Assessing flood vulnerability in the Nelson Mandela Bay Metro
- Authors: Zuze, Hillary
- Date: 2019
- Subjects: Floods -- South Africa -- Nelson Mandela Bay Municipality , Natural disasters Hazardous geographic environments Hazardous geographic environments -- Risk assessment , Climatic changes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44224 , vital:37135
- Description: Floods are the most frequent amongst all global natural disasters at present, causing problems such as bridge collapses, fatalities, building damages and traffic delays. Between 1995 and 2015, there were approximately 3062 global flood disasters which accounted for 56% of all declared natural disasters and these affected 2.3 billion people (almost a third of the world’s population at the time) (EMDAT, 2015). The cost of damages for this period incurred for buildings and other infrastructure was at an all-time high of R23.69 (US$1.891) trillion. It is postulated through various studies that the number of urban flood events reported is increasing significantly in comparison to the previous decades (Armah et al., 2010; Lóczy, 2013; Leaning and Guha-Sapir, 2013; EMDAT, 2015; Tanoue et al., 2016; Rogger et al., 2017). Some research has also noted an increase in the number of floods per year, which has ascended to an average of 171 in this decade, from an annual average of 127 in the previous one (Dozier, 2013; Guha Sapir et al., 2016). Sources such as the Centre of Research and Epidemiological Disasters (Guha Sapir et al., 2016) recorded that from 1995 to 2015, globally, millions of homes were vulnerable to weather-related disasters, along with 130,000 health and education facilities. During this period, urban floods accounted for 98% of houses damaged and 99.9% of education and health facilities demolished by a weather-related disaster (Davies, 2017). Flooding is particularly harmful in terms of fatalities in developing countries due to inadequate flood protection and mitigation measures (Di Baldassarre et al., 2010; Dozier, 2013). Some studies attribute the high fatalities in developing countries to the inadequate disaster management strategies implemented to counter the impacts of urban flooding (Egbinola et al., 2015; Pazzi et al., 2016; Mavhura et al., 2017). Other authors have attributed the high fatalities to the sheer number of people residing in areas prone to flooding, which has been the knock-on effect of rapidly expanding cities, overwhelmed government agencies, and a pre-existing political and social system that promotes marginalisation (Collins, 2008; Aboagye, 2012). The occupation of flood-prone areas by settlements, which is a common feature in developing countries, is the major contributor to the fatalities as it involves a degree of risk. Risk is exposure to an undesired event, in this case flooding, and contributes directly to differing levels of vulnerability (Samuels, 2018). Communities have differing perceptions of flood vulnerability because of a combination of factors. These include the magnitude of the flood experienced, the number of people or the value of assets potentially affected by flooding due to location, and the lack of socioeconomic capacity to do anything to alter their vulnerability to a disaster (Hall et al., 2005; Adger, 2006; Birkmann et al., 2013; Rogger et al., 2017). Some communities acknowledge that there are people residing in flood prone areas and take measures to reduce or eliminate the risk through social, political and economic networks. In other cases, communities are able to identify their exposure to flooding but do not have the capacity to reduce the effects (Bouchard et al., 2007; Agbaoye, 2012; Musungu et al., 2012; Siyongwana, Heijne, and Tele et al., 20155).
- Full Text:
- Date Issued: 2019
- Authors: Zuze, Hillary
- Date: 2019
- Subjects: Floods -- South Africa -- Nelson Mandela Bay Municipality , Natural disasters Hazardous geographic environments Hazardous geographic environments -- Risk assessment , Climatic changes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44224 , vital:37135
- Description: Floods are the most frequent amongst all global natural disasters at present, causing problems such as bridge collapses, fatalities, building damages and traffic delays. Between 1995 and 2015, there were approximately 3062 global flood disasters which accounted for 56% of all declared natural disasters and these affected 2.3 billion people (almost a third of the world’s population at the time) (EMDAT, 2015). The cost of damages for this period incurred for buildings and other infrastructure was at an all-time high of R23.69 (US$1.891) trillion. It is postulated through various studies that the number of urban flood events reported is increasing significantly in comparison to the previous decades (Armah et al., 2010; Lóczy, 2013; Leaning and Guha-Sapir, 2013; EMDAT, 2015; Tanoue et al., 2016; Rogger et al., 2017). Some research has also noted an increase in the number of floods per year, which has ascended to an average of 171 in this decade, from an annual average of 127 in the previous one (Dozier, 2013; Guha Sapir et al., 2016). Sources such as the Centre of Research and Epidemiological Disasters (Guha Sapir et al., 2016) recorded that from 1995 to 2015, globally, millions of homes were vulnerable to weather-related disasters, along with 130,000 health and education facilities. During this period, urban floods accounted for 98% of houses damaged and 99.9% of education and health facilities demolished by a weather-related disaster (Davies, 2017). Flooding is particularly harmful in terms of fatalities in developing countries due to inadequate flood protection and mitigation measures (Di Baldassarre et al., 2010; Dozier, 2013). Some studies attribute the high fatalities in developing countries to the inadequate disaster management strategies implemented to counter the impacts of urban flooding (Egbinola et al., 2015; Pazzi et al., 2016; Mavhura et al., 2017). Other authors have attributed the high fatalities to the sheer number of people residing in areas prone to flooding, which has been the knock-on effect of rapidly expanding cities, overwhelmed government agencies, and a pre-existing political and social system that promotes marginalisation (Collins, 2008; Aboagye, 2012). The occupation of flood-prone areas by settlements, which is a common feature in developing countries, is the major contributor to the fatalities as it involves a degree of risk. Risk is exposure to an undesired event, in this case flooding, and contributes directly to differing levels of vulnerability (Samuels, 2018). Communities have differing perceptions of flood vulnerability because of a combination of factors. These include the magnitude of the flood experienced, the number of people or the value of assets potentially affected by flooding due to location, and the lack of socioeconomic capacity to do anything to alter their vulnerability to a disaster (Hall et al., 2005; Adger, 2006; Birkmann et al., 2013; Rogger et al., 2017). Some communities acknowledge that there are people residing in flood prone areas and take measures to reduce or eliminate the risk through social, political and economic networks. In other cases, communities are able to identify their exposure to flooding but do not have the capacity to reduce the effects (Bouchard et al., 2007; Agbaoye, 2012; Musungu et al., 2012; Siyongwana, Heijne, and Tele et al., 20155).
- Full Text:
- Date Issued: 2019
Testing the application of coastal altimetry in two South-Eastern African bights: the relationship between mesoscale features and chlorophyll-a, cyclonic eddies in the Indian Ocean
- Authors: Ziegler, Lisa
- Date: 2018
- Subjects: Oceanography -- Remote sensing -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/15225 , vital:28188
- Description: Enhanced coastal altimetry, adaptive Leading-Edge Subwaveform(ALES), was used to study wo well known eddies along the southeastern African coast, namely the Delagoa Bight Lee Eddy and the Durban Lee Eddy. I address a two part problem. Firstly, how well does the application of coastal altimetry techniques behave in the coastal region? Secondly, is there a relationship between the eddies’ presence and chlorophyll-a (chl-a). Sea level anomalies (SLA) were computed from the re-tracked ALES data of two satellite missions — Envisat (used for Delagoa Bight eddy) and Jason -2 (for the Durban eddy) with geophysical corrections removed. These datasets were compared with the original satellite, 1 Hz RADS, AND AVISO gridded data. Two regions were selected to see if there was a biophysical link. A centre region of the eddy and an outside region of the eddy were taken. Results indicate that coastal altimetrywas successful in delimiting both features. ALES was less noisey and able to recover more data that were missed by the 1 Hz RADS dataset. Hovmöller plots showed the Delagoa Bight eddy to be more of a transient feature than semi-permanent, as had previously been suggested. Results from the linear model indicate a negative correlation between SLA and chl-a. This influence could be through facilitation of chl-a in the bight or just retaining chla. This is hard to elucidate without in situ data. These results show a promising indication that coastal altimetry will be a useful and reliable product to further biophysical coupling research along the coast.
- Full Text:
- Date Issued: 2018
- Authors: Ziegler, Lisa
- Date: 2018
- Subjects: Oceanography -- Remote sensing -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/15225 , vital:28188
- Description: Enhanced coastal altimetry, adaptive Leading-Edge Subwaveform(ALES), was used to study wo well known eddies along the southeastern African coast, namely the Delagoa Bight Lee Eddy and the Durban Lee Eddy. I address a two part problem. Firstly, how well does the application of coastal altimetry techniques behave in the coastal region? Secondly, is there a relationship between the eddies’ presence and chlorophyll-a (chl-a). Sea level anomalies (SLA) were computed from the re-tracked ALES data of two satellite missions — Envisat (used for Delagoa Bight eddy) and Jason -2 (for the Durban eddy) with geophysical corrections removed. These datasets were compared with the original satellite, 1 Hz RADS, AND AVISO gridded data. Two regions were selected to see if there was a biophysical link. A centre region of the eddy and an outside region of the eddy were taken. Results indicate that coastal altimetrywas successful in delimiting both features. ALES was less noisey and able to recover more data that were missed by the 1 Hz RADS dataset. Hovmöller plots showed the Delagoa Bight eddy to be more of a transient feature than semi-permanent, as had previously been suggested. Results from the linear model indicate a negative correlation between SLA and chl-a. This influence could be through facilitation of chl-a in the bight or just retaining chla. This is hard to elucidate without in situ data. These results show a promising indication that coastal altimetry will be a useful and reliable product to further biophysical coupling research along the coast.
- Full Text:
- Date Issued: 2018
The reactions of ruthenium (ii) polypyridyl complexes
- Authors: Zheng, Sipeng
- Date: 2009
- Subjects: Ruthenium , Ruthenium compounds , Chemical reactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10374 , http://hdl.handle.net/10948/1089 , Ruthenium , Ruthenium compounds , Chemical reactions
- Description: Ruthenium (II) polypyridine complexes in general have been extensively studied because of their unique redox and photochemical properties. A typical example of such complexes is tris(2,2’-bipyridyl) ruthenium (II). In this study, this complex was synthesized and then characterized using electronic spectroscopy and cyclic voltammetry. It was also shown that the ruthenium concentration could be accurately determined using ICP-MS. It was found that the complex is very stable in various chemical environments. It was observed from spectrophotometric investigations that persulphate and lead dioxide easily oxidize Ru(bpy)3 2+ to Ru(bpy)3 3+ in the presence of heat and H2SO4, respectively. It was also observed that the oxidation between Ru(bpy)3 2+ and cerium (IV) occurred at approximately 3:2 [Ce(IV)]/[Ru(II)] mole ratio. The resultant Ru(bpy)3 3+ solution was unstable in the presence of light and recovery of Ru(bpy)3 2+ occurred gradually. The regeneration of Ru(bpy)3 2+ from Ru(bpy)3 3+ was found to be a multistep process, which appears to involve the formation of an intermediate species. The following reaction model was found to best explain the kinetic data obtained: Ru(bpy)3 2+ + Ce(IV) → Ru(bpy)3 3+ Ru(bpy)3 3+ → Ru(bpy)3 2+ Ru(bpy)3 3+ → Ru* intermediate Ru* intermediate → Ru(bpy)3 2+ Theoretical rate constants were also calculated for the same process under the experimental conditions. The comparison between the experimental and theoretical results gave good agreement. In addition, the factors that influence the rate of the regeneration of Ru(bpy)3 2+ from Ru(bpy)3 3+ were also discussed.
- Full Text:
- Date Issued: 2009
- Authors: Zheng, Sipeng
- Date: 2009
- Subjects: Ruthenium , Ruthenium compounds , Chemical reactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10374 , http://hdl.handle.net/10948/1089 , Ruthenium , Ruthenium compounds , Chemical reactions
- Description: Ruthenium (II) polypyridine complexes in general have been extensively studied because of their unique redox and photochemical properties. A typical example of such complexes is tris(2,2’-bipyridyl) ruthenium (II). In this study, this complex was synthesized and then characterized using electronic spectroscopy and cyclic voltammetry. It was also shown that the ruthenium concentration could be accurately determined using ICP-MS. It was found that the complex is very stable in various chemical environments. It was observed from spectrophotometric investigations that persulphate and lead dioxide easily oxidize Ru(bpy)3 2+ to Ru(bpy)3 3+ in the presence of heat and H2SO4, respectively. It was also observed that the oxidation between Ru(bpy)3 2+ and cerium (IV) occurred at approximately 3:2 [Ce(IV)]/[Ru(II)] mole ratio. The resultant Ru(bpy)3 3+ solution was unstable in the presence of light and recovery of Ru(bpy)3 2+ occurred gradually. The regeneration of Ru(bpy)3 2+ from Ru(bpy)3 3+ was found to be a multistep process, which appears to involve the formation of an intermediate species. The following reaction model was found to best explain the kinetic data obtained: Ru(bpy)3 2+ + Ce(IV) → Ru(bpy)3 3+ Ru(bpy)3 3+ → Ru(bpy)3 2+ Ru(bpy)3 3+ → Ru* intermediate Ru* intermediate → Ru(bpy)3 2+ Theoretical rate constants were also calculated for the same process under the experimental conditions. The comparison between the experimental and theoretical results gave good agreement. In addition, the factors that influence the rate of the regeneration of Ru(bpy)3 2+ from Ru(bpy)3 3+ were also discussed.
- Full Text:
- Date Issued: 2009
A mathematical study on optimal prevention and control strategies for tuberculosis: case study for Port Elizabeth, South Africa
- Authors: Zembe, Pumelela Vincent
- Date: 2016
- Subjects: Tuberculosis -- South Africa -- Port Elizabeth -- Prevention Tuberculosis -- Mathematical models , Tuberculosis -- Case studies
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12823 , vital:27124
- Description: In this treatise a SEIR model for the transmission of tuberculosis was proposed. It assumes that the latent infected individuals progress to active tuberculosis through endogenous reactivation and exogenous re-infection and that the individuals who have recovered from the disease through treatment are not immune to tuberculosis re-infection. While most features of the original model were kept, the model was modified to incorporate two control measures in the form of post-exposure tuberculosis prophylaxis for the treatment of latent individuals and tuberculosis therapeutics for the treatmentof individuals with active tuberculosis. Mathematical analysis of the modelwas done under the assumption that the two control measures are positiveconstants. The disease-free equilibrium point was locally asymptotically stable when the basic reproduction number was less than unity and unstable when this epidemic threshold exceeds unity. An optimal control problem was formulated and the necessary conditions for optimality were derived.The numerical results based on data from Port Elizabeth suggest that using both forms of control measures simultaneously is more effective in reducing the total number of infected individuals than applying single controls separately.
- Full Text:
- Date Issued: 2016
- Authors: Zembe, Pumelela Vincent
- Date: 2016
- Subjects: Tuberculosis -- South Africa -- Port Elizabeth -- Prevention Tuberculosis -- Mathematical models , Tuberculosis -- Case studies
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12823 , vital:27124
- Description: In this treatise a SEIR model for the transmission of tuberculosis was proposed. It assumes that the latent infected individuals progress to active tuberculosis through endogenous reactivation and exogenous re-infection and that the individuals who have recovered from the disease through treatment are not immune to tuberculosis re-infection. While most features of the original model were kept, the model was modified to incorporate two control measures in the form of post-exposure tuberculosis prophylaxis for the treatment of latent individuals and tuberculosis therapeutics for the treatmentof individuals with active tuberculosis. Mathematical analysis of the modelwas done under the assumption that the two control measures are positiveconstants. The disease-free equilibrium point was locally asymptotically stable when the basic reproduction number was less than unity and unstable when this epidemic threshold exceeds unity. An optimal control problem was formulated and the necessary conditions for optimality were derived.The numerical results based on data from Port Elizabeth suggest that using both forms of control measures simultaneously is more effective in reducing the total number of infected individuals than applying single controls separately.
- Full Text:
- Date Issued: 2016
Reactivity of Rhenium (iii) and Rhenium (V) with multidentate NN-and no-donor ligands
- Yumata, Nonzaliseko Christine
- Authors: Yumata, Nonzaliseko Christine
- Date: 2010
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10373 , http://hdl.handle.net/10948/1085 , Rhenium , Ligands
- Description: The reaction of the potentially tridentate Schiff-base chelate Hhaep [Haep = N’-(1- (2-hydroxyphenyl)ethylidene)benzohydrazide] with [ReCl3(benzil)(PPh3)] and trans-[ReOCl3(PPh3)2] produced the neutral oxorhenium(V) complexes cis- [ReOCl2(mep)] [Hmep = 2-(1-iminoethyl)phenol] and cis-[ReOCI2(meb)(PPh3)] [Hmeb = N’-(propan-2-ylidene)benzohydrazide] in ethanol and acetone respectively. In both reactions the Hhaep molecule cleaves to give different coordinated bidentate NO-donor chelates coordinated to the rhenium(V) centers. The X-ray studies reveal that mep is present as a bidentate, monoanionic Schiffbase coordinating through the neutral imino nitrogen and the deprotonated phenolate oxygen in cis-[ReOCl2(mep)]. The bond distances and angles in cis- [ReOCI2(meb)(PPh3)] confirm that meb coordinates to the metal in the enolate form. The distorted octahedral complex fac-[ReCl3(dpa)(PPh3)] was prepared by the reaction of trans-[ReCl3(MeCN)(PPh3)2] with a twofold molar excess of dpa in acetonitrile under a nitrogen atmosphere. The compound dpa.HCl.2H2O was obtained as a by-product in the reaction of dpa with trans-[ReCI3(MeCN)(PPh3)2] in acetonitrile. The reaction of trans-[ReCl3(MeCN)(PPh3)2] with a twofold molar excess of 6- amino-3-methyl-1-phenyl-4-azahept-2-ene-1-one (Hamp) in acetonitrile led to the isolation of cis-[ReCl2(bat)(PPh3)2]. On complexation to the metal center Hamp decomposed to give the coordinated benzoylacetone (bat). Bat is present as a monoanionic bidentate chelate. The complexes [ReVOCI(had)] and [ReIVCl(had)(PPh3)](ReO4) were prepared from the reaction of trans-[ReCl3(MeCN)(PPh3)2] with N,N-bis((2-hydroxybenzyl)-2- aminoethyl)dimethylamine (H2had) in ethanol under various reaction conditions. The treatment of [ReCl3(benzil)(PPh3)] with 2-[((2- pyridinylmethyl)amino)methyl]phenol (Hham) in a 2:1 molar ratio in acetonitrile led to the isolation of the hydrogen-bonded dimer [ReOCl2(ham)]2. The distorted octahedral complex [ReOCl(hap)] [H2hap = N,N-bis(2- hydroxybenzyl)aminomethylpyridine] was prepared from the reaction of trans- [ReCl3(MeCN)(PPh3)2] with a twofold molar excess of H2hap in acetonitrile. The X-ray crystal structure analysis shows that the chloride is coordinated trans to the tripodal tertiary amino nitrogen, with a phenolate oxygen trans to the oxo oxygen.
- Full Text:
- Date Issued: 2010
- Authors: Yumata, Nonzaliseko Christine
- Date: 2010
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10373 , http://hdl.handle.net/10948/1085 , Rhenium , Ligands
- Description: The reaction of the potentially tridentate Schiff-base chelate Hhaep [Haep = N’-(1- (2-hydroxyphenyl)ethylidene)benzohydrazide] with [ReCl3(benzil)(PPh3)] and trans-[ReOCl3(PPh3)2] produced the neutral oxorhenium(V) complexes cis- [ReOCl2(mep)] [Hmep = 2-(1-iminoethyl)phenol] and cis-[ReOCI2(meb)(PPh3)] [Hmeb = N’-(propan-2-ylidene)benzohydrazide] in ethanol and acetone respectively. In both reactions the Hhaep molecule cleaves to give different coordinated bidentate NO-donor chelates coordinated to the rhenium(V) centers. The X-ray studies reveal that mep is present as a bidentate, monoanionic Schiffbase coordinating through the neutral imino nitrogen and the deprotonated phenolate oxygen in cis-[ReOCl2(mep)]. The bond distances and angles in cis- [ReOCI2(meb)(PPh3)] confirm that meb coordinates to the metal in the enolate form. The distorted octahedral complex fac-[ReCl3(dpa)(PPh3)] was prepared by the reaction of trans-[ReCl3(MeCN)(PPh3)2] with a twofold molar excess of dpa in acetonitrile under a nitrogen atmosphere. The compound dpa.HCl.2H2O was obtained as a by-product in the reaction of dpa with trans-[ReCI3(MeCN)(PPh3)2] in acetonitrile. The reaction of trans-[ReCl3(MeCN)(PPh3)2] with a twofold molar excess of 6- amino-3-methyl-1-phenyl-4-azahept-2-ene-1-one (Hamp) in acetonitrile led to the isolation of cis-[ReCl2(bat)(PPh3)2]. On complexation to the metal center Hamp decomposed to give the coordinated benzoylacetone (bat). Bat is present as a monoanionic bidentate chelate. The complexes [ReVOCI(had)] and [ReIVCl(had)(PPh3)](ReO4) were prepared from the reaction of trans-[ReCl3(MeCN)(PPh3)2] with N,N-bis((2-hydroxybenzyl)-2- aminoethyl)dimethylamine (H2had) in ethanol under various reaction conditions. The treatment of [ReCl3(benzil)(PPh3)] with 2-[((2- pyridinylmethyl)amino)methyl]phenol (Hham) in a 2:1 molar ratio in acetonitrile led to the isolation of the hydrogen-bonded dimer [ReOCl2(ham)]2. The distorted octahedral complex [ReOCl(hap)] [H2hap = N,N-bis(2- hydroxybenzyl)aminomethylpyridine] was prepared from the reaction of trans- [ReCl3(MeCN)(PPh3)2] with a twofold molar excess of H2hap in acetonitrile. The X-ray crystal structure analysis shows that the chloride is coordinated trans to the tripodal tertiary amino nitrogen, with a phenolate oxygen trans to the oxo oxygen.
- Full Text:
- Date Issued: 2010
Examining the influence of extrinsic factors on herbivore assemblage composition in a southern African savanna
- Young, Cyanne, Smithwick, Erica
- Authors: Young, Cyanne , Smithwick, Erica
- Date: 2019
- Subjects: Herbivores -- Ecology , Ungulates -- Ecology Mammal populations -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44334 , vital:37154
- Description: Globally, herbivore populations have become threatened by the effects of a growing human population. This has resulted in over-hunting, habitat encroachment, fragmentation and degradation and competition leading to the replacement of wild herbivore populations with livestock. African herbivores, in particular, have experienced a severe decline in abundance and distribution, and vast conservation management efforts are underway to preserve herbivore populations and promote their growth. However, conservation management efforts sometimes have unintended consequences on the abundance and distribution of herbivores as a result of the complex interactions they have with their ecosystem. The aim of this study was to: 1) examine the drivers of herbivore distribution at the Satara section of Kruger National Park (hereafter ‘KNP’) at a landscape scale, to determine assemblage composition under the constraints of different environmental attributes; and 2) examine feeding selection by grazing herbivores of different morpho-physiological characteristics at a patch scale of differing environmental attributes. To achieve this, thirty-six experimental plots were established at three distances from water at Satara, and manipulated by mowing, mowing and fertilising or fertilising only over the course of a year, to account for seasonal effects. Each plot was fitted with a camera trap which ran for five weeks in each sampling season, and the data collected focussed on eleven herbivore species of differing body size, digestive strategy and feeding preference. These species were selected due to their abundance at Satara, and their representation of a variety of morpho-physiological characteristics. To achieve both aims, generalised linear models were used to determine the probability of occurrence of a functional type (for aim 1- Chapter 3), and individual species (for aim 2- Chapter 4). To construct the generalised linear models for Chapter 3, hypotheses about species’ relative distribution and abundance were developed through a literature review of forage and water availability constraints on feeding preference and body size of herbivore biomass at a landscape scale. I expected strong seasonal relationships between vegetation biomass and quality, and biomass of water-dependent herbivores with increasing distance to water. My analyses of herbivore distribution across the region confirmed broad-scale descriptions of interactions between forage requirements and water availability, across a set of species which differ in functional traits, at a landscape scale. In Chapter 4, trends in probability of occurrence by seven grazing herbivore species were determined using camera trap data at a patch scale. My results showed that season was a major determinant of species distribution, especially those which are not obligate grazers or feed exclusively in the 0.5 km to 2 km zone from water. I found that most selective feeding occurred in the late wet season when water would be more evenly distributed across the landscape and forage resources close to water would have had the chance to recover from depletion as a result of dry season use. The collective efforts of this study show that distance from water was a critical determinant of herbivore distribution across the landscape, and that forage utilisation by small mixed-feeders and large grazers in particular, altered significantly across seasons. This has important implications for the provision of artificial water, given that foraging pressure is increased closer to water. Landscape heterogeneity needs to be maintained through efficient water provision, to allow areas of forage reserve to maintained in the dry season, where species are constrained by water availability and forage quality and quantity.
- Full Text:
- Date Issued: 2019
- Authors: Young, Cyanne , Smithwick, Erica
- Date: 2019
- Subjects: Herbivores -- Ecology , Ungulates -- Ecology Mammal populations -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44334 , vital:37154
- Description: Globally, herbivore populations have become threatened by the effects of a growing human population. This has resulted in over-hunting, habitat encroachment, fragmentation and degradation and competition leading to the replacement of wild herbivore populations with livestock. African herbivores, in particular, have experienced a severe decline in abundance and distribution, and vast conservation management efforts are underway to preserve herbivore populations and promote their growth. However, conservation management efforts sometimes have unintended consequences on the abundance and distribution of herbivores as a result of the complex interactions they have with their ecosystem. The aim of this study was to: 1) examine the drivers of herbivore distribution at the Satara section of Kruger National Park (hereafter ‘KNP’) at a landscape scale, to determine assemblage composition under the constraints of different environmental attributes; and 2) examine feeding selection by grazing herbivores of different morpho-physiological characteristics at a patch scale of differing environmental attributes. To achieve this, thirty-six experimental plots were established at three distances from water at Satara, and manipulated by mowing, mowing and fertilising or fertilising only over the course of a year, to account for seasonal effects. Each plot was fitted with a camera trap which ran for five weeks in each sampling season, and the data collected focussed on eleven herbivore species of differing body size, digestive strategy and feeding preference. These species were selected due to their abundance at Satara, and their representation of a variety of morpho-physiological characteristics. To achieve both aims, generalised linear models were used to determine the probability of occurrence of a functional type (for aim 1- Chapter 3), and individual species (for aim 2- Chapter 4). To construct the generalised linear models for Chapter 3, hypotheses about species’ relative distribution and abundance were developed through a literature review of forage and water availability constraints on feeding preference and body size of herbivore biomass at a landscape scale. I expected strong seasonal relationships between vegetation biomass and quality, and biomass of water-dependent herbivores with increasing distance to water. My analyses of herbivore distribution across the region confirmed broad-scale descriptions of interactions between forage requirements and water availability, across a set of species which differ in functional traits, at a landscape scale. In Chapter 4, trends in probability of occurrence by seven grazing herbivore species were determined using camera trap data at a patch scale. My results showed that season was a major determinant of species distribution, especially those which are not obligate grazers or feed exclusively in the 0.5 km to 2 km zone from water. I found that most selective feeding occurred in the late wet season when water would be more evenly distributed across the landscape and forage resources close to water would have had the chance to recover from depletion as a result of dry season use. The collective efforts of this study show that distance from water was a critical determinant of herbivore distribution across the landscape, and that forage utilisation by small mixed-feeders and large grazers in particular, altered significantly across seasons. This has important implications for the provision of artificial water, given that foraging pressure is increased closer to water. Landscape heterogeneity needs to be maintained through efficient water provision, to allow areas of forage reserve to maintained in the dry season, where species are constrained by water availability and forage quality and quantity.
- Full Text:
- Date Issued: 2019
Ecosystem health of the Nelson Mandela Bay sandy beaches
- Authors: Yani, Vuyolwethu Veronica
- Date: 2009
- Subjects: Seashore ecology -- South Africa -- Eastern Cape , Sand dune ecology -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape , Beaches -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10600 , http://hdl.handle.net/10948/1075 , Seashore ecology -- South Africa -- Eastern Cape , Sand dune ecology -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape , Beaches -- South Africa -- Eastern Cape
- Description: An investigation of ecosystem functioning of sandy beaches in the Nelson Mandela Bay Municipality (NMBM) was carried out with the aim of describing their type and pollution status. Water salinity, temperature, pH, beach slope, water inorganic nutrient concentrations, urea, and chlorophyll-a concentration as well as the composition of zooplankton, phytoplankton, meiofauna, benthic microalgae and bacteria were examined at thirteen beaches. The beaches were classified into three types: short beaches; long beaches with surf diatoms; and long beaches that import biomass (without surf diatoms). Of the thirteen beaches, five were non-polluted and eight polluted with polluting human activities in and around them. Most beaches were dominated by fine sand except for St. Georges Strand where the particles were medium to fine sand and Maitland’s River Beach, Bluewater Bay and Sardinia Bay that had coarse sand. Nutrient concentrations ranged from 1.98 ± 0.10 μM to 19.30 ± 3.02 μM nitrate; 4.88 ± 1.00 μM to 11.97 ± 1.00 μM ammonium; 0.67 ± 0.00 μM to 2.31 ±1.00 μM soluble reactive phosphorus; and 0.00 to 0.03 ± 0.00 μg l-1 urea-N. Chlorophyll-a concentrations ranged from 0.04 ± 0.02 to 1.57 ± 0.11 μg l-1. Chlorophyll-a concentrations were negatively correlated to ammonium for all beach types (short beaches: r = 0.94; long importing beaches: r = 0.95 and surf diatom beaches: 0.94) and to nitrate for short and long importing beaches (short: r = 0.97 and long importing: r = 0.85). By contrast, a positive correlation was found between observed between chlorophyll-a concentrations and urea for surf diatom beaches (r = 0.93) and for long importing beaches (r = 0.73). Chlorophyll-a concentrations were negatively correlated to short beaches (r = 0.99) and long importing beaches (r = 0.76). The E. coli and total coliforms in all the sampled beaches were within the recommended South African water quality guidelines for contact recreation as specified by DWAF (1995) except at New Brighton Beach (2 419 total coliforms/100 ml and 1 853 E. coli cells/100 ml) and St. Georges Strand (274 total coliforms/100 ml). Diatoms dominated the phytoplankton and benthic microflora; calanoid copepods dominated the zooplankton and deposit-feeding nematodes dominated the meiofauna in all the beaches with no changes found at polluted beaches.
- Full Text: false
- Date Issued: 2009
- Authors: Yani, Vuyolwethu Veronica
- Date: 2009
- Subjects: Seashore ecology -- South Africa -- Eastern Cape , Sand dune ecology -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape , Beaches -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10600 , http://hdl.handle.net/10948/1075 , Seashore ecology -- South Africa -- Eastern Cape , Sand dune ecology -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape , Beaches -- South Africa -- Eastern Cape
- Description: An investigation of ecosystem functioning of sandy beaches in the Nelson Mandela Bay Municipality (NMBM) was carried out with the aim of describing their type and pollution status. Water salinity, temperature, pH, beach slope, water inorganic nutrient concentrations, urea, and chlorophyll-a concentration as well as the composition of zooplankton, phytoplankton, meiofauna, benthic microalgae and bacteria were examined at thirteen beaches. The beaches were classified into three types: short beaches; long beaches with surf diatoms; and long beaches that import biomass (without surf diatoms). Of the thirteen beaches, five were non-polluted and eight polluted with polluting human activities in and around them. Most beaches were dominated by fine sand except for St. Georges Strand where the particles were medium to fine sand and Maitland’s River Beach, Bluewater Bay and Sardinia Bay that had coarse sand. Nutrient concentrations ranged from 1.98 ± 0.10 μM to 19.30 ± 3.02 μM nitrate; 4.88 ± 1.00 μM to 11.97 ± 1.00 μM ammonium; 0.67 ± 0.00 μM to 2.31 ±1.00 μM soluble reactive phosphorus; and 0.00 to 0.03 ± 0.00 μg l-1 urea-N. Chlorophyll-a concentrations ranged from 0.04 ± 0.02 to 1.57 ± 0.11 μg l-1. Chlorophyll-a concentrations were negatively correlated to ammonium for all beach types (short beaches: r = 0.94; long importing beaches: r = 0.95 and surf diatom beaches: 0.94) and to nitrate for short and long importing beaches (short: r = 0.97 and long importing: r = 0.85). By contrast, a positive correlation was found between observed between chlorophyll-a concentrations and urea for surf diatom beaches (r = 0.93) and for long importing beaches (r = 0.73). Chlorophyll-a concentrations were negatively correlated to short beaches (r = 0.99) and long importing beaches (r = 0.76). The E. coli and total coliforms in all the sampled beaches were within the recommended South African water quality guidelines for contact recreation as specified by DWAF (1995) except at New Brighton Beach (2 419 total coliforms/100 ml and 1 853 E. coli cells/100 ml) and St. Georges Strand (274 total coliforms/100 ml). Diatoms dominated the phytoplankton and benthic microflora; calanoid copepods dominated the zooplankton and deposit-feeding nematodes dominated the meiofauna in all the beaches with no changes found at polluted beaches.
- Full Text: false
- Date Issued: 2009
Synthesis of folate-conjugated palladium nanoparticles
- Authors: Xolo, Luthando
- Date: 2018
- Subjects: Nanotechnology , Nanostructured materials Complex compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/36442 , vital:33943
- Description: In this study, the synthesis of two new folate-conjugated palladium (Pd) nanoparticles was carried out. This was done via two steps; firstly, the synthesis of palladium nanoparticles (PdNPs) capped with 4-aminothiophenol (4-Atp) and secondly, they were conjugated to the folate to form Folate-4Atp-PdNPs. All the above were characterized by using Fourier Transform Infrared spectroscopy (FTIR) which confirmed the formation of the targeted product (PdNPs-4-Atp-folate) as well as the 2-Aet linked with folate product (2-Aet-folate). The optical properties of the products formed were characterized further by using UV-Vis spectroscopy and Photoluminescence (PL). The size and shape of the nanoparticles were obtained by Transmission Electron Microscopy (TEM). The FTIR confirmed the formation of desired nanoparticles (Fa-4Atp-PdNPs), with peak of C=O stretching vibration at 1659 cm-1. The UV-Vis showed absorption peaks at 236 nm and 285 nm which was due to n-π* and π-π* transitions. The nanoparticles also showed excitation and emission peaks at 360 nm and 455 nm from the PL when excitation wavelength was set at 270 nm. The methanol soluble nanoparticles had an average size of 36 nm while the water-soluble nanoparticles were 4 nm in size. The HRTEM also showed the methanol nanoparticles were amorphous while the water-soluble nanoparticles were crystalline. The work reports on comparison of the methanol-soluble and water-soluble nanoparticles size distribution and the effect of capping agent used on the nanoparticles.
- Full Text:
- Date Issued: 2018
- Authors: Xolo, Luthando
- Date: 2018
- Subjects: Nanotechnology , Nanostructured materials Complex compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/36442 , vital:33943
- Description: In this study, the synthesis of two new folate-conjugated palladium (Pd) nanoparticles was carried out. This was done via two steps; firstly, the synthesis of palladium nanoparticles (PdNPs) capped with 4-aminothiophenol (4-Atp) and secondly, they were conjugated to the folate to form Folate-4Atp-PdNPs. All the above were characterized by using Fourier Transform Infrared spectroscopy (FTIR) which confirmed the formation of the targeted product (PdNPs-4-Atp-folate) as well as the 2-Aet linked with folate product (2-Aet-folate). The optical properties of the products formed were characterized further by using UV-Vis spectroscopy and Photoluminescence (PL). The size and shape of the nanoparticles were obtained by Transmission Electron Microscopy (TEM). The FTIR confirmed the formation of desired nanoparticles (Fa-4Atp-PdNPs), with peak of C=O stretching vibration at 1659 cm-1. The UV-Vis showed absorption peaks at 236 nm and 285 nm which was due to n-π* and π-π* transitions. The nanoparticles also showed excitation and emission peaks at 360 nm and 455 nm from the PL when excitation wavelength was set at 270 nm. The methanol soluble nanoparticles had an average size of 36 nm while the water-soluble nanoparticles were 4 nm in size. The HRTEM also showed the methanol nanoparticles were amorphous while the water-soluble nanoparticles were crystalline. The work reports on comparison of the methanol-soluble and water-soluble nanoparticles size distribution and the effect of capping agent used on the nanoparticles.
- Full Text:
- Date Issued: 2018
Assessing in-vivo clearance of colorectal cancer-targeting peptide-functionalized gold nanoparticles
- Authors: Xakaza, Hlumisa Belinda
- Date: 2019
- Subjects: Nanoparticles , Gold Nanotechnology -- Health aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44323 , vital:37153
- Description: Colorectal cancer (CRC) is a major public health problem. Gold nanoparticles (AuNPs) have been proved as a possible diagnostic tool to target CRC by peptides conjugated to gold nanoparticles (p-AuNP). According to previous reports, AuNPs accumulate in internal organs and have raised serious concerns on toxicity and safety. Understanding their fate in the body and the physiology underlying their clearance is crucial for toxicological evaluation and clinical translations. Six groups of rats were intravenously injected with a single dose of 100μg/kg body weight of citrate-capped (c.c-AuNPs), PEG-coated (PEG-AuNPs), and peptide functionalized gold nanoparticles (p.L-AuNPs, p.C-AuNPs, and p.14-AuNPs), to assess their physiologic clearance over a short-term (over sequential time-points: day 1, 3, 5, 7 and 14) and long-term period (three months). The inductively coupled optical-electron spectrometry (ICP-OES) showed accumulated c.c-AuNPs in the liver tissue. Moreover, a rapid and decreasing pattern of concentration of AuNPs was observed in urine and feces, with total excretion at day 7. Elevated levels of urine urea nitrogen (UUN) and urine creatinine (UCREA) reported an impaired kidney function for the c.c-AuNP group, while H&E staining indicated chronic progressive nephropathy (CPN) in all groups, 3 months post-injection, which is in all probability related to aging. Signs of inflammation were observed in rats treated with c.c-AuNPs, 2 weeks post-injection. The overall findings showed that the clearance of c.c-AuNPs’ clearance is compromised, which can have side-effects, while the excretion profiles of the p-AuNPs were consistent with the reducing long-term retention in the excretory organs. The p-AuNPs were found to be non-toxic and therefore show promise for CRC diagnostics and therapeutic purposes.
- Full Text:
- Date Issued: 2019
Assessing in-vivo clearance of colorectal cancer-targeting peptide-functionalized gold nanoparticles
- Authors: Xakaza, Hlumisa Belinda
- Date: 2019
- Subjects: Nanoparticles , Gold Nanotechnology -- Health aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44323 , vital:37153
- Description: Colorectal cancer (CRC) is a major public health problem. Gold nanoparticles (AuNPs) have been proved as a possible diagnostic tool to target CRC by peptides conjugated to gold nanoparticles (p-AuNP). According to previous reports, AuNPs accumulate in internal organs and have raised serious concerns on toxicity and safety. Understanding their fate in the body and the physiology underlying their clearance is crucial for toxicological evaluation and clinical translations. Six groups of rats were intravenously injected with a single dose of 100μg/kg body weight of citrate-capped (c.c-AuNPs), PEG-coated (PEG-AuNPs), and peptide functionalized gold nanoparticles (p.L-AuNPs, p.C-AuNPs, and p.14-AuNPs), to assess their physiologic clearance over a short-term (over sequential time-points: day 1, 3, 5, 7 and 14) and long-term period (three months). The inductively coupled optical-electron spectrometry (ICP-OES) showed accumulated c.c-AuNPs in the liver tissue. Moreover, a rapid and decreasing pattern of concentration of AuNPs was observed in urine and feces, with total excretion at day 7. Elevated levels of urine urea nitrogen (UUN) and urine creatinine (UCREA) reported an impaired kidney function for the c.c-AuNP group, while H&E staining indicated chronic progressive nephropathy (CPN) in all groups, 3 months post-injection, which is in all probability related to aging. Signs of inflammation were observed in rats treated with c.c-AuNPs, 2 weeks post-injection. The overall findings showed that the clearance of c.c-AuNPs’ clearance is compromised, which can have side-effects, while the excretion profiles of the p-AuNPs were consistent with the reducing long-term retention in the excretory organs. The p-AuNPs were found to be non-toxic and therefore show promise for CRC diagnostics and therapeutic purposes.
- Full Text:
- Date Issued: 2019
The influence of nutrients on surf-zone phytoplankton
- Authors: Wolmarans, Karien
- Date: 2012
- Subjects: Phytoplankton , Algal blooms , Diatoms
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10608 , http://hdl.handle.net/10948/d1008080 , Phytoplankton , Algal blooms , Diatoms
- Description: The variability in surf-zone phytoplankton community composition together with variability in nutrient concentrations was studied at seven beaches along the coast near Port Elizabeth, South Africa over a one-year sampling period. The nutrient requirements of selected diatoms and dinoflagellates that co-occur at these beaches were studied. The highest nutrient concentrations were recorded at Brighton beach, with phosphate concentration being substantially higher than standards set out for both South African and European waters. Nitrate, ammonium and silicate concentrations were consistent (low variability) at all beaches. The species composition of beaches without surf diatoms was also not variable (except for King’s Beach – an artificial beach). Maitland beach was the only beach that could be identified as a surf diatom beach due to the presence of Anaulus australis. The surf diatom Anaulus australis was found to be a superior competitor compared to all other species tested: the other surf diatom Asterionellopsis glacialis, and the dinoflagellates Gonyaulax spinifera, Prorocentrum micans, and Scrippsiella trochoidea. Gonyaulax spinifera could possibly outcompete Anaulus australis in systems should nitrate become limiting.
- Full Text:
- Date Issued: 2012
- Authors: Wolmarans, Karien
- Date: 2012
- Subjects: Phytoplankton , Algal blooms , Diatoms
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10608 , http://hdl.handle.net/10948/d1008080 , Phytoplankton , Algal blooms , Diatoms
- Description: The variability in surf-zone phytoplankton community composition together with variability in nutrient concentrations was studied at seven beaches along the coast near Port Elizabeth, South Africa over a one-year sampling period. The nutrient requirements of selected diatoms and dinoflagellates that co-occur at these beaches were studied. The highest nutrient concentrations were recorded at Brighton beach, with phosphate concentration being substantially higher than standards set out for both South African and European waters. Nitrate, ammonium and silicate concentrations were consistent (low variability) at all beaches. The species composition of beaches without surf diatoms was also not variable (except for King’s Beach – an artificial beach). Maitland beach was the only beach that could be identified as a surf diatom beach due to the presence of Anaulus australis. The surf diatom Anaulus australis was found to be a superior competitor compared to all other species tested: the other surf diatom Asterionellopsis glacialis, and the dinoflagellates Gonyaulax spinifera, Prorocentrum micans, and Scrippsiella trochoidea. Gonyaulax spinifera could possibly outcompete Anaulus australis in systems should nitrate become limiting.
- Full Text:
- Date Issued: 2012
Benthic algal communities of shallow reefs in the Eastern Cape: availability of abalone habitat
- Authors: Witte, Andrew Dennis
- Date: 2017
- Subjects: Reef ecology -- South Africa -- Eastern Cape Abalone fisheries -- Habitat -- South Africa -- Eastern Cape , Algal communities -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12032 , vital:27021
- Description: Marine ranching has been identified as an alternative to traditional aquacultural rearing and growing organisms for consumption. In the Eastern Cape, abalone ranching is a new and experimental industry. The aims of the research were to: first develop a GIS model to assist management in site selection for abalone seeding; and secondly to develop and standardize the sampling methodology in order to ground truth the sites, and assist in the monitoring and habitat identification of abalone. The GIS model developed in Chapter 3 was created using an unsupervised classification and fuzzy logic approach. Both vector and raster datasets were utilized to represent 7 different layers. Predominantly satellite imagery was used to classify the different substrate groups according to pixel colour signatures. The basic process was to apply a fuzzy rule set (membership) to rasters which gave an output raster (Fuzzification). The membership output rasters were overlaid which creates a single model output. It was found that model accuracy increased significantly as more layers were overlaid, due to the high variability within each of the individual layers. Model ground-truthing showed a strong and significant correlation (r2 = 0.91; p < 0.001) between the model outputs and actual site suitability based on in situ evaluation. Chapter 4 describes the investigation towards the optimal sampling methods for abalone ranching habitat assessments. Both destructive sampling methods and imagery methods were considered as methods of data collection. The study also evaluated whether quadrat and transects were going to be suitable methods to assess sites, and what size or length respectively they should be to collect the appropriate data. Transect length showed great variation according to the factor assessed. A transect of 15 metres was found to be optimal. Abalone counts showed no significant (p = 0.1) change in the Coefficent of Variance (CV) for transect lengths greater than 15m, and had a mean of 0.2 abalone per metre. Quadrat size showed a significant difference in functional group richness between quadrat sizes of 0.0625m2, and 0.25m2 but no difference between 0.25m2 and 1m2 quadrats for both scape and photographic quadrats. It was also found that between 5 and 10 replicates (p = 0.08) represents the functional groups appropriately using quadrats and that a 0.25m2 quadrat is most suitable for sampling. Chapter 5 describes the benthic community structure of Cape Recife shallow water reefs. Using the standardized methodology previously mentioned, 45 sites were assessed to identify the community structure. These sites were grouped into 5 different groups influenced by depth and substrate, as well as functional group composition according to a Wards classification. The community structure showed that depth and substrate play a significant role (p < 0.05) in the community type. There is also a significant relationship (p < 0.05) between complexity, rugosity, abalone presence and substrate. During this study the basic protocols for site selection and benthic community monitoring have been developed to support the abalone ranching initiative in the Cape Recife area. It has also provided a baseline of the benthic community in the ranching concession area which will be used as a benchmark for future monitoring efforts. The site selection, sampling, and monitoring methods developed during the course of this work have now been rolled out as Standard Operating Procedures for the ranching programme in this area.
- Full Text:
- Date Issued: 2017
- Authors: Witte, Andrew Dennis
- Date: 2017
- Subjects: Reef ecology -- South Africa -- Eastern Cape Abalone fisheries -- Habitat -- South Africa -- Eastern Cape , Algal communities -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12032 , vital:27021
- Description: Marine ranching has been identified as an alternative to traditional aquacultural rearing and growing organisms for consumption. In the Eastern Cape, abalone ranching is a new and experimental industry. The aims of the research were to: first develop a GIS model to assist management in site selection for abalone seeding; and secondly to develop and standardize the sampling methodology in order to ground truth the sites, and assist in the monitoring and habitat identification of abalone. The GIS model developed in Chapter 3 was created using an unsupervised classification and fuzzy logic approach. Both vector and raster datasets were utilized to represent 7 different layers. Predominantly satellite imagery was used to classify the different substrate groups according to pixel colour signatures. The basic process was to apply a fuzzy rule set (membership) to rasters which gave an output raster (Fuzzification). The membership output rasters were overlaid which creates a single model output. It was found that model accuracy increased significantly as more layers were overlaid, due to the high variability within each of the individual layers. Model ground-truthing showed a strong and significant correlation (r2 = 0.91; p < 0.001) between the model outputs and actual site suitability based on in situ evaluation. Chapter 4 describes the investigation towards the optimal sampling methods for abalone ranching habitat assessments. Both destructive sampling methods and imagery methods were considered as methods of data collection. The study also evaluated whether quadrat and transects were going to be suitable methods to assess sites, and what size or length respectively they should be to collect the appropriate data. Transect length showed great variation according to the factor assessed. A transect of 15 metres was found to be optimal. Abalone counts showed no significant (p = 0.1) change in the Coefficent of Variance (CV) for transect lengths greater than 15m, and had a mean of 0.2 abalone per metre. Quadrat size showed a significant difference in functional group richness between quadrat sizes of 0.0625m2, and 0.25m2 but no difference between 0.25m2 and 1m2 quadrats for both scape and photographic quadrats. It was also found that between 5 and 10 replicates (p = 0.08) represents the functional groups appropriately using quadrats and that a 0.25m2 quadrat is most suitable for sampling. Chapter 5 describes the benthic community structure of Cape Recife shallow water reefs. Using the standardized methodology previously mentioned, 45 sites were assessed to identify the community structure. These sites were grouped into 5 different groups influenced by depth and substrate, as well as functional group composition according to a Wards classification. The community structure showed that depth and substrate play a significant role (p < 0.05) in the community type. There is also a significant relationship (p < 0.05) between complexity, rugosity, abalone presence and substrate. During this study the basic protocols for site selection and benthic community monitoring have been developed to support the abalone ranching initiative in the Cape Recife area. It has also provided a baseline of the benthic community in the ranching concession area which will be used as a benchmark for future monitoring efforts. The site selection, sampling, and monitoring methods developed during the course of this work have now been rolled out as Standard Operating Procedures for the ranching programme in this area.
- Full Text:
- Date Issued: 2017
Exploring the influence of management practice on mesopredator and herbivore occupancy and interactions
- Authors: Winterton, Deborah Jean
- Date: 2019
- Subjects: Herbivores -- Habitat -- Conservation , Herbivores -- Habitat Herbivores -- Conservation Herbivores -- Ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44368 , vital:37159
- Description: Ecological studies need to consider ecological interactions between species and their environment across trophic levels. This complexity not only makes the study of ecology very challenging but it also means that ecosystems are vulnerable to change as a disruption at any of the levels could result in cascading effects through the hierarchy. This sensitivity to change makes it especially important to understand ecosystem function as this is needed for effective and adaptive conservation management. A key way in which humans drive and change ecosystem function is through land use and associated management practice. A primary objective of many protected areas is restoration of natural function through re-introduction of large ungulates, which are often fenced and small, thus requiring intensive management that can influence ecosystem function. This is true of the West Coast National Park (the park). Small antelope abundance, and associated drivers, in the contractual Postberg section of the park have been a long-term management question. Postberg is a small (1800 ha) fenced and isolated section of the park which was historically used for agriculture (livestock grazing and some cultivation) and later large wild ungulate species were re-introduced and kept at high densities. The perception of a lower abundance of small antelope has been attributed to predation by a mesopredator (Caracal caracal), however interspecific competition and habitat quality is also known to influence species abundance. Therefore, I aimed to explore the potential mechanisms of small antelope occurrence in the region and how this might differ across three sites with different management practices. Using 18 camera traps, I documented the occurrence of small, medium and large ungulates and caracal. My study spanned across three areas that each represented different forms of management practice with regards to fencing, and stocking rates of managed ungulate species. I made use of single-season, single-species occupancy models in R to assess occupancy of small antelope and caracal and I used the abundance induced heterogeneity model to estimate abundance of managed ungulates. I employed the single-season, two-species occupancy model in PRESENCE to explore species co-occurrence and interactions. Activity patterns and temporal overlap between managed ungulates, small antelope and caracal were assessed using the overlap and activity packages in R. Vegetation height appears to be an important driver of common duiker occupancy. Fallow lands were strongly favoured by managed ungulates suggesting that they may be utilising these patches for foraging. Small antelope occupancy was highest outside of the park and caracal detections were lowest outside of the park. The low detection of caracal across all areas, along with the known diet of caracals, suggests that predation is not likely the driver of small antelope occurrence. Our data suggest that co-occurrence between small antelope and managed ungulates is high and that these sympatric species have probably partitioned food resources. I found that small antelope were mostly crepuscular, managed ungulates more diurnal while caracal were primarily nocturnal. There was a high overlap between small antelope and managed ungulate activity while overlap between caracal and small antelope indicates some temporal partitioning. Overall I found some effects of inter-specific interactions at the local scale. There was, however, no consistent pattern across the areas which, in line with literature, suggests large scale ecological trends are difficult to detect at local scales. Due to the heterogeneity of the region’s vegetation, coupled with the small size of the biome and extensive fragmentation by land use, there are few areas which adequately represent the biome to test how large ungulates would utilise the area at a large scale. This has important implications for the management of small protected areas in the region who are mandated to restore these areas to their historical and natural function. The ability of conservation managers to meet objectives of restoring parks to their historical function, and maintaining these systems as such, may be questioned if our protected areas are not meeting the spatial requirements of re-introduced species.
- Full Text:
- Date Issued: 2019
- Authors: Winterton, Deborah Jean
- Date: 2019
- Subjects: Herbivores -- Habitat -- Conservation , Herbivores -- Habitat Herbivores -- Conservation Herbivores -- Ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/44368 , vital:37159
- Description: Ecological studies need to consider ecological interactions between species and their environment across trophic levels. This complexity not only makes the study of ecology very challenging but it also means that ecosystems are vulnerable to change as a disruption at any of the levels could result in cascading effects through the hierarchy. This sensitivity to change makes it especially important to understand ecosystem function as this is needed for effective and adaptive conservation management. A key way in which humans drive and change ecosystem function is through land use and associated management practice. A primary objective of many protected areas is restoration of natural function through re-introduction of large ungulates, which are often fenced and small, thus requiring intensive management that can influence ecosystem function. This is true of the West Coast National Park (the park). Small antelope abundance, and associated drivers, in the contractual Postberg section of the park have been a long-term management question. Postberg is a small (1800 ha) fenced and isolated section of the park which was historically used for agriculture (livestock grazing and some cultivation) and later large wild ungulate species were re-introduced and kept at high densities. The perception of a lower abundance of small antelope has been attributed to predation by a mesopredator (Caracal caracal), however interspecific competition and habitat quality is also known to influence species abundance. Therefore, I aimed to explore the potential mechanisms of small antelope occurrence in the region and how this might differ across three sites with different management practices. Using 18 camera traps, I documented the occurrence of small, medium and large ungulates and caracal. My study spanned across three areas that each represented different forms of management practice with regards to fencing, and stocking rates of managed ungulate species. I made use of single-season, single-species occupancy models in R to assess occupancy of small antelope and caracal and I used the abundance induced heterogeneity model to estimate abundance of managed ungulates. I employed the single-season, two-species occupancy model in PRESENCE to explore species co-occurrence and interactions. Activity patterns and temporal overlap between managed ungulates, small antelope and caracal were assessed using the overlap and activity packages in R. Vegetation height appears to be an important driver of common duiker occupancy. Fallow lands were strongly favoured by managed ungulates suggesting that they may be utilising these patches for foraging. Small antelope occupancy was highest outside of the park and caracal detections were lowest outside of the park. The low detection of caracal across all areas, along with the known diet of caracals, suggests that predation is not likely the driver of small antelope occurrence. Our data suggest that co-occurrence between small antelope and managed ungulates is high and that these sympatric species have probably partitioned food resources. I found that small antelope were mostly crepuscular, managed ungulates more diurnal while caracal were primarily nocturnal. There was a high overlap between small antelope and managed ungulate activity while overlap between caracal and small antelope indicates some temporal partitioning. Overall I found some effects of inter-specific interactions at the local scale. There was, however, no consistent pattern across the areas which, in line with literature, suggests large scale ecological trends are difficult to detect at local scales. Due to the heterogeneity of the region’s vegetation, coupled with the small size of the biome and extensive fragmentation by land use, there are few areas which adequately represent the biome to test how large ungulates would utilise the area at a large scale. This has important implications for the management of small protected areas in the region who are mandated to restore these areas to their historical and natural function. The ability of conservation managers to meet objectives of restoring parks to their historical function, and maintaining these systems as such, may be questioned if our protected areas are not meeting the spatial requirements of re-introduced species.
- Full Text:
- Date Issued: 2019
Optimisation of an in vitro model for anti-diabetic screening
- Authors: Wilson, Gayle Pamela
- Date: 2006
- Subjects: Hypoglycemic agents , Diabetes -- Treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10308 , http://hdl.handle.net/10948/428 , Hypoglycemic agents , Diabetes -- Treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: The need for alternative strategies for the prevention and treatment of diabetes is growing rapidly as type II diabetes is reaching epidemic status in our society. This need was the basis for the creation of this study, as it was necessary to start looking towards medicinal plants as potential antidiabetic treatment and no comprehensive in vitro model existed. In creating a model for determining the effects of alternative traditional medicines as antidiabetic potentiates, it was necessary that two metabolic pathways, namely glucose uptake and insulin secretion, which play a significant role in glucose homeostasis, be at the centre of our investigations. The objective of this project was to optimize the methodology required to screen and ultimately determine the effectiveness of the plant extracts Kankerbos and MRC2003, as antidiabetic potentiates, through observing their effects on glucose utilisation and insulin secretion. If these medicinal plants are going to make a positive contribution to the health of type II diabetic South Africans, then the determination of their efficacy is essential. The cell lines used in this study included 3T3-L1 preadipocytes, Chang liver, C2C12 muscle and INS-1 rat pancreatic cells. Each cell line represents a different in vivo organ that is known to have an influence on glucose homeostasis in our bodies, each with its own unique metabolic pathways and mechanisms of activity, thereby making each one a vital component in the study. The positive controls for the two models were insulin and metformin (glucose utilisation) and glibenclamide (insulin secretion). Insulin was shown to provide a significant increase in the amount of glucose taken up in C2C12 muscle and Chang liver cells for acute conditions. Chronic treatments with metformin provided a significant increase in glucose utilised by Chang liver cells. Glibenclamide was an effective positive control for stimulating insulin secretion by INS-1 cells under acute conditions as there was a significant increase in the amount of insulin secreted. MRC2003 did not show any significant antidiabetic activity. Sutherlandia frutescens (Kankerbos) showed biological activities comparable to some of the more recognized antidiabetic compounds throughout the study. With regards to the glucose utilisation model, Kankerbos was seen to have both acute and chronic effects in different cell lines. In the C2C12 muscle cell line, Kankerbos significantly increased glucose uptake when they were exposed to acute conditions. Kankerbos also had a significant effect on the Chang liver cells as it was observed that under both acute and chronic conditions, this plant extract induced the uptake of glucose into these cells. With respect to the insulin secretion model involving INS-1 cells, no significant effect was seen during acute exposure with Kankerbos treatment. However during chronic exposure, an increase in insulin secretion was initiated by this plant extract. Overall, the results of this study suggest that Kankerbos has a twofold mechanism of action for its glucose-lowering effects. Given that Kankerbos is widely available in South Africa, this study was valuable as it provided an indication that Kankerbos has antidiabetic activities and could possibly be used as an alternative antidiabetic medication.
- Full Text:
- Date Issued: 2006
- Authors: Wilson, Gayle Pamela
- Date: 2006
- Subjects: Hypoglycemic agents , Diabetes -- Treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10308 , http://hdl.handle.net/10948/428 , Hypoglycemic agents , Diabetes -- Treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: The need for alternative strategies for the prevention and treatment of diabetes is growing rapidly as type II diabetes is reaching epidemic status in our society. This need was the basis for the creation of this study, as it was necessary to start looking towards medicinal plants as potential antidiabetic treatment and no comprehensive in vitro model existed. In creating a model for determining the effects of alternative traditional medicines as antidiabetic potentiates, it was necessary that two metabolic pathways, namely glucose uptake and insulin secretion, which play a significant role in glucose homeostasis, be at the centre of our investigations. The objective of this project was to optimize the methodology required to screen and ultimately determine the effectiveness of the plant extracts Kankerbos and MRC2003, as antidiabetic potentiates, through observing their effects on glucose utilisation and insulin secretion. If these medicinal plants are going to make a positive contribution to the health of type II diabetic South Africans, then the determination of their efficacy is essential. The cell lines used in this study included 3T3-L1 preadipocytes, Chang liver, C2C12 muscle and INS-1 rat pancreatic cells. Each cell line represents a different in vivo organ that is known to have an influence on glucose homeostasis in our bodies, each with its own unique metabolic pathways and mechanisms of activity, thereby making each one a vital component in the study. The positive controls for the two models were insulin and metformin (glucose utilisation) and glibenclamide (insulin secretion). Insulin was shown to provide a significant increase in the amount of glucose taken up in C2C12 muscle and Chang liver cells for acute conditions. Chronic treatments with metformin provided a significant increase in glucose utilised by Chang liver cells. Glibenclamide was an effective positive control for stimulating insulin secretion by INS-1 cells under acute conditions as there was a significant increase in the amount of insulin secreted. MRC2003 did not show any significant antidiabetic activity. Sutherlandia frutescens (Kankerbos) showed biological activities comparable to some of the more recognized antidiabetic compounds throughout the study. With regards to the glucose utilisation model, Kankerbos was seen to have both acute and chronic effects in different cell lines. In the C2C12 muscle cell line, Kankerbos significantly increased glucose uptake when they were exposed to acute conditions. Kankerbos also had a significant effect on the Chang liver cells as it was observed that under both acute and chronic conditions, this plant extract induced the uptake of glucose into these cells. With respect to the insulin secretion model involving INS-1 cells, no significant effect was seen during acute exposure with Kankerbos treatment. However during chronic exposure, an increase in insulin secretion was initiated by this plant extract. Overall, the results of this study suggest that Kankerbos has a twofold mechanism of action for its glucose-lowering effects. Given that Kankerbos is widely available in South Africa, this study was valuable as it provided an indication that Kankerbos has antidiabetic activities and could possibly be used as an alternative antidiabetic medication.
- Full Text:
- Date Issued: 2006
On the design and monitoring of photovoltaic systems for rural homes
- Authors: Williams, Nathaniel John
- Date: 2011
- Subjects: Photovoltaic cells , Dwellings -- Power supply
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10516 , http://hdl.handle.net/10948/1308 , Photovoltaic cells , Dwellings -- Power supply
- Description: It is estimated that 1.6 billion people today live without access to electricity. Most of these people live in remote rural areas in developing countries. One economic solution to this problem is the deployment of small domestic photovoltaic (PV) systems called solar home systems (SHS). In order to improve the performance and reduce the life cycle cost of these systems, accurate monitoring data of real SHSs is required. To this end, two SHSs typical of those found in the field were designed and installed, one in a rural area of the Eastern Cape of South Africa and the other in the laboratory. Monitoring systems were designed to record energy ows in the system and important environmental parameters. A novel technique was developed to correct for measurement errors occurring during the utilization of pulse width modulation charge control techniques. These errors were found to be as large as 47.6 percent. Simulations show that correction techniques produce measurement errors that are up to 20 times smaller than uncorrected values, depending upon the operating conditions. As a tool to aid in the analysis of monitoring data, a PV performance model was developed. The model, used to predict the maximum power point (MPP) power of a PV array, was able to predict MPP energy production to within 0.2 percent over the course of three days. Monitoring data from the laboratory system shows that the largest sources of energy loss are charge control, module under performance relative to manufacturer specifications and operation of the PV array away from MPP. These accounted for losses of approximately 18-27 percent, 15 percent and 8-11 percent of rated PV energy under standard test conditions, respectively. Energy consumed by loads on the systems was less than 50 percent of rated PV energy for both the remote and laboratory systems. Performance ratios (PR) for the laboratory system ranged from 0.38 to 0.49 for the three monitoring periods. The remote system produced a PR of 0.46. In both systems the PV arrays appear to have been oversized. This was due to overestimation of the energy requirements of the loads on the systems. In the laboratory system, the loads consisting of three compact fluorescent lamps and one incandescent lamp, were used to simulate a typical SHS load pro le and collectively consumed only 85 percent of their rated power. The 8 predicted load profile for the remote system proved to be signi cantly overestimated. The results of the monitoring project demonstrate the importance of acquiring an accurate estimation of the energy demand from loads on the system. Overestimations result in over-sized arrays and energy lost to charge control while under-sized systems risk damaging system batteries and load shedding. Significant under-performance of the PV module used in the laboratory system, underlines the importance of measuring module IV curves and verifying manufacturer specifications before system deployment. It was also found that signi cant PV array performance gains could be obtained by the use of maximum power point tracking charge controllers. Increased PV array performance leads to smaller arrays and reduced system cost.
- Full Text:
- Date Issued: 2011
- Authors: Williams, Nathaniel John
- Date: 2011
- Subjects: Photovoltaic cells , Dwellings -- Power supply
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10516 , http://hdl.handle.net/10948/1308 , Photovoltaic cells , Dwellings -- Power supply
- Description: It is estimated that 1.6 billion people today live without access to electricity. Most of these people live in remote rural areas in developing countries. One economic solution to this problem is the deployment of small domestic photovoltaic (PV) systems called solar home systems (SHS). In order to improve the performance and reduce the life cycle cost of these systems, accurate monitoring data of real SHSs is required. To this end, two SHSs typical of those found in the field were designed and installed, one in a rural area of the Eastern Cape of South Africa and the other in the laboratory. Monitoring systems were designed to record energy ows in the system and important environmental parameters. A novel technique was developed to correct for measurement errors occurring during the utilization of pulse width modulation charge control techniques. These errors were found to be as large as 47.6 percent. Simulations show that correction techniques produce measurement errors that are up to 20 times smaller than uncorrected values, depending upon the operating conditions. As a tool to aid in the analysis of monitoring data, a PV performance model was developed. The model, used to predict the maximum power point (MPP) power of a PV array, was able to predict MPP energy production to within 0.2 percent over the course of three days. Monitoring data from the laboratory system shows that the largest sources of energy loss are charge control, module under performance relative to manufacturer specifications and operation of the PV array away from MPP. These accounted for losses of approximately 18-27 percent, 15 percent and 8-11 percent of rated PV energy under standard test conditions, respectively. Energy consumed by loads on the systems was less than 50 percent of rated PV energy for both the remote and laboratory systems. Performance ratios (PR) for the laboratory system ranged from 0.38 to 0.49 for the three monitoring periods. The remote system produced a PR of 0.46. In both systems the PV arrays appear to have been oversized. This was due to overestimation of the energy requirements of the loads on the systems. In the laboratory system, the loads consisting of three compact fluorescent lamps and one incandescent lamp, were used to simulate a typical SHS load pro le and collectively consumed only 85 percent of their rated power. The 8 predicted load profile for the remote system proved to be signi cantly overestimated. The results of the monitoring project demonstrate the importance of acquiring an accurate estimation of the energy demand from loads on the system. Overestimations result in over-sized arrays and energy lost to charge control while under-sized systems risk damaging system batteries and load shedding. Significant under-performance of the PV module used in the laboratory system, underlines the importance of measuring module IV curves and verifying manufacturer specifications before system deployment. It was also found that signi cant PV array performance gains could be obtained by the use of maximum power point tracking charge controllers. Increased PV array performance leads to smaller arrays and reduced system cost.
- Full Text:
- Date Issued: 2011
Social network analysis of stakeholders in the Duiwenhoks Water Catchment
- Authors: Whyte, Michelle
- Date: 2013
- Subjects: Conservation of natural resources -- South Africa , Conservation plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10756 , http://hdl.handle.net/10948/d1020995
- Description: Social-ecological systems are facing complex social, political, economic and environmental problems beyond the capacity of one group of stakeholders or organization to solve in isolation. Ecosystem degradation causes major environmental and economic concern, due to the loss of ecosystem services which river and wetland ecosystems provide. Stakeholder communities who depend on natural resources need to identify the social processes which are underlying causes to unsuccessful natural resource management and thus environmental degradation. The study is primarily aimed at identifying and understanding the structural and functional properties of the stakeholder network in the Duiwenhoks River catchment in the Western Cape, South Africa. Through analyzing the social network properties the study identifies and describes the main stakeholders involved with natural resource management in the Duiwenhoks water catchment area. How the individual actors from the diverse stakeholder groups are connected through communication ties were assessed. Furthermore, issues and factors which limit the effectiveness of the social network were identified. The main factors include a lack of communication and collaboration between key local resource users and governance officials caused by conflicting perspectives regarding resource management and societal conflicts caused by asymmetries in power distribution favoring government institutions. The lack of collaboration between stakeholders was identified as a contributing factor that links to the resource degradation experienced in the catchment. Ultimately means of overcoming the limitations to effective social networking, in order to manage the challenges related to natural resource management were identified. Management recommendations include the development of bridging ties and collaboration between diverse stakeholders, whilst facilitating participatory processes aimed at participatory problem solving and adaptive co-management of natural resources. Government institutions were identified as being dominant stakeholders in the network and should be mobilized to perform a stronger bridging role to connect disconnected actors. The findings of the study may inform future efforts of researchers and facilitators to implement strategies which promote social networking, social learning and ultimately adaptive co-management in the study area or other similar social-ecological systems. Ultimately, collaboration can be achieved between the diverse stakeholders to successfully improve ecosystem management and resilience in the Duiwenhoks water catchment.
- Full Text:
- Date Issued: 2013
- Authors: Whyte, Michelle
- Date: 2013
- Subjects: Conservation of natural resources -- South Africa , Conservation plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10756 , http://hdl.handle.net/10948/d1020995
- Description: Social-ecological systems are facing complex social, political, economic and environmental problems beyond the capacity of one group of stakeholders or organization to solve in isolation. Ecosystem degradation causes major environmental and economic concern, due to the loss of ecosystem services which river and wetland ecosystems provide. Stakeholder communities who depend on natural resources need to identify the social processes which are underlying causes to unsuccessful natural resource management and thus environmental degradation. The study is primarily aimed at identifying and understanding the structural and functional properties of the stakeholder network in the Duiwenhoks River catchment in the Western Cape, South Africa. Through analyzing the social network properties the study identifies and describes the main stakeholders involved with natural resource management in the Duiwenhoks water catchment area. How the individual actors from the diverse stakeholder groups are connected through communication ties were assessed. Furthermore, issues and factors which limit the effectiveness of the social network were identified. The main factors include a lack of communication and collaboration between key local resource users and governance officials caused by conflicting perspectives regarding resource management and societal conflicts caused by asymmetries in power distribution favoring government institutions. The lack of collaboration between stakeholders was identified as a contributing factor that links to the resource degradation experienced in the catchment. Ultimately means of overcoming the limitations to effective social networking, in order to manage the challenges related to natural resource management were identified. Management recommendations include the development of bridging ties and collaboration between diverse stakeholders, whilst facilitating participatory processes aimed at participatory problem solving and adaptive co-management of natural resources. Government institutions were identified as being dominant stakeholders in the network and should be mobilized to perform a stronger bridging role to connect disconnected actors. The findings of the study may inform future efforts of researchers and facilitators to implement strategies which promote social networking, social learning and ultimately adaptive co-management in the study area or other similar social-ecological systems. Ultimately, collaboration can be achieved between the diverse stakeholders to successfully improve ecosystem management and resilience in the Duiwenhoks water catchment.
- Full Text:
- Date Issued: 2013
Microhabitat and biotic structure of stromatolite formations
- Authors: Weston, Ross-Lynne Alida
- Date: 2018
- Subjects: Stromatolites , Microbial mats Sedimentary structures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17493 , vital:28358
- Description: Stromatolites are among the oldest types of microbial formations. In contrast to their ancient counterparts, many modern marine stromatolites have a coarser internal structure and host a diverse eukaryotic community. Different mesofabric structures are found within stromatolite formations which may provide microhabitat opportunities for organisms. Therefore, the first aim of this study was to investigate how the microalgal (including Bacillariophyta, Chlorophyta and cyanobacteria) community contributes towards the differences observed amongst mesofabric structures in terms of depth profiles and layering at representative stromatolites forming along the Port Elizabeth coastline in South Africa. The second aim was to investigate how the invertebrate community changes between mesofabric types. This was achieved by comparing the proportional abundances of each of the major microalgal classes between the different mesofabric types and depth profiles. Additionally, the invertebrates found within samples collected were identified and counted. These were related to site and environmental characteristics using multivariate modelling. Clear variability in terms of proportional abundance was apparent between microhabitats and with depth. Coarser, more-bioturbated types had a higher bacillariophyte biomass than smoother types. Invertebrate abundance was generally higher in coarser mats. However, one of the finer, well-laminated types had surprisingly more invertebrates than expected, but only in summer. The changes in microalgal and invertebrate community distribution varied seasonally. More microalgae were found in summer and more invertebrates were found in winter. Microalgae distribution was driven by mesofabric features whereas invertebrate distribution was attributed to resource changes. The implications of this study are in terms of the role of microalgae as ecosystem engineers in driving microhabitat differences. The microhabitats provide opportunities for colonisation by invertebrates.
- Full Text:
- Date Issued: 2018
- Authors: Weston, Ross-Lynne Alida
- Date: 2018
- Subjects: Stromatolites , Microbial mats Sedimentary structures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17493 , vital:28358
- Description: Stromatolites are among the oldest types of microbial formations. In contrast to their ancient counterparts, many modern marine stromatolites have a coarser internal structure and host a diverse eukaryotic community. Different mesofabric structures are found within stromatolite formations which may provide microhabitat opportunities for organisms. Therefore, the first aim of this study was to investigate how the microalgal (including Bacillariophyta, Chlorophyta and cyanobacteria) community contributes towards the differences observed amongst mesofabric structures in terms of depth profiles and layering at representative stromatolites forming along the Port Elizabeth coastline in South Africa. The second aim was to investigate how the invertebrate community changes between mesofabric types. This was achieved by comparing the proportional abundances of each of the major microalgal classes between the different mesofabric types and depth profiles. Additionally, the invertebrates found within samples collected were identified and counted. These were related to site and environmental characteristics using multivariate modelling. Clear variability in terms of proportional abundance was apparent between microhabitats and with depth. Coarser, more-bioturbated types had a higher bacillariophyte biomass than smoother types. Invertebrate abundance was generally higher in coarser mats. However, one of the finer, well-laminated types had surprisingly more invertebrates than expected, but only in summer. The changes in microalgal and invertebrate community distribution varied seasonally. More microalgae were found in summer and more invertebrates were found in winter. Microalgae distribution was driven by mesofabric features whereas invertebrate distribution was attributed to resource changes. The implications of this study are in terms of the role of microalgae as ecosystem engineers in driving microhabitat differences. The microhabitats provide opportunities for colonisation by invertebrates.
- Full Text:
- Date Issued: 2018
Trends in large carnivore diets in the Addo Elephant National Park, South Africa
- Authors: Wentworth, Julia Claire
- Date: 2013
- Subjects: Game reserves -- South Africa , Carnivorous animals
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10595 , http://hdl.handle.net/10948/d1020993
- Description: Determining carnivore diets and how they may change over time is important if the management of large carnivores is successful in an enclosed reserve. Carnivore diets are known to shift over time in response to a variety of factors. These factors include prey availability and climatic conditions (rainfall patterns). The re-introduction of lions (Panthera leo) and spotted hyaena (Crocuta crocuta) to Addo Elephant National Park (AENP), South Africa provided the opportunity to study diet trends of lions and spotted hyaena in an enclosed system. The study focused on the diets and overlap of lions and spotted hyaena and how their prey selection changed since their re-introduction in 2003 to 2010. The database included scats collected over a seven year period. A total of 195 spotted hyaena scats and 217 lion scats were analysed using scat analysis. Prey items estimated from scat samples were coupled with prey availabilities to determine preferred prey items. Additionally, from determined carnivore diets, lions and spotted hyaena diet overlap was estimated over time. Lions preferred prey items which included zebra (Equus quagga) and eland (Tragelaphus oryx) during the early portion of the study. Over time preference shifted to include buffalo (Syncerus caffer), bushbuck (Tragelaphus scriptus) and grey duiker (Sylvicapra grimmia). Spotted hyaena preferred zebra and eland in the earlier part of the study, then over time, shifting their selection to grey duiker, buffalo, red hartebeest (Alcephalus busephalus) and bushbuck. Lions and spotted hyaena had a similar diet which increased in overlap during the study (67 percentage - 91 percentage). Our findings suggest that lions and spotted hyaena had a degree of diet specialization; both carnivores avoided and preferred certain prey items relative to their abundance. Their preference excluded the most abundant prey items, thus causing a decline in abundance of rarer species over time. Lions and spotted hyaena did not respond by shifting their diets to consume abundant prey items when their preferred prey items declined in availability. However, this study may be a snap-shot of carnivore’s diet trends. Thus further monitoring of the large carnivore diets should be researched in order to determine which factors drive their prey selection. Additionally, lions and spotted hyaena diet overlap increased overtime. The high diet overlap may be a result from spotted hyaena scavenging off lion kills, thus spotted hyaena diets may be facilitated by lion kills. Finally our data suggests that re-introduced large carnivores in AENP are likely to change the composition of the overall mammal community, potentially eliminating rare but preferred prey species in an enclosed reserve.
- Full Text:
- Date Issued: 2013
- Authors: Wentworth, Julia Claire
- Date: 2013
- Subjects: Game reserves -- South Africa , Carnivorous animals
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10595 , http://hdl.handle.net/10948/d1020993
- Description: Determining carnivore diets and how they may change over time is important if the management of large carnivores is successful in an enclosed reserve. Carnivore diets are known to shift over time in response to a variety of factors. These factors include prey availability and climatic conditions (rainfall patterns). The re-introduction of lions (Panthera leo) and spotted hyaena (Crocuta crocuta) to Addo Elephant National Park (AENP), South Africa provided the opportunity to study diet trends of lions and spotted hyaena in an enclosed system. The study focused on the diets and overlap of lions and spotted hyaena and how their prey selection changed since their re-introduction in 2003 to 2010. The database included scats collected over a seven year period. A total of 195 spotted hyaena scats and 217 lion scats were analysed using scat analysis. Prey items estimated from scat samples were coupled with prey availabilities to determine preferred prey items. Additionally, from determined carnivore diets, lions and spotted hyaena diet overlap was estimated over time. Lions preferred prey items which included zebra (Equus quagga) and eland (Tragelaphus oryx) during the early portion of the study. Over time preference shifted to include buffalo (Syncerus caffer), bushbuck (Tragelaphus scriptus) and grey duiker (Sylvicapra grimmia). Spotted hyaena preferred zebra and eland in the earlier part of the study, then over time, shifting their selection to grey duiker, buffalo, red hartebeest (Alcephalus busephalus) and bushbuck. Lions and spotted hyaena had a similar diet which increased in overlap during the study (67 percentage - 91 percentage). Our findings suggest that lions and spotted hyaena had a degree of diet specialization; both carnivores avoided and preferred certain prey items relative to their abundance. Their preference excluded the most abundant prey items, thus causing a decline in abundance of rarer species over time. Lions and spotted hyaena did not respond by shifting their diets to consume abundant prey items when their preferred prey items declined in availability. However, this study may be a snap-shot of carnivore’s diet trends. Thus further monitoring of the large carnivore diets should be researched in order to determine which factors drive their prey selection. Additionally, lions and spotted hyaena diet overlap increased overtime. The high diet overlap may be a result from spotted hyaena scavenging off lion kills, thus spotted hyaena diets may be facilitated by lion kills. Finally our data suggests that re-introduced large carnivores in AENP are likely to change the composition of the overall mammal community, potentially eliminating rare but preferred prey species in an enclosed reserve.
- Full Text:
- Date Issued: 2013
Seasonal changes in the heat production of an African small mammal, Rhabdomys pumilio
- Authors: Welman, Shaun
- Date: 2012
- Subjects: Mice -- Physiology Body temperature -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21417 , vital:29514
- Description: Endothermy refers to the ability of an individual to produce heat from internal sources, and allows animals to maintain a body temperature that is higher than their external environment. Although much is known about the benefits of endothermy, its origin is highly debated. Nonetheless, due to environmental variation, endotherms have to regulate their heat production (thermogenesis) in order to remain normothermic. An endotherms regulatory response seems to be body size dependent. Keeping warm during cold periods is energetically expensive, and for small mammals this is exacerbated by their high rate of heat loss due to high surface area to volume ratios. To compensate for the heat lost, small non-hibernating mammals must increase their level of thermogenesis. Much of our current understanding of thermogenic responses of small mammals is derived from laboratory acclimated animals, and studies on naturally acclimatized animals are uncommon. In addition, most studies on thermogenesis tend to focus on one level of animal organisation, such as subcellular, tissue or in-vivo, but seldom integrate these data. The aim of this study was to measure year-round variation in thermogenesis across all levels of organisation, using naturally acclimatized Rhabdomys pumilio individuals from the Nelson Mandela Metropolitan University, Port Elizabeth. It was predicted that the level of thermogenesis would be significantly higher during winter relative to other seasons in order to cope with the low ambient temperatures (Tas) experienced during this season. Open flow respirometry was used to measure the animal's oxygen consumption, as a proxy for metabolism; the by product of which is heat production. The animal's basal metabolic rate (BMR), nonshivering thermogenesis (NST) capacity and summit metabolic rate (MSUM) were measured. A Western blot analysis was used to determine the expression of uncoupling protein 1 (UCP 1) in the animals' brown adipose tissue (BAT), as well as determine its relative concentration. The cytochrome c oxidase (COX) activity of the animals' visceral organs and BAT was measured, as an indicator of the tissues' metabolic activity. COX activity was determined as the difference in the tissues' oxygen consumption before and after the addition of horse cytochrome c.
- Full Text:
- Date Issued: 2012
- Authors: Welman, Shaun
- Date: 2012
- Subjects: Mice -- Physiology Body temperature -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21417 , vital:29514
- Description: Endothermy refers to the ability of an individual to produce heat from internal sources, and allows animals to maintain a body temperature that is higher than their external environment. Although much is known about the benefits of endothermy, its origin is highly debated. Nonetheless, due to environmental variation, endotherms have to regulate their heat production (thermogenesis) in order to remain normothermic. An endotherms regulatory response seems to be body size dependent. Keeping warm during cold periods is energetically expensive, and for small mammals this is exacerbated by their high rate of heat loss due to high surface area to volume ratios. To compensate for the heat lost, small non-hibernating mammals must increase their level of thermogenesis. Much of our current understanding of thermogenic responses of small mammals is derived from laboratory acclimated animals, and studies on naturally acclimatized animals are uncommon. In addition, most studies on thermogenesis tend to focus on one level of animal organisation, such as subcellular, tissue or in-vivo, but seldom integrate these data. The aim of this study was to measure year-round variation in thermogenesis across all levels of organisation, using naturally acclimatized Rhabdomys pumilio individuals from the Nelson Mandela Metropolitan University, Port Elizabeth. It was predicted that the level of thermogenesis would be significantly higher during winter relative to other seasons in order to cope with the low ambient temperatures (Tas) experienced during this season. Open flow respirometry was used to measure the animal's oxygen consumption, as a proxy for metabolism; the by product of which is heat production. The animal's basal metabolic rate (BMR), nonshivering thermogenesis (NST) capacity and summit metabolic rate (MSUM) were measured. A Western blot analysis was used to determine the expression of uncoupling protein 1 (UCP 1) in the animals' brown adipose tissue (BAT), as well as determine its relative concentration. The cytochrome c oxidase (COX) activity of the animals' visceral organs and BAT was measured, as an indicator of the tissues' metabolic activity. COX activity was determined as the difference in the tissues' oxygen consumption before and after the addition of horse cytochrome c.
- Full Text:
- Date Issued: 2012
The synthesis and analysis of (2R,3R)-1,1,4,4- tetraphenylbutane-1,2,3,4-tetraol (tetrol) and derivatives, and a study of their host potential
- Authors: Weitz, Selwyn Herbert
- Date: 2015
- Subjects: Chemistry, Organic
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/3735 , vital:20459
- Description: This investigation focussed on the inclusion and resolution ability of (2R,3R)-1,1,4,4-tetraphenylbutane-1,2,3,4-tetraol (TETROL), studies on the stoichiometry of its derivatives and the formation of inclusion compounds for single crystal analysis. The guest compounds that featured in the main study were cyclohexanone, 2-methylcyclohexanone, 3-methylcyclohexanone and 4-methylcyclohexanone. It was found that 3- and 4-methylcyclohexanone were trapped in their energetically unfavourable axial conformations in the inclusion crystal. Resolution experiments proved that (2R,3R)-1,1,4,4-tetraphenylbutane-1,2,3,4-tetraol can be used as a resolving agent for 2- and 3-methylcyclohexanone, with ee values of 13% and 22%, respectively (according to the method of Hiemstra), in favour of the R-enantiomer. Single crystal X-ray diffraction (SCXRD) studies, however, showed that 2-methylcyclohexanone was resolved with an ee of 30% in R. An ee of 56% in R was obtained for 3-methylcyclohexanone. Enantiomer enrichment of 2-methylcyclohexanone was achieved in basic medium (ee of 18% according to the method of Hiemstra) and showed that by using the host in either half or double the molar ratio of the guest, a higher ee was obtained than for a 1:1 ratio. The following TETROL derivatives were also synthesized and their stoichiometries with various guest compounds were determined: (2R,3R)-1,1,4,4-tetra(naphthalen-1-yl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(naphthalen-2-yl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(p-anisyl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(p-tolyl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(m-tolyl)butane-1,2,3,4-tetraol and; (2R,3R)-1,1,4,4-tetra(o-tolyl)butane-1,2,3,4-tetraol.
- Full Text:
- Date Issued: 2015
- Authors: Weitz, Selwyn Herbert
- Date: 2015
- Subjects: Chemistry, Organic
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/3735 , vital:20459
- Description: This investigation focussed on the inclusion and resolution ability of (2R,3R)-1,1,4,4-tetraphenylbutane-1,2,3,4-tetraol (TETROL), studies on the stoichiometry of its derivatives and the formation of inclusion compounds for single crystal analysis. The guest compounds that featured in the main study were cyclohexanone, 2-methylcyclohexanone, 3-methylcyclohexanone and 4-methylcyclohexanone. It was found that 3- and 4-methylcyclohexanone were trapped in their energetically unfavourable axial conformations in the inclusion crystal. Resolution experiments proved that (2R,3R)-1,1,4,4-tetraphenylbutane-1,2,3,4-tetraol can be used as a resolving agent for 2- and 3-methylcyclohexanone, with ee values of 13% and 22%, respectively (according to the method of Hiemstra), in favour of the R-enantiomer. Single crystal X-ray diffraction (SCXRD) studies, however, showed that 2-methylcyclohexanone was resolved with an ee of 30% in R. An ee of 56% in R was obtained for 3-methylcyclohexanone. Enantiomer enrichment of 2-methylcyclohexanone was achieved in basic medium (ee of 18% according to the method of Hiemstra) and showed that by using the host in either half or double the molar ratio of the guest, a higher ee was obtained than for a 1:1 ratio. The following TETROL derivatives were also synthesized and their stoichiometries with various guest compounds were determined: (2R,3R)-1,1,4,4-tetra(naphthalen-1-yl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(naphthalen-2-yl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(p-anisyl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(p-tolyl)butane-1,2,3,4-tetraol; (2R,3R)-1,1,4,4-tetra(m-tolyl)butane-1,2,3,4-tetraol and; (2R,3R)-1,1,4,4-tetra(o-tolyl)butane-1,2,3,4-tetraol.
- Full Text:
- Date Issued: 2015
Seed dynamics and seedling survival in mainland thicket of the Eastern Cape
- Weatherall-Thomas, Clayton Richard
- Authors: Weatherall-Thomas, Clayton Richard
- Date: 2009
- Subjects: Seeds -- Growth , Germination , Seedlings -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10601 , http://hdl.handle.net/10948/1048 , Seeds -- Growth , Germination , Seedlings -- South Africa -- Eastern Cape
- Description: Subtropical Thicket is the dominant vegetation biome in the Eastern Cape. Little regeneration through seedlings has been observed in Thicket. This is of serious concern, as Thicket has been degraded over large areas of its distribution. An understanding of the seed dynamics is necessary for any restoration project. A number of possible causes for the lack of seedlings were therefore investigated. Study sites were best classified according to the biogeographical regions of the Subtropical Thicket Ecosystem Planning (STEP) project. The seed bank of Thicket is dissimilar to the aboveground vegetation, as it lacks woody species and is dominated by herbs and grasses, making little contribution to the regeneration of Thicket species. An increase in canopy cover resulted in lower soil and air temperatures, as well as light, and an increase in litter depth. Seedling abundance and species richness increases with mean annual rainfall, with woody seedlings being dominant in the higher rainfall areas, and succulent species in the lower rainfall regions. Anemochorous species dominated the germinable seed bank, and zoochorous species were more prevalent underneath the canopy, compared to open areas, an indication of active seed dispersal. No germination was recorded in many Thicket species, and dormancy mechanisms were lacking in many of the species that did germinate. Immersion in hot water increased germination in the hard seeds of Acacia karroo, whereas shade enhanced germination in small seeded Burchellia bubalina. The response of seedlings of four Thicket species with varying distribution to shade and drought was studied. Ptaeroxylon obliquum and Aloe africana are drought tolerant species, whereas Burchellia bubalina and Rhus dentata were intolerant to low soil moisture. All four species were able to grow in deep shade, although Rhus dentata would be classified as a shade avoider, unlike the other three species that are shade tolerant. This results in the four species having different regeneration niches. It was concluded that dispersal and the lack of “safe sites” for seedlings were the main limitations to seedling establishment in Mainland Thicket.
- Full Text:
- Date Issued: 2009
- Authors: Weatherall-Thomas, Clayton Richard
- Date: 2009
- Subjects: Seeds -- Growth , Germination , Seedlings -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10601 , http://hdl.handle.net/10948/1048 , Seeds -- Growth , Germination , Seedlings -- South Africa -- Eastern Cape
- Description: Subtropical Thicket is the dominant vegetation biome in the Eastern Cape. Little regeneration through seedlings has been observed in Thicket. This is of serious concern, as Thicket has been degraded over large areas of its distribution. An understanding of the seed dynamics is necessary for any restoration project. A number of possible causes for the lack of seedlings were therefore investigated. Study sites were best classified according to the biogeographical regions of the Subtropical Thicket Ecosystem Planning (STEP) project. The seed bank of Thicket is dissimilar to the aboveground vegetation, as it lacks woody species and is dominated by herbs and grasses, making little contribution to the regeneration of Thicket species. An increase in canopy cover resulted in lower soil and air temperatures, as well as light, and an increase in litter depth. Seedling abundance and species richness increases with mean annual rainfall, with woody seedlings being dominant in the higher rainfall areas, and succulent species in the lower rainfall regions. Anemochorous species dominated the germinable seed bank, and zoochorous species were more prevalent underneath the canopy, compared to open areas, an indication of active seed dispersal. No germination was recorded in many Thicket species, and dormancy mechanisms were lacking in many of the species that did germinate. Immersion in hot water increased germination in the hard seeds of Acacia karroo, whereas shade enhanced germination in small seeded Burchellia bubalina. The response of seedlings of four Thicket species with varying distribution to shade and drought was studied. Ptaeroxylon obliquum and Aloe africana are drought tolerant species, whereas Burchellia bubalina and Rhus dentata were intolerant to low soil moisture. All four species were able to grow in deep shade, although Rhus dentata would be classified as a shade avoider, unlike the other three species that are shade tolerant. This results in the four species having different regeneration niches. It was concluded that dispersal and the lack of “safe sites” for seedlings were the main limitations to seedling establishment in Mainland Thicket.
- Full Text:
- Date Issued: 2009