Assessing estuarine nursery habitats for Cape Stumpnose (Rhabdosargus holubi), (Pisces: Sparidae) in a warm-temperate estuary in the Eastern Cape, South Africa
- Authors: Leslie, Timothy David
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3178 , vital:20381
- Description: The nursery role hypothesis provides an approach for assessing the nursery function of habitat types within estuaries. This study attempted to assess the nursery value of the dominant estuarine habitats in the Bushmans Estuary for Rhabdosargus holubi (Steindachner 1881) by analysing habitat complexity, relative abundance and behaviour of R. holubi and using stomach contents analysis and dietary diatom composition as indicative of feeding habitat. Structural habitat complexity was assessed in Zostera capensis (Setchell) seagrass and Spartina maritima (Curtis Fernald) salt marsh by sampling above-ground stem density and length, and total cover per unit area (Ct/At). Dimensionless habitat complexity indices such as the interstitial spatial index (ISI) at three magnifications and fractal geometry at two magnifications were used to further analyse habitat complexity. Above-ground biomass (P<0.05) in each season and canopy height (P<0.001) were significantly higher in salt marsh than in seagrass whilst stem density was significantly higher in seagrass than in salt marsh in each season (P<0.001). Each dimensionless index indicated that complexity is notably higher in seagrass than in the salt marsh. Using dimensionless indices that analyse complexity at different spatial scales provided a better analysis of habitat complexity than canopy height and biomass as it allowed for direct comparisons between habitat types. Underwater video cameras were deployed in seagrass, salt marsh and sand flat habitats to assess the relative abundance and behaviour of R. holubi. The relative abundance of R. holubi was significantly higher in seagrass than salt marsh and sand flats, whilst the behaviour of R. holubi indicated a high degree of habitat use in structured habitats and a low degree of habitat use in unstructured sand flat habitats. This indicated that not only are juvenile R. holubi a vegetation-associated species, but also a species that prefers seagrass to salt marsh.
- Full Text:
- Date Issued: 2016
- Authors: Leslie, Timothy David
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3178 , vital:20381
- Description: The nursery role hypothesis provides an approach for assessing the nursery function of habitat types within estuaries. This study attempted to assess the nursery value of the dominant estuarine habitats in the Bushmans Estuary for Rhabdosargus holubi (Steindachner 1881) by analysing habitat complexity, relative abundance and behaviour of R. holubi and using stomach contents analysis and dietary diatom composition as indicative of feeding habitat. Structural habitat complexity was assessed in Zostera capensis (Setchell) seagrass and Spartina maritima (Curtis Fernald) salt marsh by sampling above-ground stem density and length, and total cover per unit area (Ct/At). Dimensionless habitat complexity indices such as the interstitial spatial index (ISI) at three magnifications and fractal geometry at two magnifications were used to further analyse habitat complexity. Above-ground biomass (P<0.05) in each season and canopy height (P<0.001) were significantly higher in salt marsh than in seagrass whilst stem density was significantly higher in seagrass than in salt marsh in each season (P<0.001). Each dimensionless index indicated that complexity is notably higher in seagrass than in the salt marsh. Using dimensionless indices that analyse complexity at different spatial scales provided a better analysis of habitat complexity than canopy height and biomass as it allowed for direct comparisons between habitat types. Underwater video cameras were deployed in seagrass, salt marsh and sand flat habitats to assess the relative abundance and behaviour of R. holubi. The relative abundance of R. holubi was significantly higher in seagrass than salt marsh and sand flats, whilst the behaviour of R. holubi indicated a high degree of habitat use in structured habitats and a low degree of habitat use in unstructured sand flat habitats. This indicated that not only are juvenile R. holubi a vegetation-associated species, but also a species that prefers seagrass to salt marsh.
- Full Text:
- Date Issued: 2016
Distribution, habitat associations and conservation of the Eastern Cape rocky Sandelia bainsii (Perciform: Anabantidae) in the Great Fish River system
- Authors: Sifundza, Delsy Sindy
- Date: 2020
- Subjects: Anabantidae -- South Africa -- Great Fish River , Perciformes -- South Africa -- Great Fish River , Labyrinth fishes -- South Africa -- Great Fish River , Fishes -- Effect of human beings on -- South Africa -- Great Fish River , Fish populations -- South Africa -- Great Fish River , Fish declines -- South Africa -- Great Fish River , Fish populations -- Monitoring -- South Africa -- Great Fish River , Anabantidae -- Evolution -- South Africa -- Great Fish River , Gene flow , Mitochondrial DNA , Microsatellites (Genetics) , Eastern Cape rocky Sandelia bainsii , Freshwater ecology -- South Africa -- Great Fish River
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/142692 , vital:38102
- Description: In South Africa, freshwater ecosystems are under pressure due to increasing anthropogenic factors degrading river systems. The Cape Fold, the lower Southern Temperate Highveld and the Amatolo – Winterberg Highlands freshwater ecoregions contain some of the heavily impacted river systems in the country. One such river system is the Great Fish River system, which has been affected by anthropogenic modification (hydrological modification, water pollution and invasion by non-native fish species). These modifications have raised conservation concerns on an imperilled anabantid fish, the Eastern Cape rocky Sandelia bainsii that is confined to the Kat and Koonap rivers, which are tributaries of the Great Fish River. Historically, the species was reportedly common and abundant, with a range spanning across seven river systems (Kowie, Great Fish, Keiskamma, Igoda, Gxulu, Buffalo and Nahoon rivers) in the Eastern Cape Province. However, surveys have indicated that the species has experienced decline in population size and distribution range, with localised extirpations being reported. This resulted in its listing on the IUCN Red List of threatened species as Endangered. The proposed shale gas exploration and potential infrastructure development in the Karoo basin, which encompasses the headwaters of the Kat River, represent a potential future threat to the remnant populations of this species. The aim of the present study was to review the past and present distribution range of S. bainsii, determine the habitat associations and assess the conservation of S. bainsii in the Great Fish River system. This information is essential for informing conservation and management decisions for this species in the Great Fish River system. This study undertook a comprehensive survey of the Kat and the Koonap rivers in 2017, and augmented this information with data from more recent surveys that were conducted from 2009 - 2014 to map the distributions freshwater fishes in the Great Fish River system. Data from these recent surveys (2009 – 2017) were compared with historical records (1961 – 2005) obtained from the South African Institute for Aquatic Biodiversity to evaluate changes in distribution patterns of S. bainsii. Historical records indicated that S. bainsii occurred at 11 localities in the Kat River and three localities in the Koonap River. Data from recent surveys indicated that the species has persisted at these historical localities, except one locality in the Koonap River where no individuals of S. bainsii were captured, despite the use of multiple sampling approaches and gears. Although the species still persists at two of the three historical localities in the Koonap River, the population sizes have considerably declined as the species was reportedly in high abundance at these localities in the 1980s. Factors threatening the continued existence of this species in the Koonap River likely include non-native species, extreme drought conditions and the associated excessive abstraction of water which has resulted in the drying of some of the refugia pools where the species was historically common and abundant. In contrast to the Koonap River, the 2017 survey indicated that in the Kat River, S. bainsii had a similar distribution range compared to historical records. The species occurred at 11 of the 41 localities that were sampled in the Kat River, and the sampled populations consisted of all size classes. Sandelia bainsii occurred with other native fish species in the system, including Labeo umbratus, Enteromius anoplus and Glossogobius callidus. A comparison of historical and recent data indicates that non-native fishes have likely not expanded their ranges in the Kat River. This is likely due to the presence of weirs and dams that have prevented upstream movement of non-native fish species L. aeneus, C. gariepinus and T. sparrmanii which are now abundant in the lower Kat and mainstem Great Fish River. Surveys from the present study indicated that although S. bainsii still persists within the Kat River, there are a number of factors that pose a considerable threat to the continued existence of this species in the Great Fish River system. Chapter 3 evaluated the habitat associations of S. bainsii based on 10 physical and chemical variables and distribution data collected from 30 localities in the Upper Kat River and seven of its tributaries. A non-metric multidimensional scaling model was used to assess the distribution patterns of S. bainsii in relation to environmental variables. Furthermore, a negative binomial generalised linear model (GLM) was used to assess the relationship between the abundance of S. bainsii and environmental variables. Results from the present study indicated that S. bainsii was a habitat generalist as the distribution of this species showed no specific association with any of the habitat variables that were considered in this study. The species occurred in a wide range of habitats, including rocky sections in the upper Kat River and its tributaries as well as the mainstem sections. The GLM however indicated that the abundance of S. bainsii was negatively associated with increasing conductivity. In addition, the Kat River contains multiple weirs of variable sizes. Future studies should therefore evaluate the effects of these weirs on population fragmentation, gene flow and long-term evolutionary potential of S. bainsii through the application of techniques such as mitochondrial DNA and microsatellites.
- Full Text:
- Date Issued: 2020
- Authors: Sifundza, Delsy Sindy
- Date: 2020
- Subjects: Anabantidae -- South Africa -- Great Fish River , Perciformes -- South Africa -- Great Fish River , Labyrinth fishes -- South Africa -- Great Fish River , Fishes -- Effect of human beings on -- South Africa -- Great Fish River , Fish populations -- South Africa -- Great Fish River , Fish declines -- South Africa -- Great Fish River , Fish populations -- Monitoring -- South Africa -- Great Fish River , Anabantidae -- Evolution -- South Africa -- Great Fish River , Gene flow , Mitochondrial DNA , Microsatellites (Genetics) , Eastern Cape rocky Sandelia bainsii , Freshwater ecology -- South Africa -- Great Fish River
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/142692 , vital:38102
- Description: In South Africa, freshwater ecosystems are under pressure due to increasing anthropogenic factors degrading river systems. The Cape Fold, the lower Southern Temperate Highveld and the Amatolo – Winterberg Highlands freshwater ecoregions contain some of the heavily impacted river systems in the country. One such river system is the Great Fish River system, which has been affected by anthropogenic modification (hydrological modification, water pollution and invasion by non-native fish species). These modifications have raised conservation concerns on an imperilled anabantid fish, the Eastern Cape rocky Sandelia bainsii that is confined to the Kat and Koonap rivers, which are tributaries of the Great Fish River. Historically, the species was reportedly common and abundant, with a range spanning across seven river systems (Kowie, Great Fish, Keiskamma, Igoda, Gxulu, Buffalo and Nahoon rivers) in the Eastern Cape Province. However, surveys have indicated that the species has experienced decline in population size and distribution range, with localised extirpations being reported. This resulted in its listing on the IUCN Red List of threatened species as Endangered. The proposed shale gas exploration and potential infrastructure development in the Karoo basin, which encompasses the headwaters of the Kat River, represent a potential future threat to the remnant populations of this species. The aim of the present study was to review the past and present distribution range of S. bainsii, determine the habitat associations and assess the conservation of S. bainsii in the Great Fish River system. This information is essential for informing conservation and management decisions for this species in the Great Fish River system. This study undertook a comprehensive survey of the Kat and the Koonap rivers in 2017, and augmented this information with data from more recent surveys that were conducted from 2009 - 2014 to map the distributions freshwater fishes in the Great Fish River system. Data from these recent surveys (2009 – 2017) were compared with historical records (1961 – 2005) obtained from the South African Institute for Aquatic Biodiversity to evaluate changes in distribution patterns of S. bainsii. Historical records indicated that S. bainsii occurred at 11 localities in the Kat River and three localities in the Koonap River. Data from recent surveys indicated that the species has persisted at these historical localities, except one locality in the Koonap River where no individuals of S. bainsii were captured, despite the use of multiple sampling approaches and gears. Although the species still persists at two of the three historical localities in the Koonap River, the population sizes have considerably declined as the species was reportedly in high abundance at these localities in the 1980s. Factors threatening the continued existence of this species in the Koonap River likely include non-native species, extreme drought conditions and the associated excessive abstraction of water which has resulted in the drying of some of the refugia pools where the species was historically common and abundant. In contrast to the Koonap River, the 2017 survey indicated that in the Kat River, S. bainsii had a similar distribution range compared to historical records. The species occurred at 11 of the 41 localities that were sampled in the Kat River, and the sampled populations consisted of all size classes. Sandelia bainsii occurred with other native fish species in the system, including Labeo umbratus, Enteromius anoplus and Glossogobius callidus. A comparison of historical and recent data indicates that non-native fishes have likely not expanded their ranges in the Kat River. This is likely due to the presence of weirs and dams that have prevented upstream movement of non-native fish species L. aeneus, C. gariepinus and T. sparrmanii which are now abundant in the lower Kat and mainstem Great Fish River. Surveys from the present study indicated that although S. bainsii still persists within the Kat River, there are a number of factors that pose a considerable threat to the continued existence of this species in the Great Fish River system. Chapter 3 evaluated the habitat associations of S. bainsii based on 10 physical and chemical variables and distribution data collected from 30 localities in the Upper Kat River and seven of its tributaries. A non-metric multidimensional scaling model was used to assess the distribution patterns of S. bainsii in relation to environmental variables. Furthermore, a negative binomial generalised linear model (GLM) was used to assess the relationship between the abundance of S. bainsii and environmental variables. Results from the present study indicated that S. bainsii was a habitat generalist as the distribution of this species showed no specific association with any of the habitat variables that were considered in this study. The species occurred in a wide range of habitats, including rocky sections in the upper Kat River and its tributaries as well as the mainstem sections. The GLM however indicated that the abundance of S. bainsii was negatively associated with increasing conductivity. In addition, the Kat River contains multiple weirs of variable sizes. Future studies should therefore evaluate the effects of these weirs on population fragmentation, gene flow and long-term evolutionary potential of S. bainsii through the application of techniques such as mitochondrial DNA and microsatellites.
- Full Text:
- Date Issued: 2020
Particle precipitation effects on the South African ionosphere
- Authors: Sibanda, Patrick
- Date: 2007
- Subjects: Ionosphere -- South Africa , Precipitation (Chemistry) -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5481 , http://hdl.handle.net/10962/d1005267 , Ionosphere -- South Africa , Precipitation (Chemistry) -- South Africa
- Description: Particle precipitation involves the injection of energetic particles into the ionosphere which could increase the ionisation and conductivity of the upper atmosphere. The goal of this study was to examine the ionospheric response and changes due to particle precipitation in the region over South Africa, using a combination of groundbased and satellite instruments. Particle precipitation events were identified from satellite particle flux measurements of the Defence Meteorological Satellite Program (DMSP). Comprehensive studies were done on the events of 5 April, 2000 and 7 October, 2000. Analysis of the data from the satellite instruments indicates that no particle precipitation was observed over the South African region during these events and that it is unlikely to occur during other such events. To validate the data, methods and tools used in this study, precipitation in the South Atlantic anomaly (SAA) region is used. Satellite ion density measurements revealed that strong density enhancements occurred over the SAA region at satellite altitudes during the precipitation events, but this did not occur in the South African region. The measurements also revealed how the ionisation enhancements in the SAA region correlated with geomagnetic and solar activities. Particle precipitation and convective electric fields are two major magnetospheric energy sources to the upper atmosphere in the auroral and the SAA regions. These increase dramatically during geomagnetic storms and can disturb thermospheric circulation in the atmosphere and alter the rates of production and recombination of the ionised species. Ionosonde observations at Grahamstown, South Africa (33.30S, 26.50E), provided the data to build a picture of the response of the ionosphere over the South African region to particle precipitation during the precipitation events. This analysis showed that, within the confines of the available data, no direct connections between particle precipitation events and disturbances in the ionosphere over this region were revealed.
- Full Text:
- Date Issued: 2007
- Authors: Sibanda, Patrick
- Date: 2007
- Subjects: Ionosphere -- South Africa , Precipitation (Chemistry) -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5481 , http://hdl.handle.net/10962/d1005267 , Ionosphere -- South Africa , Precipitation (Chemistry) -- South Africa
- Description: Particle precipitation involves the injection of energetic particles into the ionosphere which could increase the ionisation and conductivity of the upper atmosphere. The goal of this study was to examine the ionospheric response and changes due to particle precipitation in the region over South Africa, using a combination of groundbased and satellite instruments. Particle precipitation events were identified from satellite particle flux measurements of the Defence Meteorological Satellite Program (DMSP). Comprehensive studies were done on the events of 5 April, 2000 and 7 October, 2000. Analysis of the data from the satellite instruments indicates that no particle precipitation was observed over the South African region during these events and that it is unlikely to occur during other such events. To validate the data, methods and tools used in this study, precipitation in the South Atlantic anomaly (SAA) region is used. Satellite ion density measurements revealed that strong density enhancements occurred over the SAA region at satellite altitudes during the precipitation events, but this did not occur in the South African region. The measurements also revealed how the ionisation enhancements in the SAA region correlated with geomagnetic and solar activities. Particle precipitation and convective electric fields are two major magnetospheric energy sources to the upper atmosphere in the auroral and the SAA regions. These increase dramatically during geomagnetic storms and can disturb thermospheric circulation in the atmosphere and alter the rates of production and recombination of the ionised species. Ionosonde observations at Grahamstown, South Africa (33.30S, 26.50E), provided the data to build a picture of the response of the ionosphere over the South African region to particle precipitation during the precipitation events. This analysis showed that, within the confines of the available data, no direct connections between particle precipitation events and disturbances in the ionosphere over this region were revealed.
- Full Text:
- Date Issued: 2007
The effect of shade on the biological control of Salvinia molesta D.S. Mitchell [Salviniaceae] by the weevil, Cyrtobagous salviniae Calder and Sands [Curculionidae]
- Authors: Maseko, Zolile
- Date: 2017
- Subjects: Salvinia molesta , Aquatic weeds -- Biological control , Beetles , Insects as biological pest control agents
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4808 , vital:20726
- Description: Salvinia molesta, a floating aquatic weed, is a global menace in many water bodies and waterways. The weed disrupts the ecological balance wherever it invades and also has wide ranging economic and health impacts. Its impact has resulted in the need to control it, and while chemical and mechanical control are often ineffective, biological control by the weevil Cyrtobagous salviniae is largely successful. However, in many parts of the world, including South Africa, biological control of S. molesta has been less effective where the weed grows as an understory species. Shallow and shaded waters characteristically found at the margins of water bodies provide a refuge for S. molesta. Therefore, the aim of the study was to determine the effect of shade on the efficacy of biological control of S. molesta. Investigations into the problems associated with control in the shade were carried out in a greenhouse and in the field. In controlled greenhouse experiments, plants were grown at high and low nutrient levels in individual mesocosms, at three varying levels of shade, where half the mesocosms were inoculated with C. salviniae. Plants in high nutrient conditions were significantly more productive in terms of biomass accumulation, compared to those grown at low nutrient levels, in both the absence and presence of herbivory at all levels of shade tested. Plants grown in the shade and in high nutrient conditions had significantly higher quality compared to the ones exposed to full sun. Higher plant quality in the shade consequently resulted in accelerated fecundity for C. salviniae resulting in significantly higher weevil populations. Furthermore, less damage was recorded on plants in the shade, possibly due to the high nitrogen concentrations which may have deterred grazing by C. salviniae. However, in the absence of shading, plants were of lower quality and consequently sustained more damage from herbivores despite lower weevil populations. In contrast to the greenhouse, there were no differences in biomass recorded in the field at two nutrient levels and in the presence of herbivory for both shade and open sites. Nutrients added to high nutrient treatment quadrats diffused evenly across the water body resulting in uniform nutrient distribution, hence uniform plant biomass and carbon-nitrogen ratio. Despite the lack of statistical differences, more weevils were found in the full sun plots, while modest populations were recorded in the shade. Higher weevil populations consequently led to more damage in the sun, a situation that has been observed in most field sites in South Africa. The results therefore suggest that nutrients were pivotal in plant growth compared to light regimes (amount of PAR). Plant quality significantly influenced weevil populations and plant damage in both studies, demonstrating that plant nitrogen plays a crucial role in the plant- herbivore system. Furthermore, in both the greenhouse and field, despite lack of statistical differences, plants exposed to full sunlight suffered more damage than shade plants, pointing towards better control in the sun compared to the shade, suggesting that there is greater preference of sun-exposed plants for grazing by the weevils. The results from this study add to the growing body of literature that plant quality is a major factor in determining the success of aquatic weed biological control programmes.
- Full Text:
- Date Issued: 2017
- Authors: Maseko, Zolile
- Date: 2017
- Subjects: Salvinia molesta , Aquatic weeds -- Biological control , Beetles , Insects as biological pest control agents
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4808 , vital:20726
- Description: Salvinia molesta, a floating aquatic weed, is a global menace in many water bodies and waterways. The weed disrupts the ecological balance wherever it invades and also has wide ranging economic and health impacts. Its impact has resulted in the need to control it, and while chemical and mechanical control are often ineffective, biological control by the weevil Cyrtobagous salviniae is largely successful. However, in many parts of the world, including South Africa, biological control of S. molesta has been less effective where the weed grows as an understory species. Shallow and shaded waters characteristically found at the margins of water bodies provide a refuge for S. molesta. Therefore, the aim of the study was to determine the effect of shade on the efficacy of biological control of S. molesta. Investigations into the problems associated with control in the shade were carried out in a greenhouse and in the field. In controlled greenhouse experiments, plants were grown at high and low nutrient levels in individual mesocosms, at three varying levels of shade, where half the mesocosms were inoculated with C. salviniae. Plants in high nutrient conditions were significantly more productive in terms of biomass accumulation, compared to those grown at low nutrient levels, in both the absence and presence of herbivory at all levels of shade tested. Plants grown in the shade and in high nutrient conditions had significantly higher quality compared to the ones exposed to full sun. Higher plant quality in the shade consequently resulted in accelerated fecundity for C. salviniae resulting in significantly higher weevil populations. Furthermore, less damage was recorded on plants in the shade, possibly due to the high nitrogen concentrations which may have deterred grazing by C. salviniae. However, in the absence of shading, plants were of lower quality and consequently sustained more damage from herbivores despite lower weevil populations. In contrast to the greenhouse, there were no differences in biomass recorded in the field at two nutrient levels and in the presence of herbivory for both shade and open sites. Nutrients added to high nutrient treatment quadrats diffused evenly across the water body resulting in uniform nutrient distribution, hence uniform plant biomass and carbon-nitrogen ratio. Despite the lack of statistical differences, more weevils were found in the full sun plots, while modest populations were recorded in the shade. Higher weevil populations consequently led to more damage in the sun, a situation that has been observed in most field sites in South Africa. The results therefore suggest that nutrients were pivotal in plant growth compared to light regimes (amount of PAR). Plant quality significantly influenced weevil populations and plant damage in both studies, demonstrating that plant nitrogen plays a crucial role in the plant- herbivore system. Furthermore, in both the greenhouse and field, despite lack of statistical differences, plants exposed to full sunlight suffered more damage than shade plants, pointing towards better control in the sun compared to the shade, suggesting that there is greater preference of sun-exposed plants for grazing by the weevils. The results from this study add to the growing body of literature that plant quality is a major factor in determining the success of aquatic weed biological control programmes.
- Full Text:
- Date Issued: 2017
The influence of environmental variability on the catch of chokka, Loligo reynaudii, off the coast of South Africa
- Authors: Joyner, Jessica Mary
- Date: 2017
- Subjects: Loligo reynaudii , Loligo fisheries -- South Africa , Squid fisheries -- South Africa , Loligo fisheries -- Environmental aspects -- South Africa , Squid fisheries -- Environmental aspects - South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/32130 , vital:24013
- Description: Globally, cephalopod fisheries are being relied on more heavily due to the depletion of longer-lived teleost species. The South African chokka squid (Loligo reynaudii) fishery is a case in point. Although previously numerous squid were often caught as bycatch, the fishery has officially been in place since 1985. Since the inception of the chokka fishery in South Africa, several studies have investigated the relationship between environmental drivers and annual chokka squid catch, with varying degrees of success. Recently, in 2013, chokka squid catches hit a record low, prompting resurgence in the topic of the squid environment-catch relationship. This study was initiated in an attempt to provide a quantitative relationship between the chokka squid catch and environmental variability, and to build a predictive model that could be used in fisheries management strategies. Historical data were obtained from various sources and included the mean and standard deviation in ocean bottom temperature; the mean and standard deviation in sea surface temperature; the maximum and minimum as well as the variation in wind speed; the mean, predominant and standard deviation in wind direction; the mean and standard deviation in atmospheric pressure; the mean chlorophyll concentration; the number of upwelling events; the hours of easterly winds blowing per day; and two large variation-in-climate indices, namely, the oceanic Nino index and the Antarctic Oscillation index. The monthly catch data were also provided. These data were initially analysed for inter-annual and intra-annual cyclic trends and followed by analysis of the delay in response of catch to the environmental variables, anticipating some impact on the different stages of the chokka life cycle. These lagged data were incorporated into a negative binomial generalised linear model, as well as a generalised additive model, which revealed a strong relationship (r²=0.707) between the catch and environmental variability. The inclusion of all the parameters was necessary; however, the mean bottom temperature and the standard deviation in sea surface temperature were the only parameters that had a significant effect on the catch. These results were used to build a predictive model that indicated that, although the relationship was strong, the ability of the model to predict catch was weak, particularly from the year 2005 onwards.
- Full Text:
- Date Issued: 2017
- Authors: Joyner, Jessica Mary
- Date: 2017
- Subjects: Loligo reynaudii , Loligo fisheries -- South Africa , Squid fisheries -- South Africa , Loligo fisheries -- Environmental aspects -- South Africa , Squid fisheries -- Environmental aspects - South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/32130 , vital:24013
- Description: Globally, cephalopod fisheries are being relied on more heavily due to the depletion of longer-lived teleost species. The South African chokka squid (Loligo reynaudii) fishery is a case in point. Although previously numerous squid were often caught as bycatch, the fishery has officially been in place since 1985. Since the inception of the chokka fishery in South Africa, several studies have investigated the relationship between environmental drivers and annual chokka squid catch, with varying degrees of success. Recently, in 2013, chokka squid catches hit a record low, prompting resurgence in the topic of the squid environment-catch relationship. This study was initiated in an attempt to provide a quantitative relationship between the chokka squid catch and environmental variability, and to build a predictive model that could be used in fisheries management strategies. Historical data were obtained from various sources and included the mean and standard deviation in ocean bottom temperature; the mean and standard deviation in sea surface temperature; the maximum and minimum as well as the variation in wind speed; the mean, predominant and standard deviation in wind direction; the mean and standard deviation in atmospheric pressure; the mean chlorophyll concentration; the number of upwelling events; the hours of easterly winds blowing per day; and two large variation-in-climate indices, namely, the oceanic Nino index and the Antarctic Oscillation index. The monthly catch data were also provided. These data were initially analysed for inter-annual and intra-annual cyclic trends and followed by analysis of the delay in response of catch to the environmental variables, anticipating some impact on the different stages of the chokka life cycle. These lagged data were incorporated into a negative binomial generalised linear model, as well as a generalised additive model, which revealed a strong relationship (r²=0.707) between the catch and environmental variability. The inclusion of all the parameters was necessary; however, the mean bottom temperature and the standard deviation in sea surface temperature were the only parameters that had a significant effect on the catch. These results were used to build a predictive model that indicated that, although the relationship was strong, the ability of the model to predict catch was weak, particularly from the year 2005 onwards.
- Full Text:
- Date Issued: 2017
The population structure of two estuarine fish species, atherina breviceps (Pisces: Atherinidae) and gilchristella aestuaria (Pisces: Clupeidae), along the Southern African coastline
- Authors: Norton, Olivia Bridget
- Date: 2006
- Subjects: Estuarine fishes -- South Africa , Estuarine ecology -- South Africa , Clupeidae -- South Africa , Silversides -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5745 , http://hdl.handle.net/10962/d1005431 , Estuarine fishes -- South Africa , Estuarine ecology -- South Africa , Clupeidae -- South Africa , Silversides -- South Africa
- Description: Phylogeographic patterns of coastal organisms with different life histories and breeding strategies may reveal patterns not consistent with the current delineation of the biogeographic provinces around South Africa. The subdivision of the South African coastline into these three main climatological or biogeographic regions: namely the cool temperate west coast, the warm temperate south coast and the subtropical east coast, is based on average seawater temperatures and hydrological conditions. Genealogies of two estuarine fish species Atherina breviceps, a marine breeder, and Gilchristella aestuaria, an estuarine spawner, were reconstructed using mitochondrial DNA (mtDNA) control region sequences. The study comprised two components, an assessment of a small dataset of both fish species to compare their population structure along the South African coastline and a more comprehensive investigation of the phylogeography of G. aestuaria collected from 21 estuaries around the coast. The comparative study of A. breviceps and G. aestuaria indicate different population distribution patterns along the South African coastline. Results of the A. breviceps analysis demonstrate substantial gene flow due to the random mixing of alleles, while the comparative G. aestuaria dataset indicates a more structured population and considerably less gene flow. The G. aestuaria population demonstrates geographic separation into four groups, namely the west coast (Great Berg), Bot (south coast), Seekoei (south coast) and east coast (Bushmans, Kasouga and Cefane). Results from the larger G. aestuaria dataset indicate that the phylogeographic patterns observed during this study do not conform to existing biogeographic boundaries along the southern African coastline. The delineation identified during this study between the warm temperate and subtropical regions is further south than originally perceived and this southward extension can be ascribed to the prevailing hydrology. The life history patterns and ecology of these two estuarine fish species appears key to understanding their population structure. These factors interact with environmental characteristics such as physical oceanography and the distribution of estuaries (along the coastline) to explain the observed distribution patterns and population structure of A. breviceps and G. aestuaria.
- Full Text:
- Date Issued: 2006
- Authors: Norton, Olivia Bridget
- Date: 2006
- Subjects: Estuarine fishes -- South Africa , Estuarine ecology -- South Africa , Clupeidae -- South Africa , Silversides -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5745 , http://hdl.handle.net/10962/d1005431 , Estuarine fishes -- South Africa , Estuarine ecology -- South Africa , Clupeidae -- South Africa , Silversides -- South Africa
- Description: Phylogeographic patterns of coastal organisms with different life histories and breeding strategies may reveal patterns not consistent with the current delineation of the biogeographic provinces around South Africa. The subdivision of the South African coastline into these three main climatological or biogeographic regions: namely the cool temperate west coast, the warm temperate south coast and the subtropical east coast, is based on average seawater temperatures and hydrological conditions. Genealogies of two estuarine fish species Atherina breviceps, a marine breeder, and Gilchristella aestuaria, an estuarine spawner, were reconstructed using mitochondrial DNA (mtDNA) control region sequences. The study comprised two components, an assessment of a small dataset of both fish species to compare their population structure along the South African coastline and a more comprehensive investigation of the phylogeography of G. aestuaria collected from 21 estuaries around the coast. The comparative study of A. breviceps and G. aestuaria indicate different population distribution patterns along the South African coastline. Results of the A. breviceps analysis demonstrate substantial gene flow due to the random mixing of alleles, while the comparative G. aestuaria dataset indicates a more structured population and considerably less gene flow. The G. aestuaria population demonstrates geographic separation into four groups, namely the west coast (Great Berg), Bot (south coast), Seekoei (south coast) and east coast (Bushmans, Kasouga and Cefane). Results from the larger G. aestuaria dataset indicate that the phylogeographic patterns observed during this study do not conform to existing biogeographic boundaries along the southern African coastline. The delineation identified during this study between the warm temperate and subtropical regions is further south than originally perceived and this southward extension can be ascribed to the prevailing hydrology. The life history patterns and ecology of these two estuarine fish species appears key to understanding their population structure. These factors interact with environmental characteristics such as physical oceanography and the distribution of estuaries (along the coastline) to explain the observed distribution patterns and population structure of A. breviceps and G. aestuaria.
- Full Text:
- Date Issued: 2006
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