The diet of the calanoid copepod, Pseudodiaptomus hessei, in a permanently open southern African estuary inferred from fatty acid analyses
- Noyon, Margaux, Froneman, P William
- Authors: Noyon, Margaux , Froneman, P William
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/70901 , vital:29758 , https://doi.org/10.1093/plankt/fbu037
- Description: The fatty acid (FA) composition of Pseudodiaptomus hessei, one of the most abundant copepod species in southern African estuaries and lakes, reveals potential food selectivity and the importance of flagellate prey in their diets. Differences in FA profiles between males and females were recorded; however, none of these patterns matched the reproductive activities of the copepod. Our findings stress the importance of improving our knowledge of FA biosynthesis pathways to employ fatty acids as trophic markers in feeding studies of zooplankton in temperate environments.
- Full Text:
- Date Issued: 2014
- Authors: Noyon, Margaux , Froneman, P William
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/70901 , vital:29758 , https://doi.org/10.1093/plankt/fbu037
- Description: The fatty acid (FA) composition of Pseudodiaptomus hessei, one of the most abundant copepod species in southern African estuaries and lakes, reveals potential food selectivity and the importance of flagellate prey in their diets. Differences in FA profiles between males and females were recorded; however, none of these patterns matched the reproductive activities of the copepod. Our findings stress the importance of improving our knowledge of FA biosynthesis pathways to employ fatty acids as trophic markers in feeding studies of zooplankton in temperate environments.
- Full Text:
- Date Issued: 2014
Plasmodium falciparum Hop: detailed analysis on complex formation with Hsp70 and Hsp90
- Hatherley, Rowan, Clitheroe, Crystal-Leigh, Faya, Ngonidzashe, Tastan Bishop, Özlem
- Authors: Hatherley, Rowan , Clitheroe, Crystal-Leigh , Faya, Ngonidzashe , Tastan Bishop, Özlem
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125708 , vital:35810 , https://doi.10.1016/j.bbrc.2014.11.103
- Description: The heat shock organizing protein (Hop) is important in modulating the activity and co-interaction of two chaperones: heat shock protein 70 and 90 (Hsp70 and Hsp90). Recent research suggested that Plasmodium falciparum Hop (PfHop), PfHsp70 and PfHsp90 form a complex in the trophozoite infective stage. However, there has been little computational research on the malarial Hop protein in complex with other malarial Hsps. Using in silico characterization of the protein, this work showed that individual domains of Hop are evolving at different rates within the protein. Differences between human Hop (HsHop) and PfHop were identified by motif analysis. Homology modeling of PfHop and HsHop in complex with their own cytosolic Hsp90 and Hsp70 C-terminal peptide partners indicated excellent conservation of the Hop concave TPR sites bound to the C-terminal motifs of partner proteins. Further, we analyzed additional binding sites between Hop and Hsp90, and showed, for the first time, that they are distinctly less conserved between human and malaria parasite. These sites are located on the convex surface of Hop TPR2, and involved in interactions with the Hsp90 middle domain. Since the convex sites are less conserved than the concave sites, it makes their potential for malarial inhibitor design extremely attractive (as opposed to the concave sites which have been the focus of previous efforts).
- Full Text:
- Date Issued: 2015
- Authors: Hatherley, Rowan , Clitheroe, Crystal-Leigh , Faya, Ngonidzashe , Tastan Bishop, Özlem
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125708 , vital:35810 , https://doi.10.1016/j.bbrc.2014.11.103
- Description: The heat shock organizing protein (Hop) is important in modulating the activity and co-interaction of two chaperones: heat shock protein 70 and 90 (Hsp70 and Hsp90). Recent research suggested that Plasmodium falciparum Hop (PfHop), PfHsp70 and PfHsp90 form a complex in the trophozoite infective stage. However, there has been little computational research on the malarial Hop protein in complex with other malarial Hsps. Using in silico characterization of the protein, this work showed that individual domains of Hop are evolving at different rates within the protein. Differences between human Hop (HsHop) and PfHop were identified by motif analysis. Homology modeling of PfHop and HsHop in complex with their own cytosolic Hsp90 and Hsp70 C-terminal peptide partners indicated excellent conservation of the Hop concave TPR sites bound to the C-terminal motifs of partner proteins. Further, we analyzed additional binding sites between Hop and Hsp90, and showed, for the first time, that they are distinctly less conserved between human and malaria parasite. These sites are located on the convex surface of Hop TPR2, and involved in interactions with the Hsp90 middle domain. Since the convex sites are less conserved than the concave sites, it makes their potential for malarial inhibitor design extremely attractive (as opposed to the concave sites which have been the focus of previous efforts).
- Full Text:
- Date Issued: 2015
Real-time monitoring of 3T3-L1 preadipocyte differentiation using a commercially available electric cell-substrate impedance sensor system:
- Kramer, Adam H, Joos-Vandewalle, Julia, Edkins, Adrienne L, Frost, Carminita L, Prinsloo, Earl
- Authors: Kramer, Adam H , Joos-Vandewalle, Julia , Edkins, Adrienne L , Frost, Carminita L , Prinsloo, Earl
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/164830 , vital:41176 , DOI: 10.1016/j.bbrc.2013.12.123
- Description: Real-time analysis offers multiple benefits over traditional end point assays. Here, we present a method of monitoring the optimisation of the growth and differentiation of murine 3T3-L1 preadipocytes to adipocytes using the commercially available ACEA xCELLigence Real-Time Cell Analyser Single Plate (RTCA SP) system. Our findings indicate that the ACEA xCELLigence RTCA SP can reproducibly monitor the primary morphological changes in pre- and post-confluent 3T3-L1 fibroblasts induced to differentiate using insulin, dexamethasone, 3-isobutyl-1-methylxanthine and rosiglitazone; and may be a viable primary method of screening compounds for adipogenic factors.
- Full Text:
- Date Issued: 2014
- Authors: Kramer, Adam H , Joos-Vandewalle, Julia , Edkins, Adrienne L , Frost, Carminita L , Prinsloo, Earl
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/164830 , vital:41176 , DOI: 10.1016/j.bbrc.2013.12.123
- Description: Real-time analysis offers multiple benefits over traditional end point assays. Here, we present a method of monitoring the optimisation of the growth and differentiation of murine 3T3-L1 preadipocytes to adipocytes using the commercially available ACEA xCELLigence Real-Time Cell Analyser Single Plate (RTCA SP) system. Our findings indicate that the ACEA xCELLigence RTCA SP can reproducibly monitor the primary morphological changes in pre- and post-confluent 3T3-L1 fibroblasts induced to differentiate using insulin, dexamethasone, 3-isobutyl-1-methylxanthine and rosiglitazone; and may be a viable primary method of screening compounds for adipogenic factors.
- Full Text:
- Date Issued: 2014
Sanitation policy and prevention of environmental contamination in South Africa
- Hoossein, Shafick, Whittington-Jones, Kevin J, Tandlich, Roman
- Authors: Hoossein, Shafick , Whittington-Jones, Kevin J , Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76834 , vital:30628 , DOI:10.30638/eemj.2014.141
- Description: Prior to 1994, 21 million people were without access to sanitation in South Africa. Progress towards the backlog elimination started after 1994, but was slow-paced. From 1994 until 2011, the sanitation backlog has been decreased by between 29.8 and 79.2 % from the 1994 levels, depending on the province. Mechanisms were created for implementation of sanitation projects, but this was marginally successful and risk of environmental pollution from sanitation persisted. The period between 2009 and present day seemed to have brought on a significant fast-tracking of sanitation project around South Africa. This coincides with the transfer of oversight and partial implementation responsibility to the Department of Human Settlement and the launch of the Rural Household Infrastructure Programme. It also originated from the integrated programmes which drew in input from all stakeholders at the national and local government levels. Limitations still exist in maintenance and sanitation skills’ portfolio of some local municipalities, mainly in the Eastern Cape and Limpopo Province. However, the present status is still in partial conflict with government aims, legislation and policies. Novel tools such as the Technology Assessment and the Environmental Technology Assessment will have to be implemented in the sanitation decision-making and the novel strategies for skills development will have to be devised. If sufficient maintenance skills are developed in a local municipal area, then this will prevent negative environmental effects and results in lowered sanitation-related environmental contamination. Improvement in can be expected from the new national Department of Water Affairs and Sanitation.
- Full Text: false
- Date Issued: 2014
- Authors: Hoossein, Shafick , Whittington-Jones, Kevin J , Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76834 , vital:30628 , DOI:10.30638/eemj.2014.141
- Description: Prior to 1994, 21 million people were without access to sanitation in South Africa. Progress towards the backlog elimination started after 1994, but was slow-paced. From 1994 until 2011, the sanitation backlog has been decreased by between 29.8 and 79.2 % from the 1994 levels, depending on the province. Mechanisms were created for implementation of sanitation projects, but this was marginally successful and risk of environmental pollution from sanitation persisted. The period between 2009 and present day seemed to have brought on a significant fast-tracking of sanitation project around South Africa. This coincides with the transfer of oversight and partial implementation responsibility to the Department of Human Settlement and the launch of the Rural Household Infrastructure Programme. It also originated from the integrated programmes which drew in input from all stakeholders at the national and local government levels. Limitations still exist in maintenance and sanitation skills’ portfolio of some local municipalities, mainly in the Eastern Cape and Limpopo Province. However, the present status is still in partial conflict with government aims, legislation and policies. Novel tools such as the Technology Assessment and the Environmental Technology Assessment will have to be implemented in the sanitation decision-making and the novel strategies for skills development will have to be devised. If sufficient maintenance skills are developed in a local municipal area, then this will prevent negative environmental effects and results in lowered sanitation-related environmental contamination. Improvement in can be expected from the new national Department of Water Affairs and Sanitation.
- Full Text: false
- Date Issued: 2014
Interactive efficacies of Elephantorrhiza elephantina and Pentanisia prunelloides extracts and isolated compounds against gastrointestinal bacteria
- Mpofu, Smart J, Olivier, D K, Krause, Rui W M, Ndinteh, Derek T, Van Vuuren, S
- Authors: Mpofu, Smart J , Olivier, D K , Krause, Rui W M , Ndinteh, Derek T , Van Vuuren, S
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124122 , vital:35552 , https://doi.org/10.1016/j.sajb.2014.07.002
- Description: Elephantorrhiza elephantina (Burch.) Skeels (Fabaceae) and Pentanisia prunelloides (Klotzsch ex Eckl. & Zeyh.) Walp. (Rubiaceae) are two medicinal plants used extensively in southern Africa to treat various ailments. Often, decoctions and infusions from these two plants are used in combination specifically for stomach ailments. The antimicrobial activities of the methanol and aqueous extracts of the rhizomes of the two plants, as well as the two active ingredients from the plants [(−)-epicatechin and palmitic acid] have been determined apart and in combination against Enterococcus faecalis (ATCC 29212), Escherichia coli (ATCC 8739) and Bacillus cereus (ATCC 11778). The minimum inhibitory concentration (MIC) values for the aqueous (0.50–16.00 mg/mL) and methanol (0.20–16.00 mg/mL) extracts independently demonstrated varied efficacies depending on the pathogen of study. When the two plants were combined in 1:1 ratios, synergistic to additive interactions (ΣFIC values 0.19–1.00) were noted. Efficacy for the two major compounds ranged between 0.13–0.63 mg/mL and mainly synergistic interactions were noted against E. faecalis and E. coli. The predominantly synergistic interactions noted between E. elephantina and P. prunelloides and major compounds, when tested in various ratios against these pathogens, provide some validation as to the traditional use of these two plants to treat bacterial gastrointestinal infections.
- Full Text:
- Date Issued: 2014
- Authors: Mpofu, Smart J , Olivier, D K , Krause, Rui W M , Ndinteh, Derek T , Van Vuuren, S
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124122 , vital:35552 , https://doi.org/10.1016/j.sajb.2014.07.002
- Description: Elephantorrhiza elephantina (Burch.) Skeels (Fabaceae) and Pentanisia prunelloides (Klotzsch ex Eckl. & Zeyh.) Walp. (Rubiaceae) are two medicinal plants used extensively in southern Africa to treat various ailments. Often, decoctions and infusions from these two plants are used in combination specifically for stomach ailments. The antimicrobial activities of the methanol and aqueous extracts of the rhizomes of the two plants, as well as the two active ingredients from the plants [(−)-epicatechin and palmitic acid] have been determined apart and in combination against Enterococcus faecalis (ATCC 29212), Escherichia coli (ATCC 8739) and Bacillus cereus (ATCC 11778). The minimum inhibitory concentration (MIC) values for the aqueous (0.50–16.00 mg/mL) and methanol (0.20–16.00 mg/mL) extracts independently demonstrated varied efficacies depending on the pathogen of study. When the two plants were combined in 1:1 ratios, synergistic to additive interactions (ΣFIC values 0.19–1.00) were noted. Efficacy for the two major compounds ranged between 0.13–0.63 mg/mL and mainly synergistic interactions were noted against E. faecalis and E. coli. The predominantly synergistic interactions noted between E. elephantina and P. prunelloides and major compounds, when tested in various ratios against these pathogens, provide some validation as to the traditional use of these two plants to treat bacterial gastrointestinal infections.
- Full Text:
- Date Issued: 2014
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