A characterization of landslide occurrence in the Kigezi Highlands of South Western Uganda
- Authors: Nseka, Denis
- Date: 2018
- Subjects: Landslides -- Uganda , Land degradation -- Uganda Earth movements
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/33791 , vital:33029
- Description: The frequency and magnitude of landslide occurrence in the Kigezi highlands of South Western Uganda has increased, but the key underpinnings of the occurrences are yet to be understood. The overall aim of this study was to characterize the parameters underpinning landslide occurrence in the Kigezi highlands. This information is important for predicting or identifying actual and potential landslide sites. This should inform policy, particularly in terms of developing early warning systems to landslide hazards in these highlands. The present study analysed the area’s topography, soil properties as well as land use and cover changes underpinning the spatialtemporal distribution of landslide occurrence in the region. The present study focussed on selected topographic parameters including slope gradient, profile curvature, Topographic Wetness Index (TWI), Stream Power Index (SPI), and Topographic Position Index (TPI). These factors were parameterized in the field and GIS environment using a 10 m Digital Elevation Model. Sixty five landslide features were surveyed and mapped. Soil properties were characterised in relation to slope position. Onsite soil property analysis was conducted within the landslide scars, auger holes and full profile representative sites. Furthermore, soil infiltration and strength tests, as well as clay mineralogy analyses were also conducted. An analysis of the spatial-temporal land use and cover changes was undertaken using satellite imagery spanning the period between 1985 and 2015. Landslides were noted to concentrate along topographic hollows in the landscape. The occurrence is dominant where slope gradient is between 25˚ and 35˚, profile curvature between 0.1 and 5, TWI between 8 and 18, SPI >10 and TPI between -1 and 1. Landslides are less pronounced on slope zones where slope gradient is <15˚ and >45˚, profile curvature <0, TWI <8 and >18, SPI <10 and TPI >1. Deep soil profiles ranging between 2.5 and 7 meters are a major characteristic of the study area. Soils are characterized by clay pans at a depth ranging between 0.75 and 3 meters within the profiles. The study area is dominated by clay texture, except for the uppermost surface horizons, which are loamy sand. All surface horizons analysed had the percentage of sand, silt and clay ranging from 33 to 55%, 22 to 40% and 10 to 30% respectively. In the deeper horizons, sand was observed to reduce drastically to less than 23%, while clay increased to greater than 50%. The clay content is very high in the deeper horizons exceeding 35%. By implication, such soils with a very high clay content and plasticity index are considered as Vertisols, with a profound influence in the occurrence of landslides. The top soil predominantly contains more quartz, while subsurface horizons have considerable amounts of illite/muscovite as the dominant clay minerals, ranging from 43% to 47 %. The liquid limit, plasticity index, computed weighted plasticity index (PIw), expansiveness (ɛex) and dispersion ranging from 50, 22, 17, 10 and 23 to 66, 44,34,54 and 64, respectively also have strong implications for landslide occurrence. Landslides are not normally experienced during or immediately after extreme rainfall events but occur later in the rainfall season. By implication, this time lag in landslide occurrence and rainfall distribution, is due to the initial infiltration through quartz dominated upper soil layers, before illite/muscovite clays in the lower soil horizons get saturated. Whereas forest cover reduced from 40 % in 1985 to 8% in 2015, cultivated land and settlements increased from 16% and 11% to 52% and 25% respectively during the same period. The distribution of cultivated land decreased in lower slope sections within gradient group < 15˚ by 59%. It however increased in upper sections within gradient cluster 25˚ to 35˚ by over 85% during the study period. There is a shift of cultivated land to the steeper sensitive upper slope elements associated with landslides in the study area. More than 50% of the landslides are occurring on cultivated land, 20% on settlements while less than 15 % and 10% are occurring on grassland and forests with degraded areas respectively. Landslides in Kigezi highlands are triggered by a complex interaction of multiple- factors, including dynamic triggers and ground condition variables. Topographic hollows are convergence zones within the landscape where all the parameters interact to cause landslides. Topographic hollows are therefore potential and actual landslide sites in the study area. Characterized by deep soil horizons with high clay content dominated by illite/muscovite minerals in the sub soils and profile concave forms with moderately steep slopes, topographic hollows are the most vulnerable slope elements to landslide occurrence. The spatial temporal patterns of landslide occurrence in the study area has changed due to increased cultivation of steep middle and upper slopes. Characterized by deep soil horizons with high clay content dominated by illite/muscovite minerals in the sub soils and profile concave forms with moderately steep slopes, topographic hollows are the most vulnerable slope elements to landslide occurrence. The spatial-temporal patterns of landslide occurrence in the study area has changed due to increased cultivation of steep middle and upper slopes. A close spatial and temporal correlation between land use/cover changes and landslide occurrence is discernible. The understanding of these topographical, pedological and land use/cover parameters and their influence on landslide occurrence is important in land management. It is now possible to identify and predict actual and potential landslide zones, and also demarcate safer zones for community activities. The information generated about the area’s topographic, pedological and land cover characteristics should help in vulnerability mitigation and enhance community resilience to landslide hazards in this fragile highland ecosystem. This can be done through designating zones for community activities while avoiding potential landslide zones. It is also recommended that, tree cover restoration be done in the highlands and the farmers encouraged to re-establish terrace farming while avoiding cultivation of sensitive steep middle and upper slope sections.
- Full Text:
- Date Issued: 2018
- Authors: Nseka, Denis
- Date: 2018
- Subjects: Landslides -- Uganda , Land degradation -- Uganda Earth movements
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/33791 , vital:33029
- Description: The frequency and magnitude of landslide occurrence in the Kigezi highlands of South Western Uganda has increased, but the key underpinnings of the occurrences are yet to be understood. The overall aim of this study was to characterize the parameters underpinning landslide occurrence in the Kigezi highlands. This information is important for predicting or identifying actual and potential landslide sites. This should inform policy, particularly in terms of developing early warning systems to landslide hazards in these highlands. The present study analysed the area’s topography, soil properties as well as land use and cover changes underpinning the spatialtemporal distribution of landslide occurrence in the region. The present study focussed on selected topographic parameters including slope gradient, profile curvature, Topographic Wetness Index (TWI), Stream Power Index (SPI), and Topographic Position Index (TPI). These factors were parameterized in the field and GIS environment using a 10 m Digital Elevation Model. Sixty five landslide features were surveyed and mapped. Soil properties were characterised in relation to slope position. Onsite soil property analysis was conducted within the landslide scars, auger holes and full profile representative sites. Furthermore, soil infiltration and strength tests, as well as clay mineralogy analyses were also conducted. An analysis of the spatial-temporal land use and cover changes was undertaken using satellite imagery spanning the period between 1985 and 2015. Landslides were noted to concentrate along topographic hollows in the landscape. The occurrence is dominant where slope gradient is between 25˚ and 35˚, profile curvature between 0.1 and 5, TWI between 8 and 18, SPI >10 and TPI between -1 and 1. Landslides are less pronounced on slope zones where slope gradient is <15˚ and >45˚, profile curvature <0, TWI <8 and >18, SPI <10 and TPI >1. Deep soil profiles ranging between 2.5 and 7 meters are a major characteristic of the study area. Soils are characterized by clay pans at a depth ranging between 0.75 and 3 meters within the profiles. The study area is dominated by clay texture, except for the uppermost surface horizons, which are loamy sand. All surface horizons analysed had the percentage of sand, silt and clay ranging from 33 to 55%, 22 to 40% and 10 to 30% respectively. In the deeper horizons, sand was observed to reduce drastically to less than 23%, while clay increased to greater than 50%. The clay content is very high in the deeper horizons exceeding 35%. By implication, such soils with a very high clay content and plasticity index are considered as Vertisols, with a profound influence in the occurrence of landslides. The top soil predominantly contains more quartz, while subsurface horizons have considerable amounts of illite/muscovite as the dominant clay minerals, ranging from 43% to 47 %. The liquid limit, plasticity index, computed weighted plasticity index (PIw), expansiveness (ɛex) and dispersion ranging from 50, 22, 17, 10 and 23 to 66, 44,34,54 and 64, respectively also have strong implications for landslide occurrence. Landslides are not normally experienced during or immediately after extreme rainfall events but occur later in the rainfall season. By implication, this time lag in landslide occurrence and rainfall distribution, is due to the initial infiltration through quartz dominated upper soil layers, before illite/muscovite clays in the lower soil horizons get saturated. Whereas forest cover reduced from 40 % in 1985 to 8% in 2015, cultivated land and settlements increased from 16% and 11% to 52% and 25% respectively during the same period. The distribution of cultivated land decreased in lower slope sections within gradient group < 15˚ by 59%. It however increased in upper sections within gradient cluster 25˚ to 35˚ by over 85% during the study period. There is a shift of cultivated land to the steeper sensitive upper slope elements associated with landslides in the study area. More than 50% of the landslides are occurring on cultivated land, 20% on settlements while less than 15 % and 10% are occurring on grassland and forests with degraded areas respectively. Landslides in Kigezi highlands are triggered by a complex interaction of multiple- factors, including dynamic triggers and ground condition variables. Topographic hollows are convergence zones within the landscape where all the parameters interact to cause landslides. Topographic hollows are therefore potential and actual landslide sites in the study area. Characterized by deep soil horizons with high clay content dominated by illite/muscovite minerals in the sub soils and profile concave forms with moderately steep slopes, topographic hollows are the most vulnerable slope elements to landslide occurrence. The spatial temporal patterns of landslide occurrence in the study area has changed due to increased cultivation of steep middle and upper slopes. Characterized by deep soil horizons with high clay content dominated by illite/muscovite minerals in the sub soils and profile concave forms with moderately steep slopes, topographic hollows are the most vulnerable slope elements to landslide occurrence. The spatial-temporal patterns of landslide occurrence in the study area has changed due to increased cultivation of steep middle and upper slopes. A close spatial and temporal correlation between land use/cover changes and landslide occurrence is discernible. The understanding of these topographical, pedological and land use/cover parameters and their influence on landslide occurrence is important in land management. It is now possible to identify and predict actual and potential landslide zones, and also demarcate safer zones for community activities. The information generated about the area’s topographic, pedological and land cover characteristics should help in vulnerability mitigation and enhance community resilience to landslide hazards in this fragile highland ecosystem. This can be done through designating zones for community activities while avoiding potential landslide zones. It is also recommended that, tree cover restoration be done in the highlands and the farmers encouraged to re-establish terrace farming while avoiding cultivation of sensitive steep middle and upper slope sections.
- Full Text:
- Date Issued: 2018
A comparison of conventional and ultrasonic seams in swimwear
- Authors: Tyalana, Nommiselo
- Date: 2018
- Subjects: Textile finishing , Textile finishing agents Seams (Sewing) Textile fabrics Textile fibers Textile design
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/36727 , vital:34048
- Description: Ultrasonic welding technology is a relatively new technology in apparel construction, this research forms part of a study to assess its effectiveness as a joining technology that can be used in ladies swimwear. The ultimate aim was to determine whether the ultrasonic welding joining technique could be successfully used in assembling ladies swimwear garments, comprising only synthetic fibres, namely polyester/Lycra, polyamide/Lycra, polyamide/Lycra power-net and polyamide/Lycra mesh warp knitted fabrics. These specific swimwear fabrics were selected since they comprise 100% thermoplastic synthetic fibres, considered ideal for ultrasonic welding. This study essentially compares and contrasts the performance of two seam joining techniques: namely conventional sewing and ultrasonic welding, in terms of seam strength, when used in the above mentioned four fabrics. Conventionally sewn and ultrasonically welded seams were produced, straight and curved, in both the wale and course directions of the fabrics. The conventionally sewn seams were produced using two sewing machines; namely an overlocker, also known as a mock safety sewing machine, and a cover seam machines. All conventionally sewn seams were stitched and tested under similar conditions. The ultrasonic welded seams were produced using three different wheels, a Medium Male Knurled pattern wheel, a Staggered Triple Stitch pattern wheel and a Single Stitch pattern wheel. The amplitude and speed of the welding machine, during the ultrasonic seaming, were kept constant, except when welding the polyamide/Lycra power-net and the polyamide/Lycra mesh fabrics when the pressure had to be drastically reduced in order to avoid excessively softened seams. The results of the study are presented in the form of line charts, scatter charts and tables. The ultrasonic welded seams, joined with the Medium Male Knurled wheel, exhibited surface waviness, as opposed to those joined with the Staggered Triple Stitch wheel which were smooth. It was found that, in terms of seam strength, the ultrasonic seams produced with the Single Stitch and Medium Male Knurled pattern wheels out performed those produced with the Staggered Triple Stitch wheels. The polyester/Lycra fabric was found easier to handle during the ultrasonic seaming process than the polyamide/Lycra fabric, although the strength of the ultrasonic seams in the polyester/Lycra fabric did not differ consistently from those of the polyamide/Lycra fabric. It was found that the conventional sewn seams were consistently stronger, and had a better appearance, than the ultrasonic welded seams. Although some promising results were obtained, in terms of the strength of the ultrasonic welded seams, the results overall were far too variable, inconsistent and unsatisfactory for this technique of seaming to be recommended at this stage for any of the swimwear fabrics covered. Further, more in depth, studies are required in order to gain a better understating of the effect of the various ultrasonic seaming parameters, as well as fabric parameters on ultrasonic seam strength and consistency.
- Full Text:
- Date Issued: 2018
- Authors: Tyalana, Nommiselo
- Date: 2018
- Subjects: Textile finishing , Textile finishing agents Seams (Sewing) Textile fabrics Textile fibers Textile design
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/36727 , vital:34048
- Description: Ultrasonic welding technology is a relatively new technology in apparel construction, this research forms part of a study to assess its effectiveness as a joining technology that can be used in ladies swimwear. The ultimate aim was to determine whether the ultrasonic welding joining technique could be successfully used in assembling ladies swimwear garments, comprising only synthetic fibres, namely polyester/Lycra, polyamide/Lycra, polyamide/Lycra power-net and polyamide/Lycra mesh warp knitted fabrics. These specific swimwear fabrics were selected since they comprise 100% thermoplastic synthetic fibres, considered ideal for ultrasonic welding. This study essentially compares and contrasts the performance of two seam joining techniques: namely conventional sewing and ultrasonic welding, in terms of seam strength, when used in the above mentioned four fabrics. Conventionally sewn and ultrasonically welded seams were produced, straight and curved, in both the wale and course directions of the fabrics. The conventionally sewn seams were produced using two sewing machines; namely an overlocker, also known as a mock safety sewing machine, and a cover seam machines. All conventionally sewn seams were stitched and tested under similar conditions. The ultrasonic welded seams were produced using three different wheels, a Medium Male Knurled pattern wheel, a Staggered Triple Stitch pattern wheel and a Single Stitch pattern wheel. The amplitude and speed of the welding machine, during the ultrasonic seaming, were kept constant, except when welding the polyamide/Lycra power-net and the polyamide/Lycra mesh fabrics when the pressure had to be drastically reduced in order to avoid excessively softened seams. The results of the study are presented in the form of line charts, scatter charts and tables. The ultrasonic welded seams, joined with the Medium Male Knurled wheel, exhibited surface waviness, as opposed to those joined with the Staggered Triple Stitch wheel which were smooth. It was found that, in terms of seam strength, the ultrasonic seams produced with the Single Stitch and Medium Male Knurled pattern wheels out performed those produced with the Staggered Triple Stitch wheels. The polyester/Lycra fabric was found easier to handle during the ultrasonic seaming process than the polyamide/Lycra fabric, although the strength of the ultrasonic seams in the polyester/Lycra fabric did not differ consistently from those of the polyamide/Lycra fabric. It was found that the conventional sewn seams were consistently stronger, and had a better appearance, than the ultrasonic welded seams. Although some promising results were obtained, in terms of the strength of the ultrasonic welded seams, the results overall were far too variable, inconsistent and unsatisfactory for this technique of seaming to be recommended at this stage for any of the swimwear fabrics covered. Further, more in depth, studies are required in order to gain a better understating of the effect of the various ultrasonic seaming parameters, as well as fabric parameters on ultrasonic seam strength and consistency.
- Full Text:
- Date Issued: 2018
A congestion aware ant colony optimisation-based routing and wavelength assignment algorithm for transparent flexi-grid optical burst switched networks
- Authors: Oladipo, Joshua Femi
- Date: 2018
- Subjects: Ants -- Behavior -- Mathematical models , Distributed algorithms
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/34733 , vital:33432
- Description: Optical Burst Switching (OBS) over transparent exi-grid optical networks, is considered a potential solution to the increasing pressure on backbone networks due to the increase in internet use and widespread adoption of various high bandwidth applications. Both technologies allow for more e cient usage of a networks resources. However, transmissions over exi-grid networks are more susceptible to optical impairments than transmissions made over xed-grid networks, and OBS suers from high burst loss due to contention. These issues need to be solved in order to reap the full benets of both technologies. An open issue for OBS whose solution would mitigate both issues is the Routing and Wavelength Assignment (RWA) algorithm. Ant Colony Optimisation (ACO) is a method of interest for solving the RWA problem on OBS networks. This study aims to improve on current dynamic ACO-based solutions to the Routing and Wavelength Assignment problem on transparent exi-grid Optical Burst Switched networks.
- Full Text:
- Date Issued: 2018
- Authors: Oladipo, Joshua Femi
- Date: 2018
- Subjects: Ants -- Behavior -- Mathematical models , Distributed algorithms
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/34733 , vital:33432
- Description: Optical Burst Switching (OBS) over transparent exi-grid optical networks, is considered a potential solution to the increasing pressure on backbone networks due to the increase in internet use and widespread adoption of various high bandwidth applications. Both technologies allow for more e cient usage of a networks resources. However, transmissions over exi-grid networks are more susceptible to optical impairments than transmissions made over xed-grid networks, and OBS suers from high burst loss due to contention. These issues need to be solved in order to reap the full benets of both technologies. An open issue for OBS whose solution would mitigate both issues is the Routing and Wavelength Assignment (RWA) algorithm. Ant Colony Optimisation (ACO) is a method of interest for solving the RWA problem on OBS networks. This study aims to improve on current dynamic ACO-based solutions to the Routing and Wavelength Assignment problem on transparent exi-grid Optical Burst Switched networks.
- Full Text:
- Date Issued: 2018
A framework for designing ambient assisted living services for disabled individuals
- Authors: Kyazze, Michael
- Date: 2018
- Subjects: Assistive computer technology , Computers and people with disabilities Self-help devices for people with disabilities People with disabilities -- Means of communication -- Technological innovations Communication devices for people with disabilities
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/31240 , vital:31347
- Description: Physically disabled individuals face a number of challenges when carrying out their everyday activities such as moving around, communicating with others, and their personal care. One way of overcoming these challenges is by using personal assistants. An alternative is to enable independence through assistive technology. This research aimed to investigate how physically disabled individuals experience these challenges, and how assistive technology can enable them to be more independent. In order to achieve the goal of this research, existing literature was reviewed on disability, assisted living, and interaction techniques. The literature study on disability identified some of the challenges faced by disabled individuals in their daily lives. In order to contextualize these challenges, interview studies with eighteen disabled individuals, and twelve personal assistants were carried out in Kampala, Uganda and Port Elizabeth, South Africa. The participants from both Uganda and South Africa were limited to those living in urban areas. The Ugandan participants noted that, whereas technology may assist their daily lives, their most essential needs are basic disability support aids such as wheelchairs and better long canes. This was in contrast with the South African participants, who have access to basic disability support aids. The South African participants identified their key needs as controlling an electronic environment without assistance, e.g. house lights, using a mobile phone, and using a computer without assistance. The interviews narrowed down the scope to focus on individuals with quadriplegia, specifically individuals who have limited hand use, but can comfortably speak and move their heads, and make gestures such as head shake and nod. Literature on assisted living technologies and frameworks, provided the technical foundation for the research. The literature review of interaction techniques identified a number of possible ways in which individuals with quadriplegia can interact with technology. An appropriate set of interaction techniques, namely head shake and nod, voice, and facial feature tracking were identified. Evaluations of the interaction techniques excluded head shake and nod, because of an inconsistency in detecting an individual’s head pose in different lighting conditions, when using a Microsoft Kinect. Voice and facial feature tracking using a standard computer camera were identified as the most suitable interaction techniques for this study. A framework for designing assisted living software services was developed. The framework allows disability researchers and solution developers to understand the needs of a given disability group, and design relevant solutions. To demonstrate that the proposed framework iii | P a g e addresses the main aim of this research, a prototype was developed that enables users to control smart lights (Phillips hue), a Smart TV (Samsung), and carry out basic navigation and webbrowsing on a computer. Users could interact with the software using voice and facial feature commands. A usability study was carried out with fifteen physically disabled individuals in Port Elizabeth, South Africa. The results of the evaluation study were highly positive. The successful evaluation of the prototype provided empirical evidence that the proposed framework does assist in the design of relevant and useful software services, to meet the unique needs of physically disabled individuals.
- Full Text:
- Date Issued: 2018
- Authors: Kyazze, Michael
- Date: 2018
- Subjects: Assistive computer technology , Computers and people with disabilities Self-help devices for people with disabilities People with disabilities -- Means of communication -- Technological innovations Communication devices for people with disabilities
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/31240 , vital:31347
- Description: Physically disabled individuals face a number of challenges when carrying out their everyday activities such as moving around, communicating with others, and their personal care. One way of overcoming these challenges is by using personal assistants. An alternative is to enable independence through assistive technology. This research aimed to investigate how physically disabled individuals experience these challenges, and how assistive technology can enable them to be more independent. In order to achieve the goal of this research, existing literature was reviewed on disability, assisted living, and interaction techniques. The literature study on disability identified some of the challenges faced by disabled individuals in their daily lives. In order to contextualize these challenges, interview studies with eighteen disabled individuals, and twelve personal assistants were carried out in Kampala, Uganda and Port Elizabeth, South Africa. The participants from both Uganda and South Africa were limited to those living in urban areas. The Ugandan participants noted that, whereas technology may assist their daily lives, their most essential needs are basic disability support aids such as wheelchairs and better long canes. This was in contrast with the South African participants, who have access to basic disability support aids. The South African participants identified their key needs as controlling an electronic environment without assistance, e.g. house lights, using a mobile phone, and using a computer without assistance. The interviews narrowed down the scope to focus on individuals with quadriplegia, specifically individuals who have limited hand use, but can comfortably speak and move their heads, and make gestures such as head shake and nod. Literature on assisted living technologies and frameworks, provided the technical foundation for the research. The literature review of interaction techniques identified a number of possible ways in which individuals with quadriplegia can interact with technology. An appropriate set of interaction techniques, namely head shake and nod, voice, and facial feature tracking were identified. Evaluations of the interaction techniques excluded head shake and nod, because of an inconsistency in detecting an individual’s head pose in different lighting conditions, when using a Microsoft Kinect. Voice and facial feature tracking using a standard computer camera were identified as the most suitable interaction techniques for this study. A framework for designing assisted living software services was developed. The framework allows disability researchers and solution developers to understand the needs of a given disability group, and design relevant solutions. To demonstrate that the proposed framework iii | P a g e addresses the main aim of this research, a prototype was developed that enables users to control smart lights (Phillips hue), a Smart TV (Samsung), and carry out basic navigation and webbrowsing on a computer. Users could interact with the software using voice and facial feature commands. A usability study was carried out with fifteen physically disabled individuals in Port Elizabeth, South Africa. The results of the evaluation study were highly positive. The successful evaluation of the prototype provided empirical evidence that the proposed framework does assist in the design of relevant and useful software services, to meet the unique needs of physically disabled individuals.
- Full Text:
- Date Issued: 2018
A seismic characterization of the crustal structure underlying the offshore Natal valley within the south-west Indian Ocean
- Authors: Moorcroft, David
- Date: 2018
- Subjects: Seismology , Seismology -- Kwa Zulu Natal -- Research Coasts -- Kwa Zulu Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/22387 , vital:29965
- Description: The Natal Valley is a ~1000 km long, elongated depression in the seafloor, located within the south-west Indian Ocean, between the coastline of south-east Africa and the offshore aseismic Mozambique Ridge. Knowledge of its present-day crustal structure is important to reconstruct the Gondwana supercontinent break-up history and the concurrent opening of the Indian Ocean, which started during the Jurassic, some ~180 – 150 million years ago. Major geological events relating to this supercontinent break-up including continental rifting, magmatism, the emplacement of extensive oceanic flood basalt as submarine plateaus, vertical processes associated with tectonic uplift, flexural subsidence of the margin and relative global sea-level change are recorded within the crust underlying the south-west Indian Ocean. Although these events have been well modelled, fundamental questions remain regarding the nature and tectonic structure of the crust. Today, the Natal Valley region represents a frontier for geophysical exploration. Early attempts at imaging the crust beneath the seafloor within the south-west Indian Ocean made use of now primitive seismic reflection data acquisition and processing techniques available to them at the time (1960’s - 1970’s). Considering the advancements made in marine seismic reflection imaging, these vintage datasets lacked the horizontal and vertical resolution necessary to most accurately account for and describe features of the upper crust underlying the northern Natal Valley. This study is based on the acquisition, processing and preliminary interpretation of a newly acquired, regional seismic reflection profile, Profile Mz5-007, acquired across the northernmost region of the Natal Valley during the PAMELA-Moz5 cruise in 2016. The methods of marine seismic reflection data acquisition, processing and interpretation are described. The seismic reflection data presented in this dissertation provides a regional-scaled appraisal of the upper crust underlying the northern Natal Valley for the first time. The imagery allows a comprehensive description of crustal structures and features from the very northern Natal Valley, close to the Mozambique coastline, southwards into the southern Natal Valley offshore of Durban. The findings presented here support the notion that the crust underlying the northern Natal Valley experienced roughly N-S orientated trans-tensional stresses in relation to the breakup of West Gondwana. At least two major phases of volcanism are imaged within the seismic stratigraphy. The lower-most event underlies the Limpopo Fan in the northernmost regions of the Natal Valley at a depth of 2 seconds TWT and is interpreted as a seismic expression of the upper surface of the Lower – Middle Jurassic Karoo LIP. The progressive disappearance of this horizon towards the south coincides with the emergence of a second, overlying, as yet unreported volcanic horizon, which extends southwards throughout the Natal Valley. On the basis of its regional distribution, spatial relationship with the underlying event boundary and its deformation history, this volcanic horizon is interpreted to represent a series of basaltic lava outpourings during the Lower Cretaceous, initiated in response to trans-tensional crustal deformation associated with the breakup of West Gondwana. In addition to these two major phases of flood basalt outpouring, a number of localized volcanic flows are imaged throughout the stratigraphy, most notably over the Central Terrace. In addition, at least four major unconformities are identified, all of which are well developed within the Limpopo Fan. One of these is interpreted to represent the well-developed Mid-Cretaceous hiatus in sedimentation, providing a relative seismo-stratigraphic constraint to overlying and underlying seismic units. A review of the structural elements of the crust reveals how the northern Natal Valley is partitioned into two sub-basins separated by a prominent basement high, the Central Terrace, imaged across the central portions of Profile Mz5-007. To the north of the Central Terrace, structural deformation appears largely extensional, characterized by a large (~37 km wide) asymmetrical depression directly to the north of the Central Terrace and only minor structural faulting. To the south of the Central Terrace, trans-tensional stresses associated with withdrawal of the Falkland Malvinas Plateau have deformed the upper crust into a series of apparently southwards tilted crustal blocks, producing a series of deep (3.5 s TWT) half graben-like structures, within which syn-rift fill has an apparent dip towards the south. There is evidence to suggest ongoing reactivation of these fault structures. This zone of deformation is shown to bear resemblances to the faulting mapped onshore of the Kwa-Zulu Natal coastline, providing reason to consider the two regions as a continuous zone of deformation associated with the withdrawal of the Falkland-Malvinas Plateau during the breakup of West Gondwana. Furthermore, a number of post-sedimentary intrusive features are imaged, the largest of which is the Naude Ridge; a large pinnacle-like feature which has penetrated the upper crust towards the southern limit of the profile. This feature corresponds to an abrupt change in seafloor depth and upper crustal structure, suggesting that this feature may mark the transition between subsided continental crust interpreted to underlie the northern Natal Valley to the north and oceanic crust known to underlie the southern Natal Valley to the south.
- Full Text:
- Date Issued: 2018
- Authors: Moorcroft, David
- Date: 2018
- Subjects: Seismology , Seismology -- Kwa Zulu Natal -- Research Coasts -- Kwa Zulu Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/22387 , vital:29965
- Description: The Natal Valley is a ~1000 km long, elongated depression in the seafloor, located within the south-west Indian Ocean, between the coastline of south-east Africa and the offshore aseismic Mozambique Ridge. Knowledge of its present-day crustal structure is important to reconstruct the Gondwana supercontinent break-up history and the concurrent opening of the Indian Ocean, which started during the Jurassic, some ~180 – 150 million years ago. Major geological events relating to this supercontinent break-up including continental rifting, magmatism, the emplacement of extensive oceanic flood basalt as submarine plateaus, vertical processes associated with tectonic uplift, flexural subsidence of the margin and relative global sea-level change are recorded within the crust underlying the south-west Indian Ocean. Although these events have been well modelled, fundamental questions remain regarding the nature and tectonic structure of the crust. Today, the Natal Valley region represents a frontier for geophysical exploration. Early attempts at imaging the crust beneath the seafloor within the south-west Indian Ocean made use of now primitive seismic reflection data acquisition and processing techniques available to them at the time (1960’s - 1970’s). Considering the advancements made in marine seismic reflection imaging, these vintage datasets lacked the horizontal and vertical resolution necessary to most accurately account for and describe features of the upper crust underlying the northern Natal Valley. This study is based on the acquisition, processing and preliminary interpretation of a newly acquired, regional seismic reflection profile, Profile Mz5-007, acquired across the northernmost region of the Natal Valley during the PAMELA-Moz5 cruise in 2016. The methods of marine seismic reflection data acquisition, processing and interpretation are described. The seismic reflection data presented in this dissertation provides a regional-scaled appraisal of the upper crust underlying the northern Natal Valley for the first time. The imagery allows a comprehensive description of crustal structures and features from the very northern Natal Valley, close to the Mozambique coastline, southwards into the southern Natal Valley offshore of Durban. The findings presented here support the notion that the crust underlying the northern Natal Valley experienced roughly N-S orientated trans-tensional stresses in relation to the breakup of West Gondwana. At least two major phases of volcanism are imaged within the seismic stratigraphy. The lower-most event underlies the Limpopo Fan in the northernmost regions of the Natal Valley at a depth of 2 seconds TWT and is interpreted as a seismic expression of the upper surface of the Lower – Middle Jurassic Karoo LIP. The progressive disappearance of this horizon towards the south coincides with the emergence of a second, overlying, as yet unreported volcanic horizon, which extends southwards throughout the Natal Valley. On the basis of its regional distribution, spatial relationship with the underlying event boundary and its deformation history, this volcanic horizon is interpreted to represent a series of basaltic lava outpourings during the Lower Cretaceous, initiated in response to trans-tensional crustal deformation associated with the breakup of West Gondwana. In addition to these two major phases of flood basalt outpouring, a number of localized volcanic flows are imaged throughout the stratigraphy, most notably over the Central Terrace. In addition, at least four major unconformities are identified, all of which are well developed within the Limpopo Fan. One of these is interpreted to represent the well-developed Mid-Cretaceous hiatus in sedimentation, providing a relative seismo-stratigraphic constraint to overlying and underlying seismic units. A review of the structural elements of the crust reveals how the northern Natal Valley is partitioned into two sub-basins separated by a prominent basement high, the Central Terrace, imaged across the central portions of Profile Mz5-007. To the north of the Central Terrace, structural deformation appears largely extensional, characterized by a large (~37 km wide) asymmetrical depression directly to the north of the Central Terrace and only minor structural faulting. To the south of the Central Terrace, trans-tensional stresses associated with withdrawal of the Falkland Malvinas Plateau have deformed the upper crust into a series of apparently southwards tilted crustal blocks, producing a series of deep (3.5 s TWT) half graben-like structures, within which syn-rift fill has an apparent dip towards the south. There is evidence to suggest ongoing reactivation of these fault structures. This zone of deformation is shown to bear resemblances to the faulting mapped onshore of the Kwa-Zulu Natal coastline, providing reason to consider the two regions as a continuous zone of deformation associated with the withdrawal of the Falkland-Malvinas Plateau during the breakup of West Gondwana. Furthermore, a number of post-sedimentary intrusive features are imaged, the largest of which is the Naude Ridge; a large pinnacle-like feature which has penetrated the upper crust towards the southern limit of the profile. This feature corresponds to an abrupt change in seafloor depth and upper crustal structure, suggesting that this feature may mark the transition between subsided continental crust interpreted to underlie the northern Natal Valley to the north and oceanic crust known to underlie the southern Natal Valley to the south.
- Full Text:
- Date Issued: 2018
A social media model for public participation in a South African municipality
- Authors: Fashoro, Ifeoluwapo
- Date: 2018
- Subjects: Information technology -- Social aspects -- South Africa , Social media -- South Africa Political participation -- Technological innovations -- South Africa Municipal government -- South Africa -- Citizen participation
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/29851 , vital:30786
- Description: Social media have become the preferred method of communication for individuals, organisations and even governments. These technologies have become ingrained in our everyday lives and have changed the way we communicate, collaborate are informed of recent happenings around the world. Social media websites are reported to be the most popular around the world. In the government sphere, social media is purported as a technology that will revolutionise citizen participation, service delivery and government-citizen interactions. Accordingly, governments around the world are steadily implementing social media in a bid to meet citizens’ demand for immediate and constant access to information, as well as increased opportunities to participate in government. Public participation has become an important focus area for government which could be used to effectively engage citizens and foster citizen trust. The United Nation’s E-government survey reports the presence of 125 countries on social media platforms. Despite the increased use of social media by governments, consensus among researchers is that governments need guidance on how to use social media effectively to achieve the potential benefits proposed by these technologies. Many social media adoptions by governments have been deemed as experimental; no formal action plan was designed, and many government employees are expected to learn social media use on-the-job. The aim of this research was to investigate and propose a social media model for public participation to leverage the opportunities provided by social media and present an effective and structured approach towards public participation. The research was designed as a mixed methods research using a case study based in the Eastern Cape Province of South Africa. The research involved a survey of citizens in the selected municipality based on the Uses and Gratifications Theory, interviews with employees responsible for social media in said municipality and a contents analysis of the existing social media pages of the municipality. The model was developed from the findings of the survey, interviews and existing literature. The implementation of the model was done in the Nelson Mandela Bay Municipality. The municipality appointed a social media champion responsible for obtaining support from top management and politicians within the municipality. Additional staff were added to the social media team and formal social media training was provided to the team. An official social media strategy was drafted and at the time of writing, needed to be approved by top management. The proposed model was operationalised within the Nelson Mandela Bay Municipality. This research makes several contributions to the E-government and social media fields in South Africa. The major contribution is the provision of guidance for South African municipalities to implement and use social media in an effective manner to achieve public participation. The research provided a phased approach to social media implementation that eliminates ad hoc experimentation and ensures the municipality’s social media activities are effective. The development of the model was based on the characteristics of the municipality and its citizens derived from the interviews and survey carried out. There are five phases in the model; Initialisation, Setup, Organisation, Institutionalisation and Maintenance. The model can be thought of as a guideline, and as such municipalities should adapt the implementation of the model to fit their organisational characteristics. The social media model will assist municipalities to determine the resources, tools and tactics to enable them to implement social media effectively, which will result in an improved engagement and participation process with citizens, and thereby foster trust.
- Full Text:
- Date Issued: 2018
- Authors: Fashoro, Ifeoluwapo
- Date: 2018
- Subjects: Information technology -- Social aspects -- South Africa , Social media -- South Africa Political participation -- Technological innovations -- South Africa Municipal government -- South Africa -- Citizen participation
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/29851 , vital:30786
- Description: Social media have become the preferred method of communication for individuals, organisations and even governments. These technologies have become ingrained in our everyday lives and have changed the way we communicate, collaborate are informed of recent happenings around the world. Social media websites are reported to be the most popular around the world. In the government sphere, social media is purported as a technology that will revolutionise citizen participation, service delivery and government-citizen interactions. Accordingly, governments around the world are steadily implementing social media in a bid to meet citizens’ demand for immediate and constant access to information, as well as increased opportunities to participate in government. Public participation has become an important focus area for government which could be used to effectively engage citizens and foster citizen trust. The United Nation’s E-government survey reports the presence of 125 countries on social media platforms. Despite the increased use of social media by governments, consensus among researchers is that governments need guidance on how to use social media effectively to achieve the potential benefits proposed by these technologies. Many social media adoptions by governments have been deemed as experimental; no formal action plan was designed, and many government employees are expected to learn social media use on-the-job. The aim of this research was to investigate and propose a social media model for public participation to leverage the opportunities provided by social media and present an effective and structured approach towards public participation. The research was designed as a mixed methods research using a case study based in the Eastern Cape Province of South Africa. The research involved a survey of citizens in the selected municipality based on the Uses and Gratifications Theory, interviews with employees responsible for social media in said municipality and a contents analysis of the existing social media pages of the municipality. The model was developed from the findings of the survey, interviews and existing literature. The implementation of the model was done in the Nelson Mandela Bay Municipality. The municipality appointed a social media champion responsible for obtaining support from top management and politicians within the municipality. Additional staff were added to the social media team and formal social media training was provided to the team. An official social media strategy was drafted and at the time of writing, needed to be approved by top management. The proposed model was operationalised within the Nelson Mandela Bay Municipality. This research makes several contributions to the E-government and social media fields in South Africa. The major contribution is the provision of guidance for South African municipalities to implement and use social media in an effective manner to achieve public participation. The research provided a phased approach to social media implementation that eliminates ad hoc experimentation and ensures the municipality’s social media activities are effective. The development of the model was based on the characteristics of the municipality and its citizens derived from the interviews and survey carried out. There are five phases in the model; Initialisation, Setup, Organisation, Institutionalisation and Maintenance. The model can be thought of as a guideline, and as such municipalities should adapt the implementation of the model to fit their organisational characteristics. The social media model will assist municipalities to determine the resources, tools and tactics to enable them to implement social media effectively, which will result in an improved engagement and participation process with citizens, and thereby foster trust.
- Full Text:
- Date Issued: 2018
Advanced high speed data and clock transmission over optical fibre for square kilometre telescope array
- Authors: Isoe, George Mosoti
- Date: 2018
- Subjects: Very large array telescopes -- South Africa , Semiconductor lasers Optical communications Optical amplifiers
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/30375 , vital:30935
- Description: There is an ever present need from Internet users for more bandwidth. This is manifested by continuous increase in bandwidth demanding applications such as 5G wireless, new end user consumer links like thunderbolt, video conferencing, high definition video-on-demand transmitted over the Internet and massive data transfers required with and within data centres for backup, storage and data processing in cloud computing. Fibre optic communications technologies are playing a pivotal role in communication, being a major enabling technology in our increasingly Internet-centric society. As network services continue to become more dynamic and diverse, Internet service providers are faced with a challenge of cost reduction in the transmission network, power and spectral efficiency as well as scalability of the optical network infrastructure to support incremental expansions and virtual machines. Intelligent design of terrestrial optical networks to allow for simultaneous signal transmission through shared network infrastructure, and the use of low cost, power efficient, high bandwidth transmitters such as vertical surface emitting lasers (VCSELs) as well as exploitation of spectral efficient in-complex advanced modulation formats is a viable approach to this situation. In this study, techniques for spectral efficiency upgrade and simultaneous transmission of data signal, reference frequency (RF) clock signal and pulse-per-second (PPS) over shared infrastructure have experimentally been optimized in a laboratory environment for adoption in next-generation telescope array networks such as the Square Kilometre Array (SKA), time keeping systems such as banking systems, Coordinated Universal Time(UTC) timing and Global Positioning Systems (GPS), as well as high capacity spectral efficient short reach optical fibre networks such as data centres. This work starts by experimentally optimizing VCSEL technology for simultaneous transmission of 10 Gbps data and 1.712 GHz RF clock signal over a single G. 655 optical fibre of length 24.75 Km at different channel spacing and different propagation direction for implementation in a cost effective next-generation telescope array network. The wavelength tuneability property of VCSEL transmitters allows for wavelength adjustment, a key requirement for simultaneous data and RF clock signal transmission over a single optical fibre. A receiver sensitivity of -19.19 dBm was experimentally achieved at back-to-back analysis. A 24.75 Km of simultaneous data and RF clock signal transmission performed at 0.4 nm channel spacing introduced a transmission penalty of 1.07 dB and 1.63 dB for counter and co-propagation scheme respectively. This work mainly utilized direct modulation and direct detection using a positive intrinsic negative (PIN) due to its simplicity and cost effectiveness. A novel modulation technique for simultaneous data and polarization-based pulse-per-second timing clock signal transmission using a single VCSEL carrier is experimentally demonstrated. Two signal types, a directly modulated 10 Gbps data signal and a polarization-based pulse per second (PPS) clock signal are modulated onto a single mode 10 GHz bandwidth VCSEL carrier at 1310 nm. Spectral efficiency is maximized by exploiting the inherent orthogonal polarization switching of the xiv VCSEL with changing bias in transmission of the PPS signal. A 10 Gbps VCSEL transmission with PPS over 11 Km of G.652 fibre introduced a transmission penalty of 0.52 dB. The contribution of PPS clock signal to this penalty was found to be 0.08 dB. A technique for simultaneous directly modulated data and phase modulated reference clock signal transmission over a signal channel in wavelength division multiplexing (WDM) solutions is experimentally demonstrated. This is to prepare solutions to the ever-increasing demand over gigabit/s, terabit/s and gigahertz capacities in WDM-based terrestrial optical fibre transmission systems such as telescope array networks. a total capacity of 30 Gbps (310 Gbps) data and 12 GHz ( 4 3 GHz) reference clock signal are multiplexed at a channel spacing of 100 GHz and simultaneously transmitted over a single mode G.655 fibre of length 24.73 Km. The recovery of the phase modulated RF clock signal using a differential delay line interferometry technique is experimentally demonstrated. A 625 Gbps (2525 Gbps) DWDM data transmission system is further implemented in simulation by multiplexing 25 channels at 25 Gbps per channel using 50 GHz channel spacing. A four level pulse amplitude modulation (4-PAM) data modulation format employing VCSELs is experimentally demonstrated for adoption in high bitrate networks such as big data science projects and data centre networks. 4-PAM offers a good trade-off between complexity, efficiency, reach, and sensitivity. A software defined digital signal processing (DSP) receiver is designed and implemented in MATLAB to recover the transmitted 4-PAM data signal cost effectively without the necessity of costly receiver hardware. A novel technique for maximizing carrier spectral efficiency through simultaneous 20 Gbps 4-PAM data and phase modulated 2 GHz RF clock signal transmission on a single mode 10 GHz bandwidth VCSEL carrier at 1310 nm is experimentally demonstrated for the first time to the best of our knowledge. Data transmission and clock stability performance of the designed high spectral efficient VCSEL-based link network is evaluated through BER curve plots, phase noise measurements and Allan variance analysis respectively. VCSEL-based Raman amplification is experimentally demonstrated as a viable approach for RF clock signal distribution in extended reach astronomical telescope array networks and other extended reach terrestrial optical fibre network application. This is achieved by adopting two pumping techniques namely forward pumping and backward pumping. A maximum on off gain of 5.7 dB and 1.5 dB was experimentally attained for forward pumping and backward pumping at 24 dBm pump power respectively, while a maximum 100.8 Km fibre transmission achieved experimentally. In summary, this study has successfully demonstrated in-complex, spectral efficient, low cost and power efficient simultaneous data signal, reference frequency (RF) clock signal and pulse-per-second (PPS) transmission techniques over shared network infrastructure. Simultaneous transmission of data, RF clock and PPS timing signal is relevant in nextgeneration telescope array networks such as the Square Kilometre Array (SKA), time keeping systems such as banking systems, Coordinated Universal Time (UTC) timing and Global Positioning Systems (GPS), as well as high capacity spectral efficient short reach optical fibre networks such as data centres.
- Full Text:
- Date Issued: 2018
- Authors: Isoe, George Mosoti
- Date: 2018
- Subjects: Very large array telescopes -- South Africa , Semiconductor lasers Optical communications Optical amplifiers
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/30375 , vital:30935
- Description: There is an ever present need from Internet users for more bandwidth. This is manifested by continuous increase in bandwidth demanding applications such as 5G wireless, new end user consumer links like thunderbolt, video conferencing, high definition video-on-demand transmitted over the Internet and massive data transfers required with and within data centres for backup, storage and data processing in cloud computing. Fibre optic communications technologies are playing a pivotal role in communication, being a major enabling technology in our increasingly Internet-centric society. As network services continue to become more dynamic and diverse, Internet service providers are faced with a challenge of cost reduction in the transmission network, power and spectral efficiency as well as scalability of the optical network infrastructure to support incremental expansions and virtual machines. Intelligent design of terrestrial optical networks to allow for simultaneous signal transmission through shared network infrastructure, and the use of low cost, power efficient, high bandwidth transmitters such as vertical surface emitting lasers (VCSELs) as well as exploitation of spectral efficient in-complex advanced modulation formats is a viable approach to this situation. In this study, techniques for spectral efficiency upgrade and simultaneous transmission of data signal, reference frequency (RF) clock signal and pulse-per-second (PPS) over shared infrastructure have experimentally been optimized in a laboratory environment for adoption in next-generation telescope array networks such as the Square Kilometre Array (SKA), time keeping systems such as banking systems, Coordinated Universal Time(UTC) timing and Global Positioning Systems (GPS), as well as high capacity spectral efficient short reach optical fibre networks such as data centres. This work starts by experimentally optimizing VCSEL technology for simultaneous transmission of 10 Gbps data and 1.712 GHz RF clock signal over a single G. 655 optical fibre of length 24.75 Km at different channel spacing and different propagation direction for implementation in a cost effective next-generation telescope array network. The wavelength tuneability property of VCSEL transmitters allows for wavelength adjustment, a key requirement for simultaneous data and RF clock signal transmission over a single optical fibre. A receiver sensitivity of -19.19 dBm was experimentally achieved at back-to-back analysis. A 24.75 Km of simultaneous data and RF clock signal transmission performed at 0.4 nm channel spacing introduced a transmission penalty of 1.07 dB and 1.63 dB for counter and co-propagation scheme respectively. This work mainly utilized direct modulation and direct detection using a positive intrinsic negative (PIN) due to its simplicity and cost effectiveness. A novel modulation technique for simultaneous data and polarization-based pulse-per-second timing clock signal transmission using a single VCSEL carrier is experimentally demonstrated. Two signal types, a directly modulated 10 Gbps data signal and a polarization-based pulse per second (PPS) clock signal are modulated onto a single mode 10 GHz bandwidth VCSEL carrier at 1310 nm. Spectral efficiency is maximized by exploiting the inherent orthogonal polarization switching of the xiv VCSEL with changing bias in transmission of the PPS signal. A 10 Gbps VCSEL transmission with PPS over 11 Km of G.652 fibre introduced a transmission penalty of 0.52 dB. The contribution of PPS clock signal to this penalty was found to be 0.08 dB. A technique for simultaneous directly modulated data and phase modulated reference clock signal transmission over a signal channel in wavelength division multiplexing (WDM) solutions is experimentally demonstrated. This is to prepare solutions to the ever-increasing demand over gigabit/s, terabit/s and gigahertz capacities in WDM-based terrestrial optical fibre transmission systems such as telescope array networks. a total capacity of 30 Gbps (310 Gbps) data and 12 GHz ( 4 3 GHz) reference clock signal are multiplexed at a channel spacing of 100 GHz and simultaneously transmitted over a single mode G.655 fibre of length 24.73 Km. The recovery of the phase modulated RF clock signal using a differential delay line interferometry technique is experimentally demonstrated. A 625 Gbps (2525 Gbps) DWDM data transmission system is further implemented in simulation by multiplexing 25 channels at 25 Gbps per channel using 50 GHz channel spacing. A four level pulse amplitude modulation (4-PAM) data modulation format employing VCSELs is experimentally demonstrated for adoption in high bitrate networks such as big data science projects and data centre networks. 4-PAM offers a good trade-off between complexity, efficiency, reach, and sensitivity. A software defined digital signal processing (DSP) receiver is designed and implemented in MATLAB to recover the transmitted 4-PAM data signal cost effectively without the necessity of costly receiver hardware. A novel technique for maximizing carrier spectral efficiency through simultaneous 20 Gbps 4-PAM data and phase modulated 2 GHz RF clock signal transmission on a single mode 10 GHz bandwidth VCSEL carrier at 1310 nm is experimentally demonstrated for the first time to the best of our knowledge. Data transmission and clock stability performance of the designed high spectral efficient VCSEL-based link network is evaluated through BER curve plots, phase noise measurements and Allan variance analysis respectively. VCSEL-based Raman amplification is experimentally demonstrated as a viable approach for RF clock signal distribution in extended reach astronomical telescope array networks and other extended reach terrestrial optical fibre network application. This is achieved by adopting two pumping techniques namely forward pumping and backward pumping. A maximum on off gain of 5.7 dB and 1.5 dB was experimentally attained for forward pumping and backward pumping at 24 dBm pump power respectively, while a maximum 100.8 Km fibre transmission achieved experimentally. In summary, this study has successfully demonstrated in-complex, spectral efficient, low cost and power efficient simultaneous data signal, reference frequency (RF) clock signal and pulse-per-second (PPS) transmission techniques over shared network infrastructure. Simultaneous transmission of data, RF clock and PPS timing signal is relevant in nextgeneration telescope array networks such as the Square Kilometre Array (SKA), time keeping systems such as banking systems, Coordinated Universal Time (UTC) timing and Global Positioning Systems (GPS), as well as high capacity spectral efficient short reach optical fibre networks such as data centres.
- Full Text:
- Date Issued: 2018
An appraisal of warm temperate mangrove estuaries as food patches using zooplankton and RNA: DNA ratios of Gilchristella aestuaria larvae as indicators
- Authors: Bornman, Eugin
- Date: 2018
- Subjects: Mangrove swamps Fishes -- Larvae , Mangrove ecology , Zooplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17908 , vital:28481
- Description: Mangrove habitats are considered as the ideal fish nursery as they are known to increase the growth and survival of juvenile fishes by providing enhanced food availability and protection. However, most studies have focused on tropical mangroves with a few recent warm temperate studies finding conflicting results. Furthermore, the nursery value of South African mangroves to fishes remain understudied in subtropical areas, while warm temperate mangroves are yet to be evaluated. This study aimed to assess whether mangrove presence leads to any advantage to the larvae of an important estuarine resident fish species, Gilchristella aestuaria, by comparing the food patch quality of South African warm temperate mangrove and non-mangrove estuaries. Results indicate that larvae fed primarily on the dominant prey species, Pseudodiaptomus hessei, Paracrtia longipatella, and Acartiella natalensis. However, postflexion larvae consumed more of the larger species, P. hessei, within the two mangrove estuaries (16.09 %V in Nahoon and 13.79 %V in Xhora) than the two nonmangrove estuaries (12.20 %V in Gonubie and 7.05 %V in Qora), despite other prey species occurring at similar densities. Results indicate that mangrove habitats acted as sediment sinks, slightly reducing the turbidity of these estuaries which resulted in postflexion larvae actively selecting larger, more nutritious prey, which in turn, significantly increased their individual instantaneous growth rates (0.11 ± 0.21 Gi) when compared to postflexion larvae in non-mangrove estuaries (0.09 ± 0.12 Gi). This study found that mangrove presence was significantly related to postflexion larval densities when coupled with abiotic (such as temperature and turbidity) and biotic factors (such as predator-prey interactions). Understanding the spatial and temporal dynamics, predator-prey interactions as well as the growth and survival of G. aestuaria is particularly important as they are key zooplanktivores that are prey to other species in estuarine food webs.
- Full Text:
- Date Issued: 2018
- Authors: Bornman, Eugin
- Date: 2018
- Subjects: Mangrove swamps Fishes -- Larvae , Mangrove ecology , Zooplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17908 , vital:28481
- Description: Mangrove habitats are considered as the ideal fish nursery as they are known to increase the growth and survival of juvenile fishes by providing enhanced food availability and protection. However, most studies have focused on tropical mangroves with a few recent warm temperate studies finding conflicting results. Furthermore, the nursery value of South African mangroves to fishes remain understudied in subtropical areas, while warm temperate mangroves are yet to be evaluated. This study aimed to assess whether mangrove presence leads to any advantage to the larvae of an important estuarine resident fish species, Gilchristella aestuaria, by comparing the food patch quality of South African warm temperate mangrove and non-mangrove estuaries. Results indicate that larvae fed primarily on the dominant prey species, Pseudodiaptomus hessei, Paracrtia longipatella, and Acartiella natalensis. However, postflexion larvae consumed more of the larger species, P. hessei, within the two mangrove estuaries (16.09 %V in Nahoon and 13.79 %V in Xhora) than the two nonmangrove estuaries (12.20 %V in Gonubie and 7.05 %V in Qora), despite other prey species occurring at similar densities. Results indicate that mangrove habitats acted as sediment sinks, slightly reducing the turbidity of these estuaries which resulted in postflexion larvae actively selecting larger, more nutritious prey, which in turn, significantly increased their individual instantaneous growth rates (0.11 ± 0.21 Gi) when compared to postflexion larvae in non-mangrove estuaries (0.09 ± 0.12 Gi). This study found that mangrove presence was significantly related to postflexion larval densities when coupled with abiotic (such as temperature and turbidity) and biotic factors (such as predator-prey interactions). Understanding the spatial and temporal dynamics, predator-prey interactions as well as the growth and survival of G. aestuaria is particularly important as they are key zooplanktivores that are prey to other species in estuarine food webs.
- Full Text:
- Date Issued: 2018
An investigation of the combustion kinetics of coal-microalgae composite
- Ejesieme, Obialo Vitus, Dugmore, Gary
- Authors: Ejesieme, Obialo Vitus , Dugmore, Gary
- Date: 2018
- Subjects: Microalgae -- Biotechnology , Biomass energy -- South Africa Coal -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/34777 , vital:33447
- Description: Coal mining and handling generate sizeable quantities of ultra-fine coal particles which are heaped as discard material. Use of the ultra-fine coal for co-firing with microalgae biomass appears to be a promising option that would improve combustion of the discard. There is no available traditional biomass binder that can be used to agglomerate, reclaim, and co-fire the discard ultra-fine coal to generate heat. In a recent research, microalgae biomass was identified as an effective natural binder for discard ultra-fine coal. Biomass is a renewable resource, and many have been co-fired on a large scale except microalgae biomass. Researchers have studied co-firing of dry mixed coal-microalgae, however, the kinetics of a wet mix of microalgae biomass and ultra-fine coal, “Coalgae®” patented recently by the Nelson Mandela University needs to be explored. The study aimed at investigating in some detail the oxidation mechanism of coal-microalgae composites. The objective is to understand the impact of microalgae on the kinetic properties of coal which will inform on the application of “Coalgae®”. It involves correlating the small and large-scale combustion properties that will establish the co-firing option on an industrial scenario. The goal is to utilize all grades of discard ultra-fine resource using microalgae biomass as binder and a renewable component which enhances the combustion of coal to supply heat and electricity. The use of microalgae for fuel preparation and upgrading is on the increase due to its high growth potential, reactivity, and ability to store energy more than other biomasses. This research hypothesized that blending of discard ultra-fine coal with live microalgae biomass would improve the kinetic properties of the coal more than expected from linear combination of the dry materials. Thermogravimetric combustion of “Coalgae®” was studied under non-isothermal conditions from 40 °C to 900°C at a heating rate of 15 °C/min and air flow rate of 20 ml/min. The thermogravimetric combustion properties i.e. small-scale was related to the large-scale, John Thompson’s fixed-bed reactor under the above condition. Thermal profiles were transformed into a differential function to reveal overlapped combustion events. The Coat-Redferns kinetic model was applied on the non-de-Ejesieme, O.V. PhD Chemistry (Research), Nelson Mandela Univ. Email: ejevit@yahoo.com , s211266744@live.nmmu.ac.za convoluted reactions set to obtain some of kinetic parameters. The Fraser-Suzuki equation was used to de-convolute the overlapped combustion. Then, rate law combined with Arrhenius equation was used to derive the activation energy E a and pre-exponential factor A, while the integral form of solid states reaction model, g (∝) was applied to deduce the oxidation mechanism. The composite formed a strong and partly renewable blend under controlled temperature conditions, unlike assorted dried biomass mixed with coal. Microalgae biomass upgraded the fuel and kinetics properties of ultra-fine coal more than what was expected from a linear combination. It released heat that promoted the oxidation mechanism of the discard coal. The main effect is that the “Coalgae®” is significantly (p = 0.0570) more reactive than the coal. The co-firing approach is partly renewable and contributes to the utilization of high and low-quality available discard ultra-fine coal. It advances the combustion of coal resources and reduces carbon dioxide, CO2 emission attributed to global warming as well as preserves the natural biomass sources. The combustion of “Coalgae® “will improve economy, environment, and health, heat, and electricity supply to the society.
- Full Text:
- Date Issued: 2018
- Authors: Ejesieme, Obialo Vitus , Dugmore, Gary
- Date: 2018
- Subjects: Microalgae -- Biotechnology , Biomass energy -- South Africa Coal -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/34777 , vital:33447
- Description: Coal mining and handling generate sizeable quantities of ultra-fine coal particles which are heaped as discard material. Use of the ultra-fine coal for co-firing with microalgae biomass appears to be a promising option that would improve combustion of the discard. There is no available traditional biomass binder that can be used to agglomerate, reclaim, and co-fire the discard ultra-fine coal to generate heat. In a recent research, microalgae biomass was identified as an effective natural binder for discard ultra-fine coal. Biomass is a renewable resource, and many have been co-fired on a large scale except microalgae biomass. Researchers have studied co-firing of dry mixed coal-microalgae, however, the kinetics of a wet mix of microalgae biomass and ultra-fine coal, “Coalgae®” patented recently by the Nelson Mandela University needs to be explored. The study aimed at investigating in some detail the oxidation mechanism of coal-microalgae composites. The objective is to understand the impact of microalgae on the kinetic properties of coal which will inform on the application of “Coalgae®”. It involves correlating the small and large-scale combustion properties that will establish the co-firing option on an industrial scenario. The goal is to utilize all grades of discard ultra-fine resource using microalgae biomass as binder and a renewable component which enhances the combustion of coal to supply heat and electricity. The use of microalgae for fuel preparation and upgrading is on the increase due to its high growth potential, reactivity, and ability to store energy more than other biomasses. This research hypothesized that blending of discard ultra-fine coal with live microalgae biomass would improve the kinetic properties of the coal more than expected from linear combination of the dry materials. Thermogravimetric combustion of “Coalgae®” was studied under non-isothermal conditions from 40 °C to 900°C at a heating rate of 15 °C/min and air flow rate of 20 ml/min. The thermogravimetric combustion properties i.e. small-scale was related to the large-scale, John Thompson’s fixed-bed reactor under the above condition. Thermal profiles were transformed into a differential function to reveal overlapped combustion events. The Coat-Redferns kinetic model was applied on the non-de-Ejesieme, O.V. PhD Chemistry (Research), Nelson Mandela Univ. Email: ejevit@yahoo.com , s211266744@live.nmmu.ac.za convoluted reactions set to obtain some of kinetic parameters. The Fraser-Suzuki equation was used to de-convolute the overlapped combustion. Then, rate law combined with Arrhenius equation was used to derive the activation energy E a and pre-exponential factor A, while the integral form of solid states reaction model, g (∝) was applied to deduce the oxidation mechanism. The composite formed a strong and partly renewable blend under controlled temperature conditions, unlike assorted dried biomass mixed with coal. Microalgae biomass upgraded the fuel and kinetics properties of ultra-fine coal more than what was expected from a linear combination. It released heat that promoted the oxidation mechanism of the discard coal. The main effect is that the “Coalgae®” is significantly (p = 0.0570) more reactive than the coal. The co-firing approach is partly renewable and contributes to the utilization of high and low-quality available discard ultra-fine coal. It advances the combustion of coal resources and reduces carbon dioxide, CO2 emission attributed to global warming as well as preserves the natural biomass sources. The combustion of “Coalgae® “will improve economy, environment, and health, heat, and electricity supply to the society.
- Full Text:
- Date Issued: 2018
An investigation of the movement of sediment through the Noordhoek headland bypass dunefield system at Cape Recife, South Africa
- Authors: Goosen, Gerrit Pieter
- Date: 2018
- Subjects: Sedimentation and deposition , Fluvial geomorphology Geomorphology Sand dunes -- Environmental aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/22101 , vital:29840
- Description: A detailed study of the movement of sediment across the Cape Recife headland via the Noordhoek headland bypass dunefield was conducted. The Noordhoek HBD is important because of the environmental impacts anticipated on the sewerage works, settling ponds, and road to the Cape Recife lighthouse situated in the migration path of the dunefield to the ENE of its active boundary. The primary objective of the study was to investigate the movement of sediment in and through the Noordhoek HBD system. This study has provided sand transportation and dune migration rates by making use of various dune monitoring techniques. In doing so, useful predictions have been made as to when the settling ponds and the road to the lighthouse will be inundated. An indication has also been given as to how much sand moves through the system. Some key findings from this research included: the net migration direction of the Noordhoek HBD was found to be towards the east-north-east; the wind environment at the study area was classified as a high energy wind environment; this study has highlighted that various climatic factors such as rainfall and temperature influence the movement of sediment through dune systems; sediment transport was found to be directly related to the source area and topography; the central zone of the dunefield proved to be a groundwater recharge zone for the western and eastern zones; and the leading lobes of the migrating Noordhoek dunefield are gradually covering stabilising vegetation by pulses of dunes moving through. In this study, it was calculated that presently a total volume of about 26 000 m3 of sand is migrating into the vegetation at the leading lobes annually. If the Noordhoek HBD is left to run its natural course and migrate across the Cape Recife headland to the downwind beach, an approximate volume of 26 000 m3 of sand could be supplied to the downwind beach by this system. In doing so, it has the potential to play a role in replenishing some of the sand to Port Elizabeth’s eroded southern beaches via a natural process.
- Full Text:
- Date Issued: 2018
- Authors: Goosen, Gerrit Pieter
- Date: 2018
- Subjects: Sedimentation and deposition , Fluvial geomorphology Geomorphology Sand dunes -- Environmental aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/22101 , vital:29840
- Description: A detailed study of the movement of sediment across the Cape Recife headland via the Noordhoek headland bypass dunefield was conducted. The Noordhoek HBD is important because of the environmental impacts anticipated on the sewerage works, settling ponds, and road to the Cape Recife lighthouse situated in the migration path of the dunefield to the ENE of its active boundary. The primary objective of the study was to investigate the movement of sediment in and through the Noordhoek HBD system. This study has provided sand transportation and dune migration rates by making use of various dune monitoring techniques. In doing so, useful predictions have been made as to when the settling ponds and the road to the lighthouse will be inundated. An indication has also been given as to how much sand moves through the system. Some key findings from this research included: the net migration direction of the Noordhoek HBD was found to be towards the east-north-east; the wind environment at the study area was classified as a high energy wind environment; this study has highlighted that various climatic factors such as rainfall and temperature influence the movement of sediment through dune systems; sediment transport was found to be directly related to the source area and topography; the central zone of the dunefield proved to be a groundwater recharge zone for the western and eastern zones; and the leading lobes of the migrating Noordhoek dunefield are gradually covering stabilising vegetation by pulses of dunes moving through. In this study, it was calculated that presently a total volume of about 26 000 m3 of sand is migrating into the vegetation at the leading lobes annually. If the Noordhoek HBD is left to run its natural course and migrate across the Cape Recife headland to the downwind beach, an approximate volume of 26 000 m3 of sand could be supplied to the downwind beach by this system. In doing so, it has the potential to play a role in replenishing some of the sand to Port Elizabeth’s eroded southern beaches via a natural process.
- Full Text:
- Date Issued: 2018
AP-MOVPE growth and characterisation of GaSb/GaAs quantum dots
- Authors: Tile, Ngcali
- Date: 2018
- Subjects: Quantum theory , Quantum electronics Quantum dots Semiconductors
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/36716 , vital:34047
- Description: GaSb/GaAs quantum dots (QD) were grown by atmospheric pressure (AP) metal-organic vapour phase epitaxy (MOVPE) using triethylgallium (TEGa), tertiarybutylarsine (tBAs) and trimethylantimony (TMSb) as gallium (Ga), arsenic (As) and (Sb) sources, respectively. The effect of AP-MOVPE growth parameters on the formation of GaSb QD structures on GaAs was studied. The formation of small, coherent GaSb dots on GaAs improved with decreasing V/III ratios, which were controlled through changing either the TMSb/TEGa ratio at a constant growth temperature or changing the growth temperature at a constant TMSb/TEGa ratio. The maximum effective V/III ratio for dot formation was 0.175. The dot density was more sensitive to growth time than to source mole fraction in the reactor, since time determines the amount of deposited material. The dot density increased with increasing growth time, while the shape and size of the dots were more sensitive to the source vapour mole fraction, which controls the growth rate. Lower mole fractions resulted in smaller sized dots with a more uniform distribution compared to higher mole fractions. Dome-shaped dots with densities as high as 4×1010 cm-2, average base length of 35 nm and average height of 5 nm were achieved. Capping of GaSb QDs at high temperatures caused flattening and the formation of a thin, inhomogeneous GaSb layer inside GaAs. No obvious QD photoluminescence (PL) peak was detected for these samples. A two stage process for capping the dots (involving growth of a low temperature GaAs cap, followed by a high temperature cap) led to the retention of the dot-like features in/on a wetting layer (WL) of GaSb and distinct PL peaks for both the QDs and WL. An increase in excitation power during PL measurements for this particular sample caused the QD and WL peaks to shift to higher energies. This is attributed to electrostatic band bending, leading to triangular potential wells, typical for type II band alignment between GaAs and strained GaSb. Variable temperature PL measurements showed the decrease in the intensity of the WL peak to be faster than that of the QD peak as the measurement temperature increased. A detailed high resolution transmission electron microscopy analysis was performed to study the morphology and chemical interaction between GaAs and GaSb regions for capped GaSb/GaAs QDs. The capped dots had dimensions similar to those of uncapped dots and had a higher concentration of Sb at their center, with the periphery being intermixed with GaAs. Measurement of lattice strain performed inside these dots revealed the strain to be distributed inhomogenously throughout the dot area. The effect of GaAs host matrix on excitonic behaviour in AP-MOVPE grown GaSb/GaAs quantum dots was investigated. Room temperature (RT) PL emission was achieved from a single layer of quantum dots by controlling the GaAs host matrix growth temperature. These samples were prepared using a GaSb dot growth temperature of 530 °C, followed by growth of a thin GaAs ‘cold’ cap, before depositing the final part of the GaAs capping layer at either 550 °C, 600 °C or 650 °C. PL measurements at 10 K revealed QD emission peaks for all the samples at around 1.1 eV. However, variable temperature PL revealed different thermal quenching rates of the emission, with the rates of quenching reduced with increasing GaAs growth temperature. This was ascribed to reduced defect densities in GaAs grown at higher temperature, which resulted in QD emission even at RT. This RT emission peaked at approximately 1 eV. The hole localisation energy determined for these samples at RT was approximately 470 meV.
- Full Text:
- Date Issued: 2018
- Authors: Tile, Ngcali
- Date: 2018
- Subjects: Quantum theory , Quantum electronics Quantum dots Semiconductors
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/36716 , vital:34047
- Description: GaSb/GaAs quantum dots (QD) were grown by atmospheric pressure (AP) metal-organic vapour phase epitaxy (MOVPE) using triethylgallium (TEGa), tertiarybutylarsine (tBAs) and trimethylantimony (TMSb) as gallium (Ga), arsenic (As) and (Sb) sources, respectively. The effect of AP-MOVPE growth parameters on the formation of GaSb QD structures on GaAs was studied. The formation of small, coherent GaSb dots on GaAs improved with decreasing V/III ratios, which were controlled through changing either the TMSb/TEGa ratio at a constant growth temperature or changing the growth temperature at a constant TMSb/TEGa ratio. The maximum effective V/III ratio for dot formation was 0.175. The dot density was more sensitive to growth time than to source mole fraction in the reactor, since time determines the amount of deposited material. The dot density increased with increasing growth time, while the shape and size of the dots were more sensitive to the source vapour mole fraction, which controls the growth rate. Lower mole fractions resulted in smaller sized dots with a more uniform distribution compared to higher mole fractions. Dome-shaped dots with densities as high as 4×1010 cm-2, average base length of 35 nm and average height of 5 nm were achieved. Capping of GaSb QDs at high temperatures caused flattening and the formation of a thin, inhomogeneous GaSb layer inside GaAs. No obvious QD photoluminescence (PL) peak was detected for these samples. A two stage process for capping the dots (involving growth of a low temperature GaAs cap, followed by a high temperature cap) led to the retention of the dot-like features in/on a wetting layer (WL) of GaSb and distinct PL peaks for both the QDs and WL. An increase in excitation power during PL measurements for this particular sample caused the QD and WL peaks to shift to higher energies. This is attributed to electrostatic band bending, leading to triangular potential wells, typical for type II band alignment between GaAs and strained GaSb. Variable temperature PL measurements showed the decrease in the intensity of the WL peak to be faster than that of the QD peak as the measurement temperature increased. A detailed high resolution transmission electron microscopy analysis was performed to study the morphology and chemical interaction between GaAs and GaSb regions for capped GaSb/GaAs QDs. The capped dots had dimensions similar to those of uncapped dots and had a higher concentration of Sb at their center, with the periphery being intermixed with GaAs. Measurement of lattice strain performed inside these dots revealed the strain to be distributed inhomogenously throughout the dot area. The effect of GaAs host matrix on excitonic behaviour in AP-MOVPE grown GaSb/GaAs quantum dots was investigated. Room temperature (RT) PL emission was achieved from a single layer of quantum dots by controlling the GaAs host matrix growth temperature. These samples were prepared using a GaSb dot growth temperature of 530 °C, followed by growth of a thin GaAs ‘cold’ cap, before depositing the final part of the GaAs capping layer at either 550 °C, 600 °C or 650 °C. PL measurements at 10 K revealed QD emission peaks for all the samples at around 1.1 eV. However, variable temperature PL revealed different thermal quenching rates of the emission, with the rates of quenching reduced with increasing GaAs growth temperature. This was ascribed to reduced defect densities in GaAs grown at higher temperature, which resulted in QD emission even at RT. This RT emission peaked at approximately 1 eV. The hole localisation energy determined for these samples at RT was approximately 470 meV.
- Full Text:
- Date Issued: 2018
Application of hidden Markov models and their extensions to animal movement data
- Authors: Van Niekerk, Bracken
- Date: 2018
- Subjects: Markov processes Animal locomotion Time-series analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/23835 , vital:30624
- Description: Hidden Markov Models (HMMs) have become increasingly popular in animal movement studies as they provide a flexible modelling approach and take the correlation between successive observations into account. They can segment the movement paths into latent states, which can be considered as rough proxies for the behaviours of the animals. This study comprises of two sections, both involving the application of HMMs to large terrestrial mammal movement data. Usually step lengths representing the displacement distances between successive observations, turning angles measuring the tortuosity, or a bivariate input of both variables are used as inputs in the models. It has been found in the literature that the turning angle is either included in the modelling process or it is excluded without much justification for doing so. The first part of this study investigates the nfluence of the turning angle on the model output and resultant interpretations of the HMMs when modelling the trajectories of large terrestrial mammals in southern Africa. Results revealed at different time scales, and for both predator and herbivore species in this study, that the turning angle does not influence the state allocation of the HMMs, which is the main output in terms of interpreting the behaviours of the animals. It is thought in most cases that the inclusion of the turning angle overcomplicates the models unnecessarily without contributing any additional information in terms of the behavioural interpretations or improving the overall fit of the models. This was found for the variety of movements of the species under observation in this study. The second part of this study attempts to validate the state allocation of the HMMs fitted to eland trajectories in the Greater Addo Elephant National Park in the Eastern Cape, with the use of camera trap data. This presented a unique opportunity as this type of data is mainly used for abundance or capture-recapture studies, and the HMMs are rarely validated as the true behaviours of the animals are seldom known. Results revealed that the same diel patterns were detected by the HMMs that were shown by the classified camera trap data. Direct comparisons of the observations where the dates and times matched for the telemetry and camera trap data could be done in several rare instances, which revealed many similarities. Although it was not an ideal comparison, the camera trap data provided a rough validation of the state allocation of the HMMs used in the study.
- Full Text:
- Date Issued: 2018
- Authors: Van Niekerk, Bracken
- Date: 2018
- Subjects: Markov processes Animal locomotion Time-series analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/23835 , vital:30624
- Description: Hidden Markov Models (HMMs) have become increasingly popular in animal movement studies as they provide a flexible modelling approach and take the correlation between successive observations into account. They can segment the movement paths into latent states, which can be considered as rough proxies for the behaviours of the animals. This study comprises of two sections, both involving the application of HMMs to large terrestrial mammal movement data. Usually step lengths representing the displacement distances between successive observations, turning angles measuring the tortuosity, or a bivariate input of both variables are used as inputs in the models. It has been found in the literature that the turning angle is either included in the modelling process or it is excluded without much justification for doing so. The first part of this study investigates the nfluence of the turning angle on the model output and resultant interpretations of the HMMs when modelling the trajectories of large terrestrial mammals in southern Africa. Results revealed at different time scales, and for both predator and herbivore species in this study, that the turning angle does not influence the state allocation of the HMMs, which is the main output in terms of interpreting the behaviours of the animals. It is thought in most cases that the inclusion of the turning angle overcomplicates the models unnecessarily without contributing any additional information in terms of the behavioural interpretations or improving the overall fit of the models. This was found for the variety of movements of the species under observation in this study. The second part of this study attempts to validate the state allocation of the HMMs fitted to eland trajectories in the Greater Addo Elephant National Park in the Eastern Cape, with the use of camera trap data. This presented a unique opportunity as this type of data is mainly used for abundance or capture-recapture studies, and the HMMs are rarely validated as the true behaviours of the animals are seldom known. Results revealed that the same diel patterns were detected by the HMMs that were shown by the classified camera trap data. Direct comparisons of the observations where the dates and times matched for the telemetry and camera trap data could be done in several rare instances, which revealed many similarities. Although it was not an ideal comparison, the camera trap data provided a rough validation of the state allocation of the HMMs used in the study.
- Full Text:
- Date Issued: 2018
Approaches to detecting and assessing patterns, processes and responses to change in South African estuaries
- Authors: Van Niekerk, Lara
- Date: 2018
- Subjects: Estuaries -- South Africa , Climatic changes -- South Africa
- Language: English
- Type: Thesis , Doctoral , PHD
- Identifier: http://hdl.handle.net/10948/45491 , vital:38621
- Description: The research presented indicates deep knowledge of estuary pattern-process-function across a broad range of estuary types. This study successfully developed and applied approaches to detect change at varying temporal and spatial scales in South African estuaries. This assessment was based on the physical characteristics of estuaries and predicted or measured change in the drivers of estuary health. This is the first study in the country to review and synthesise the vulnerability of South African estuaries to Climate Change on a regional scale. Through sound scientific approaches this research has advanced our knowledge on complex estuarine systems and made a significant contribution globally to approaches for the conservation and management of estuaries.
- Full Text:
- Date Issued: 2018
- Authors: Van Niekerk, Lara
- Date: 2018
- Subjects: Estuaries -- South Africa , Climatic changes -- South Africa
- Language: English
- Type: Thesis , Doctoral , PHD
- Identifier: http://hdl.handle.net/10948/45491 , vital:38621
- Description: The research presented indicates deep knowledge of estuary pattern-process-function across a broad range of estuary types. This study successfully developed and applied approaches to detect change at varying temporal and spatial scales in South African estuaries. This assessment was based on the physical characteristics of estuaries and predicted or measured change in the drivers of estuary health. This is the first study in the country to review and synthesise the vulnerability of South African estuaries to Climate Change on a regional scale. Through sound scientific approaches this research has advanced our knowledge on complex estuarine systems and made a significant contribution globally to approaches for the conservation and management of estuaries.
- Full Text:
- Date Issued: 2018
Assessing growth response patterns of microalgae to varying environmental conditions using sediments from ephemeral wetlands
- Authors: Mazwane, Sixolile
- Date: 2018
- Subjects: Microalgae -- South Africa , Wetland conservation -- South Africa Landscape ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/22398 , vital:29966
- Description: Ephemeral wetlands serve as habitats for different fauna and flora. Microalgae make up a bulk of primary production in newly inundated wetlands and have a big influence on the aquatic community structure. As ephemeral wetlands have cyclical drying and wetting phases, algal species found in these habitats have evolved adaptations (i.e. dormancy and cysts) to survive during dry periods and become productive upon inundation. Algae have been used as ecological indicators in many aquatic ecosystems including wetlands, particularly associated with water quality and with varying inundation states. Whilst temperature and water level have been shown to affect microalgal biomass independently, this study aims to assess the effects of these two factors simultaneously on microalgal biomass, species diversity and community changes. The aim of the study was to investigate microalgal dynamics using two ephemeral wetlands in the Nelson Mandela Bay Municipality. The growth response patterns of microalgal communities to varying temperatures and inundation levels through experiments using dry temporary wetland sediments was also assessed. Dry sediments were collected from two depression wetlands with different sediment characteristics (1592 and Elephant Wallow (EW)). The study consisted of replicated treatments with three different surface area: volume ratios (SA:V) (Low surface area: volume (LSAV), Medium (MSAV) and High (HSAV)), inundated with distilled water. The microcosms were placed inside a Conviron environmental growth chamber and illuminated at between 106 to 138 μmol.m-2s-1, with a 12:12 light-dark cycle at constant temperatures of 12 °C (mean winter) and 22 °C (mean summer). Physicochemical data were recorded, and biological samples were collected every 4 days over a 28-day inundation period. In the field, Electrical conductivity (EC) and pH showed a gradual increase over the inundation period. The systems were well oxygenated (6-10 mg L-1). Overall, phytoplankton biomass in the field was ~10 μg L-1 whereas benthic biomass (MPB) was significantly higher 10 – 300 mg L-1. Within the experiments, the phytoplankton biomass showed a pattern while MPB biomass increased gradually for both experiments. There were no significant (p>0.05) differences between the 1592 and EW phytoplankton biomass. However, the MPB biomass showed significant (p<0.05) differences between the two sediments (EW high, 1592 low) and the experiments, respectively. In the winter experiment, the 1592 sediment had high phytoplankton biomass compared to EW, the reverse was observed for the MPB biomass. In summer experiment, similar results were observed in terms of phytoplankton biomass. For the MPBs, 1592 had greater biomass for all treatments compared to EW. The phytoplankton community for both field samples and experiments was dominated by chlorophytes (>50 %), followed by cyanophytes and euglenophytes (with cryptophytes in summer experiment) for both field and experiments. The MPB community was dominated by bacillariophytes (55 %) and chlorophytes (25 %) in the 1592 sediments and this was also the case with EW sediments bacillariophytes (70 %), although cyanophytes (15 %) made up the remainder of the MPB community. The 1592 sediments supported higher diatom abundances under the HSAV compared to the same treatment from the EW wetland suggesting that possibly grain size or texture might be responsible. In contrast, sediments from EW under LSAV conditions showed higher diatom cell numbers possibly indicating that increased water depth has the propensity to support greater diatom assemblages compared with the same water level for sediments from 1592. The results indicate that microalgae community is influenced by sediment type more than it is by water level. From this study it was also established that microalgae were able to reemerge from their dormancy state upon inundation and that tank experiments were successful in simulating natural ephemeral wetland conditions. The findings from this study will add to the available baseline data on microalgal dynamics in the ephemeral wetlands in South Africa, especially in semi-arid areas. This information can be valuable in enhancing our understanding regarding the role of microalgae in ephemeral wetlands in order to conserve them.
- Full Text:
- Date Issued: 2018
- Authors: Mazwane, Sixolile
- Date: 2018
- Subjects: Microalgae -- South Africa , Wetland conservation -- South Africa Landscape ecology -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/22398 , vital:29966
- Description: Ephemeral wetlands serve as habitats for different fauna and flora. Microalgae make up a bulk of primary production in newly inundated wetlands and have a big influence on the aquatic community structure. As ephemeral wetlands have cyclical drying and wetting phases, algal species found in these habitats have evolved adaptations (i.e. dormancy and cysts) to survive during dry periods and become productive upon inundation. Algae have been used as ecological indicators in many aquatic ecosystems including wetlands, particularly associated with water quality and with varying inundation states. Whilst temperature and water level have been shown to affect microalgal biomass independently, this study aims to assess the effects of these two factors simultaneously on microalgal biomass, species diversity and community changes. The aim of the study was to investigate microalgal dynamics using two ephemeral wetlands in the Nelson Mandela Bay Municipality. The growth response patterns of microalgal communities to varying temperatures and inundation levels through experiments using dry temporary wetland sediments was also assessed. Dry sediments were collected from two depression wetlands with different sediment characteristics (1592 and Elephant Wallow (EW)). The study consisted of replicated treatments with three different surface area: volume ratios (SA:V) (Low surface area: volume (LSAV), Medium (MSAV) and High (HSAV)), inundated with distilled water. The microcosms were placed inside a Conviron environmental growth chamber and illuminated at between 106 to 138 μmol.m-2s-1, with a 12:12 light-dark cycle at constant temperatures of 12 °C (mean winter) and 22 °C (mean summer). Physicochemical data were recorded, and biological samples were collected every 4 days over a 28-day inundation period. In the field, Electrical conductivity (EC) and pH showed a gradual increase over the inundation period. The systems were well oxygenated (6-10 mg L-1). Overall, phytoplankton biomass in the field was ~10 μg L-1 whereas benthic biomass (MPB) was significantly higher 10 – 300 mg L-1. Within the experiments, the phytoplankton biomass showed a pattern while MPB biomass increased gradually for both experiments. There were no significant (p>0.05) differences between the 1592 and EW phytoplankton biomass. However, the MPB biomass showed significant (p<0.05) differences between the two sediments (EW high, 1592 low) and the experiments, respectively. In the winter experiment, the 1592 sediment had high phytoplankton biomass compared to EW, the reverse was observed for the MPB biomass. In summer experiment, similar results were observed in terms of phytoplankton biomass. For the MPBs, 1592 had greater biomass for all treatments compared to EW. The phytoplankton community for both field samples and experiments was dominated by chlorophytes (>50 %), followed by cyanophytes and euglenophytes (with cryptophytes in summer experiment) for both field and experiments. The MPB community was dominated by bacillariophytes (55 %) and chlorophytes (25 %) in the 1592 sediments and this was also the case with EW sediments bacillariophytes (70 %), although cyanophytes (15 %) made up the remainder of the MPB community. The 1592 sediments supported higher diatom abundances under the HSAV compared to the same treatment from the EW wetland suggesting that possibly grain size or texture might be responsible. In contrast, sediments from EW under LSAV conditions showed higher diatom cell numbers possibly indicating that increased water depth has the propensity to support greater diatom assemblages compared with the same water level for sediments from 1592. The results indicate that microalgae community is influenced by sediment type more than it is by water level. From this study it was also established that microalgae were able to reemerge from their dormancy state upon inundation and that tank experiments were successful in simulating natural ephemeral wetland conditions. The findings from this study will add to the available baseline data on microalgal dynamics in the ephemeral wetlands in South Africa, especially in semi-arid areas. This information can be valuable in enhancing our understanding regarding the role of microalgae in ephemeral wetlands in order to conserve them.
- Full Text:
- Date Issued: 2018
Assessment of indigenous forest degradation and deforestation along the wild coast, near Port St John’s, Eastern Cape Province, South Africa
- Katende, Lukyamuzi Lucky Fulgentius
- Authors: Katende, Lukyamuzi Lucky Fulgentius
- Date: 2018
- Subjects: Deforestation -- South Africa -- Eastern Cape , Forest degradation -- South Africa -- Eastern Cape Forest management -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30649 , vital:31006
- Description: Indigenous forests along the Wild Coast of the Eastern Cape Province have experienced both degradation and deforestation over the past decades. In early 2000, steps were taken to rehabilitate some of the degraded areas. Nevertheless, there is no monitoring mechanism in place, so little is known about the extent of degradation and impact of the rehabilitation efforts. The present study assesses the extent to which deforestation and degradation of the indigenous forests have occurred, and evaluates rehabilitation efforts in the study area around Port Saint John’s. Forest degradation was defined as the decrease in forest cover density while deforestation was defined as an increase in the trend of light forests and/ or a decrease in dense forests. The details for this study were obtained from multi – temporal remotely sensed data for a period between 1982 and 2013 (31 years). Multi-temporal Landsat satellite imagery for 1982, 1986, 1989, 2002, 2009 and 2013 was acquired and analysed. On the basis of prior knowledge of the area, the supervised classification approach was used. The Maximum likelihood supervised classification technique was used to extract information from satellite data. The classified images were filtered using a majority filtering procedure to reduce noise. Google Earth (Astrium) ancillary images were used to refine the classification based on expert rules. The derived changes in the degraded and rehabilitated areas were further validated through field visits. The overall image classification accuracy generated from Landsat image data ranged from 80% to 90%. It was noted that the area of dense forest almost doubled between 1986 and 1989, coinciding with a 59% decrease in the light forest. Subsequently, dense forests increased by 14,820 ha while light forests decreased by 16,690 ha between 1989 and 2002. The subsequent reduction in light forest coverage is explained by the establishment of the Participatory Forest Management (PFMA) approach by Department of Water Affairs and Forestry (DWAF) which reversed the degradation trend. However, specific degradation hotspots were identified, particularly where new settlements have been established. The emergence of the non-vegetated area increased gradually from 7% in 1986 to 23.4% in 2013. Notably, dense forest was observed to have experienced higher rates of forest degradation and deforestation than the light forest. The highest number patches were 4 recorded between 2002 and 1998, followed by between 2010 and 2013 and lastly 1986. Based on spatial connectedness of patches, the year 1986 had the highest landscape connectedness of forest vegetation (CONAT = 35.3) followed by 2002 and 1996 while the year 2010 and 2013 had the lowest landscape contiguity. Over the study period, the distribution of patches clearly shows that forest degradation and deforestation rates were lower in the years 1986, 1998 and tremendously increased in the later period of between 2010 and 2013. However, as a result of rehabilitation efforts, dense forest was seen to steadily gain more land than light forest. Finer details of degradation trends could not be easily picked from the images used in the study, given their spatial resolution limitations. That notwithstanding, the trends identified are good for overview decisions. The study has also established that de-agraianisation, forest restoration and rehabilitation greatly contributed to increased forest cover. Therefore, with more use of GIS by forest managers, and imagery of the high resolution being readily available, forests will in future be easily monitored using remote sensing.
- Full Text:
- Date Issued: 2018
- Authors: Katende, Lukyamuzi Lucky Fulgentius
- Date: 2018
- Subjects: Deforestation -- South Africa -- Eastern Cape , Forest degradation -- South Africa -- Eastern Cape Forest management -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30649 , vital:31006
- Description: Indigenous forests along the Wild Coast of the Eastern Cape Province have experienced both degradation and deforestation over the past decades. In early 2000, steps were taken to rehabilitate some of the degraded areas. Nevertheless, there is no monitoring mechanism in place, so little is known about the extent of degradation and impact of the rehabilitation efforts. The present study assesses the extent to which deforestation and degradation of the indigenous forests have occurred, and evaluates rehabilitation efforts in the study area around Port Saint John’s. Forest degradation was defined as the decrease in forest cover density while deforestation was defined as an increase in the trend of light forests and/ or a decrease in dense forests. The details for this study were obtained from multi – temporal remotely sensed data for a period between 1982 and 2013 (31 years). Multi-temporal Landsat satellite imagery for 1982, 1986, 1989, 2002, 2009 and 2013 was acquired and analysed. On the basis of prior knowledge of the area, the supervised classification approach was used. The Maximum likelihood supervised classification technique was used to extract information from satellite data. The classified images were filtered using a majority filtering procedure to reduce noise. Google Earth (Astrium) ancillary images were used to refine the classification based on expert rules. The derived changes in the degraded and rehabilitated areas were further validated through field visits. The overall image classification accuracy generated from Landsat image data ranged from 80% to 90%. It was noted that the area of dense forest almost doubled between 1986 and 1989, coinciding with a 59% decrease in the light forest. Subsequently, dense forests increased by 14,820 ha while light forests decreased by 16,690 ha between 1989 and 2002. The subsequent reduction in light forest coverage is explained by the establishment of the Participatory Forest Management (PFMA) approach by Department of Water Affairs and Forestry (DWAF) which reversed the degradation trend. However, specific degradation hotspots were identified, particularly where new settlements have been established. The emergence of the non-vegetated area increased gradually from 7% in 1986 to 23.4% in 2013. Notably, dense forest was observed to have experienced higher rates of forest degradation and deforestation than the light forest. The highest number patches were 4 recorded between 2002 and 1998, followed by between 2010 and 2013 and lastly 1986. Based on spatial connectedness of patches, the year 1986 had the highest landscape connectedness of forest vegetation (CONAT = 35.3) followed by 2002 and 1996 while the year 2010 and 2013 had the lowest landscape contiguity. Over the study period, the distribution of patches clearly shows that forest degradation and deforestation rates were lower in the years 1986, 1998 and tremendously increased in the later period of between 2010 and 2013. However, as a result of rehabilitation efforts, dense forest was seen to steadily gain more land than light forest. Finer details of degradation trends could not be easily picked from the images used in the study, given their spatial resolution limitations. That notwithstanding, the trends identified are good for overview decisions. The study has also established that de-agraianisation, forest restoration and rehabilitation greatly contributed to increased forest cover. Therefore, with more use of GIS by forest managers, and imagery of the high resolution being readily available, forests will in future be easily monitored using remote sensing.
- Full Text:
- Date Issued: 2018
Assessment of the host potential of TETROL [(+)-(2R,3R)-1,1,4,4- tetraphenylbutane-1,2,3,4-TETROL] for the separation of isomers and related compounds
- Authors: Dorfling, Sasha-Lee
- Date: 2018
- Subjects: Chemistry, Organic , Thermal analysis Hydrogen bonding
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/22060 , vital:29817
- Description: In this study, we investigated the potential of a host compound, (+)-(2R,3R)-1,1,4,4- tetraphenylbutane-1,2,3,4-tetrol (TETROL), for use in the separation of isomers and related compounds using host-guest chemistry. The synthesis of this host was carried out using a standard Grignard procedure, reacting naturally-occurring optically active tartaric acid with phenylmagnesium bromide. The feasibility of this host for separating isomers and structurally-related compounds was investigated by recrystallizing it from various potential cyclic, aromatic and aliphatic guest compounds. The extent of host inclusion and guest separation were determined using 1H-NMR spectroscopy and GCMS analyses. Competition studies were conducted to establish the selectivity of TETROL for the various guest species and whether this host would be able to discriminate between them. In this instance, the host was recrystallized from equimolar amounts of binary, ternary, quaternary or quinary mixtures of the guests present in each target study. Subsequent binary or ternary competitions were conducted where the molar ratios of the guest species were varied beyond equimolar, and the guest selectivity of TETROL thus evaluated by means of selectivity profiles. Further analyses included single crystal X-ray diffraction (SCXRD), thermal analysis and Hirshfeld surface analysis. Any crystalline inclusion complex formed between host and guest, with suitable crystal quality, was analysed using SCXRD in order to determine the nature of any significant host–guest interactions present. Thermogravimetric and differential scanning calorimetry experiments provided further insight into complex stability by analysing the thermal events experienced by the complexes as they were heated at 10 °C/min. The data obtained from Hirshfeld surface analyses were used to determine whether host selectivity and/or thermal stability of the complexes were related to the number and types of interactions, observed from SCXRD, between host and guest. The ability of TETROL to discriminate between related compounds was favourable. This host proved to have selective preference for aniline over its methylated derivatives, N-methylaniline and N,N-dimethylaniline. It was also selective for cyclohexylamine over cyclohexanol and cyclohexanone, and discriminated against the pyridine, piperidine and dioxane heterocyclics in favour of morpholine. Furthermore, this host was successful in the selective separation of isomers; for example, it selectively showed discrimination between the three toluidine isomers (p-toluidine > m-toluidine > o-toluidine) and the cresols (p-cresol > m-cresol > o-cresol). Each guest mixture was selected based on data from experiments using either the industrial significance of its separation or because the mixture would add to the knowledge base of the host compound’s preferences and selectivities. In a separate study, TETROL and its derivative, (–)-(2R,3R)-2,3-dimethoxy-1,1,4,4- tetraphenylbutane-1,4-diol (DMT), were also allowed to compete for the inclusion of the guest cyclohexanone, where TETROL demonstrated superior ability. This host, in addition, showed potential for the separation of cis- and trans- 2-methylcyclohexanol.
- Full Text:
- Date Issued: 2018
- Authors: Dorfling, Sasha-Lee
- Date: 2018
- Subjects: Chemistry, Organic , Thermal analysis Hydrogen bonding
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/22060 , vital:29817
- Description: In this study, we investigated the potential of a host compound, (+)-(2R,3R)-1,1,4,4- tetraphenylbutane-1,2,3,4-tetrol (TETROL), for use in the separation of isomers and related compounds using host-guest chemistry. The synthesis of this host was carried out using a standard Grignard procedure, reacting naturally-occurring optically active tartaric acid with phenylmagnesium bromide. The feasibility of this host for separating isomers and structurally-related compounds was investigated by recrystallizing it from various potential cyclic, aromatic and aliphatic guest compounds. The extent of host inclusion and guest separation were determined using 1H-NMR spectroscopy and GCMS analyses. Competition studies were conducted to establish the selectivity of TETROL for the various guest species and whether this host would be able to discriminate between them. In this instance, the host was recrystallized from equimolar amounts of binary, ternary, quaternary or quinary mixtures of the guests present in each target study. Subsequent binary or ternary competitions were conducted where the molar ratios of the guest species were varied beyond equimolar, and the guest selectivity of TETROL thus evaluated by means of selectivity profiles. Further analyses included single crystal X-ray diffraction (SCXRD), thermal analysis and Hirshfeld surface analysis. Any crystalline inclusion complex formed between host and guest, with suitable crystal quality, was analysed using SCXRD in order to determine the nature of any significant host–guest interactions present. Thermogravimetric and differential scanning calorimetry experiments provided further insight into complex stability by analysing the thermal events experienced by the complexes as they were heated at 10 °C/min. The data obtained from Hirshfeld surface analyses were used to determine whether host selectivity and/or thermal stability of the complexes were related to the number and types of interactions, observed from SCXRD, between host and guest. The ability of TETROL to discriminate between related compounds was favourable. This host proved to have selective preference for aniline over its methylated derivatives, N-methylaniline and N,N-dimethylaniline. It was also selective for cyclohexylamine over cyclohexanol and cyclohexanone, and discriminated against the pyridine, piperidine and dioxane heterocyclics in favour of morpholine. Furthermore, this host was successful in the selective separation of isomers; for example, it selectively showed discrimination between the three toluidine isomers (p-toluidine > m-toluidine > o-toluidine) and the cresols (p-cresol > m-cresol > o-cresol). Each guest mixture was selected based on data from experiments using either the industrial significance of its separation or because the mixture would add to the knowledge base of the host compound’s preferences and selectivities. In a separate study, TETROL and its derivative, (–)-(2R,3R)-2,3-dimethoxy-1,1,4,4- tetraphenylbutane-1,4-diol (DMT), were also allowed to compete for the inclusion of the guest cyclohexanone, where TETROL demonstrated superior ability. This host, in addition, showed potential for the separation of cis- and trans- 2-methylcyclohexanol.
- Full Text:
- Date Issued: 2018
Assessment of the microalgal community structure and biomass in surface waterbodies of the Eastern Cape Karoo region earmarked for shale gas exploration
- Authors: Roussouw, Natasha Kimberlee
- Date: 2018
- Subjects: Fresh water -- Eastern Cape , Water-supply -- South Africa -- Eastern Cape Water-supply, Rural -- South Africa -- Eastern Cape Constructed wetlands Watershed management
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/35234 , vital:33655
- Description: The Eastern Cape Karoo region of South Africa typically displays low rainfall and high temperatures, which is particularly concerning considering the shale gas exploration/extraction project proposed recently. Almost 90% of the fracking fluid consists of water and with the Karoo region already classified as a water-stressed region, the increased demand for freshwater for fracking could put further pressure on water resources of the region. By understanding the ecological functioning of the lower trophic levels, likely implications for higher trophic levels can be determined, and ultimately, recommendations for mitigation actions can be made. Here, observations aimed at understanding the dynamics of lower trophic levels are presented, that is, the microalgal biomass and assemblage composition within three characteristic surface waterbodies of the region. In addition, the work focuses on the smaller, more dynamic temporary wetland systems typical of this water-scarce region, with the aim of understanding the significance of single species macrophyte cover in relation to the lower trophic levels. Thirty-three waterbodies were sampled (natural depressions = 13, dams = 9, rivers = 11) during November 2014 (austral spring) and April 2015 (austral autumn). Waterbody physico-chemistry, hydro-morphometry, habitat cover and surrounding land-use, as well as microalgal biomass and assemblage composition within each waterbody type were measured. Thirteen natural depression wetlands were sampled during October 2015, December 2015 and March 2016. Once again, waterbody physico-chemistry, microalgal biomass and assemblage composition were measured. However, in addition, Schoenoplectus decipiens macrophyte cover and microalgal (diatom) species composition were also determined. In general, no significant differences in microalgal biomass between the three main waterbody types of the Eastern Cape Karoo region were found; however, the different waterbody types each displayed distinct microalgal assemblage compositions. Also, Schoenoplectus decipiens cover had negligible effects on microalgal biomass and assemblages in the temporary wetlands investigated here. These results suggest that the generalist nature of species occupying these systems allows them to adapt to the ever-changing conditions typical of this region. Ongoing monitoring initiatives considering impending hydraulic fracturing activities should include a comprehensive species-level diversity census, which could further inform management of any impacts associated with this potential disturbance.
- Full Text:
- Date Issued: 2018
- Authors: Roussouw, Natasha Kimberlee
- Date: 2018
- Subjects: Fresh water -- Eastern Cape , Water-supply -- South Africa -- Eastern Cape Water-supply, Rural -- South Africa -- Eastern Cape Constructed wetlands Watershed management
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/35234 , vital:33655
- Description: The Eastern Cape Karoo region of South Africa typically displays low rainfall and high temperatures, which is particularly concerning considering the shale gas exploration/extraction project proposed recently. Almost 90% of the fracking fluid consists of water and with the Karoo region already classified as a water-stressed region, the increased demand for freshwater for fracking could put further pressure on water resources of the region. By understanding the ecological functioning of the lower trophic levels, likely implications for higher trophic levels can be determined, and ultimately, recommendations for mitigation actions can be made. Here, observations aimed at understanding the dynamics of lower trophic levels are presented, that is, the microalgal biomass and assemblage composition within three characteristic surface waterbodies of the region. In addition, the work focuses on the smaller, more dynamic temporary wetland systems typical of this water-scarce region, with the aim of understanding the significance of single species macrophyte cover in relation to the lower trophic levels. Thirty-three waterbodies were sampled (natural depressions = 13, dams = 9, rivers = 11) during November 2014 (austral spring) and April 2015 (austral autumn). Waterbody physico-chemistry, hydro-morphometry, habitat cover and surrounding land-use, as well as microalgal biomass and assemblage composition within each waterbody type were measured. Thirteen natural depression wetlands were sampled during October 2015, December 2015 and March 2016. Once again, waterbody physico-chemistry, microalgal biomass and assemblage composition were measured. However, in addition, Schoenoplectus decipiens macrophyte cover and microalgal (diatom) species composition were also determined. In general, no significant differences in microalgal biomass between the three main waterbody types of the Eastern Cape Karoo region were found; however, the different waterbody types each displayed distinct microalgal assemblage compositions. Also, Schoenoplectus decipiens cover had negligible effects on microalgal biomass and assemblages in the temporary wetlands investigated here. These results suggest that the generalist nature of species occupying these systems allows them to adapt to the ever-changing conditions typical of this region. Ongoing monitoring initiatives considering impending hydraulic fracturing activities should include a comprehensive species-level diversity census, which could further inform management of any impacts associated with this potential disturbance.
- Full Text:
- Date Issued: 2018
Biological activity of macrofungi in South Africa against respiratory and lung disease
- Authors: Didloff, Jenske
- Date: 2018
- Subjects: Macrofungi , Microbiology Medical microbiology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30138 , vital:30835
- Description: Macrofungi represent an untapped source of natural bioactive compounds for various diseases, which have been targeted as potential therapeutic agents. The medicinal uses of macrofungi discovered to date include anticancer, antidiabetic, antioxidant, antimicrobial, and immunomodulatory properties. The knowledge regarding the medicinal uses of macrofungi in Africa is limited; however, it is believed that Africa may contain a large number of unidentified species of macrofungi. The objectives of this study were to: (i) screen the macrofungal extracts for antimicrobial activity against microorganisms responsible for respiratory diseases (e.g. Pseudomonas aeruginosa, Klebsiella pneumoniae, Streptococcus pneumoniae, Streptococcus pyogenes, Staphylococcus aureus, Mycobacterium tuberculosis, HIV-1), (ii) determine the effect of macrofungal extracts on bacterial morphology, (iii) investigate the cytotoxicity of macrofungal extracts against human lung carcinoma cells, and to elucidate the mechanism/s of action of cytotoxicity/anticancer activity. In vitro bioassays for antimicrobial activity included: ρ-iodonitrotetrazolium chloride assays and microplate alamar blue assay (MABA), while the HIV-1 reverse transcriptase colorimetric ELISA and HIV-1 protease fluorometric assay kits were used for anti-HIV activity. Cytotoxicity of the macrofungal species against A549 lung cancer cell line was measured using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay, and the IC50 values determined for the most cytotoxic macrofungal spp. The mechanism of cytotoxicity was investigated by cell cycle analysis and fluorescent staining to observe morphological and biochemical changes (i.e. acridine orange, caspase activation). Ethanol extracts of Amanita foetidissima, Gymnopilus junonius, Pisolithus tinctorius, Fomitopsis lilacinogilva, Stereum hirsutum and Pycnoporus sanguineus showed higher antimicrobial activity against the Gram-positive bacteria than aqueous extracts, with S. pneumoniae being the most susceptible. The ethanol extracts of Agaricus campestris, Chlorophyllum molybdites, Gymnopilus penetrans, Pseudophaeolus baudonii and Laetiporus sulphureus exhibited anti-TB (tuberculosis) activity with minimum inhibitory concentrations (MICs) ranging between 500-1,000 μg/mL. C. molybdites ethanol extract inhibited HIV-1 protease activity (IC50: 49.7 μg/mL). The macrofungal extracts did not inhibit HIV-1 reverse transcriptase activity. Ethanol extracts of F. lilacinogilva, G. junonius, P. sanguineus and the aqueous extract iv of P. baudonii were cytotoxic against A549 lung cancer cells at IC50 values of 69.2±3.6, 57±5, 7.4±1.1 and 53.6±1.1 μg/mL, respectively. Cell cycle arrest was observed in the G2 phase for both P. sanguineus and P. baudonii, and G2/M and early M phases for G. junonius and F. lilacinogilva, respectively. Apoptosis induced by macrofungal extracts was confirmed by fluorescent staining. Morphological and biochemical changes included chromatin condensation, membrane blebbing, loss of cytoskeletal structure, caspase activation and phosphatidylserine translocation. This study demonstrates the biological activities of selected macrofungal extracts and their potential mechanisms of action. Isolation and identification of active compounds require further analysis.
- Full Text:
- Date Issued: 2018
- Authors: Didloff, Jenske
- Date: 2018
- Subjects: Macrofungi , Microbiology Medical microbiology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30138 , vital:30835
- Description: Macrofungi represent an untapped source of natural bioactive compounds for various diseases, which have been targeted as potential therapeutic agents. The medicinal uses of macrofungi discovered to date include anticancer, antidiabetic, antioxidant, antimicrobial, and immunomodulatory properties. The knowledge regarding the medicinal uses of macrofungi in Africa is limited; however, it is believed that Africa may contain a large number of unidentified species of macrofungi. The objectives of this study were to: (i) screen the macrofungal extracts for antimicrobial activity against microorganisms responsible for respiratory diseases (e.g. Pseudomonas aeruginosa, Klebsiella pneumoniae, Streptococcus pneumoniae, Streptococcus pyogenes, Staphylococcus aureus, Mycobacterium tuberculosis, HIV-1), (ii) determine the effect of macrofungal extracts on bacterial morphology, (iii) investigate the cytotoxicity of macrofungal extracts against human lung carcinoma cells, and to elucidate the mechanism/s of action of cytotoxicity/anticancer activity. In vitro bioassays for antimicrobial activity included: ρ-iodonitrotetrazolium chloride assays and microplate alamar blue assay (MABA), while the HIV-1 reverse transcriptase colorimetric ELISA and HIV-1 protease fluorometric assay kits were used for anti-HIV activity. Cytotoxicity of the macrofungal species against A549 lung cancer cell line was measured using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay, and the IC50 values determined for the most cytotoxic macrofungal spp. The mechanism of cytotoxicity was investigated by cell cycle analysis and fluorescent staining to observe morphological and biochemical changes (i.e. acridine orange, caspase activation). Ethanol extracts of Amanita foetidissima, Gymnopilus junonius, Pisolithus tinctorius, Fomitopsis lilacinogilva, Stereum hirsutum and Pycnoporus sanguineus showed higher antimicrobial activity against the Gram-positive bacteria than aqueous extracts, with S. pneumoniae being the most susceptible. The ethanol extracts of Agaricus campestris, Chlorophyllum molybdites, Gymnopilus penetrans, Pseudophaeolus baudonii and Laetiporus sulphureus exhibited anti-TB (tuberculosis) activity with minimum inhibitory concentrations (MICs) ranging between 500-1,000 μg/mL. C. molybdites ethanol extract inhibited HIV-1 protease activity (IC50: 49.7 μg/mL). The macrofungal extracts did not inhibit HIV-1 reverse transcriptase activity. Ethanol extracts of F. lilacinogilva, G. junonius, P. sanguineus and the aqueous extract iv of P. baudonii were cytotoxic against A549 lung cancer cells at IC50 values of 69.2±3.6, 57±5, 7.4±1.1 and 53.6±1.1 μg/mL, respectively. Cell cycle arrest was observed in the G2 phase for both P. sanguineus and P. baudonii, and G2/M and early M phases for G. junonius and F. lilacinogilva, respectively. Apoptosis induced by macrofungal extracts was confirmed by fluorescent staining. Morphological and biochemical changes included chromatin condensation, membrane blebbing, loss of cytoskeletal structure, caspase activation and phosphatidylserine translocation. This study demonstrates the biological activities of selected macrofungal extracts and their potential mechanisms of action. Isolation and identification of active compounds require further analysis.
- Full Text:
- Date Issued: 2018
Capacitance spectroscopy of GaAs p-i-n solar cells embedded with GaNAs quantum wells
- Authors: Venter, Danielle Ahlers
- Date: 2018
- Subjects: Solar cells , Photocatalysis Nanotechnology Fuel cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21593 , vital:29713
- Description: The search for higher efficiencies in solar cell technology has brought forth competitive ideas, among them tandem solar cells (TSC) and intermediate-band solar cells (IBSC). These cells deliver higher efficiencies by absorbing a wider range of the electro-magnetic spectrum compared to conventional cells, but do come with unique challenges. This includes, amongst others, the need to find suitable material systems, which can fully realise the requirements behind the concept. In this study, the notion of using dilute nitrides in III-V systems as a candidate for the IBSC is considered. Incorporation of GaNAs QW structures into GaAs p-i-n solar cells are structurally, optically and electrically characterised. At a first estimate the photovoltaic properties of the material is obtained through current-voltage (I-V) measurements under illumination. It is observed that the open circuit voltage (𝑉𝑂𝐶), short circuit current (𝐼𝑆𝐶) and conversion efficiency decrease upon the incorporation of the QWs. Electrically active defect levels are notorious for reducing the life time of electron-hole pairs, directly impacting cell efficiency. In an effort to gain a clearer understanding of this behavior, the study of electrically active deep level center present in such devices were investigated. A comprehensive understanding of defects in semiconductors remains of fundamental importance and thus reinforces this approach. This was done using two of the most commonly used semiconductor defect spectroscopy techniques viz. admittance spectroscopy (AS) and deep level transient spectroscopy (DLTS). Since in principle, these two techniques are similar, deep level related results were compared in order to verify the validity of the results. The devices under study, GaNAs/GaAs embedded QW p-i-n solar cells, were grown by molecular beam epitaxy (MBE). In particular, the doping of the quantum wells was varied and this effect on the electrical properties investigated. Four samples were studied and their electrical, optical and structural properties compared. The sample series consisted of a reference GaAs p-i-n diode that contained no embedded QWs and three GaAs p-i-n diodes each containing ten equally spaced and equally thick GaNAs QW layers. These layers were either Beryllium (Be) doped (p-type), un-doped or Silicon (Si) doped (n-type) respectively. Both AS and DLTS revealed deep level centers present in the devices. Each technique presented its own list of advantages and disadvantages and the collaborative use of both of them was found to be complementary in their determination of deep level defect centers. The correlation of these defects with the QWs is not clear as the structures were not optimized for capacitance spectroscopic measurements. NextNano++ simulation software was also used to theoretically model the electronic structure of the sample. The addition of the applied bias and its effect on the cross-over point of the Fermi level and the deep level energy, as well as the depletion width was investigated. This was a useful and essential tool for the interpretation of the results obtained and for the design of optimal structures for future studies.
- Full Text:
- Date Issued: 2018
- Authors: Venter, Danielle Ahlers
- Date: 2018
- Subjects: Solar cells , Photocatalysis Nanotechnology Fuel cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21593 , vital:29713
- Description: The search for higher efficiencies in solar cell technology has brought forth competitive ideas, among them tandem solar cells (TSC) and intermediate-band solar cells (IBSC). These cells deliver higher efficiencies by absorbing a wider range of the electro-magnetic spectrum compared to conventional cells, but do come with unique challenges. This includes, amongst others, the need to find suitable material systems, which can fully realise the requirements behind the concept. In this study, the notion of using dilute nitrides in III-V systems as a candidate for the IBSC is considered. Incorporation of GaNAs QW structures into GaAs p-i-n solar cells are structurally, optically and electrically characterised. At a first estimate the photovoltaic properties of the material is obtained through current-voltage (I-V) measurements under illumination. It is observed that the open circuit voltage (𝑉𝑂𝐶), short circuit current (𝐼𝑆𝐶) and conversion efficiency decrease upon the incorporation of the QWs. Electrically active defect levels are notorious for reducing the life time of electron-hole pairs, directly impacting cell efficiency. In an effort to gain a clearer understanding of this behavior, the study of electrically active deep level center present in such devices were investigated. A comprehensive understanding of defects in semiconductors remains of fundamental importance and thus reinforces this approach. This was done using two of the most commonly used semiconductor defect spectroscopy techniques viz. admittance spectroscopy (AS) and deep level transient spectroscopy (DLTS). Since in principle, these two techniques are similar, deep level related results were compared in order to verify the validity of the results. The devices under study, GaNAs/GaAs embedded QW p-i-n solar cells, were grown by molecular beam epitaxy (MBE). In particular, the doping of the quantum wells was varied and this effect on the electrical properties investigated. Four samples were studied and their electrical, optical and structural properties compared. The sample series consisted of a reference GaAs p-i-n diode that contained no embedded QWs and three GaAs p-i-n diodes each containing ten equally spaced and equally thick GaNAs QW layers. These layers were either Beryllium (Be) doped (p-type), un-doped or Silicon (Si) doped (n-type) respectively. Both AS and DLTS revealed deep level centers present in the devices. Each technique presented its own list of advantages and disadvantages and the collaborative use of both of them was found to be complementary in their determination of deep level defect centers. The correlation of these defects with the QWs is not clear as the structures were not optimized for capacitance spectroscopic measurements. NextNano++ simulation software was also used to theoretically model the electronic structure of the sample. The addition of the applied bias and its effect on the cross-over point of the Fermi level and the deep level energy, as well as the depletion width was investigated. This was a useful and essential tool for the interpretation of the results obtained and for the design of optimal structures for future studies.
- Full Text:
- Date Issued: 2018
Characterization and ecology of selected micro-estuaries and micro-outlets in the Eastern Cape province, South Africa
- Authors: Magoro, Mandla Leon
- Date: 2018
- Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Estuaries -- Management Estuaries -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/31644 , vital:31640
- Description: South Africa has more than 200 Temporarily Open/Closed Estuaries (TOCEs) along its approximately 3000 km coastline. In addition, there are approximately 200 micro-estuaries and micro-outlets on the subcontinent, many of which share some of the characteristics with TOCEs but differ in that they are supplied by localised coastal stream catchments with a more limited supply of freshwater and less connectivity to the marine environment. Between 2015 and 2016, this study endeavoured to investigate the physico-chemical properties, microalgal dynamics as well as the seasonal species abundance and composition of aquatic invertebrates and fishes in four micro-estuaries and four micro-outlets along the warm-temperate section of the Eastern Cape coast. The micro-outlets were dominated by oligohaline or freshwater conditions, while the micro-estuaries were mostly mesohaline. Microalgal biomass in these systems was influenced by temperature, nutrient conditions and light availability. Chironomidae and Ephemeroptera dominated benthic macro-invertebrate communities in the micro-outlets, while Amphipoda and Mysida were most dominant in micro-estuaries. Copepoda and Amphipoda dominated the zooplankton assemblages in both system types. Nekton communities in micro-outlets were dominated by juvenile Myxus capensis and tadpoles (mostly Xenopus laevis), while Oreochromis mossambicus, Gilchristella aestuaria, M. capensis and Mugil cephalus were the four most common species in the micro-estuaries. Seasonal variations in physico-chemical parameters and community composition of both the nekton and invertebrates were recorded during this study. Micro-estuaries and micro-outlets exhibited relatively lower diversity and abundances of biota than TOCEs. Furthermore, the micro-estuaries have a low estuarine function when compared to TOCEs, while the micro-outlets have very limited estuarine characteristics and were dominated by freshwater biota. The micro-systems are smaller in size and contain lower proportions of estuary-associated taxa when compared to larger estuarine systems such as TOCEs and permanently open estuaries. The results of this study confirm that there are distinctions between the biota of iv the two micro-system types, thus making biotic assemblages, together with physico-chemical parameters, a viable tool for differentiating between micro-estuaries and micro-outlets. This study represents the first investigation into the ecological functioning of micro-estuaries and micro-outlets. As a whole, micro-systems serve as nursery areas for freshwater-associated invertebrate taxa. Due to their limited periods of stability, micro-estuaries serve as intermediate nursery areas for 0+ juveniles of estuary-associated marine fish which, after less than a year, then migrate to larger estuarine systems located nearby. The small catchment size and short period of stability in these systems heightens their level of sensitivity to water flow alterations through dams, direct water abstraction, afforestation and watercourse diversion, while their lower buffering capacity makes them more susceptible to pollution and nutrient inputs from intensive agricultural activities and urban expansion.
- Full Text:
- Date Issued: 2018
- Authors: Magoro, Mandla Leon
- Date: 2018
- Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Estuaries -- Management Estuaries -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/31644 , vital:31640
- Description: South Africa has more than 200 Temporarily Open/Closed Estuaries (TOCEs) along its approximately 3000 km coastline. In addition, there are approximately 200 micro-estuaries and micro-outlets on the subcontinent, many of which share some of the characteristics with TOCEs but differ in that they are supplied by localised coastal stream catchments with a more limited supply of freshwater and less connectivity to the marine environment. Between 2015 and 2016, this study endeavoured to investigate the physico-chemical properties, microalgal dynamics as well as the seasonal species abundance and composition of aquatic invertebrates and fishes in four micro-estuaries and four micro-outlets along the warm-temperate section of the Eastern Cape coast. The micro-outlets were dominated by oligohaline or freshwater conditions, while the micro-estuaries were mostly mesohaline. Microalgal biomass in these systems was influenced by temperature, nutrient conditions and light availability. Chironomidae and Ephemeroptera dominated benthic macro-invertebrate communities in the micro-outlets, while Amphipoda and Mysida were most dominant in micro-estuaries. Copepoda and Amphipoda dominated the zooplankton assemblages in both system types. Nekton communities in micro-outlets were dominated by juvenile Myxus capensis and tadpoles (mostly Xenopus laevis), while Oreochromis mossambicus, Gilchristella aestuaria, M. capensis and Mugil cephalus were the four most common species in the micro-estuaries. Seasonal variations in physico-chemical parameters and community composition of both the nekton and invertebrates were recorded during this study. Micro-estuaries and micro-outlets exhibited relatively lower diversity and abundances of biota than TOCEs. Furthermore, the micro-estuaries have a low estuarine function when compared to TOCEs, while the micro-outlets have very limited estuarine characteristics and were dominated by freshwater biota. The micro-systems are smaller in size and contain lower proportions of estuary-associated taxa when compared to larger estuarine systems such as TOCEs and permanently open estuaries. The results of this study confirm that there are distinctions between the biota of iv the two micro-system types, thus making biotic assemblages, together with physico-chemical parameters, a viable tool for differentiating between micro-estuaries and micro-outlets. This study represents the first investigation into the ecological functioning of micro-estuaries and micro-outlets. As a whole, micro-systems serve as nursery areas for freshwater-associated invertebrate taxa. Due to their limited periods of stability, micro-estuaries serve as intermediate nursery areas for 0+ juveniles of estuary-associated marine fish which, after less than a year, then migrate to larger estuarine systems located nearby. The small catchment size and short period of stability in these systems heightens their level of sensitivity to water flow alterations through dams, direct water abstraction, afforestation and watercourse diversion, while their lower buffering capacity makes them more susceptible to pollution and nutrient inputs from intensive agricultural activities and urban expansion.
- Full Text:
- Date Issued: 2018