elephants, due to their slow demography, may not be affected by initial changes in resource availability. This highlights the need for a more sensitive measure of resource limitation to allow for the detection of energy stress within a population before changes in vital rates occur. This study investigated visual changes in elephant body condition in relation to resource availability in a number of Eastern Cape reserves to assess whether body condition could be used to detect life stages, as well as seasons and sites which may be resource limited. Elephant life stages were divided into energy stressed (newly weaned calves, lactating females, and old females) and non-energy stressed classes (sub-adults and non-lactating females) to determine whether energy stressed life stages were more vulnerable to resource limitation. In the AENP it was found that lactating and old females exhibited significantly poorer body condition than non-energy stressed individuals, but that weaned calves had body conditions similar to non-energy stressed individuals. Comparisons between seasons revealed that all life stages exhibited better condition in winter than summer or spring, with lactating females showing little recovery of condition over time. Seasonal body conditions were correlated with rainfall recorded in the Addo Elephant National Park. Comparisons of elephant body condition between sites (n = 6) revealed that body condition varied across sites, with poorer body condition associated with areas of higher elephant density and low rainfall during the study period. Comparisons with faecal dietary quality data both between sites and seasons indicated that body condition also responded to changes in the availability of protein and neutral detergent fibre (NDF) of plant resources, with higher protein and lower values associated with better condition. Based on condition estimates of elephants occurring in the Addo Main Camp, it was established that this population is experiencing nutritional stress, with energy stressed individuals exhibiting the lowest body conditions. This was supported by dietary quality measures. Our findings suggest that elephant body condition is a good measure for detecting resource limitation, both within populations and between seasons, and that elephant body condition respond to relatively small changes in resource conditions, thus making it an effective measure for the detection of nutritional stress. Additionally, our findings show that energy stressed individuals, particularly lactating and old females are more vulnerable to resource limitation. This demonstrates the importance of monitoring these life stages for the detection of density dependence within populations. Finally, our data suggest that threshold values of faecal dietary quality may exist at which body condition within a population begins to deteriorate, making it possible to determine the condition of a population through values obtained in faecal samples.
- Full Text:
- Date Issued: 2009
- Authors: De Klerk, Christelle
- Date: 2009
- Subjects: Elephants -- Nutrition -- South Africa -- Eastern Cape , Elephants -- Habitat -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10704 , http://hdl.handle.net/10948/939 , Elephants -- Nutrition -- South Africa -- Eastern Cape , Elephants -- Habitat -- South Africa -- Eastern Cape
- Description: Elephants, as megaherbivores, are known to have extensive impacts on vegetation, especially in enclosed areas. This raises the issue that elephants in enclosed areas may become limited by resource availability. Resource limitation is generally expressed via density dependence, but elephants, due to their slow demography, may not be affected by initial changes in resource availability. This highlights the need for a more sensitive measure of resource limitation to allow for the detection of energy stress within a population before changes in vital rates occur. This study investigated visual changes in elephant body condition in relation to resource availability in a number of Eastern Cape reserves to assess whether body condition could be used to detect life stages, as well as seasons and sites which may be resource limited. Elephant life stages were divided into energy stressed (newly weaned calves, lactating females, and old females) and non-energy stressed classes (sub-adults and non-lactating females) to determine whether energy stressed life stages were more vulnerable to resource limitation. In the AENP it was found that lactating and old females exhibited significantly poorer body condition than non-energy stressed individuals, but that weaned calves had body conditions similar to non-energy stressed individuals. Comparisons between seasons revealed that all life stages exhibited better condition in winter than summer or spring, with lactating females showing little recovery of condition over time. Seasonal body conditions were correlated with rainfall recorded in the Addo Elephant National Park. Comparisons of elephant body condition between sites (n = 6) revealed that body condition varied across sites, with poorer body condition associated with areas of higher elephant density and low rainfall during the study period. Comparisons with faecal dietary quality data both between sites and seasons indicated that body condition also responded to changes in the availability of protein and neutral detergent fibre (NDF) of plant resources, with higher protein and lower values associated with better condition. Based on condition estimates of elephants occurring in the Addo Main Camp, it was established that this population is experiencing nutritional stress, with energy stressed individuals exhibiting the lowest body conditions. This was supported by dietary quality measures. Our findings suggest that elephant body condition is a good measure for detecting resource limitation, both within populations and between seasons, and that elephant body condition respond to relatively small changes in resource conditions, thus making it an effective measure for the detection of nutritional stress. Additionally, our findings show that energy stressed individuals, particularly lactating and old females are more vulnerable to resource limitation. This demonstrates the importance of monitoring these life stages for the detection of density dependence within populations. Finally, our data suggest that threshold values of faecal dietary quality may exist at which body condition within a population begins to deteriorate, making it possible to determine the condition of a population through values obtained in faecal samples.
- Full Text:
- Date Issued: 2009
Understanding the complexity of metabolic regulatory systems an investigation into the regulation of hydantoin-hydrolysis in Pseudomonas putida RU-KM3s
- Authors: De la Mare, Jo-Anne
- Date: 2009
- Subjects: Pseudomonas , Hydantoin , Hydrolysis , Enzymes -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3993 , http://hdl.handle.net/10962/d1004053 , Pseudomonas , Hydantoin , Hydrolysis , Enzymes -- Regulation
- Description: It has been well-established that Pseudomonas species possess extremely versatile metabolic systems allowing them to utilise a wide range of nutrient sources and, furthermore, that the regulation of these enzyme systems involves highly evolved and sophisticated regulatory machinery. This study examined the complexity of metabolic regulation in Pseudomonas using the hydantoin-hydrolysing system of the environmental isolate, Pseudomonas putida RU-KM3s. In this system, the genes encoding dihydropyrimidinase and β-ureidopropionase (dhp and bup) are arranged divergently on the chromosome, separated by a 616 bp intergenic region involved in the transcriptional regulation of these genes. The focus was on the transcriptional regulation of dhp expression. DHP activity was found to be sensitive to several environmental signals including growth phase, carbon catabolite repression (CCR), substrate induction and quorum sensing (QS). Bioinformatic analysis of the intergenic region upstream of dhp revealed a number of putative binding sites for transcriptional regulators, including recognition sequences for the alternate sigma factors σ54 and σ38, as well as for the global regulators Anr (for anaerobic regulator) and Vfr (for virulence factor regulator). The targeted disruption of the genes encoding the transcriptional regulators, Vfr and the major CCR protein, Crc, resulted in a partial relief from repression for the vfr- mutant under quorum sensing conditions and a general decrease in activity in the crc- mutant. This data suggested that both Vfr and Crc were involved in regulating DHP activity. Mutational analysis of the dhp promoter revealed that at least two sites were involved in regulating transcriptional activity, one which mediated activation and the other repression. These sites were designated as a putative Anr box, situated 232 bp from the start codon of dhp, and a CRP-like binding site, at a position 213 bp upstream of dhp. Taken together, this data shows the involvement of several global regulatory factors in controlling the expression of dhp. A complex synergistic model was proposed for the transcriptional regulation of dhp, involving alternate sigma factors in addition to both global and specific regulators and responding to a number of environmental signals associated with growth phase, including nutrient availability, cell density and oxygen status.
- Full Text:
- Date Issued: 2009
- Authors: De la Mare, Jo-Anne
- Date: 2009
- Subjects: Pseudomonas , Hydantoin , Hydrolysis , Enzymes -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3993 , http://hdl.handle.net/10962/d1004053 , Pseudomonas , Hydantoin , Hydrolysis , Enzymes -- Regulation
- Description: It has been well-established that Pseudomonas species possess extremely versatile metabolic systems allowing them to utilise a wide range of nutrient sources and, furthermore, that the regulation of these enzyme systems involves highly evolved and sophisticated regulatory machinery. This study examined the complexity of metabolic regulation in Pseudomonas using the hydantoin-hydrolysing system of the environmental isolate, Pseudomonas putida RU-KM3s. In this system, the genes encoding dihydropyrimidinase and β-ureidopropionase (dhp and bup) are arranged divergently on the chromosome, separated by a 616 bp intergenic region involved in the transcriptional regulation of these genes. The focus was on the transcriptional regulation of dhp expression. DHP activity was found to be sensitive to several environmental signals including growth phase, carbon catabolite repression (CCR), substrate induction and quorum sensing (QS). Bioinformatic analysis of the intergenic region upstream of dhp revealed a number of putative binding sites for transcriptional regulators, including recognition sequences for the alternate sigma factors σ54 and σ38, as well as for the global regulators Anr (for anaerobic regulator) and Vfr (for virulence factor regulator). The targeted disruption of the genes encoding the transcriptional regulators, Vfr and the major CCR protein, Crc, resulted in a partial relief from repression for the vfr- mutant under quorum sensing conditions and a general decrease in activity in the crc- mutant. This data suggested that both Vfr and Crc were involved in regulating DHP activity. Mutational analysis of the dhp promoter revealed that at least two sites were involved in regulating transcriptional activity, one which mediated activation and the other repression. These sites were designated as a putative Anr box, situated 232 bp from the start codon of dhp, and a CRP-like binding site, at a position 213 bp upstream of dhp. Taken together, this data shows the involvement of several global regulatory factors in controlling the expression of dhp. A complex synergistic model was proposed for the transcriptional regulation of dhp, involving alternate sigma factors in addition to both global and specific regulators and responding to a number of environmental signals associated with growth phase, including nutrient availability, cell density and oxygen status.
- Full Text:
- Date Issued: 2009
The effect of load and technique on biomechanical and perceptual responses during dynamic pushing and pulling
- Authors: Desai, Sheena Dhiksha
- Date: 2009
- Subjects: Work -- Physiological aspects , Biomechanics , Human engineering , Lifting and carrying
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5109 , http://hdl.handle.net/10962/d1005187 , Work -- Physiological aspects , Biomechanics , Human engineering , Lifting and carrying
- Description: Changes in the industrial job profile, from lifting and lowering to repetitive dynamic pushing and pulling have been facilitated through the use of manual vehicles, aimed at minimising the workload. Yet, the demands of pushing and pulling have not been well documented. Using measures of the horizontal component of the hand forces, spinal kinematics, muscle activity at various sites on the upper body and body discomfort ratings, this study aimed at quantifying the biomechanical and perceptual demands of various dynamic push/pull techniques. 36 healthy male participants performed two-handed forward pushing, two-handed backward pulling and one-handed forward pulling, employing an industrial pallet jack supporting two loads of 250kg or 500kg. While no single technique was definitively identified as preferable regarding hand forces, pushing at 500kg elicited higher initial and sustained forces (p<0.05) than one- and two-handed pulling respectively. Increments in load mass from 250kg to 500kg resulted in significant differences in the initial, sustained and ending forces. With regard to spinal kinematics in the sagittal plane, two-handed pulling elicited the highest trunk flexion, and may therefore expose individuals to prolonged forward bending. Generally this technique was found to evoke the highest sagittal responses. Spinal kinematic measures in the lateral and transverse planes suggested that one-handed pulling was accompanied by the highest measures, and hence the greatest risk of developing lower back disorders related to this plane. Although various combinations of muscles were active during each technique, one-handed pulling and pushing, most often induced the highest muscle activation levels and two-handed pulling, the lowest. While erector spinae evidenced no significant differences between techniques at each load or between loads for the same technique, activation levels were high under all conditions. Perceptual ratings of body discomfort revealed that not only is the upper body susceptible to injuries during pushing and pulling, but also that the lower extremities may have a considerable role to play in these tasks, with the calves being a particular area of concern. Findings concluded that symmetrical pushing and pulling tasks are preferable.
- Full Text:
- Date Issued: 2009
- Authors: Desai, Sheena Dhiksha
- Date: 2009
- Subjects: Work -- Physiological aspects , Biomechanics , Human engineering , Lifting and carrying
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5109 , http://hdl.handle.net/10962/d1005187 , Work -- Physiological aspects , Biomechanics , Human engineering , Lifting and carrying
- Description: Changes in the industrial job profile, from lifting and lowering to repetitive dynamic pushing and pulling have been facilitated through the use of manual vehicles, aimed at minimising the workload. Yet, the demands of pushing and pulling have not been well documented. Using measures of the horizontal component of the hand forces, spinal kinematics, muscle activity at various sites on the upper body and body discomfort ratings, this study aimed at quantifying the biomechanical and perceptual demands of various dynamic push/pull techniques. 36 healthy male participants performed two-handed forward pushing, two-handed backward pulling and one-handed forward pulling, employing an industrial pallet jack supporting two loads of 250kg or 500kg. While no single technique was definitively identified as preferable regarding hand forces, pushing at 500kg elicited higher initial and sustained forces (p<0.05) than one- and two-handed pulling respectively. Increments in load mass from 250kg to 500kg resulted in significant differences in the initial, sustained and ending forces. With regard to spinal kinematics in the sagittal plane, two-handed pulling elicited the highest trunk flexion, and may therefore expose individuals to prolonged forward bending. Generally this technique was found to evoke the highest sagittal responses. Spinal kinematic measures in the lateral and transverse planes suggested that one-handed pulling was accompanied by the highest measures, and hence the greatest risk of developing lower back disorders related to this plane. Although various combinations of muscles were active during each technique, one-handed pulling and pushing, most often induced the highest muscle activation levels and two-handed pulling, the lowest. While erector spinae evidenced no significant differences between techniques at each load or between loads for the same technique, activation levels were high under all conditions. Perceptual ratings of body discomfort revealed that not only is the upper body susceptible to injuries during pushing and pulling, but also that the lower extremities may have a considerable role to play in these tasks, with the calves being a particular area of concern. Findings concluded that symmetrical pushing and pulling tasks are preferable.
- Full Text:
- Date Issued: 2009
Investigation of the microstructure of nuclear grade matrix graphite
- Authors: Downey, Justin Michael
- Date: 2009
- Subjects: Graphite -- South Africa , Microstructure , Nanostructured materials -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10540 , http://hdl.handle.net/10948/944 , Graphite -- South Africa , Microstructure , Nanostructured materials -- South Africa
- Description: This dissertation focuses on the investigation of the microstructures of two nuclear grade matrix graphites. These graphites were intended for use in the core components of a high temperature test reactor (HTTR) of the pebble bed modular reactor (PBMR) design. The graphites were provided in the form of fuel spheres and a reflector block. The techniques used in the analysis of the materials include fracturing, etching, scanning electron microscopy (SEM), nano-indentation, x-ray diffraction (XRD) and transmission electron microscopy (TEM). The microstructures of the materials were characterized successfully. The fuel sphere material consisted of a high concentration of curved graphite flakes and grains in contact with turbostratic matrix graphite. The well graphitized flakes and grains were polycrystalline in nature. Delamination cracks were prevalent in the graphite crystallites. There was no significant difference in the microstructures of the center, interior and surface regions of the fuel sphere material. No evidence of amorphous carbon or resin residues was found. The reflector material consisted of a low concentration of graphite crystallites embedded within turbostratic matrix graphite. Delamination cracks were observed within the graphite crystallites, and many cavities were present in the material. TEM observation also revealed the presence of diamond crystallites. It was concluded that the fuel sphere graphite was most probably suitable for use as is, provided that the material also possessed other required properties for use in a HTTR. The reflector material however was considered to be unsuitable for use in a HTTR. It was thus suggested that the reflector material could be made more suitable by sufficient graphitization of the turbostratic graphite which formed the bulk of the material.
- Full Text:
- Date Issued: 2009
- Authors: Downey, Justin Michael
- Date: 2009
- Subjects: Graphite -- South Africa , Microstructure , Nanostructured materials -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10540 , http://hdl.handle.net/10948/944 , Graphite -- South Africa , Microstructure , Nanostructured materials -- South Africa
- Description: This dissertation focuses on the investigation of the microstructures of two nuclear grade matrix graphites. These graphites were intended for use in the core components of a high temperature test reactor (HTTR) of the pebble bed modular reactor (PBMR) design. The graphites were provided in the form of fuel spheres and a reflector block. The techniques used in the analysis of the materials include fracturing, etching, scanning electron microscopy (SEM), nano-indentation, x-ray diffraction (XRD) and transmission electron microscopy (TEM). The microstructures of the materials were characterized successfully. The fuel sphere material consisted of a high concentration of curved graphite flakes and grains in contact with turbostratic matrix graphite. The well graphitized flakes and grains were polycrystalline in nature. Delamination cracks were prevalent in the graphite crystallites. There was no significant difference in the microstructures of the center, interior and surface regions of the fuel sphere material. No evidence of amorphous carbon or resin residues was found. The reflector material consisted of a low concentration of graphite crystallites embedded within turbostratic matrix graphite. Delamination cracks were observed within the graphite crystallites, and many cavities were present in the material. TEM observation also revealed the presence of diamond crystallites. It was concluded that the fuel sphere graphite was most probably suitable for use as is, provided that the material also possessed other required properties for use in a HTTR. The reflector material however was considered to be unsuitable for use in a HTTR. It was thus suggested that the reflector material could be made more suitable by sufficient graphitization of the turbostratic graphite which formed the bulk of the material.
- Full Text:
- Date Issued: 2009
The effect of temperature and turbidity on spawning chokka squid, loligo reynaudii, in Eastern Cape waters
- Authors: Downey, Nicola Jean
- Date: 2009
- Subjects: Squids -- Effect of temperature on -- South Africa , Squids -- Effect of turbidity on -- South Africa , Squids -- Spawning -- South Africa , Loliginidae -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10719 , http://hdl.handle.net/10948/945 , http://hdl.handle.net/10948/d1012895 , Squids -- Effect of temperature on -- South Africa , Squids -- Effect of turbidity on -- South Africa , Squids -- Spawning -- South Africa , Loliginidae -- South Africa
- Description: Several studies suggest the environment influences chokka squid catches which are mostly based on the successful formation of inshore spawning aggregations. None of the evidence, however, is direct observation. Acoustic telemetry offers a means to determine the response of spawners to changes in the environment and insight into the behaviour of spawning squid. A hexagonal array of VR2 receivers deployed 500 m apart was deemed to be ideal to monitor the movement patterns of squid on the spawning sites. In isothermic conditions, an area up to 1.28 km2 could be monitored as there was an approximate 50 m overlap in individual VR2 receiver range. In thermocline conditions however, “acoustic dead zones” as wide as 350 m may have existed between VR2 receivers, limiting the performance of this configuration. Similarly benthic turbidity events would also decrease detection range and limit performance. A hexagonal array of VR2 receivers was moored in Kromme Bay on and around active spawning aggregations during the squid fishery closed seasons of November 2003, 2004, 2005 and 2006. Squid were caught on jigs and tagged with V9 acoustic pressure telemetry transmitters. A total of 45 animals were tagged. Presence-absence analysis identified three general behaviours: (1) arrival at dawn and departure after dusk, (2) a continuous and uninterrupted presence for a number of days and (3) presence interrupted by frequent but short periods of absence. Overall, the data suggests frequent migrations between spawning aggregations and offshore feeding grounds. The pressure sensor data showed both males and females stayed persistently near the seabed during the day, but at night, this pattern was broken with common activity higher up in the water column. The squid did not remain exclusively in the water column and regularly made excursions to the seabed. CTD and temperature data indicated the intrusion of a cold bottom layer due to upwelling at the monitored spawning sites on a number of occasions. The formation of spawning aggregations appears to be triggered by upwelling events and spawning behaviour, once initiated, disrupted by upwelling events with a rapid onset, possibly due to an inability to adapt physiologically over such a short time period.
- Full Text:
- Date Issued: 2009
- Authors: Downey, Nicola Jean
- Date: 2009
- Subjects: Squids -- Effect of temperature on -- South Africa , Squids -- Effect of turbidity on -- South Africa , Squids -- Spawning -- South Africa , Loliginidae -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10719 , http://hdl.handle.net/10948/945 , http://hdl.handle.net/10948/d1012895 , Squids -- Effect of temperature on -- South Africa , Squids -- Effect of turbidity on -- South Africa , Squids -- Spawning -- South Africa , Loliginidae -- South Africa
- Description: Several studies suggest the environment influences chokka squid catches which are mostly based on the successful formation of inshore spawning aggregations. None of the evidence, however, is direct observation. Acoustic telemetry offers a means to determine the response of spawners to changes in the environment and insight into the behaviour of spawning squid. A hexagonal array of VR2 receivers deployed 500 m apart was deemed to be ideal to monitor the movement patterns of squid on the spawning sites. In isothermic conditions, an area up to 1.28 km2 could be monitored as there was an approximate 50 m overlap in individual VR2 receiver range. In thermocline conditions however, “acoustic dead zones” as wide as 350 m may have existed between VR2 receivers, limiting the performance of this configuration. Similarly benthic turbidity events would also decrease detection range and limit performance. A hexagonal array of VR2 receivers was moored in Kromme Bay on and around active spawning aggregations during the squid fishery closed seasons of November 2003, 2004, 2005 and 2006. Squid were caught on jigs and tagged with V9 acoustic pressure telemetry transmitters. A total of 45 animals were tagged. Presence-absence analysis identified three general behaviours: (1) arrival at dawn and departure after dusk, (2) a continuous and uninterrupted presence for a number of days and (3) presence interrupted by frequent but short periods of absence. Overall, the data suggests frequent migrations between spawning aggregations and offshore feeding grounds. The pressure sensor data showed both males and females stayed persistently near the seabed during the day, but at night, this pattern was broken with common activity higher up in the water column. The squid did not remain exclusively in the water column and regularly made excursions to the seabed. CTD and temperature data indicated the intrusion of a cold bottom layer due to upwelling at the monitored spawning sites on a number of occasions. The formation of spawning aggregations appears to be triggered by upwelling events and spawning behaviour, once initiated, disrupted by upwelling events with a rapid onset, possibly due to an inability to adapt physiologically over such a short time period.
- Full Text:
- Date Issued: 2009
The impact of angling on smallmouth and largemouth yellowfish, labeobarbus aeneus and labeobarbus kimberleyensis, in Lake Gariep, South Africa
- Authors: Ellender, Bruce Robert
- Date: 2009
- Subjects: Barbus aeneus , Largemouth bass , Labeobarbus , Fishing -- South Africa -- Gariep Dam
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5289 , http://hdl.handle.net/10962/d1005133 , Barbus aeneus , Largemouth bass , Labeobarbus , Fishing -- South Africa -- Gariep Dam
- Description: A large sportfishery that targets both smallmouth (Labeobarbus aeneus) and largemouth (Labeobarbus kimberleyensis) yellowfish exists in South Africa. Both species have high conservation priority, and no assessments documenting the effect of angling on L. aeneus and L. kimberleyensis have been undertaken. The overall aim of this study was to provide an assessment of the impact of angling on L. aeneus and L. kimberleyensis. The specific objectives of this study were to characterise the sectors utilising Lake Gariep, document catch, effort and total catch for the fishery as well as the locality specific biology of L. aeneus and L. kimberleyensis. The study was undertaken on Lake Gariep, South Africa's largest impoundment, situated on the Orange River system in central South Africa. Subsistence fishers were the dominant user group, constituting 60 % of the fishery, the remainder constituted recreational anglers. Angler catches were dominated by carp (Cyprinus carpio; 74 %), followed by mudfish (Labeo capensis; 13 %) and smallmouth yellowfish (8 %). Catches of largemouth yellowfish contributed < 0.5 % to the total catch. The relative abundance of species by weight differed by area (χ² test of independence: χ² = 182, df = 4, p ≤ 0.05). On any sampling day time fished was the best predictor for differences in probability of capture (PC) (Wald X²(1) = 7.169, p = 0.007). The probability of capturing L. aeneus differed significantly between month (Wald X²(5) = 20.690, p = 0.000) and region (Wald X²(3) = 46.755, p = 0.000). The single best predictor of differences in log abundance and non-zero CPUE was region (Factorial ANOVA p ≤ 0.05). Mean CPUE ranged from 0.21 ± 0.06 kg. man⁻¹.hr⁻¹ to 0.82 ± 0.11 kg. man⁻¹.hr⁻¹ in the OV region and 0.42 ± 0.10 kg. man⁻¹.hr⁻¹ to 1.17 ± 0.24 kg. man⁻¹.hr⁻¹ in the GD region. Angler effort was higher in OV than in GD and ranged from 17 ± 3 anglers/day to 45 ± 9 anglers/day and 6 ± 1 anglers/day to 41 ± 8 anglers/day, respectively. Total catch was higher in the GD 46.0 [95 % CI = 15:102.6] t. period⁻¹ than the OV region 40.0 [95 % CI = 13.9:89.6] t. period⁻¹. The total catch from the Lake Gariep fishery between March and December 2007 was estimated to be 86.0 [95 % CI = 40.4:154.8] t. period⁻¹. Age and growth was determined using whole otoliths. The growth of L. aeneus was best described by the von Bertalanffy growth model as Lt = 481.80 (1- e⁻°·²²⁽t⁺°·⁶¹⁾). Gonadal development for L. aeneus was seasonal, with the gonadosomatic index peaking in January, revealing a distinct spawning season. The length at 50 % maturity for female L. aeneus was attained at a fork length of 354.7 mm. Natural mortality (M) was estimated at 0.55 year⁻¹. The growth of L. kimberleyensis was described by the von Bertalanffy growth model as Lt = 763.22 (1- e⁻°·¹¹⁽t⁺°·⁶³⁾). Only 6 mature female and 15 mature male L. kimberleyensis were recorded during the study period. The smallest mature female was a 390 mm FL stage four female and the earliest recorded mature male was a 337 mm FL, ripe running male. Natural mortality (M) was estimated at 0.08 year⁻¹ for L. kimberleyensis. Per recruit analysis indicated that current fishing mortality reduces the L. aeneus spawner biomass by 7 %, which is considered negligible. Labeobarbus kimberleyensis forms an insignificant proportion of anglers catches and stock status is currently considered pristine.
- Full Text:
- Date Issued: 2009
- Authors: Ellender, Bruce Robert
- Date: 2009
- Subjects: Barbus aeneus , Largemouth bass , Labeobarbus , Fishing -- South Africa -- Gariep Dam
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5289 , http://hdl.handle.net/10962/d1005133 , Barbus aeneus , Largemouth bass , Labeobarbus , Fishing -- South Africa -- Gariep Dam
- Description: A large sportfishery that targets both smallmouth (Labeobarbus aeneus) and largemouth (Labeobarbus kimberleyensis) yellowfish exists in South Africa. Both species have high conservation priority, and no assessments documenting the effect of angling on L. aeneus and L. kimberleyensis have been undertaken. The overall aim of this study was to provide an assessment of the impact of angling on L. aeneus and L. kimberleyensis. The specific objectives of this study were to characterise the sectors utilising Lake Gariep, document catch, effort and total catch for the fishery as well as the locality specific biology of L. aeneus and L. kimberleyensis. The study was undertaken on Lake Gariep, South Africa's largest impoundment, situated on the Orange River system in central South Africa. Subsistence fishers were the dominant user group, constituting 60 % of the fishery, the remainder constituted recreational anglers. Angler catches were dominated by carp (Cyprinus carpio; 74 %), followed by mudfish (Labeo capensis; 13 %) and smallmouth yellowfish (8 %). Catches of largemouth yellowfish contributed < 0.5 % to the total catch. The relative abundance of species by weight differed by area (χ² test of independence: χ² = 182, df = 4, p ≤ 0.05). On any sampling day time fished was the best predictor for differences in probability of capture (PC) (Wald X²(1) = 7.169, p = 0.007). The probability of capturing L. aeneus differed significantly between month (Wald X²(5) = 20.690, p = 0.000) and region (Wald X²(3) = 46.755, p = 0.000). The single best predictor of differences in log abundance and non-zero CPUE was region (Factorial ANOVA p ≤ 0.05). Mean CPUE ranged from 0.21 ± 0.06 kg. man⁻¹.hr⁻¹ to 0.82 ± 0.11 kg. man⁻¹.hr⁻¹ in the OV region and 0.42 ± 0.10 kg. man⁻¹.hr⁻¹ to 1.17 ± 0.24 kg. man⁻¹.hr⁻¹ in the GD region. Angler effort was higher in OV than in GD and ranged from 17 ± 3 anglers/day to 45 ± 9 anglers/day and 6 ± 1 anglers/day to 41 ± 8 anglers/day, respectively. Total catch was higher in the GD 46.0 [95 % CI = 15:102.6] t. period⁻¹ than the OV region 40.0 [95 % CI = 13.9:89.6] t. period⁻¹. The total catch from the Lake Gariep fishery between March and December 2007 was estimated to be 86.0 [95 % CI = 40.4:154.8] t. period⁻¹. Age and growth was determined using whole otoliths. The growth of L. aeneus was best described by the von Bertalanffy growth model as Lt = 481.80 (1- e⁻°·²²⁽t⁺°·⁶¹⁾). Gonadal development for L. aeneus was seasonal, with the gonadosomatic index peaking in January, revealing a distinct spawning season. The length at 50 % maturity for female L. aeneus was attained at a fork length of 354.7 mm. Natural mortality (M) was estimated at 0.55 year⁻¹. The growth of L. kimberleyensis was described by the von Bertalanffy growth model as Lt = 763.22 (1- e⁻°·¹¹⁽t⁺°·⁶³⁾). Only 6 mature female and 15 mature male L. kimberleyensis were recorded during the study period. The smallest mature female was a 390 mm FL stage four female and the earliest recorded mature male was a 337 mm FL, ripe running male. Natural mortality (M) was estimated at 0.08 year⁻¹ for L. kimberleyensis. Per recruit analysis indicated that current fishing mortality reduces the L. aeneus spawner biomass by 7 %, which is considered negligible. Labeobarbus kimberleyensis forms an insignificant proportion of anglers catches and stock status is currently considered pristine.
- Full Text:
- Date Issued: 2009