A histological description of ovarian recrudescence in two Labeo victorianus populations
- Booth, Anthony J, Hecht, Thomas
- Authors: Booth, Anthony J , Hecht, Thomas
- Date: 2010
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123564 , vital:35455 , https://doi.org/10.2989/16085910409503813
- Description: The ovaries of Labeo victorianus are paired organs situated in the peritoneal cavity and suspended on either side of the midline by a mesovarium. A capsule, composed of dense, regularly-arranged collagen and elastic fibres mixed with a few smooth muscle cells, enclosed the ovaries and gave off connective tissue septa, forming the ovigerous lamellae, which contained germ and follicle cells. Eight discrete stages of recrudescence were identified: oogonia, chromatin nucleolar oocytes, perinucleolar oocytes, primary yolk vesicle oocytes, secondary yolk vesicle oocytes, tertiary yolk vesicle oocytes, post-ovulatory follicles and atretic oocytes. Ovulation seemed to be synchronised with the onset of rainfall, with some deviations in the Sio River population. Gonadosomatic index variation followed a bimodal pattern, with maxima between January–February and between September–October for both populations. The same pattern was exhibited for both rainfall and water levels at the two study sites. Successful ovulation was followed by the formation of post-ovulatory follicles and Type I atresia, while failed spawning was characterised by Type II atresia. Clearance of post-ovulatory follicles was by phagocytosis and formation of melanomacrophage centres. There were variations in post-ovulatory changes between the two populations. Reproductive patterns in the Kagera River population conformed to the ‘norm’ in African labeines of the synchronisation of spawning with rainfall. Slight deviations from this pattern were, however, observed in the Sio River population where spawning occurred prior to the onset of rainfall.
- Full Text:
- Date Issued: 2010
- Authors: Booth, Anthony J , Hecht, Thomas
- Date: 2010
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123564 , vital:35455 , https://doi.org/10.2989/16085910409503813
- Description: The ovaries of Labeo victorianus are paired organs situated in the peritoneal cavity and suspended on either side of the midline by a mesovarium. A capsule, composed of dense, regularly-arranged collagen and elastic fibres mixed with a few smooth muscle cells, enclosed the ovaries and gave off connective tissue septa, forming the ovigerous lamellae, which contained germ and follicle cells. Eight discrete stages of recrudescence were identified: oogonia, chromatin nucleolar oocytes, perinucleolar oocytes, primary yolk vesicle oocytes, secondary yolk vesicle oocytes, tertiary yolk vesicle oocytes, post-ovulatory follicles and atretic oocytes. Ovulation seemed to be synchronised with the onset of rainfall, with some deviations in the Sio River population. Gonadosomatic index variation followed a bimodal pattern, with maxima between January–February and between September–October for both populations. The same pattern was exhibited for both rainfall and water levels at the two study sites. Successful ovulation was followed by the formation of post-ovulatory follicles and Type I atresia, while failed spawning was characterised by Type II atresia. Clearance of post-ovulatory follicles was by phagocytosis and formation of melanomacrophage centres. There were variations in post-ovulatory changes between the two populations. Reproductive patterns in the Kagera River population conformed to the ‘norm’ in African labeines of the synchronisation of spawning with rainfall. Slight deviations from this pattern were, however, observed in the Sio River population where spawning occurred prior to the onset of rainfall.
- Full Text:
- Date Issued: 2010
Academic literacy and the decontextualised learner
- Boughey, Chrissie, McKenna, Sioux
- Authors: Boughey, Chrissie , McKenna, Sioux
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64651 , vital:28585 , http://www.DOI:10.14426/cristal.v4i2.80
- Description: The literacy practices that are valued in the university emerge from specific disciplinary histories yet students are often expected to master these as if they were common sense and natural. This article argues that the autonomous model of literacy, which sees language use as the application of a set of neutral skills, continues to dominate in South African universities. This model denies the extent to which taking on disciplinary literacy practices can be difficult and have implications for identity. It also allows disciplinary norms to remain largely opaque and beyond critique. Furthermore, the autonomous model of literacy is often coupled with a discourse of the ‘decontextualised learner’ who is divorced from her social context, with higher education success seen to be resting largely upon attributes inherent in, or lacking from, the individual. Sadly, alternative critical social understandings have not been widely taken up despite their being well researched. Indeed, such understandings have often been misappropriated in ways that draw on critical social terminology to offer autonomous, decontextualised, remedial student interventions. We argue that these issues are implicated in students’ accusations that universities are alienating spaces.
- Full Text:
- Date Issued: 2016
- Authors: Boughey, Chrissie , McKenna, Sioux
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64651 , vital:28585 , http://www.DOI:10.14426/cristal.v4i2.80
- Description: The literacy practices that are valued in the university emerge from specific disciplinary histories yet students are often expected to master these as if they were common sense and natural. This article argues that the autonomous model of literacy, which sees language use as the application of a set of neutral skills, continues to dominate in South African universities. This model denies the extent to which taking on disciplinary literacy practices can be difficult and have implications for identity. It also allows disciplinary norms to remain largely opaque and beyond critique. Furthermore, the autonomous model of literacy is often coupled with a discourse of the ‘decontextualised learner’ who is divorced from her social context, with higher education success seen to be resting largely upon attributes inherent in, or lacking from, the individual. Sadly, alternative critical social understandings have not been widely taken up despite their being well researched. Indeed, such understandings have often been misappropriated in ways that draw on critical social terminology to offer autonomous, decontextualised, remedial student interventions. We argue that these issues are implicated in students’ accusations that universities are alienating spaces.
- Full Text:
- Date Issued: 2016
An analysis of the influence of question design on learners' approaches to number pattern generalisation tasks:
- Samson, Duncan, Schäfer, Marc
- Authors: Samson, Duncan , Schäfer, Marc
- Date: 2007
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141026 , vital:37938 , https://0-hdl.handle.net.wam.seals.ac.za/10520/EJC20890
- Description: This paper reports on a study of the extent to which question design affects the solution strategies adopted by children when solving linear number pattern generalisation tasks presented in pictorial and numeric contexts. The research tool comprised a series of 22 pencil-and-paper exercises based on linear generalisation tasks set in both numeric and two-dimensional pictorial contexts. The responses to these linear generalisation questions were classified by means of stage descriptors as well as stage modifiers. The method or strategy adopted was analysed and classified into one of seven categories. In addition, a meta-analysis focused on the formula derived for the nth term in conjunction with its justification. The results of this study strongly support the notion that question design can play a critical role in influencing learners' choice of strategy and level of attainment when solving pattern generalisation tasks. An understanding of the importance of appropriate question design has direct pedagogical application within the context of the mathematics classroom.
- Full Text:
- Date Issued: 2007
- Authors: Samson, Duncan , Schäfer, Marc
- Date: 2007
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141026 , vital:37938 , https://0-hdl.handle.net.wam.seals.ac.za/10520/EJC20890
- Description: This paper reports on a study of the extent to which question design affects the solution strategies adopted by children when solving linear number pattern generalisation tasks presented in pictorial and numeric contexts. The research tool comprised a series of 22 pencil-and-paper exercises based on linear generalisation tasks set in both numeric and two-dimensional pictorial contexts. The responses to these linear generalisation questions were classified by means of stage descriptors as well as stage modifiers. The method or strategy adopted was analysed and classified into one of seven categories. In addition, a meta-analysis focused on the formula derived for the nth term in conjunction with its justification. The results of this study strongly support the notion that question design can play a critical role in influencing learners' choice of strategy and level of attainment when solving pattern generalisation tasks. An understanding of the importance of appropriate question design has direct pedagogical application within the context of the mathematics classroom.
- Full Text:
- Date Issued: 2007
Antiviral drug discovery: preparing for the next pandemic
- Adamson, Catherine S, Chibale, Kelly, Goss, Rebecca J M, Jaspars, Marcel, Newman, David J, Dorrington, Rosemary A
- Authors: Adamson, Catherine S , Chibale, Kelly , Goss, Rebecca J M , Jaspars, Marcel , Newman, David J , Dorrington, Rosemary A
- Date: 2021
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/177499 , vital:42827 , DOI: 10.1039/d0cs01118e
- Description: Clinically approved antiviral drugs are currently available for only 10 of the more than 220 viruses known to infect humans. The SARS-CoV-2 outbreak has exposed the critical need for compounds that can be rapidly mobilised for the treatment of re-emerging or emerging viral diseases, while vaccine development is underway. We review the current status of antiviral therapies focusing on RNA viruses, highlighting strategies for antiviral drug discovery and discuss the challenges, solutions and options to accelerate drug discovery efforts.
- Full Text:
- Date Issued: 2021
- Authors: Adamson, Catherine S , Chibale, Kelly , Goss, Rebecca J M , Jaspars, Marcel , Newman, David J , Dorrington, Rosemary A
- Date: 2021
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/177499 , vital:42827 , DOI: 10.1039/d0cs01118e
- Description: Clinically approved antiviral drugs are currently available for only 10 of the more than 220 viruses known to infect humans. The SARS-CoV-2 outbreak has exposed the critical need for compounds that can be rapidly mobilised for the treatment of re-emerging or emerging viral diseases, while vaccine development is underway. We review the current status of antiviral therapies focusing on RNA viruses, highlighting strategies for antiviral drug discovery and discuss the challenges, solutions and options to accelerate drug discovery efforts.
- Full Text:
- Date Issued: 2021
Application of quality by design principles for optimizing process variables of Extrusion and Spheronization of a Captopril Pellet Formulation:
- Veerubhotla, Krishna, Walker, Roderick B
- Authors: Veerubhotla, Krishna , Walker, Roderick B
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/178312 , vital:40098 , DOI: 10.36468/pharmaceutical-sciences.624
- Description: Product development using quality by design is a proactive and risk-based approach that shifts the manufacturing process from empirical to science-based. Risk assessment was performed to identify and analyse risk areas for the manufacture of captopril pellets. Twelve experimental runs were performed using a Plackett-Burman screening design. Pareto plots revealed the effect of formulation and process variables on the responses monitored and facilitated the identification of the most critical parameters for optimization of the formulation. A response surface methodology approach in conjunction with a central composite design was used to optimize the Eudragit® RL 30D (15-30 ml), microcrystalline cellulose (20-40 % w/w), sodium starch glycolate (2-5 % w/w) and spheronizer speed (650-1050 rpm).
- Full Text:
- Date Issued: 2020
- Authors: Veerubhotla, Krishna , Walker, Roderick B
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/178312 , vital:40098 , DOI: 10.36468/pharmaceutical-sciences.624
- Description: Product development using quality by design is a proactive and risk-based approach that shifts the manufacturing process from empirical to science-based. Risk assessment was performed to identify and analyse risk areas for the manufacture of captopril pellets. Twelve experimental runs were performed using a Plackett-Burman screening design. Pareto plots revealed the effect of formulation and process variables on the responses monitored and facilitated the identification of the most critical parameters for optimization of the formulation. A response surface methodology approach in conjunction with a central composite design was used to optimize the Eudragit® RL 30D (15-30 ml), microcrystalline cellulose (20-40 % w/w), sodium starch glycolate (2-5 % w/w) and spheronizer speed (650-1050 rpm).
- Full Text:
- Date Issued: 2020
Aspects of the biology and life history of largespot pompano, Trachinotus botla, in South Africa
- Parker, Daniel, Booth, Anthony J
- Authors: Parker, Daniel , Booth, Anthony J
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123798 , vital:35499 , https://doi.10.1071/MF14029
- Description: Trachinotus botla is an important recreational surf zone-dependent fish species distributed in the Indo-west Pacific from South Africa to Australia. In South Africa it is restricted to the northern KwaZulu-Natal coast. Biological investigations revealed that it is a fast growing species that attains a maximum age of, 7 years. Males and females sexually matured in their third year. It has a protracted summer spawning season with evidence of serial spawning behaviour. T. botla is an opportunistic predator with a generalist diet, with fish feeding on a wide variety of prey items particularly those that are temporally ‘superabundant’. Small fish fed predominantly on copepods and terrestrial insects, whereas larger fish consumed bivalves and crabs. Teleosts, primarily engraulids, were important components to the diet of fish of all sizes. An ontogenetic dietary shift was observed just after sexual maturity (300-mm fork length) that is possibly linked to a change in habitat preference with larger fish foraging on deeper reefs.
- Full Text:
- Date Issued: 2015
- Authors: Parker, Daniel , Booth, Anthony J
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123798 , vital:35499 , https://doi.10.1071/MF14029
- Description: Trachinotus botla is an important recreational surf zone-dependent fish species distributed in the Indo-west Pacific from South Africa to Australia. In South Africa it is restricted to the northern KwaZulu-Natal coast. Biological investigations revealed that it is a fast growing species that attains a maximum age of, 7 years. Males and females sexually matured in their third year. It has a protracted summer spawning season with evidence of serial spawning behaviour. T. botla is an opportunistic predator with a generalist diet, with fish feeding on a wide variety of prey items particularly those that are temporally ‘superabundant’. Small fish fed predominantly on copepods and terrestrial insects, whereas larger fish consumed bivalves and crabs. Teleosts, primarily engraulids, were important components to the diet of fish of all sizes. An ontogenetic dietary shift was observed just after sexual maturity (300-mm fork length) that is possibly linked to a change in habitat preference with larger fish foraging on deeper reefs.
- Full Text:
- Date Issued: 2015
Biogeographical comparison of the emergent macrophyte, Sagittaria platyphylla in its native and introduced ranges
- Kwong, Raelene M, Sagliocco, Jean Louis, Harms, Nathan E, Butler, Kym L, Green, Peter T, Martin, Grant D
- Authors: Kwong, Raelene M , Sagliocco, Jean Louis , Harms, Nathan E , Butler, Kym L , Green, Peter T , Martin, Grant D
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76980 , vital:30652 , https://doi.org/10.1016/j.aquabot.2017.05.001
- Description: Understanding why some plant species become invasive is important to predict and prevent future weed threats and identify appropriate management strategies. Many hypotheses have been proposed to explain why plants become invasive, yet few studies have quantitatively compared plant and population parameters between native and introduced range populations to gain an objective perspective on the causes of plant invasion. The present study uses a biogeographical field survey to compare morphological and reproductive traits and abundance between the native range (USA) and two introduced ranges (Australia and South Africa) of Sagittaria platyphylla (Engelm.) J.G. Sm (Alismataceae), a highly invasive freshwater macrophyte. Introduced and native populations differed in sexual reproductive output with the number of achenes per fruiting head and individual achene weight found to be 40% and 50% greater in introduced populations respectively. However, no other morphological traits were found to be consistently different between the native and both introduced ranges, especially after taking into account differences in environmental conditions between the three ranges. Although populations in introduced regions were larger and occupied greater percentage cover, no differences in plant density were evident. Our results suggest that, apart from sexual reproduction, many of the trait patterns observed in S. platyphylla are influenced by environmental and habitat conditions within the native and invaded ranges. We conclude that the enemy release hypothesis best explains the results observed for sexual reproduction. In particular, we hypothesise that a release from natural enemies, specifically a pre-dispersal seed predator, may induce reproductive plasticity in S. platyphylla.
- Full Text:
- Date Issued: 2017
- Authors: Kwong, Raelene M , Sagliocco, Jean Louis , Harms, Nathan E , Butler, Kym L , Green, Peter T , Martin, Grant D
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76980 , vital:30652 , https://doi.org/10.1016/j.aquabot.2017.05.001
- Description: Understanding why some plant species become invasive is important to predict and prevent future weed threats and identify appropriate management strategies. Many hypotheses have been proposed to explain why plants become invasive, yet few studies have quantitatively compared plant and population parameters between native and introduced range populations to gain an objective perspective on the causes of plant invasion. The present study uses a biogeographical field survey to compare morphological and reproductive traits and abundance between the native range (USA) and two introduced ranges (Australia and South Africa) of Sagittaria platyphylla (Engelm.) J.G. Sm (Alismataceae), a highly invasive freshwater macrophyte. Introduced and native populations differed in sexual reproductive output with the number of achenes per fruiting head and individual achene weight found to be 40% and 50% greater in introduced populations respectively. However, no other morphological traits were found to be consistently different between the native and both introduced ranges, especially after taking into account differences in environmental conditions between the three ranges. Although populations in introduced regions were larger and occupied greater percentage cover, no differences in plant density were evident. Our results suggest that, apart from sexual reproduction, many of the trait patterns observed in S. platyphylla are influenced by environmental and habitat conditions within the native and invaded ranges. We conclude that the enemy release hypothesis best explains the results observed for sexual reproduction. In particular, we hypothesise that a release from natural enemies, specifically a pre-dispersal seed predator, may induce reproductive plasticity in S. platyphylla.
- Full Text:
- Date Issued: 2017
Bloodmeal analysis in Culicoides midges collected near horses, donkeys and zebras in the Eastern Cape, South Africa:
- Riddin, M A, Venter, G J, Labuschagne, K, Villet, Martin H
- Authors: Riddin, M A , Venter, G J , Labuschagne, K , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140692 , vital:37910 , DOI: 10.1111/mve.12381
- Description: An upsurge in African horse sickness (AHS) in the Eastern Cape, South Africa, from 2006 led to an epidemiological reassessment of the disease there. Light trapping surveys carried out near horses, donkeys and zebras in 2014–2016 collected 39 species of Culicoides midge (Diptera: Ceratopogonidae) that are potential vectors of AHS. To establish if these midges fed on equids, DNA sequences were obtained from the gut contents of 52 female midges (35 freshly blood-fed, 13 gravid and four parous), representing 11 species collected across 11 sites. Culicoides leucostictus fed on all three equids. Culicoides bolitinos, Culicoides imicola and Culicoides magnus fed on both horses and donkeys. Culicoides onderstepoortensis fed on donkeys, and Culicoides similis and Culicoides pycnostictus fed on zebras. Bloodmeals from cows, pigs, warthogs, impalas and a domestic dog were also identified in various species, but none of the midges tested had fed on birds. These results contribute to knowledge of the vectorial capacity of several species of Culicoides with regard to AHS in the Eastern Cape and point to potential reservoir hosts, of which donkeys, zebras and domestic dogs have previously been found to harbour AHS. Blood-fed midges were also obtained throughout winter, indicating the potential for endemic AHS in the province.
- Full Text:
- Date Issued: 2019
- Authors: Riddin, M A , Venter, G J , Labuschagne, K , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140692 , vital:37910 , DOI: 10.1111/mve.12381
- Description: An upsurge in African horse sickness (AHS) in the Eastern Cape, South Africa, from 2006 led to an epidemiological reassessment of the disease there. Light trapping surveys carried out near horses, donkeys and zebras in 2014–2016 collected 39 species of Culicoides midge (Diptera: Ceratopogonidae) that are potential vectors of AHS. To establish if these midges fed on equids, DNA sequences were obtained from the gut contents of 52 female midges (35 freshly blood-fed, 13 gravid and four parous), representing 11 species collected across 11 sites. Culicoides leucostictus fed on all three equids. Culicoides bolitinos, Culicoides imicola and Culicoides magnus fed on both horses and donkeys. Culicoides onderstepoortensis fed on donkeys, and Culicoides similis and Culicoides pycnostictus fed on zebras. Bloodmeals from cows, pigs, warthogs, impalas and a domestic dog were also identified in various species, but none of the midges tested had fed on birds. These results contribute to knowledge of the vectorial capacity of several species of Culicoides with regard to AHS in the Eastern Cape and point to potential reservoir hosts, of which donkeys, zebras and domestic dogs have previously been found to harbour AHS. Blood-fed midges were also obtained throughout winter, indicating the potential for endemic AHS in the province.
- Full Text:
- Date Issued: 2019
Climate modelling suggests a review of the legal status of Brazilian pepper Schinus terebinthifolia in South Africa is required:
- Martin, Grant D, Magengelele, Nwabisa L, Paterson, Iain D, Sutton, Guy F
- Authors: Martin, Grant D , Magengelele, Nwabisa L , Paterson, Iain D , Sutton, Guy F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148606 , vital:38754 , https://doi.org/10.1016/j.sajb.2020.04.019
- Description: Brazilian pepper (Schinus terebinthifolia) is a tree native to subtropical South America that was introduced into South Africa in the early 1900s as an ornamental plant. The tree has since escaped cultivation and has invaded ruderal and pristine habitats along the eastern coast of South Africa. Brazilian Pepper is also one of the most problematic invasive alien plants in Florida, USA. We modelled the climatically suitable area for this species in South Africa using MaxEnt, with five distinct datasets: incorporating both the native and the invaded range of the species, as well as different backgrounds.
- Full Text:
- Date Issued: 2020
- Authors: Martin, Grant D , Magengelele, Nwabisa L , Paterson, Iain D , Sutton, Guy F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148606 , vital:38754 , https://doi.org/10.1016/j.sajb.2020.04.019
- Description: Brazilian pepper (Schinus terebinthifolia) is a tree native to subtropical South America that was introduced into South Africa in the early 1900s as an ornamental plant. The tree has since escaped cultivation and has invaded ruderal and pristine habitats along the eastern coast of South Africa. Brazilian Pepper is also one of the most problematic invasive alien plants in Florida, USA. We modelled the climatically suitable area for this species in South Africa using MaxEnt, with five distinct datasets: incorporating both the native and the invaded range of the species, as well as different backgrounds.
- Full Text:
- Date Issued: 2020
Contributions of the pars lateralis, pars basilaris and femur to age estimations of the immature skeleton within a South African forensic setting:
- Thornton, Roxanne, Edkins, Adrienne L, Hutchinson, E F
- Authors: Thornton, Roxanne , Edkins, Adrienne L , Hutchinson, E F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165451 , vital:41245 , https://0-doi.org.wam.seals.ac.za/10.1007/s00414-019-02143-9
- Description: Dental development and eruption sequences have prevailed as the gold standard in age estimations of previously unidentified immature individuals within a legal context. However, in the absence of the dentition, skeletal assessments have served as a frequently applied alternative. While various cranial and postcranial skeletal elements have been used in estimating age of the immature skeleton, little is known about the anthropometric value of the pars basilaris, pars lateralis and femur as skeletal age estimation tools. Thus, this study aimed to assess if these bones of the immature human skeleton were useful elements in estimating the age of prenatal and postnatal individuals. These bones were excised from the remains of 74 unclaimed human immature individuals and evaluated using traditional anthropometric methods. The study sample was sourced from the Johannesburg Forensic Pathology Services (JFPS) and the Johannesburg Forensic Paediatric Collection (JFPC), University of the Witwatersrand and subdivided into an early prenatal (younger than 30 gestational weeks); late prenatal (30 to 40 gestational weeks) and postnatal (birth to 7.5 months) age ranges.
- Full Text:
- Date Issued: 2020
- Authors: Thornton, Roxanne , Edkins, Adrienne L , Hutchinson, E F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165451 , vital:41245 , https://0-doi.org.wam.seals.ac.za/10.1007/s00414-019-02143-9
- Description: Dental development and eruption sequences have prevailed as the gold standard in age estimations of previously unidentified immature individuals within a legal context. However, in the absence of the dentition, skeletal assessments have served as a frequently applied alternative. While various cranial and postcranial skeletal elements have been used in estimating age of the immature skeleton, little is known about the anthropometric value of the pars basilaris, pars lateralis and femur as skeletal age estimation tools. Thus, this study aimed to assess if these bones of the immature human skeleton were useful elements in estimating the age of prenatal and postnatal individuals. These bones were excised from the remains of 74 unclaimed human immature individuals and evaluated using traditional anthropometric methods. The study sample was sourced from the Johannesburg Forensic Pathology Services (JFPS) and the Johannesburg Forensic Paediatric Collection (JFPC), University of the Witwatersrand and subdivided into an early prenatal (younger than 30 gestational weeks); late prenatal (30 to 40 gestational weeks) and postnatal (birth to 7.5 months) age ranges.
- Full Text:
- Date Issued: 2020
Dataset of experimental and adaptive neuro-fuzzy inference system (ANFIS) model prediction of R600a/MWCNT nanolubricant in a vapour compression system
- Babarinde, T O, Akinlabi, S A, Madyira, D M, Ekundayo, F M, Adedeji, P A
- Authors: Babarinde, T O , Akinlabi, S A , Madyira, D M , Ekundayo, F M , Adedeji, P A
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/3248 , vital:43283 , https://www.sciencedirect.com/science/article/pii/S2352340920312105
- Description: This research paper assessed the performance of R600a with the base lubricant and Multi-walled Carbon Nanotube (MWCNT) nanolubricant at steady state. It describes the instruments required for measurement of the data parameter and its uncertainties, steps involved in preparing and replacing the MWCNT nanolubricant concentration with base lubricant in vapour compression refrigeration. The system’s temperature data was collected at the components inlets and outlets. Pressure data was also registered at the compressor outlet and inlet. The data was captured at 27 °C ambient temperature at an interval of 30 min for 300 min. The experiment includes the experimental data collection, Adaptive Neuro-Fuzzy Inference System (ANFIS) training and testing dataset. The use of ANFIS model is explained in predicting the efficiency of MWCNT nanolubricant in a vapour compression refrigerator system. The ANFIS model also provides statistical output measures such as Root Mean Square Error (RMSE) and Mean Absolute Deviation (MAD), Mean Absolute Percentage Error (MAPE), and determination coefficient (R2). The data is useful and important for replacing MWCNT nanolubricant with base lubricant in a vapour compression refrigeration system for researchers in the specialisation of energy-efficient materials in refrigeration. The data present can be reused for vapour compression refrigeration systems simulation and modelling.
- Full Text:
- Date Issued: 2020
- Authors: Babarinde, T O , Akinlabi, S A , Madyira, D M , Ekundayo, F M , Adedeji, P A
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/3248 , vital:43283 , https://www.sciencedirect.com/science/article/pii/S2352340920312105
- Description: This research paper assessed the performance of R600a with the base lubricant and Multi-walled Carbon Nanotube (MWCNT) nanolubricant at steady state. It describes the instruments required for measurement of the data parameter and its uncertainties, steps involved in preparing and replacing the MWCNT nanolubricant concentration with base lubricant in vapour compression refrigeration. The system’s temperature data was collected at the components inlets and outlets. Pressure data was also registered at the compressor outlet and inlet. The data was captured at 27 °C ambient temperature at an interval of 30 min for 300 min. The experiment includes the experimental data collection, Adaptive Neuro-Fuzzy Inference System (ANFIS) training and testing dataset. The use of ANFIS model is explained in predicting the efficiency of MWCNT nanolubricant in a vapour compression refrigerator system. The ANFIS model also provides statistical output measures such as Root Mean Square Error (RMSE) and Mean Absolute Deviation (MAD), Mean Absolute Percentage Error (MAPE), and determination coefficient (R2). The data is useful and important for replacing MWCNT nanolubricant with base lubricant in a vapour compression refrigeration system for researchers in the specialisation of energy-efficient materials in refrigeration. The data present can be reused for vapour compression refrigeration systems simulation and modelling.
- Full Text:
- Date Issued: 2020
Dependence on environmental resources and implications for household welfare: evidence from the Kalahari drylands, South Africa
- Thondhlana, Gladman, Muchapondwa, Edwin
- Authors: Thondhlana, Gladman , Muchapondwa, Edwin
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67810 , vital:29149 , https://doi.org/10.1016/j.ecolecon.2014.10.003
- Description: Publisher version , This paper examines dependence on environmental resources and impacts on household welfare among the indigenous San and Mier rural communities neighbouring Kgalagadi Transfrontier Park in South Africa. Data on the various household income types, including environmental income, were collected through a structured survey of 200 households. Environmental income constituted 20% of the total income. The poorest income quintile showed the highest relative dependence on environmental income (31%), though absolute environmental income increased with total income. Poverty analyses showed that poverty incidence and poverty gap would increase by 13 and 7 percentage points respectively without environmental income. Gini-coefficient analyses revealed that income inequality would increase by 6 percentage points for all households if environmental income was excluded. The results generally suggest that environmental income is important for both the poor and the well-off, and wealth accumulation might be tied to resource use. There is a case for promoting sound environmental management, and sustainable and fair resource use in the Kalahari drylands in order to help pull more households out of poverty. Our findings also point to issues of heterogeneity in resource access even among indigenous communities previously thought to be homogenous. These should be key considerations for conservation interventions.
- Full Text: false
- Date Issued: 2014
- Authors: Thondhlana, Gladman , Muchapondwa, Edwin
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67810 , vital:29149 , https://doi.org/10.1016/j.ecolecon.2014.10.003
- Description: Publisher version , This paper examines dependence on environmental resources and impacts on household welfare among the indigenous San and Mier rural communities neighbouring Kgalagadi Transfrontier Park in South Africa. Data on the various household income types, including environmental income, were collected through a structured survey of 200 households. Environmental income constituted 20% of the total income. The poorest income quintile showed the highest relative dependence on environmental income (31%), though absolute environmental income increased with total income. Poverty analyses showed that poverty incidence and poverty gap would increase by 13 and 7 percentage points respectively without environmental income. Gini-coefficient analyses revealed that income inequality would increase by 6 percentage points for all households if environmental income was excluded. The results generally suggest that environmental income is important for both the poor and the well-off, and wealth accumulation might be tied to resource use. There is a case for promoting sound environmental management, and sustainable and fair resource use in the Kalahari drylands in order to help pull more households out of poverty. Our findings also point to issues of heterogeneity in resource access even among indigenous communities previously thought to be homogenous. These should be key considerations for conservation interventions.
- Full Text: false
- Date Issued: 2014
Designing writing groups to support postgraduate students’ academic writing: a case study from a South African university
- Authors: Wilmot, Kirstin
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66267 , vital:28926 , https://doi.org/10.1080/14703297.2016.1238775
- Description: publisher version , This paper reports on a writing group pilot programme implemented at a South African university. Drawing on literature, anonymous student evaluations and facilitator observations, it discusses the use of writing groups for supporting postgraduate academic writing practices. Developed within a broader postgraduate academic writing support programme, the paper discusses a case study of two pilot writing groups: a multidisciplinary long-term group and a disciplinary short-term ‘writing-intensive’ group. The findings indicate that the overall experience of the writing group was a positive one, with each group presenting varied ‘success’ aspects as well as challenges. Insights gleaned may contribute to our understanding of how these groups can be utilised to support postgraduate students and how different kinds of groups can be developed to serve particular student needs. The paper concludes with a discussion of the inclusion of a disciplinary expert, which proved particularly useful in this pilot.
- Full Text: false
- Date Issued: 2018
- Authors: Wilmot, Kirstin
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66267 , vital:28926 , https://doi.org/10.1080/14703297.2016.1238775
- Description: publisher version , This paper reports on a writing group pilot programme implemented at a South African university. Drawing on literature, anonymous student evaluations and facilitator observations, it discusses the use of writing groups for supporting postgraduate academic writing practices. Developed within a broader postgraduate academic writing support programme, the paper discusses a case study of two pilot writing groups: a multidisciplinary long-term group and a disciplinary short-term ‘writing-intensive’ group. The findings indicate that the overall experience of the writing group was a positive one, with each group presenting varied ‘success’ aspects as well as challenges. Insights gleaned may contribute to our understanding of how these groups can be utilised to support postgraduate students and how different kinds of groups can be developed to serve particular student needs. The paper concludes with a discussion of the inclusion of a disciplinary expert, which proved particularly useful in this pilot.
- Full Text: false
- Date Issued: 2018
Development of manganese phthalocyanine decorated with silver nanoparticles nanocomposite for improved electrocatalytic oxidation of hydrazine:
- Mpeta, Lekhetho S, Sen, Pinar, Nyokong, Tebello
- Authors: Mpeta, Lekhetho S , Sen, Pinar , Nyokong, Tebello
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148472 , vital:38742 , https://doi.org/10.1016/j.jelechem.2020.114173
- Description: In this study we report on the synthesis of tetrakis [4-(4-(5-chloro-1H-benzo [d]imidazol-2-yl) phenoxy phthalocyaninato] manganese (III) chloride (MnPc). The MnPc was first used to modify a glassy carbon electrode, followed by the growth of silver nanoparticles (AgNPs) onto the MnPc modified electrode to form MnPc-AgNPs modified electrode. The modified electrode was characterized using cydic voltammetry, chronoamperometry, scanning electrochemical microscopy and electrochemical impedance spectroscopy. The modified MnPc-AgNPs electrode was employed for the detection of hydrazine. The MnPc-AgNPs gave better current responses for electrooxidation of hydrazine relative to MnPc and AgNPs, individually. The catalytic rate constant was 1.90 x 10(5 )M(-1) S-1, with the detection limit (LoD) of 2.42 pM (using 3 sigma notation), and sensitivity of 61.56 mu A mM(-1), for MnPc-AgNPs. (C) 2020 Elsevier B.V. All rights reserved.
- Full Text:
- Date Issued: 2020
- Authors: Mpeta, Lekhetho S , Sen, Pinar , Nyokong, Tebello
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148472 , vital:38742 , https://doi.org/10.1016/j.jelechem.2020.114173
- Description: In this study we report on the synthesis of tetrakis [4-(4-(5-chloro-1H-benzo [d]imidazol-2-yl) phenoxy phthalocyaninato] manganese (III) chloride (MnPc). The MnPc was first used to modify a glassy carbon electrode, followed by the growth of silver nanoparticles (AgNPs) onto the MnPc modified electrode to form MnPc-AgNPs modified electrode. The modified electrode was characterized using cydic voltammetry, chronoamperometry, scanning electrochemical microscopy and electrochemical impedance spectroscopy. The modified MnPc-AgNPs electrode was employed for the detection of hydrazine. The MnPc-AgNPs gave better current responses for electrooxidation of hydrazine relative to MnPc and AgNPs, individually. The catalytic rate constant was 1.90 x 10(5 )M(-1) S-1, with the detection limit (LoD) of 2.42 pM (using 3 sigma notation), and sensitivity of 61.56 mu A mM(-1), for MnPc-AgNPs. (C) 2020 Elsevier B.V. All rights reserved.
- Full Text:
- Date Issued: 2020
Diatom-based water quality monitoring in southern Africa: challenges and future prospects
- Dalu, Tatenda, Froneman, P William
- Authors: Dalu, Tatenda , Froneman, P William
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124297 , vital:35590 , http://dx.doi.org/10.4314/wsa.v42i4.05
- Description: Diatoms are of significant ecological importance in aquatic ecosystems, which stems from their dynamic position at the base of the trophic web as primary producers. Because diatom communities have specific environmental requirements and respond rapidly to changes in environmental conditions they are often employed as a cost-effective method to assess anthropogenic impacts and health statuses of aquatic ecosystems, particularly in Europe and North America. The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past research pertaining to African diatom taxonomy should be made readily accessible to all through electronic media for use as a reference point. Moreover, following the same approach as for macroinvertebrate biomonitoring, African and other developing countries can resort to intermediate diatom taxonomy (i.e. genus), which is easier, less time-consuming and requires less-skilled personnel. While the lack of capacity and baseline information on diatom community composition and ecological requirements represent significant hurdles, diatom biomonitoring potentially holds much promise for understanding the ecological functioning and management of aquatic ecosystems in southern Africa. The application of diatom-based water quality assessment protocols has direct and immediate value for use as an ‘added-value’ assessment tool in addition to the use of macroinvertebrates and fish indices as these can indicate anthropogenically impacted and pristine sites.
- Full Text:
- Date Issued: 2016
- Authors: Dalu, Tatenda , Froneman, P William
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124297 , vital:35590 , http://dx.doi.org/10.4314/wsa.v42i4.05
- Description: Diatoms are of significant ecological importance in aquatic ecosystems, which stems from their dynamic position at the base of the trophic web as primary producers. Because diatom communities have specific environmental requirements and respond rapidly to changes in environmental conditions they are often employed as a cost-effective method to assess anthropogenic impacts and health statuses of aquatic ecosystems, particularly in Europe and North America. The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past research pertaining to African diatom taxonomy should be made readily accessible to all through electronic media for use as a reference point. Moreover, following the same approach as for macroinvertebrate biomonitoring, African and other developing countries can resort to intermediate diatom taxonomy (i.e. genus), which is easier, less time-consuming and requires less-skilled personnel. While the lack of capacity and baseline information on diatom community composition and ecological requirements represent significant hurdles, diatom biomonitoring potentially holds much promise for understanding the ecological functioning and management of aquatic ecosystems in southern Africa. The application of diatom-based water quality assessment protocols has direct and immediate value for use as an ‘added-value’ assessment tool in addition to the use of macroinvertebrates and fish indices as these can indicate anthropogenically impacted and pristine sites.
- Full Text:
- Date Issued: 2016
Do indigenous street trees promote more biodiversity than alien ones? evidence using mistletoes and birds in South Africa
- Authors: Shackleton, Charlie M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64663 , vital:28587 , http://www.doi:10.3390/f7070134
- Description: Trees in urban landscapes provide a range of ecosystem services, including habitat, refugia,food, and corridors for other fauna and flora. However, there is some debate whether the richness and abundance of other biodiversity supported is influenced by the provenance of trees, i.e., native or non-native. This study assessed the presence of mistletoes and birds (and nests) in 1261 street trees. There were marked differences between native and non-native street trees, with the former having a significantly higher prevalence of birds (and nests) and supporting more species and in greater densities, whilst the latter supported a higher prevalence of mistletoes. Additionally, for birds, the proximity to green space, tree size and species were also important, whilst for mistletoes, the proximity to green space, slope aspect, and tree species were significant. Preference ratios indicated that some tree species had a higher than random occurrence of birds or mistletoes, whilst others had a low abundance. The indigenous tree species, Acacia karroo Hayne was the only reasonably abundant street tree species that was important for birds, nests, and mistletoes. At the street scale, there was a positive relationship between street tree species richness and bird species richness. These results emphasise the importance of selecting appropriate tree species if biodiversity conservation is a core outcome.
- Full Text:
- Date Issued: 2016
- Authors: Shackleton, Charlie M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/64663 , vital:28587 , http://www.doi:10.3390/f7070134
- Description: Trees in urban landscapes provide a range of ecosystem services, including habitat, refugia,food, and corridors for other fauna and flora. However, there is some debate whether the richness and abundance of other biodiversity supported is influenced by the provenance of trees, i.e., native or non-native. This study assessed the presence of mistletoes and birds (and nests) in 1261 street trees. There were marked differences between native and non-native street trees, with the former having a significantly higher prevalence of birds (and nests) and supporting more species and in greater densities, whilst the latter supported a higher prevalence of mistletoes. Additionally, for birds, the proximity to green space, tree size and species were also important, whilst for mistletoes, the proximity to green space, slope aspect, and tree species were significant. Preference ratios indicated that some tree species had a higher than random occurrence of birds or mistletoes, whilst others had a low abundance. The indigenous tree species, Acacia karroo Hayne was the only reasonably abundant street tree species that was important for birds, nests, and mistletoes. At the street scale, there was a positive relationship between street tree species richness and bird species richness. These results emphasise the importance of selecting appropriate tree species if biodiversity conservation is a core outcome.
- Full Text:
- Date Issued: 2016
Do indigenous street trees promote more biodiversity than alien ones? Evidence using mistletoes and birds in South Africa
- Authors: Shackleton, Charlie M
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/60942 , vital:27895 , doi:10.3390/f7070134
- Description: Trees in urban landscapes provide a range of ecosystem services, including habitat, refugia, food, and corridors for other fauna and flora. However, there is some debate whether the richness and abundance of other biodiversity supported is influenced by the provenance of trees, i.e., native or non-native. This study assessed the presence of mistletoes and birds (and nests) in 1261 street trees. There were marked differences between native and non-native street trees, with the former having a significantly higher prevalence of birds (and nests) and supporting more species and in greater densities, whilst the latter supported a higher prevalence of mistletoes. Additionally, for birds, the proximity to green space, tree size and species were also important, whilst for mistletoes, the proximity to green space, slope aspect, and tree species were significant. Preference ratios indicated that some tree species had a higher than random occurrence of birds or mistletoes, whilst others had a low abundance. The indigenous tree species, Acacia karroo Hayne was the only reasonably abundant street tree species that was important for birds, nests, and mistletoes. At the street scale, there was a positive relationship between street tree species richness and bird species richness. These results emphasise the importance of selecting appropriate tree species if biodiversity conservation is a core outcome.
- Full Text:
- Date Issued: 2016
- Authors: Shackleton, Charlie M
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/60942 , vital:27895 , doi:10.3390/f7070134
- Description: Trees in urban landscapes provide a range of ecosystem services, including habitat, refugia, food, and corridors for other fauna and flora. However, there is some debate whether the richness and abundance of other biodiversity supported is influenced by the provenance of trees, i.e., native or non-native. This study assessed the presence of mistletoes and birds (and nests) in 1261 street trees. There were marked differences between native and non-native street trees, with the former having a significantly higher prevalence of birds (and nests) and supporting more species and in greater densities, whilst the latter supported a higher prevalence of mistletoes. Additionally, for birds, the proximity to green space, tree size and species were also important, whilst for mistletoes, the proximity to green space, slope aspect, and tree species were significant. Preference ratios indicated that some tree species had a higher than random occurrence of birds or mistletoes, whilst others had a low abundance. The indigenous tree species, Acacia karroo Hayne was the only reasonably abundant street tree species that was important for birds, nests, and mistletoes. At the street scale, there was a positive relationship between street tree species richness and bird species richness. These results emphasise the importance of selecting appropriate tree species if biodiversity conservation is a core outcome.
- Full Text:
- Date Issued: 2016
Do spotted hyaenas outcompete the big cats in a small, enclosed system in South Africa?:
- Comley, J, Joubert, C J, Mgqatsa, Nokubonga, Parker, Daniel M
- Authors: Comley, J , Joubert, C J , Mgqatsa, Nokubonga , Parker, Daniel M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/150099 , vital:38940 , doi:10.1111/jzo.12772
- Description: Carnivores are adapted to kill, meaning sympatric carnivores can have particularly aggressive and harmful competitive interactions. The co‐existence of multiple carnivores in an ecosystem could be restricted by their similarity in ecological niches (e.g. dietary overlap); however, high prey abundances could facilitate their co‐existence. Although the development of small, enclosed reserves (over 400 km2) in South Africa has reduced human–carnivore conflict, these systems may increase the likelihood of carnivore intra‐guild competition due to the clumping of competing carnivores into these restricted spaces. Using carnivore scat and kill site analyses, we determined the dietary preferences and overlap of sympatric large carnivores in a small, enclosed reserve, Selati Game Reserve (Selati).
- Full Text:
- Date Issued: 2020
- Authors: Comley, J , Joubert, C J , Mgqatsa, Nokubonga , Parker, Daniel M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/150099 , vital:38940 , doi:10.1111/jzo.12772
- Description: Carnivores are adapted to kill, meaning sympatric carnivores can have particularly aggressive and harmful competitive interactions. The co‐existence of multiple carnivores in an ecosystem could be restricted by their similarity in ecological niches (e.g. dietary overlap); however, high prey abundances could facilitate their co‐existence. Although the development of small, enclosed reserves (over 400 km2) in South Africa has reduced human–carnivore conflict, these systems may increase the likelihood of carnivore intra‐guild competition due to the clumping of competing carnivores into these restricted spaces. Using carnivore scat and kill site analyses, we determined the dietary preferences and overlap of sympatric large carnivores in a small, enclosed reserve, Selati Game Reserve (Selati).
- Full Text:
- Date Issued: 2020
Docking of HIV protease to silver nanoparticles
- Whiteley, Chris G, Shing, C-Y, Kuo, C-C, Lee, Duu-Jong
- Authors: Whiteley, Chris G , Shing, C-Y , Kuo, C-C , Lee, Duu-Jong
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67105 , vital:29032 , https://doi.org/10.1016/j.jtice.2015.10.029
- Description: publisher version , This interaction of silver nanoparticles (AgNP) with human immune-deficiency virus aspartic protease (HIVPR) is examined by molecular dynamics simulation using the Colores (Situs) package and biophysical techniques using UV–vis spectroscopy, dynamic light scattering, transmission electron microscopy and circular dichroism. The ‘docking’ of AgNP with HIVPR creates a complex [AgNP–HIVPR] to initiate a hypochromic time-dependent red-shift for the surface plasmon resonance maximum. MD simulations reflect large perturbations to enzyme conformations by fluctuations of both rmsd and B-factors. Increase in changes to electrostatic potentials within the enzyme, especially, with chain B, suggest hydrophobic interactions for the binding of the AgNP. This is supported by changes to mainchain and sidechain dihedrals for many hydrophobic amino acid including Cys95, Trp6 and Trp42. Circular dichroism spectra reveal disappearance of α-helices and β-sheets and increase in random coil first from chain B then chain A. During initial stages of the interactive simulation the enzyme is conformational flexible to accommodate the AgNP, that docks with the enzyme under a cooperative mechanism, until a more stable structure is formed at convergence. There is a decrease in size of the HIVPR–AgNP complex measured by changes to the gyration radius supporting evidence that the AgNP associates, initially, with chain B.
- Full Text: false
- Date Issued: 2016
- Authors: Whiteley, Chris G , Shing, C-Y , Kuo, C-C , Lee, Duu-Jong
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67105 , vital:29032 , https://doi.org/10.1016/j.jtice.2015.10.029
- Description: publisher version , This interaction of silver nanoparticles (AgNP) with human immune-deficiency virus aspartic protease (HIVPR) is examined by molecular dynamics simulation using the Colores (Situs) package and biophysical techniques using UV–vis spectroscopy, dynamic light scattering, transmission electron microscopy and circular dichroism. The ‘docking’ of AgNP with HIVPR creates a complex [AgNP–HIVPR] to initiate a hypochromic time-dependent red-shift for the surface plasmon resonance maximum. MD simulations reflect large perturbations to enzyme conformations by fluctuations of both rmsd and B-factors. Increase in changes to electrostatic potentials within the enzyme, especially, with chain B, suggest hydrophobic interactions for the binding of the AgNP. This is supported by changes to mainchain and sidechain dihedrals for many hydrophobic amino acid including Cys95, Trp6 and Trp42. Circular dichroism spectra reveal disappearance of α-helices and β-sheets and increase in random coil first from chain B then chain A. During initial stages of the interactive simulation the enzyme is conformational flexible to accommodate the AgNP, that docks with the enzyme under a cooperative mechanism, until a more stable structure is formed at convergence. There is a decrease in size of the HIVPR–AgNP complex measured by changes to the gyration radius supporting evidence that the AgNP associates, initially, with chain B.
- Full Text: false
- Date Issued: 2016
Does reservoir trophic status influence the feeding and growth of the sharptooth catfish, Clarias gariepinus (Teleostei: Clariidae)?
- Potts, Warren M, Hecht, Thomas, Andrew, Timothy G
- Authors: Potts, Warren M , Hecht, Thomas , Andrew, Timothy G
- Date: 2010
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124309 , vital:35591 , https://doi.org/10.2989/A JAS.2008.33.2.6.503
- Description: The diet and growth of sharptooth catfish, Clarias gariepinus, in an oligotrophic system (Kat River Reservoir, Eastern Cape, South Africa) were compared to those in a eutrophic system (Laing Reservoir, Eastern Cape) to determine if the trophic status of a waterbody had an effect on the growth rate of the species. In order of importance, the diet of catfish in Kat River Reservoir consisted of fish, insects, zooplankton, plant material and other items, while the diet of catfish in Laing Reservoir consisted of fish, plant material, zooplankton, other vertebrates and insects. The diets of catfish in the two reservoirs had a similarity index of 68.1% and there was no significant difference in their nutritional value. Fish prey was the most important dietary component in both reservoirs. Temperature regime and zooplankton and zoobenthos density were similar in both systems. However, fish prey density was significantly higher in the eutrophic Laing Reservoir and catfish grew significantly faster in that system. The slower growth rate in Kat River Reservoir was attributed to the higher energy costs associated with the capture of fish prey, which was less abundant than in Laing Reservoir. Trophic status therefore had an indirect effect on catfish growth by influencing the availability of fish prey.
- Full Text:
- Date Issued: 2010
- Authors: Potts, Warren M , Hecht, Thomas , Andrew, Timothy G
- Date: 2010
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124309 , vital:35591 , https://doi.org/10.2989/A JAS.2008.33.2.6.503
- Description: The diet and growth of sharptooth catfish, Clarias gariepinus, in an oligotrophic system (Kat River Reservoir, Eastern Cape, South Africa) were compared to those in a eutrophic system (Laing Reservoir, Eastern Cape) to determine if the trophic status of a waterbody had an effect on the growth rate of the species. In order of importance, the diet of catfish in Kat River Reservoir consisted of fish, insects, zooplankton, plant material and other items, while the diet of catfish in Laing Reservoir consisted of fish, plant material, zooplankton, other vertebrates and insects. The diets of catfish in the two reservoirs had a similarity index of 68.1% and there was no significant difference in their nutritional value. Fish prey was the most important dietary component in both reservoirs. Temperature regime and zooplankton and zoobenthos density were similar in both systems. However, fish prey density was significantly higher in the eutrophic Laing Reservoir and catfish grew significantly faster in that system. The slower growth rate in Kat River Reservoir was attributed to the higher energy costs associated with the capture of fish prey, which was less abundant than in Laing Reservoir. Trophic status therefore had an indirect effect on catfish growth by influencing the availability of fish prey.
- Full Text:
- Date Issued: 2010