Checklist, endemism, English vernacular names and identification of the cicadas (Insecta, Hemiptera, Cicadidae) of KwaZulu-Natal, South Africa:
- Armstrong, Adrian J, Villet, Martin H
- Authors: Armstrong, Adrian J , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140586 , vital:37901 , DOI: 10.3897/afrinvertebr.60.35130
- Description: Public understanding of the goals of applied biology and conservation is promoted by showcasing charismatic or significant organisms using vernacular names. Conservation activities in the province of KwaZulu-Natal, South Africa, are prioritising taxa that have high rates of provincial endemism, such as snails, earthworms, millipedes and cicadas. To assist wider public engagement in these activities, an assessment of endemism of the cicadas of KwaZulu-Natal is presented along with a dichotomous, 37-couplet key for the identification of males, based mainly on externally visible morphology and colouration. Standardised English vernacular names coined following a simple naming convention are proposed. Forty-two percent (16 out of 38) of the cicada species known from KwaZulu-Natal are endemic to the province. Photographs of some of the species are included to facilitate their identification. Photographs can be used for identification of various species providing that the diagnostic characters are visible in the photographs. For this purpose, photographs may have to be taken of hand-held individuals. Some of the endemic species are of particular concern for conservation because they are not known to occur in statutory protected areas or are only known from relatively small protected areas. The latter may not be able to ensure the long-term survival of the species. The rate and extent of loss of habitat outside protected areas is likely to be a grave threat to species that are not protected or that are inadequately conserved in statutory protected areas. The standardised vernacular names proposed here provide a tool for communicating provincial conservation plans and concerns with stakeholders in KwaZulu-Natal and for stimulating interest in cicadas amongst land users, environmental impact assessment practitioners, biologists, naturalists and citizen scientists.
- Full Text:
- Date Issued: 2019
- Authors: Armstrong, Adrian J , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140586 , vital:37901 , DOI: 10.3897/afrinvertebr.60.35130
- Description: Public understanding of the goals of applied biology and conservation is promoted by showcasing charismatic or significant organisms using vernacular names. Conservation activities in the province of KwaZulu-Natal, South Africa, are prioritising taxa that have high rates of provincial endemism, such as snails, earthworms, millipedes and cicadas. To assist wider public engagement in these activities, an assessment of endemism of the cicadas of KwaZulu-Natal is presented along with a dichotomous, 37-couplet key for the identification of males, based mainly on externally visible morphology and colouration. Standardised English vernacular names coined following a simple naming convention are proposed. Forty-two percent (16 out of 38) of the cicada species known from KwaZulu-Natal are endemic to the province. Photographs of some of the species are included to facilitate their identification. Photographs can be used for identification of various species providing that the diagnostic characters are visible in the photographs. For this purpose, photographs may have to be taken of hand-held individuals. Some of the endemic species are of particular concern for conservation because they are not known to occur in statutory protected areas or are only known from relatively small protected areas. The latter may not be able to ensure the long-term survival of the species. The rate and extent of loss of habitat outside protected areas is likely to be a grave threat to species that are not protected or that are inadequately conserved in statutory protected areas. The standardised vernacular names proposed here provide a tool for communicating provincial conservation plans and concerns with stakeholders in KwaZulu-Natal and for stimulating interest in cicadas amongst land users, environmental impact assessment practitioners, biologists, naturalists and citizen scientists.
- Full Text:
- Date Issued: 2019
The uses of Chrysomya megacephala (Fabricius, 1794)(Diptera: Calliphoridae) in forensic entomology:
- Badenhorst, Rozane, Villet, Martin H
- Authors: Badenhorst, Rozane , Villet, Martin H
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140631 , vital:37905 , DOI: 10.1080/20961790.2018.1426136
- Description: Chrysomya megacephala (Fabricius, 1794) occurs on every continent and is closely associated with carrion and decaying material in human environments. Its abilities to find dead bodies and carry pathogens give it a prominence in human affairs that may involve prosecution or litigation, and therefore forensic entomologists. The identification, geographical distribution and biology of the species are reviewed to provide a background for approaches that four branches of forensic entomology (urban, stored-product, medico-criminal and environmental) might take to investigations involving this fly.
- Full Text:
- Date Issued: 2018
- Authors: Badenhorst, Rozane , Villet, Martin H
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140631 , vital:37905 , DOI: 10.1080/20961790.2018.1426136
- Description: Chrysomya megacephala (Fabricius, 1794) occurs on every continent and is closely associated with carrion and decaying material in human environments. Its abilities to find dead bodies and carry pathogens give it a prominence in human affairs that may involve prosecution or litigation, and therefore forensic entomologists. The identification, geographical distribution and biology of the species are reviewed to provide a background for approaches that four branches of forensic entomology (urban, stored-product, medico-criminal and environmental) might take to investigations involving this fly.
- Full Text:
- Date Issued: 2018
Rapid recovery of macroinvertebrates in a South African stream treated with rotenone:
- Bellingan, Terence A, Hugo, Sanet, Woodford, Darragh J, Gouws, Jeanne, Villet, Martin H, Weyl, Olaf L F
- Authors: Bellingan, Terence A , Hugo, Sanet , Woodford, Darragh J , Gouws, Jeanne , Villet, Martin H , Weyl, Olaf L F
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140751 , vital:37915 , DOI: 10.1007/s10750-019-3885-z
- Description: South Africa’s Cape Fold Ecoregion supports a unique freshwater fish assemblage with many endemics. To mitigate impacts of alien invasive fishes on this unique assemblage, nature conservation authority CapeNature used rotenone to remove smallmouth bass (Micropterus dolomieu) from the Rondegat River. We investigated whether the rotenone treatments had an adverse impact on the aquatic macroinvertebrate community over the long-term, the first study of its kind in Africa. We monitored macroinvertebrates within treated and untreated (control) sites on multiple sampling events for 2 years before and 2 years after two rotenone treatments. We analysed the difference in invertebrate abundance between treatment and control sites before and after treatment, using generalised linear mixed models with sampling event as a random factor to partition out natural fluctuations in abundances over time.
- Full Text:
- Date Issued: 2019
- Authors: Bellingan, Terence A , Hugo, Sanet , Woodford, Darragh J , Gouws, Jeanne , Villet, Martin H , Weyl, Olaf L F
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140751 , vital:37915 , DOI: 10.1007/s10750-019-3885-z
- Description: South Africa’s Cape Fold Ecoregion supports a unique freshwater fish assemblage with many endemics. To mitigate impacts of alien invasive fishes on this unique assemblage, nature conservation authority CapeNature used rotenone to remove smallmouth bass (Micropterus dolomieu) from the Rondegat River. We investigated whether the rotenone treatments had an adverse impact on the aquatic macroinvertebrate community over the long-term, the first study of its kind in Africa. We monitored macroinvertebrates within treated and untreated (control) sites on multiple sampling events for 2 years before and 2 years after two rotenone treatments. We analysed the difference in invertebrate abundance between treatment and control sites before and after treatment, using generalised linear mixed models with sampling event as a random factor to partition out natural fluctuations in abundances over time.
- Full Text:
- Date Issued: 2019
Deeper knowledge of shallow waters: reviewing the invertebrate fauna of southern African temporary wetlands
- Bird, Matthew S, Mlambo, Musa C, Wasserman, Ryan J, Dalu, Tatenda, Holland, Alexandra J, Day, Jenny A, Villet, Martin H, Bilton, David T, Barber-James, Helen M, Brendonck, Luc
- Authors: Bird, Matthew S , Mlambo, Musa C , Wasserman, Ryan J , Dalu, Tatenda , Holland, Alexandra J , Day, Jenny A , Villet, Martin H , Bilton, David T , Barber-James, Helen M , Brendonck, Luc
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140784 , vital:37918 , DOI: 10.1007/s10750-018-3772-z
- Description: Temporary lentic wetlands are becoming increasingly recognised for their collective role in contributing to biodiversity at the landscape scale. In southern Africa, a region with a high density of such wetlands, information characterising the fauna of these systems is disparate and often obscurely published. Here we provide a collation and synthesis of published research on the aquatic invertebrate fauna inhabiting temporary lentic wetlands of the region. We expose the poor taxonomic knowledge of most groups, which makes it difficult to comment on patterns of richness and endemism.
- Full Text:
- Date Issued: 2019
- Authors: Bird, Matthew S , Mlambo, Musa C , Wasserman, Ryan J , Dalu, Tatenda , Holland, Alexandra J , Day, Jenny A , Villet, Martin H , Bilton, David T , Barber-James, Helen M , Brendonck, Luc
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140784 , vital:37918 , DOI: 10.1007/s10750-018-3772-z
- Description: Temporary lentic wetlands are becoming increasingly recognised for their collective role in contributing to biodiversity at the landscape scale. In southern Africa, a region with a high density of such wetlands, information characterising the fauna of these systems is disparate and often obscurely published. Here we provide a collation and synthesis of published research on the aquatic invertebrate fauna inhabiting temporary lentic wetlands of the region. We expose the poor taxonomic knowledge of most groups, which makes it difficult to comment on patterns of richness and endemism.
- Full Text:
- Date Issued: 2019
Report of the multidisciplinary investigation of differentiation and potential hybridisation between two Yellowfish species Labeobarbus Kimberleyensis and L. Aeneus from the Orange-Vaal system
- Bloomer, Paulette, Villet, Martin H, Bills, Ian R, Van der Bank, F Herman, Jones, Nick, Walsh, Gina
- Authors: Bloomer, Paulette , Villet, Martin H , Bills, Ian R , Van der Bank, F Herman , Jones, Nick , Walsh, Gina
- Date: 2007
- Language: English
- Type: Report
- Identifier: vital:7162 , http://hdl.handle.net/10962/d1011937
- Description: From the executive summary]: The relationships within and between two yellowfish species, Labeobarbus aeneus (smallmouth yellowfish) and L. kimberleyensis (largemouth yellowfish) from the Orange-Vaal system were investigated through three independently conducted studies of the same material collected from the Sak River (the type locality of L. aeneus), the upper Orange River at Aliwal North and the lower Orange River at Pella and Onseepkans.
- Full Text:
- Date Issued: 2007
- Authors: Bloomer, Paulette , Villet, Martin H , Bills, Ian R , Van der Bank, F Herman , Jones, Nick , Walsh, Gina
- Date: 2007
- Language: English
- Type: Report
- Identifier: vital:7162 , http://hdl.handle.net/10962/d1011937
- Description: From the executive summary]: The relationships within and between two yellowfish species, Labeobarbus aeneus (smallmouth yellowfish) and L. kimberleyensis (largemouth yellowfish) from the Orange-Vaal system were investigated through three independently conducted studies of the same material collected from the Sak River (the type locality of L. aeneus), the upper Orange River at Aliwal North and the lower Orange River at Pella and Onseepkans.
- Full Text:
- Date Issued: 2007
Diversity of bacteria isolated from the flies Musca domestica (Muscidae) andChrysomya megacephala (Calliphoridae) with emphasis on vectored pathogens
- Brits, Devon, Brooks, Margot, Villet, Martin H
- Authors: Brits, Devon , Brooks, Margot , Villet, Martin H
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66904 , vital:28998 , ISSN 1021-3589 , https://doi.org/10.4001/003.024.0365
- Description: Publisher version , We evaluated the bacteria occurring externally on Musca domestica and Chrysomya megacephala, the two most common synanthropic flies which may be found at many refuse sites throughout the world. Bacteria cultured from 10 specimens of each species were isolated, Gram-stained and examined microscopically, and divided into morphologically distinct ‘pseudospecies', to avoid excessive duplication of genetic identification. About 350 bp of the 16S ribosomalRNAgene was amplified from genomicDNAextracted from each ‘pseudospecies', sequenced, and bacteria identified using BLASTn. Nineteen different types of colony were identified from M. domestica, with Pseudomonas sp. and Swine Manure Bacterium SP14 being most abundant. Chrysomya megacephala yielded 15 distinct pseudospecies with total colony counts approximating to 10 000 from 10 plates, where 80 % of colonies were non-pathogenic Bacillus pumilus. A total of 18 species were identified genetically: three shared by the fly species; four unique to C. megacephala, and 13 unique to M. domestica. Half of these 18 species were pathogenic, two or three others were food spoilers and the rest were environmental or commensal bacteria from soil or plant matter. This study added three new pathogenic strains of bacteria and one new environmental strain to the list of bacteria reported to be vectored by these flies.
- Full Text: false
- Date Issued: 2016
- Authors: Brits, Devon , Brooks, Margot , Villet, Martin H
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66904 , vital:28998 , ISSN 1021-3589 , https://doi.org/10.4001/003.024.0365
- Description: Publisher version , We evaluated the bacteria occurring externally on Musca domestica and Chrysomya megacephala, the two most common synanthropic flies which may be found at many refuse sites throughout the world. Bacteria cultured from 10 specimens of each species were isolated, Gram-stained and examined microscopically, and divided into morphologically distinct ‘pseudospecies', to avoid excessive duplication of genetic identification. About 350 bp of the 16S ribosomalRNAgene was amplified from genomicDNAextracted from each ‘pseudospecies', sequenced, and bacteria identified using BLASTn. Nineteen different types of colony were identified from M. domestica, with Pseudomonas sp. and Swine Manure Bacterium SP14 being most abundant. Chrysomya megacephala yielded 15 distinct pseudospecies with total colony counts approximating to 10 000 from 10 plates, where 80 % of colonies were non-pathogenic Bacillus pumilus. A total of 18 species were identified genetically: three shared by the fly species; four unique to C. megacephala, and 13 unique to M. domestica. Half of these 18 species were pathogenic, two or three others were food spoilers and the rest were environmental or commensal bacteria from soil or plant matter. This study added three new pathogenic strains of bacteria and one new environmental strain to the list of bacteria reported to be vectored by these flies.
- Full Text: false
- Date Issued: 2016
Spermiogenesis in three species of cicadas (Hemiptera: Cicadidae)
- Chawanji, A S, Hodgson, Alan N, Villet, Martin H, Sanborn, Allen F, Phillips, P K
- Authors: Chawanji, A S , Hodgson, Alan N , Villet, Martin H , Sanborn, Allen F , Phillips, P K
- Date: 2007
- Language: English
- Type: Article
- Identifier: vital:6865 , http://hdl.handle.net/10962/d1011207
- Description: Spermiogenesis in three species of cicadas representing one cicadettine (Monomatapa matoposa Boulard) and two cicadines (Diceroprocta biconica [Walker] and Kongota punctigera [Walker]) was investigated by light and electron microscopy. Although spermiogenesis was occurring in the testis of adult males of all species, earlier spermiogenic stages were observed in D. biconica only. While spermiogenesis was similar to that described for other insects, some differences were noted. For example granular material did not assemble around the centriole to form a centriolar adjunct but did accumulate in the cytoplasm of early spermatids adjacent to a region of the nuclear membrane where nuclear pores were aggregated. In late spermatids this material accumulated anterior to the mitochondrial derivatives in a developing postero-lateral nuclear groove. While this material has been named the ‘centriolar adjunct’ by previous authors, its formation away from the centriole raises questions about its true identity. Second, during acrosome maturation an ante-acrosomal region of cytoplasm develops. Although present in later spermatids, this region is lost in spermatozoa. Interspecific variations in chromatin condensation patterns and the number of microtubule layers encircling the spermatid nucleus during spermiogenesis were noted.
- Full Text:
- Date Issued: 2007
- Authors: Chawanji, A S , Hodgson, Alan N , Villet, Martin H , Sanborn, Allen F , Phillips, P K
- Date: 2007
- Language: English
- Type: Article
- Identifier: vital:6865 , http://hdl.handle.net/10962/d1011207
- Description: Spermiogenesis in three species of cicadas representing one cicadettine (Monomatapa matoposa Boulard) and two cicadines (Diceroprocta biconica [Walker] and Kongota punctigera [Walker]) was investigated by light and electron microscopy. Although spermiogenesis was occurring in the testis of adult males of all species, earlier spermiogenic stages were observed in D. biconica only. While spermiogenesis was similar to that described for other insects, some differences were noted. For example granular material did not assemble around the centriole to form a centriolar adjunct but did accumulate in the cytoplasm of early spermatids adjacent to a region of the nuclear membrane where nuclear pores were aggregated. In late spermatids this material accumulated anterior to the mitochondrial derivatives in a developing postero-lateral nuclear groove. While this material has been named the ‘centriolar adjunct’ by previous authors, its formation away from the centriole raises questions about its true identity. Second, during acrosome maturation an ante-acrosomal region of cytoplasm develops. Although present in later spermatids, this region is lost in spermatozoa. Interspecific variations in chromatin condensation patterns and the number of microtubule layers encircling the spermatid nucleus during spermiogenesis were noted.
- Full Text:
- Date Issued: 2007
Sperm morphology in five species of cicadettine cicadas (Hemiptera: Cicadomorpha: Cicadidae)
- Chawanji, A S, Hodgson, Alan N, Villet, Martin H
- Authors: Chawanji, A S , Hodgson, Alan N , Villet, Martin H
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6930 , http://hdl.handle.net/10962/d1011948
- Description: Mature spermatozoa from five species of cicadas of the subfamily Cicadettinae (Quintilia wealei, Melampsalta leucoptera, Stagira simplex, Xosopsaltria thunbergi and Monomatapa matoposa) were examined by light and electron microscopy. In each species sperm are elongate, aggregated into organized bundles with their heads embedded in a homogenous matrix to form spermatodesmata, and exhibit polymegaly. The head of the sperm consist of an anteriorly positioned conical acrosome that has a tubular substructure and a deep, posterior invagination that forms the subacrosomal space (eccentrically positioned anteriorly). The acrosome is flattened anteriorly; posteriorly it extends along either side of the nucleus as two tubular processes that gradually decrease in diameter. The filiform nucleus tapers anteriorly and intrudes into the subscrosomal space. Posteriorly the nucleus has a lateral invagination that houses material of the so-called centriolar adjunct. Posterior to the centriolar adjuct and the nucleus are two crystalline mitochondrial derivatives and a centriole, respectively, the latter giving rise to the axoneme, which has a 9 + 9 + 2 arrangement of microtubules. In these respects the sperm are similar to those of platypleurine cicadas. However, some features seem unique to cicadettines, including the structural organization of an enlarged centriolar adjunct and the dimensions of the tails. The enlarged centriolar adjunct has a lamella-like substructure and can be considered a synapomorphic character in the Cicadettinae. It is, therefore, potentially useful in the separation of this subfamily from the Cicadinae. In addition, the great length of the sperm nucleus of long-headed sperm in M. matoposa could be a synapomorphy of this genus and related taphurine and cicadettine species.
- Full Text:
- Date Issued: 2006
- Authors: Chawanji, A S , Hodgson, Alan N , Villet, Martin H
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6930 , http://hdl.handle.net/10962/d1011948
- Description: Mature spermatozoa from five species of cicadas of the subfamily Cicadettinae (Quintilia wealei, Melampsalta leucoptera, Stagira simplex, Xosopsaltria thunbergi and Monomatapa matoposa) were examined by light and electron microscopy. In each species sperm are elongate, aggregated into organized bundles with their heads embedded in a homogenous matrix to form spermatodesmata, and exhibit polymegaly. The head of the sperm consist of an anteriorly positioned conical acrosome that has a tubular substructure and a deep, posterior invagination that forms the subacrosomal space (eccentrically positioned anteriorly). The acrosome is flattened anteriorly; posteriorly it extends along either side of the nucleus as two tubular processes that gradually decrease in diameter. The filiform nucleus tapers anteriorly and intrudes into the subscrosomal space. Posteriorly the nucleus has a lateral invagination that houses material of the so-called centriolar adjunct. Posterior to the centriolar adjuct and the nucleus are two crystalline mitochondrial derivatives and a centriole, respectively, the latter giving rise to the axoneme, which has a 9 + 9 + 2 arrangement of microtubules. In these respects the sperm are similar to those of platypleurine cicadas. However, some features seem unique to cicadettines, including the structural organization of an enlarged centriolar adjunct and the dimensions of the tails. The enlarged centriolar adjunct has a lamella-like substructure and can be considered a synapomorphic character in the Cicadettinae. It is, therefore, potentially useful in the separation of this subfamily from the Cicadinae. In addition, the great length of the sperm nucleus of long-headed sperm in M. matoposa could be a synapomorphy of this genus and related taphurine and cicadettine species.
- Full Text:
- Date Issued: 2006
Sperm morphology in four species of African platypleurine cicadas (Hemiptera: Cicadomorpha: Cicadidae)
- Chawanji, A S, Hodgson, Alan N, Villet, Martin H
- Authors: Chawanji, A S , Hodgson, Alan N , Villet, Martin H
- Date: 2005
- Language: English
- Type: Article
- Identifier: vital:6917 , http://hdl.handle.net/10962/d1011880
- Description: Mature spermatozoa from four species of platypleurine cicadas (Albanycada albigera, Azanicada zuluensis, Platypleura capensis and P. hirtipennis) were examined by light and electron microscopy. The filiform sperm have a similar ultrastructure in all species but notable variations were found in sperm dimensions. All species produce more than one discrete length of nucleated, motile sperm, a form of polymorphism termed polymegaly. Polymegaly is expressed in two ways: sperm have bi- or trimodal head and tail lengths. The anterior parts of sperm heads are embedded in an elongate homogenous matrix forming a spermatodesm. The conical acrosome is deeply invaginated posteriorly, and sits on top of the nucleus. The acrosomal contents are differentiated internally with an electron-lucent central medulla and a denser cortex. The homogenously electron-dense nucleus is pointed anteriorly and is generally cylindrical, although posteriorly there is a lateral invagination that extends part-way along the nucleus. This invagination houses fine granular material of the centriolar adjunct. Vesicle-like elements that are associated with both the posterior nucleus and the centriolar adjunct are also found within the invagination. Immediately posterior of and adjoining the centriolar adjunct is a pair of mitochondrial derivatives that are elongated and extend for almost the entire length of the tail. The absence of accessory bodies in cicada sperm suggests that within the Cicadomorpha, the families Cicadidae and Cercopidae are closely affiliated.
- Full Text:
- Date Issued: 2005
- Authors: Chawanji, A S , Hodgson, Alan N , Villet, Martin H
- Date: 2005
- Language: English
- Type: Article
- Identifier: vital:6917 , http://hdl.handle.net/10962/d1011880
- Description: Mature spermatozoa from four species of platypleurine cicadas (Albanycada albigera, Azanicada zuluensis, Platypleura capensis and P. hirtipennis) were examined by light and electron microscopy. The filiform sperm have a similar ultrastructure in all species but notable variations were found in sperm dimensions. All species produce more than one discrete length of nucleated, motile sperm, a form of polymorphism termed polymegaly. Polymegaly is expressed in two ways: sperm have bi- or trimodal head and tail lengths. The anterior parts of sperm heads are embedded in an elongate homogenous matrix forming a spermatodesm. The conical acrosome is deeply invaginated posteriorly, and sits on top of the nucleus. The acrosomal contents are differentiated internally with an electron-lucent central medulla and a denser cortex. The homogenously electron-dense nucleus is pointed anteriorly and is generally cylindrical, although posteriorly there is a lateral invagination that extends part-way along the nucleus. This invagination houses fine granular material of the centriolar adjunct. Vesicle-like elements that are associated with both the posterior nucleus and the centriolar adjunct are also found within the invagination. Immediately posterior of and adjoining the centriolar adjunct is a pair of mitochondrial derivatives that are elongated and extend for almost the entire length of the tail. The absence of accessory bodies in cicada sperm suggests that within the Cicadomorpha, the families Cicadidae and Cercopidae are closely affiliated.
- Full Text:
- Date Issued: 2005
3000 miles from home: a new Gastrosericus baobabicus Pulawski, 1995 (Hymenoptera, Larridae) distribution record highlights that the Sahel has a distinct entomofaunal signature
- Clitheroe, C-L, Villet, Martin H
- Authors: Clitheroe, C-L , Villet, Martin H
- Date: 2011
- Language: English
- Type: Article
- Identifier: vital:6846 , http://hdl.handle.net/10962/d1011099
- Description: [from introduction] On October 30, 1953, an unidentified female wasp (Fig. 1) was collected from ‘Belet Uen, Somaliland’ (= Beledweyne, 4°44’N 45°12’E), situated in the valley of the Shebelle River, HiraanProvince,Somalia. It was deposited in the aculeate Hymenoptera collection of the Albany Museum, Grahamstown by D. Greathead prior to 1968. Apart from the words ‘Somaliland’ and ‘Desert Locust Survey’ the label is handwritten and the collector’snameis not recorded. Greathead’s sister, S. Gess (Albany Museum), deciphered the label and stated that he had worked for the Desert Locust Survey, investigating the natural enemies of locusts and had been in Somalia (then Somaliland) at that time (Murphy & Cock 2007). The specimen was sent in 2004 by F. Gess to W. Pulawski, who determined it as Gastrosericus baobabicus Pulawski, 1995. Gastrosericus species prey on spiders and a variety of small insects (Pulawski 1995), including Orthoptera (Krombein & Pulawski 1986), so it is likely that Greathead collected the specimen in connection with his interest in the insect enemies of Acridoidea (Orthoptera) (Greathead 1962).
- Full Text:
- Date Issued: 2011
- Authors: Clitheroe, C-L , Villet, Martin H
- Date: 2011
- Language: English
- Type: Article
- Identifier: vital:6846 , http://hdl.handle.net/10962/d1011099
- Description: [from introduction] On October 30, 1953, an unidentified female wasp (Fig. 1) was collected from ‘Belet Uen, Somaliland’ (= Beledweyne, 4°44’N 45°12’E), situated in the valley of the Shebelle River, HiraanProvince,Somalia. It was deposited in the aculeate Hymenoptera collection of the Albany Museum, Grahamstown by D. Greathead prior to 1968. Apart from the words ‘Somaliland’ and ‘Desert Locust Survey’ the label is handwritten and the collector’snameis not recorded. Greathead’s sister, S. Gess (Albany Museum), deciphered the label and stated that he had worked for the Desert Locust Survey, investigating the natural enemies of locusts and had been in Somalia (then Somaliland) at that time (Murphy & Cock 2007). The specimen was sent in 2004 by F. Gess to W. Pulawski, who determined it as Gastrosericus baobabicus Pulawski, 1995. Gastrosericus species prey on spiders and a variety of small insects (Pulawski 1995), including Orthoptera (Krombein & Pulawski 1986), so it is likely that Greathead collected the specimen in connection with his interest in the insect enemies of Acridoidea (Orthoptera) (Greathead 1962).
- Full Text:
- Date Issued: 2011
Molecular phylogeny of Chondrocyclus (Gastropoda: Cyclophoridae), a widespread genus of sedentary, restricted-range snails:
- Cole, Mary L, Raheem, Dinarzarde C, Villet, Martin H
- Authors: Cole, Mary L , Raheem, Dinarzarde C , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140761 , vital:37916 , DOI: 10.1016/j.ympev.2018.09.018
- Description: The genus Chondrocyclus Ancey, 1898 contains the majority of southern African members of the Cyclophoridae, a large family of operculate land snails. We present the first molecular phylogeny of the genus based on two mitochondrial genes (16S and CO1) and complement this with an appraisal of morphological characters relating to the shell and soft parts. Worn shells on which some descriptions and records of different species were based appear to be indistinguishable morphologically, creating taxonomic confusion. We show that Chondrocyclus s.l. underwent two major radiations, one Afromontane and the other largely coastal.
- Full Text:
- Date Issued: 2019
- Authors: Cole, Mary L , Raheem, Dinarzarde C , Villet, Martin H
- Date: 2019
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140761 , vital:37916 , DOI: 10.1016/j.ympev.2018.09.018
- Description: The genus Chondrocyclus Ancey, 1898 contains the majority of southern African members of the Cyclophoridae, a large family of operculate land snails. We present the first molecular phylogeny of the genus based on two mitochondrial genes (16S and CO1) and complement this with an appraisal of morphological characters relating to the shell and soft parts. Worn shells on which some descriptions and records of different species were based appear to be indistinguishable morphologically, creating taxonomic confusion. We show that Chondrocyclus s.l. underwent two major radiations, one Afromontane and the other largely coastal.
- Full Text:
- Date Issued: 2019
Forensic entomotoxicology revisited: towards professional standardisation of study designs
- da Silva, Erica I T, Wilhelmi, Brendan S, Villet, Martin H
- Authors: da Silva, Erica I T , Wilhelmi, Brendan S , Villet, Martin H
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140819 , vital:37921 , DOI: 10.1007/s00414-017-1603-9
- Description: Forensic entomotoxicology is the use of insects as evidence of whether a toxicant is present in an environment such as a corpse, river or landscape. The earliest overtly forensic study was published in 1977, and since then, at least 63 papers have been published, most of them focused on the detection of toxicants in insects or on effects of toxicants on diverse insect indicator taxa. A comprehensive review of the published literature revealed various inconsistencies between studies that could be addressed by introducing standard protocols for such studies. These protocols could include selecting widespread and common model organisms (such as Lucilia sericata, Calliphora vicina, Chrysomya megacephala and Dermestes maculatus) and model toxicants (e.g. morphine and amitriptyline) to build up comparative databases; developing a standard matrix for use as a feeding substrate; setting guidelines for statistically adequate sample sizes; and deploying more sophisticated analytical methods from the general field of toxicology.
- Full Text:
- Date Issued: 2017
- Authors: da Silva, Erica I T , Wilhelmi, Brendan S , Villet, Martin H
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140819 , vital:37921 , DOI: 10.1007/s00414-017-1603-9
- Description: Forensic entomotoxicology is the use of insects as evidence of whether a toxicant is present in an environment such as a corpse, river or landscape. The earliest overtly forensic study was published in 1977, and since then, at least 63 papers have been published, most of them focused on the detection of toxicants in insects or on effects of toxicants on diverse insect indicator taxa. A comprehensive review of the published literature revealed various inconsistencies between studies that could be addressed by introducing standard protocols for such studies. These protocols could include selecting widespread and common model organisms (such as Lucilia sericata, Calliphora vicina, Chrysomya megacephala and Dermestes maculatus) and model toxicants (e.g. morphine and amitriptyline) to build up comparative databases; developing a standard matrix for use as a feeding substrate; setting guidelines for statistically adequate sample sizes; and deploying more sophisticated analytical methods from the general field of toxicology.
- Full Text:
- Date Issued: 2017
Determination of species and instars of the larvae of the Afrotropical species of Thanatophilus Leach, 1817 (Coleoptera, Silphidae)
- Daniel, Claire A, Midgley, John M, Villet, Martin H
- Authors: Daniel, Claire A , Midgley, John M , Villet, Martin H
- Date: 2017
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59682 , vital:27638 , doi: 10.3897/afrinvertebr.58.12966
- Description: Thanatophilus micans and T. mutilatus have significance for forensic entomology. Their larvae are therefore described and a key is provided for identifying the larvae of Afrotropical Silphidae based on morphological characters. It is shown that seven common species of Thanatophilus can be distinguished by a 360 bp mtDNA sequence from the cytochrome oxidase I gene.
- Full Text:
- Date Issued: 2017
- Authors: Daniel, Claire A , Midgley, John M , Villet, Martin H
- Date: 2017
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59682 , vital:27638 , doi: 10.3897/afrinvertebr.58.12966
- Description: Thanatophilus micans and T. mutilatus have significance for forensic entomology. Their larvae are therefore described and a key is provided for identifying the larvae of Afrotropical Silphidae based on morphological characters. It is shown that seven common species of Thanatophilus can be distinguished by a 360 bp mtDNA sequence from the cytochrome oxidase I gene.
- Full Text:
- Date Issued: 2017
A global study of forensically significant calliphorids: implications for identification
- Harvey, M L, Gaudieri, S, Villet, Martin H, Dadour, I R
- Authors: Harvey, M L , Gaudieri, S , Villet, Martin H , Dadour, I R
- Date: 2008
- Language: English
- Type: text , Article
- Identifier: vital:6863 , http://hdl.handle.net/10962/d1011156
- Description: A proliferation of molecular studies of the forensically significant Calliphoridae in the last decade has seen molecule-based identification of immature and damaged specimens become a routine complement to traditional morphological identification as a preliminary to the accurate estimation of post-mortem intervals (PMI), which depends on the use of species-specific developmental data. Published molecular studies have tended to focus on generating data for geographically localised communities of species of importance, which has limited the consideration of intraspecific variation in species of global distribution. This study used phylogenetic analysis to assess the species status of 27 forensically important calliphorid species based on 1167 base pairs of the COI gene of 119 specimens from 22 countries, and confirmed the utility of the COI gene in identifying most species. The species Lucilia cuprina, Chrysomya megacephala, Ch. saffranea, Ch. albifrontalis and Calliphora stygia were unable to be monophyletically resolved based on these data. Identification of phylogenetically young species will require a faster-evolving molecular marker, but most species could be unambiguously characterised by sampling relatively few conspecific individuals if they were from distant localities. Intraspecific geographical variation was observed within Ch. rufifacies and L. cuprina, and is discussed with reference to unrecognised species.
- Full Text:
- Date Issued: 2008
- Authors: Harvey, M L , Gaudieri, S , Villet, Martin H , Dadour, I R
- Date: 2008
- Language: English
- Type: text , Article
- Identifier: vital:6863 , http://hdl.handle.net/10962/d1011156
- Description: A proliferation of molecular studies of the forensically significant Calliphoridae in the last decade has seen molecule-based identification of immature and damaged specimens become a routine complement to traditional morphological identification as a preliminary to the accurate estimation of post-mortem intervals (PMI), which depends on the use of species-specific developmental data. Published molecular studies have tended to focus on generating data for geographically localised communities of species of importance, which has limited the consideration of intraspecific variation in species of global distribution. This study used phylogenetic analysis to assess the species status of 27 forensically important calliphorid species based on 1167 base pairs of the COI gene of 119 specimens from 22 countries, and confirmed the utility of the COI gene in identifying most species. The species Lucilia cuprina, Chrysomya megacephala, Ch. saffranea, Ch. albifrontalis and Calliphora stygia were unable to be monophyletically resolved based on these data. Identification of phylogenetically young species will require a faster-evolving molecular marker, but most species could be unambiguously characterised by sampling relatively few conspecific individuals if they were from distant localities. Intraspecific geographical variation was observed within Ch. rufifacies and L. cuprina, and is discussed with reference to unrecognised species.
- Full Text:
- Date Issued: 2008
Molecular identification of some forensically important blowflies of southern Africa and Australia
- Harvey, M L, Mansell, M W, Villet, Martin H, Dadour, I R
- Authors: Harvey, M L , Mansell, M W , Villet, Martin H , Dadour, I R
- Date: 2003
- Language: English
- Type: text , Article
- Identifier: vital:6953 , http://hdl.handle.net/10962/d1011986
- Description: One major aspect of research in forensic entomology is the investigation of molecular techniques for the accurate identification of insects. Studies to date have addressed the corpse fauna of many geographical regions, but generally neglected the southern African calliphorid species. In this study, forensically significant calliphorids from South Africa, Swaziland, Botswana and Zimbabwe and Australia were sequenced over an 1167 base pair region of the COI gene. Phylogenetic analysis was performed to examine the ability of the region to resolve species identities and taxonomic relationships between species. Analyses by neighbour-joining, maximum parsimony and maximum likelihood methods all showed the potential of this region to provide the necessary species-level identifications for application to post-mortem interval (PMI) estimation; however, higher level taxonomic relationships did vary according to method of analysis. Intraspecific variation was also considered in relation to determining suitable maximum levels of variation to be expected during analysis. Individuals of some species in the study represented populations from both South Africa and the east coast of Australia, yet maximum intraspecific variation over this gene region was calculated at 0.8%, with minimum interspecific variation at 3%, indicating distinct ranges of variation to be expected at intra- and interspecific levels. This region therefore appears to provide southern African forensic entomologists with a new technique for providing accurate identification for application to estimation of PMI.
- Full Text:
- Date Issued: 2003
- Authors: Harvey, M L , Mansell, M W , Villet, Martin H , Dadour, I R
- Date: 2003
- Language: English
- Type: text , Article
- Identifier: vital:6953 , http://hdl.handle.net/10962/d1011986
- Description: One major aspect of research in forensic entomology is the investigation of molecular techniques for the accurate identification of insects. Studies to date have addressed the corpse fauna of many geographical regions, but generally neglected the southern African calliphorid species. In this study, forensically significant calliphorids from South Africa, Swaziland, Botswana and Zimbabwe and Australia were sequenced over an 1167 base pair region of the COI gene. Phylogenetic analysis was performed to examine the ability of the region to resolve species identities and taxonomic relationships between species. Analyses by neighbour-joining, maximum parsimony and maximum likelihood methods all showed the potential of this region to provide the necessary species-level identifications for application to post-mortem interval (PMI) estimation; however, higher level taxonomic relationships did vary according to method of analysis. Intraspecific variation was also considered in relation to determining suitable maximum levels of variation to be expected during analysis. Individuals of some species in the study represented populations from both South Africa and the east coast of Australia, yet maximum intraspecific variation over this gene region was calculated at 0.8%, with minimum interspecific variation at 3%, indicating distinct ranges of variation to be expected at intra- and interspecific levels. This region therefore appears to provide southern African forensic entomologists with a new technique for providing accurate identification for application to estimation of PMI.
- Full Text:
- Date Issued: 2003
Winter absconding as a dispersal mechanism of the Cape honeybee
- Hepburn, H Randall, Villet, Martin H, Jones, G, Carter, A, Simon, V, Coetzer, W
- Authors: Hepburn, H Randall , Villet, Martin H , Jones, G , Carter, A , Simon, V , Coetzer, W
- Date: 1993
- Language: English
- Type: Article
- Identifier: vital:6862 , http://hdl.handle.net/10962/d1011154
- Description: The dispersal characteristics of the African honeybee, Apis mellifera scutellata, resulted in a greatly mobile hybrid front in the New World, but in Africa its hybridization zone with the Cape honeybee, Apis mellifera capensis, appears very stable.The maintenance of stable hybrid zones is predicated on a balance between dispersal and selection Knowledge on the extent of gene flow from either race is in its infancy, and the probability of successful dispersal by either race has not yet been considered. Both capensis and scutellata are notorious for absconding, capensis the more so for resource-related seasonal absconding in winter. The two races also differ fundamentally in the ways they conserve heat both behaviourally and physiologically. We investigated the energy consumption and colony survival characteristics of capensis in terms of winter absconding in a climate with cycles of warm days interspersed with cold days. These are compared with calculated values for scutellata to assess whether capensis might have a directional gene flow advantage over scutellata in their zone of hybridization.
- Full Text:
- Date Issued: 1993
- Authors: Hepburn, H Randall , Villet, Martin H , Jones, G , Carter, A , Simon, V , Coetzer, W
- Date: 1993
- Language: English
- Type: Article
- Identifier: vital:6862 , http://hdl.handle.net/10962/d1011154
- Description: The dispersal characteristics of the African honeybee, Apis mellifera scutellata, resulted in a greatly mobile hybrid front in the New World, but in Africa its hybridization zone with the Cape honeybee, Apis mellifera capensis, appears very stable.The maintenance of stable hybrid zones is predicated on a balance between dispersal and selection Knowledge on the extent of gene flow from either race is in its infancy, and the probability of successful dispersal by either race has not yet been considered. Both capensis and scutellata are notorious for absconding, capensis the more so for resource-related seasonal absconding in winter. The two races also differ fundamentally in the ways they conserve heat both behaviourally and physiologically. We investigated the energy consumption and colony survival characteristics of capensis in terms of winter absconding in a climate with cycles of warm days interspersed with cold days. These are compared with calculated values for scutellata to assess whether capensis might have a directional gene flow advantage over scutellata in their zone of hybridization.
- Full Text:
- Date Issued: 1993
The use of wood ash for the protection of stored cowpea seed (Vigna unguiculata (L.) Walp.) against Bruchidae (Coleoptera)
- Katanga Apuuli, J, Villet, Martin H
- Authors: Katanga Apuuli, J , Villet, Martin H
- Date: 1996
- Language: English
- Type: Article
- Identifier: vital:6864 , http://hdl.handle.net/10962/d1011196
- Description: Dry wood-ash has been reported to provide effective, cheap and safe control of several pests of stored seeds by providing mechanical protection, especially if it is thoroughly mixed with the seed. Mixtures of seed and either clays, ash, talc, or sand are among the earliest recommendations for controlling bruchids in beans (Metcalf 1917; Headlee 1924; Subramanian 1935; Deay & Amos 1936; Lever 1941). Such use of ash has been reported on subsistence farms in Uganda (Davies 1970). However, little is known of the actual ratios of ash and beans needed for effective protection, or of the mechanism of protection. These issues motivated this investigation.
- Full Text:
- Date Issued: 1996
- Authors: Katanga Apuuli, J , Villet, Martin H
- Date: 1996
- Language: English
- Type: Article
- Identifier: vital:6864 , http://hdl.handle.net/10962/d1011196
- Description: Dry wood-ash has been reported to provide effective, cheap and safe control of several pests of stored seeds by providing mechanical protection, especially if it is thoroughly mixed with the seed. Mixtures of seed and either clays, ash, talc, or sand are among the earliest recommendations for controlling bruchids in beans (Metcalf 1917; Headlee 1924; Subramanian 1935; Deay & Amos 1936; Lever 1941). Such use of ash has been reported on subsistence farms in Uganda (Davies 1970). However, little is known of the actual ratios of ash and beans needed for effective protection, or of the mechanism of protection. These issues motivated this investigation.
- Full Text:
- Date Issued: 1996
Molecular systematics of the African snake family Lamprophiidae Fitzinger, 1843 (Serpentes: Elapoidea), with particular focus on the genera Lamprophis Fitzinger 1843 and Mehelya Csiki 1903
- Kelly, Christopher M R, Branch, William R, Broadley, Donald G, Barker, Nigel P, Villet, Martin H
- Authors: Kelly, Christopher M R , Branch, William R , Broadley, Donald G , Barker, Nigel P , Villet, Martin H
- Date: 2011
- Language: English
- Type: Article
- Identifier: vital:6861 , http://hdl.handle.net/10962/d1011151
- Description: The snake family Lamprophiidae Fitzinger (Serpentes: Elapoidea) is a putatively Late Eocene radiation of nocturnal snakes endemic to the African continent. It incorporates many of the most characteristic and prolific of Africa's non-venomous snake species, including the widespread type genus Lamprophis Fitzinger, 1843 (house snakes). We used approximately 2500 bases of mitochondrial and nuclear DNA sequence data from 28 (41%) of the approximately 68 recognised lamprophiid species in nine of the eleven genera to investigate phylogenetic structure in the family and to inform taxonomy at the generic level. Cytochrome b, ND4 and tRNA gene sequences (mitochondrial) and c-mos sequences (nuclear) were analysed using Maximum Likelihood, Bayesian Inference and Maximum Parsimony methods. The genus Mehelya Csiki, 1903 was paraphyletic with respect to Gonionotophis Boulenger, 1893. To address this, the concept of Gonionotophis is expanded to include all current Mehelya species. The genus Lamprophis emerged polyphyletic: the enigmatic Lamprophis swazicus was sister to Hormonotus modestus from West Africa, and not closely related to its nominal congeners. It is moved to a new monotypic genus (Inyoka gen. nov.). The remaining Lamprophis species occur in three early-diverging lineages. (1) Lamprophis virgatus and the widely distributed Lamprophis fuliginosus species complex (which also includes Lamprophis lineatus and Lamprophis olivaceus) formed a clade for which the generic name Boaedon Duméril, Bibron & Duméril, 1854 is resurrected. (2) The water snakes (Lycodonomorphus) were nested within Lamprophis (sensu lato), sister to Lamprophis inornatus. We transfer this species to the genus Lycodonomorphus Fitzinger, 1843. (3) We restrict Lamprophis (sensu strictissimo) to a small clade of four species endemic to southern Africa: the type species of Lamprophis Fitzinger, 1843 (Lamprophis aurora) plus Lamprophis fiskii, Lamprophis fuscus and Lamprophis guttatus.
- Full Text:
- Date Issued: 2011
- Authors: Kelly, Christopher M R , Branch, William R , Broadley, Donald G , Barker, Nigel P , Villet, Martin H
- Date: 2011
- Language: English
- Type: Article
- Identifier: vital:6861 , http://hdl.handle.net/10962/d1011151
- Description: The snake family Lamprophiidae Fitzinger (Serpentes: Elapoidea) is a putatively Late Eocene radiation of nocturnal snakes endemic to the African continent. It incorporates many of the most characteristic and prolific of Africa's non-venomous snake species, including the widespread type genus Lamprophis Fitzinger, 1843 (house snakes). We used approximately 2500 bases of mitochondrial and nuclear DNA sequence data from 28 (41%) of the approximately 68 recognised lamprophiid species in nine of the eleven genera to investigate phylogenetic structure in the family and to inform taxonomy at the generic level. Cytochrome b, ND4 and tRNA gene sequences (mitochondrial) and c-mos sequences (nuclear) were analysed using Maximum Likelihood, Bayesian Inference and Maximum Parsimony methods. The genus Mehelya Csiki, 1903 was paraphyletic with respect to Gonionotophis Boulenger, 1893. To address this, the concept of Gonionotophis is expanded to include all current Mehelya species. The genus Lamprophis emerged polyphyletic: the enigmatic Lamprophis swazicus was sister to Hormonotus modestus from West Africa, and not closely related to its nominal congeners. It is moved to a new monotypic genus (Inyoka gen. nov.). The remaining Lamprophis species occur in three early-diverging lineages. (1) Lamprophis virgatus and the widely distributed Lamprophis fuliginosus species complex (which also includes Lamprophis lineatus and Lamprophis olivaceus) formed a clade for which the generic name Boaedon Duméril, Bibron & Duméril, 1854 is resurrected. (2) The water snakes (Lycodonomorphus) were nested within Lamprophis (sensu lato), sister to Lamprophis inornatus. We transfer this species to the genus Lycodonomorphus Fitzinger, 1843. (3) We restrict Lamprophis (sensu strictissimo) to a small clade of four species endemic to southern Africa: the type species of Lamprophis Fitzinger, 1843 (Lamprophis aurora) plus Lamprophis fiskii, Lamprophis fuscus and Lamprophis guttatus.
- Full Text:
- Date Issued: 2011
Phylogenetics of advanced snakes (Caenophidia) based on four mitochondrial genes
- Kelly, Christopher M R, Barker, Nigel P, Villet, Martin H
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H
- Date: 2003
- Language: English
- Type: Article
- Identifier: vital:6960 , http://hdl.handle.net/10962/d1012005
- Description: Phylogenetic relationships among advanced snakes ( Acrochordus + Colubroidea = Caenophidia) and the position of the genus Acrochordus relative to colubroid taxa are contentious. These concerns were investigated by phylogenetic analysis of fragments from four mitochondrial genes representing 62 caenophidian genera and 5 noncaenophidian taxa. Four methods of phylogeny reconstruction were applied: matrix representation with parsimony (MRP) supertree consensus, maximum parsimony, maximum likelihood, and Bayesian analysis. Because of incomplete sampling, extensive missing data were inherent in this study. Analyses of individual genes retrieved roughly the same clades, but branching order varied greatly between gene trees, and nodal support was poor. Trees generated from combined data sets using maximum parsimony, maximum likelihood, and Bayesian analysis had medium to low nodal support but were largely congruent with each other and with MRP supertrees. Conclusions about caenophidian relationships were based on these combined analyses. The Xenoderminae, Viperidae, Pareatinae, Psammophiinae, Pseudoxyrophiinae, Homalopsinae, Natricinae, Xenodontinae, and Colubrinae (redefined) emerged as monophyletic, whereas Lamprophiinae, Atractaspididae, and Elapidae were not in one or more topologies. A clade comprising Acrochordus and Xenoderminae branched closest to the root, and when Acrochordus was assessed in relation to a colubroid subsample and all five noncaenophidians, it remained associated with the Colubroidea. Thus, Acrochordus + Xenoderminae appears to be the sister group to the Colubroidea, and Xenoderminae should be excluded from Colubroidea. Within Colubroidea, Viperidae was the most basal clade. Other relationships appearing in all final topologies were (1) a clade comprising Psammophiinae, Lamprophiinae, Atractaspididae, Pseudoxyrophiinae, and Elapidae, within which the latter four taxa formed a subclade, and (2) a clade comprising Colubrinae, Natricinae, and Xenodontinae, within which the latter two taxa formed a subclade. Pareatinae and Homalopsinae were the most unstable clades.
- Full Text:
- Date Issued: 2003
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H
- Date: 2003
- Language: English
- Type: Article
- Identifier: vital:6960 , http://hdl.handle.net/10962/d1012005
- Description: Phylogenetic relationships among advanced snakes ( Acrochordus + Colubroidea = Caenophidia) and the position of the genus Acrochordus relative to colubroid taxa are contentious. These concerns were investigated by phylogenetic analysis of fragments from four mitochondrial genes representing 62 caenophidian genera and 5 noncaenophidian taxa. Four methods of phylogeny reconstruction were applied: matrix representation with parsimony (MRP) supertree consensus, maximum parsimony, maximum likelihood, and Bayesian analysis. Because of incomplete sampling, extensive missing data were inherent in this study. Analyses of individual genes retrieved roughly the same clades, but branching order varied greatly between gene trees, and nodal support was poor. Trees generated from combined data sets using maximum parsimony, maximum likelihood, and Bayesian analysis had medium to low nodal support but were largely congruent with each other and with MRP supertrees. Conclusions about caenophidian relationships were based on these combined analyses. The Xenoderminae, Viperidae, Pareatinae, Psammophiinae, Pseudoxyrophiinae, Homalopsinae, Natricinae, Xenodontinae, and Colubrinae (redefined) emerged as monophyletic, whereas Lamprophiinae, Atractaspididae, and Elapidae were not in one or more topologies. A clade comprising Acrochordus and Xenoderminae branched closest to the root, and when Acrochordus was assessed in relation to a colubroid subsample and all five noncaenophidians, it remained associated with the Colubroidea. Thus, Acrochordus + Xenoderminae appears to be the sister group to the Colubroidea, and Xenoderminae should be excluded from Colubroidea. Within Colubroidea, Viperidae was the most basal clade. Other relationships appearing in all final topologies were (1) a clade comprising Psammophiinae, Lamprophiinae, Atractaspididae, Pseudoxyrophiinae, and Elapidae, within which the latter four taxa formed a subclade, and (2) a clade comprising Colubrinae, Natricinae, and Xenodontinae, within which the latter two taxa formed a subclade. Pareatinae and Homalopsinae were the most unstable clades.
- Full Text:
- Date Issued: 2003
The snake family Psammophiidae (Reptilia: Serpentes): phylogenetics and species delimitation in the African sand snakes (Psammophis Boie, 1825) and allied genera
- Kelly, Christopher M R, Barker, Nigel P, Villet, Martin H, Broadley, Donald G, Branch, William R
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H , Broadley, Donald G , Branch, William R
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6522 , http://hdl.handle.net/10962/d1005953
- Description: This study constitutes the first evolutionary investigation of the snake family Psammophiidae—the most widespread, most clearly defined, yet perhaps the taxonomically most problematic of Africa's familylevel snake lineages. Little is known of psammophiid evolutionary relationships, and the type genus Psammophis is one of the largest and taxonomically most complex of the African snake genera. Our aims were to reconstruct psammophiid phylogenetic relationships and to improve characterisation of species boundaries in problematic Psammophis species complexes. We used approximately 2500 bases of DNA sequence from the mitochondrial and nuclear genomes, and 114 terminals covering all psammophiid genera and incorporating approximately 75% of recognised species and subspecies. Phylogenetic reconstructions were conducted primarily in a Bayesian framework and we used the Wiens/Penkrot protocol to aid species delimitation. Rhamphiophis is diphyletic, with Rhamphiophis acutus emerging sister to Psammophylax. Consequently we transfer the three subspecies of Rhamphiophis acutus to the genus Psammophylax. The monotypic genus Dipsina is sister to Psammophis. The two species of Dromophis occupy divergent positions deeply nested within Psammophis, and we therefore relegate Dromophis to the synonymy of Psammophis. Our results allow division of the taxonomically problematic Psammophis 'sibilans' species complex into two monophyletic entities, provisionally named the 'phillipsii' and 'subtaeniatus' complexes. Within these two clades we found support for the status of many existing species, but not for a distinction between P.p. phillipsii and P. mossambicus. Additionally, P. cf. phillipsii occidentalis deserves species status as the sister taxon of P. brevirostris.
- Full Text:
- Date Issued: 2008
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H , Broadley, Donald G , Branch, William R
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6522 , http://hdl.handle.net/10962/d1005953
- Description: This study constitutes the first evolutionary investigation of the snake family Psammophiidae—the most widespread, most clearly defined, yet perhaps the taxonomically most problematic of Africa's familylevel snake lineages. Little is known of psammophiid evolutionary relationships, and the type genus Psammophis is one of the largest and taxonomically most complex of the African snake genera. Our aims were to reconstruct psammophiid phylogenetic relationships and to improve characterisation of species boundaries in problematic Psammophis species complexes. We used approximately 2500 bases of DNA sequence from the mitochondrial and nuclear genomes, and 114 terminals covering all psammophiid genera and incorporating approximately 75% of recognised species and subspecies. Phylogenetic reconstructions were conducted primarily in a Bayesian framework and we used the Wiens/Penkrot protocol to aid species delimitation. Rhamphiophis is diphyletic, with Rhamphiophis acutus emerging sister to Psammophylax. Consequently we transfer the three subspecies of Rhamphiophis acutus to the genus Psammophylax. The monotypic genus Dipsina is sister to Psammophis. The two species of Dromophis occupy divergent positions deeply nested within Psammophis, and we therefore relegate Dromophis to the synonymy of Psammophis. Our results allow division of the taxonomically problematic Psammophis 'sibilans' species complex into two monophyletic entities, provisionally named the 'phillipsii' and 'subtaeniatus' complexes. Within these two clades we found support for the status of many existing species, but not for a distinction between P.p. phillipsii and P. mossambicus. Additionally, P. cf. phillipsii occidentalis deserves species status as the sister taxon of P. brevirostris.
- Full Text:
- Date Issued: 2008