A case study on the incidence and extent of medullated and coloured fibres in the commercially produced South African wool clip 2010 – 2017
- Authors: Zietsman, Jolandrie
- Date: 2022-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55445 , vital:52002
- Description: No formal study on the incidence and extent of medullated and coloured fibres has been performed in South Africa. The purpose of this research project was to investigate the validity of the claims that there has been an increase in the production of wool contaminated with medullated and coloured fibres. Therefore, the main aim of this study was to determine whether the incidence and extent of medullated and coloured fibres in the South African wool clip have changed over time. Secondly, the study aimed to determine whether the incidence and extent of medullated and coloured fibres have a distinct geographic distribution. This study explored eight years of wool production records (2010 to 2017) obtained from BKB, the largest wool broker in South Africa. For the purpose of this research, the wool-producing areas of South Africa were divided into 6 regions, according to average annual rainfall, vegetation type and major farming practices applied in the area. Statistical analysis of the data included descriptive statistics, analysis of variance and post-hoc tests, as well as regression analyses. This study succeeded in quantifying the extent and prevalence of contamination with medullated and coloured fibres in the South African wool clip. The overarching conclusions were: • Floating kemp is the most important contaminant of wool in South Africa, with the incidence of harsh kemp and coloured fibres being very low. • Generally, the most important areas that need attention in combatting contamination in the South African wool clip, are the Mixed Farming Summer Rainfall Region, the Semi-Arid Grassveld and the High Rainfall Grassland. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Zietsman, Jolandrie
- Date: 2022-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55445 , vital:52002
- Description: No formal study on the incidence and extent of medullated and coloured fibres has been performed in South Africa. The purpose of this research project was to investigate the validity of the claims that there has been an increase in the production of wool contaminated with medullated and coloured fibres. Therefore, the main aim of this study was to determine whether the incidence and extent of medullated and coloured fibres in the South African wool clip have changed over time. Secondly, the study aimed to determine whether the incidence and extent of medullated and coloured fibres have a distinct geographic distribution. This study explored eight years of wool production records (2010 to 2017) obtained from BKB, the largest wool broker in South Africa. For the purpose of this research, the wool-producing areas of South Africa were divided into 6 regions, according to average annual rainfall, vegetation type and major farming practices applied in the area. Statistical analysis of the data included descriptive statistics, analysis of variance and post-hoc tests, as well as regression analyses. This study succeeded in quantifying the extent and prevalence of contamination with medullated and coloured fibres in the South African wool clip. The overarching conclusions were: • Floating kemp is the most important contaminant of wool in South Africa, with the incidence of harsh kemp and coloured fibres being very low. • Generally, the most important areas that need attention in combatting contamination in the South African wool clip, are the Mixed Farming Summer Rainfall Region, the Semi-Arid Grassveld and the High Rainfall Grassland. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
A Combined Experimental and Computational Study of Hydridospirophosphorane Ligand Systems Featuring Halogenated Mandelic Acids
- Authors: Maritz, Marius Johann
- Date: 2023-12
- Subjects: Organic compounds -- Synthesis , Heterocyclic compounds , catalysis -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/62096 , vital:71911
- Description: The search for new stereoselective catalysts remains important for the isolation of enantiomeric products from racemic mixtures. The need exists for these catalysts to be more efficient, to be more cost effective as well as be stable over time without undergoing changes in molecular structure and selectivity. The purpose of this research project was to experimentally synthesise and characterise asymmetric catalysts for the use in enantioselective synthesis. The catalysts consisted of the main group element phosphorous as central atom, with the phenyl rings of mandelic acid ligands monosubstituted with halogen atoms fluorine, chlorine and bromine in different configurations. Ligand binding resulted in the formation of hydridospirophosphorane structures, from which the molecular properties and binding geometry of these molecules could be explained by the theory of apicophilicity. Characterization was performed by NMR and IR spectroscopy as well as diffraction studies that provided the experimental crystal structures. The structural, energetic and spectroscopy results were compared to the theoretically obtained molecular properties using DFT analysis. Various interand intramolecular interactions that existed between molecules found in crystal packing environments were discussed. Additional properties that were investigated included modelling solvation effects, molecular orbital analysis, Hirshfeld surfaces, orbital and atomic energy and population analysis as well as ESP energy calculations with the optimized crystal structures as input. Molecular overlay comparisons were also performed between the experimental and optimized structures where the effectiveness of various DFT functionals and basis sets could be determined. The method with the best overall cost-to-accuracy ratio was found to be the triple-zeta def2-tzvp basis set with B3LYP functional theory and the addition of Grimme’s dispersion correction. Results indicated differences in crystal packing depending largely on the given halogen atoms present in the substituted phenyl rings, with differences observed in electronegativity and steric effects. One of the crystal systems showed additional interactions with solvent molecules, giving the impression that obtaining crystal void formation was possible. Alterations in the transition state activation energies between the isomers of each molecule were found to be present and supported the theory behind the mechanism of stereochemical induction. The studied compounds were therefore effective in isolating different enantiomeric ligands by means of energy differences between conformers and displayed unique catalytic properties resulting from the phosphorous main group element. The hydridospirophosphoranes conformers responsible for the lowest theoretically calculated activation energy induced crystallization as was seen by diffraction results for all compounds. Even as an intriguing observation, crystallization will largely depend on solubility rather than a specific conformer’s amount in solution. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2023
- Full Text:
- Date Issued: 2023-12
- Authors: Maritz, Marius Johann
- Date: 2023-12
- Subjects: Organic compounds -- Synthesis , Heterocyclic compounds , catalysis -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/62096 , vital:71911
- Description: The search for new stereoselective catalysts remains important for the isolation of enantiomeric products from racemic mixtures. The need exists for these catalysts to be more efficient, to be more cost effective as well as be stable over time without undergoing changes in molecular structure and selectivity. The purpose of this research project was to experimentally synthesise and characterise asymmetric catalysts for the use in enantioselective synthesis. The catalysts consisted of the main group element phosphorous as central atom, with the phenyl rings of mandelic acid ligands monosubstituted with halogen atoms fluorine, chlorine and bromine in different configurations. Ligand binding resulted in the formation of hydridospirophosphorane structures, from which the molecular properties and binding geometry of these molecules could be explained by the theory of apicophilicity. Characterization was performed by NMR and IR spectroscopy as well as diffraction studies that provided the experimental crystal structures. The structural, energetic and spectroscopy results were compared to the theoretically obtained molecular properties using DFT analysis. Various interand intramolecular interactions that existed between molecules found in crystal packing environments were discussed. Additional properties that were investigated included modelling solvation effects, molecular orbital analysis, Hirshfeld surfaces, orbital and atomic energy and population analysis as well as ESP energy calculations with the optimized crystal structures as input. Molecular overlay comparisons were also performed between the experimental and optimized structures where the effectiveness of various DFT functionals and basis sets could be determined. The method with the best overall cost-to-accuracy ratio was found to be the triple-zeta def2-tzvp basis set with B3LYP functional theory and the addition of Grimme’s dispersion correction. Results indicated differences in crystal packing depending largely on the given halogen atoms present in the substituted phenyl rings, with differences observed in electronegativity and steric effects. One of the crystal systems showed additional interactions with solvent molecules, giving the impression that obtaining crystal void formation was possible. Alterations in the transition state activation energies between the isomers of each molecule were found to be present and supported the theory behind the mechanism of stereochemical induction. The studied compounds were therefore effective in isolating different enantiomeric ligands by means of energy differences between conformers and displayed unique catalytic properties resulting from the phosphorous main group element. The hydridospirophosphoranes conformers responsible for the lowest theoretically calculated activation energy induced crystallization as was seen by diffraction results for all compounds. Even as an intriguing observation, crystallization will largely depend on solubility rather than a specific conformer’s amount in solution. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2023
- Full Text:
- Date Issued: 2023-12
A data-driven decision-making model for the third-party logistics industry in Africa
- Authors: Moyo, Faith
- Date: 2021-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53875 , vital:46022
- Description: Third-party logistics (3PL) providers have continued to be key players in the supply chain network and have witnessed a growth in the usage of information technology. This growth has enhanced the volume of structured and unstructured data that is collected at a high velocity, and is of rich variety, sometimes described as “Big Data”. Leaders in the 3PL industry are constantly seeking to effectively and efficiently mature their abilities to exploit this data to gain business value through data-driven decision-making (DDDM). DDDM helps the leaders to reduce the reliance they place on observations and intuition to make crucial business decisions in a volatile business environment. The aim of this research was to develop a prescriptive model for DDDM in 3PLs. The model consists of iterative elements that prescribe guidelines to decision-makers in the 3PL industry on how to adopt DDDM. A literature review of existing theoretical frameworks and models for DDDM was conducted to determine the extent to which they contribute towards DDDM for 3PLs. The Design-Science Research Methodology (DSRM) was followed to address the aim of the research and applied to pragmatically and iteratively develop and evaluate the artefact (the model for DDDM) in the real-world context of a 3PL. The literature findings revealed that the challenges with DDDM in organisations include three main categories of challenges related to data quality, data management, vision and capabilities. Once the challenges with DDDM were established, a prescriptive model was designed and developed for DDDM in 3PLs. Qualitative data was collected from semi-structured interviews to gain an understanding of the problems and possible solutions in the real-world context of 3PLs. An As-Is Analysis in the real-world case 3PL company confirmed the challenges identified in literature, and that data is still used in the 3PL company for descriptive and diagnostic analytics to aid with the decision-making processes. This highlights that there is still room for maturity into using data for predictive and prescriptive analytics that will, in turn, improve the decision-making process. An improved second version of the model was demonstrated to the participants (the targeted users), who had the opportunity to evaluate the model. The findings revealed that the model provided clear guidelines on how to make data-driven decisions and that the feedback loop and the data culture aspects highlighted in the design were some of the important features of the model. Some improvements were suggested by participants. A field study of three data analytics tools was conducted to identify the advantages and disadvantages of each as well as to highlight the status of DDDM at the real-world case 3PL. The limitations of the second version of the model, together with the recommendations from the participants were used to inform the improved and revised third version of the model. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-12
- Authors: Moyo, Faith
- Date: 2021-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53875 , vital:46022
- Description: Third-party logistics (3PL) providers have continued to be key players in the supply chain network and have witnessed a growth in the usage of information technology. This growth has enhanced the volume of structured and unstructured data that is collected at a high velocity, and is of rich variety, sometimes described as “Big Data”. Leaders in the 3PL industry are constantly seeking to effectively and efficiently mature their abilities to exploit this data to gain business value through data-driven decision-making (DDDM). DDDM helps the leaders to reduce the reliance they place on observations and intuition to make crucial business decisions in a volatile business environment. The aim of this research was to develop a prescriptive model for DDDM in 3PLs. The model consists of iterative elements that prescribe guidelines to decision-makers in the 3PL industry on how to adopt DDDM. A literature review of existing theoretical frameworks and models for DDDM was conducted to determine the extent to which they contribute towards DDDM for 3PLs. The Design-Science Research Methodology (DSRM) was followed to address the aim of the research and applied to pragmatically and iteratively develop and evaluate the artefact (the model for DDDM) in the real-world context of a 3PL. The literature findings revealed that the challenges with DDDM in organisations include three main categories of challenges related to data quality, data management, vision and capabilities. Once the challenges with DDDM were established, a prescriptive model was designed and developed for DDDM in 3PLs. Qualitative data was collected from semi-structured interviews to gain an understanding of the problems and possible solutions in the real-world context of 3PLs. An As-Is Analysis in the real-world case 3PL company confirmed the challenges identified in literature, and that data is still used in the 3PL company for descriptive and diagnostic analytics to aid with the decision-making processes. This highlights that there is still room for maturity into using data for predictive and prescriptive analytics that will, in turn, improve the decision-making process. An improved second version of the model was demonstrated to the participants (the targeted users), who had the opportunity to evaluate the model. The findings revealed that the model provided clear guidelines on how to make data-driven decisions and that the feedback loop and the data culture aspects highlighted in the design were some of the important features of the model. Some improvements were suggested by participants. A field study of three data analytics tools was conducted to identify the advantages and disadvantages of each as well as to highlight the status of DDDM at the real-world case 3PL. The limitations of the second version of the model, together with the recommendations from the participants were used to inform the improved and revised third version of the model. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-12
A model to predict the development of preeclampsia in South African women
- Authors: Smith, Nathan
- Date: 2022-12
- Subjects: Medical instruments and apparatus -- Design and construction , Hypertension in pregnancy -- measurements-- South Africa , Fetus -- Physiology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59980 , vital:62724
- Description: Preeclampsia is the new onset of hypertension and is one of the leading causes of maternal mortality in South Africa and the world. Preeclampsia is usually diagnosed after 20 weeks’ gestation. Due to South Africa’s poor level of antenatal care, the prediction of pregnant women at risk of developing preeclampsia can be an essential component of improving the level of antenatal. This study used an antenatal care dataset from a South African obstetrician. A review of the literature and existing systems was conducted to identify the eight risk factors. These risk factors are systolic blood pressure, diastolic blood pressure, maternal age, body mass index, diabetes status, hypertension history, nulliparity, and maternal disease. This study used antenatal care datasets from a South African obstetrician. Two models were developed that could accurately predict the development of preeclampsia, one before 16 weeks’ gestation and the other within three check-ups. The model was evaluated using five evaluation metrics: classification accuracy, area under the curve, precision, recall and F-Score. The results of this study show a promising future for the use of machine learning models in health care. To the researcher’s knowledge, this model is the first machine learning model for predicting preeclampsia using a South African dataset. Future work will revolve around validating the model on data collected from field studies in hospitals and clinics around South Africa , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Smith, Nathan
- Date: 2022-12
- Subjects: Medical instruments and apparatus -- Design and construction , Hypertension in pregnancy -- measurements-- South Africa , Fetus -- Physiology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59980 , vital:62724
- Description: Preeclampsia is the new onset of hypertension and is one of the leading causes of maternal mortality in South Africa and the world. Preeclampsia is usually diagnosed after 20 weeks’ gestation. Due to South Africa’s poor level of antenatal care, the prediction of pregnant women at risk of developing preeclampsia can be an essential component of improving the level of antenatal. This study used an antenatal care dataset from a South African obstetrician. A review of the literature and existing systems was conducted to identify the eight risk factors. These risk factors are systolic blood pressure, diastolic blood pressure, maternal age, body mass index, diabetes status, hypertension history, nulliparity, and maternal disease. This study used antenatal care datasets from a South African obstetrician. Two models were developed that could accurately predict the development of preeclampsia, one before 16 weeks’ gestation and the other within three check-ups. The model was evaluated using five evaluation metrics: classification accuracy, area under the curve, precision, recall and F-Score. The results of this study show a promising future for the use of machine learning models in health care. To the researcher’s knowledge, this model is the first machine learning model for predicting preeclampsia using a South African dataset. Future work will revolve around validating the model on data collected from field studies in hospitals and clinics around South Africa , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-12
A spatial assessment of riparian vegetation density and implications for streambank erosion in relation to land tenure in the Mgwalana Catchment, Eastern Cape Province, South Africa
- Authors: Maxama, Asakhile
- Date: 2021-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53864 , vital:46026
- Description: Riparian vegetation provides an array of various ecosystem functions and has significantly shaped the conditions of catchments. It has strong controls on fluvial geomorphology and erosion processes. The Mgwalana catchment has been intensively studied over the years and the current environmental condition of the study has been linked to land use history. The catchment has been subjected to land use/cover changes (LUCC) over the years. However, spatial variations in riparian vegetation, their implications for stream bank stability and the contribution of land tenure systems to stream channel degradation are poorly understood. The study sought to assess the implications of the spatial variations in riparian vegetation density for stream bank erosion in relation to land tenure on a catchment scale. Land tenure units comprising the catchment of study are traditional and betterment villages (communal lands), and former white commercial farms. A three-pronged approach using GIS and remote sensing, field investigations and laboratory procedures for soil analysis was employed in this study. Variations of riparian vegetation density in the catchment were mapped using ArcGIS for the two land tenure units to assess the spatial variations of riparian density along stream reaches and to determine the spatial relationship between land tenure units and riparian vegetation diminution. Other mapped shape files include sediment accumulation zones to analyse the spatial relationship between riparian vegetation density and sediment sinks. LUCC classification and analysis of the Normalized Difference Vegetation Index (NDVI) were carried out in IDRISI Selva, using Landsat 8 TM imagery of 2018 to represent the current spatial riparian vegetation variations in the catchment. Field investigations were conducted to determine the coupling among hillslope gully erosion, riparian vegetation density and sink areas; and to assess physical characteristics of soil. This would permit an assessment of the implications of riparian vegetation for stream bank erosion and sediment accumulation within the tenure units. Soil samples were taken from scantily and densely vegetated stream reaches, as well as measurements of channel widths and depths. Analyses of soil physical properties viz; grain size distribution, bulk density, soil texture and aggregate stability were done. Results demonstrated that a sparse riparian vegetation distribution was consistent with the communal villages, confined to the upper catchment area. Dense riparian vegetation distribution was consistent with former commercial farms in the lower catchment area. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text:
- Date Issued: 2021-12
- Authors: Maxama, Asakhile
- Date: 2021-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53864 , vital:46026
- Description: Riparian vegetation provides an array of various ecosystem functions and has significantly shaped the conditions of catchments. It has strong controls on fluvial geomorphology and erosion processes. The Mgwalana catchment has been intensively studied over the years and the current environmental condition of the study has been linked to land use history. The catchment has been subjected to land use/cover changes (LUCC) over the years. However, spatial variations in riparian vegetation, their implications for stream bank stability and the contribution of land tenure systems to stream channel degradation are poorly understood. The study sought to assess the implications of the spatial variations in riparian vegetation density for stream bank erosion in relation to land tenure on a catchment scale. Land tenure units comprising the catchment of study are traditional and betterment villages (communal lands), and former white commercial farms. A three-pronged approach using GIS and remote sensing, field investigations and laboratory procedures for soil analysis was employed in this study. Variations of riparian vegetation density in the catchment were mapped using ArcGIS for the two land tenure units to assess the spatial variations of riparian density along stream reaches and to determine the spatial relationship between land tenure units and riparian vegetation diminution. Other mapped shape files include sediment accumulation zones to analyse the spatial relationship between riparian vegetation density and sediment sinks. LUCC classification and analysis of the Normalized Difference Vegetation Index (NDVI) were carried out in IDRISI Selva, using Landsat 8 TM imagery of 2018 to represent the current spatial riparian vegetation variations in the catchment. Field investigations were conducted to determine the coupling among hillslope gully erosion, riparian vegetation density and sink areas; and to assess physical characteristics of soil. This would permit an assessment of the implications of riparian vegetation for stream bank erosion and sediment accumulation within the tenure units. Soil samples were taken from scantily and densely vegetated stream reaches, as well as measurements of channel widths and depths. Analyses of soil physical properties viz; grain size distribution, bulk density, soil texture and aggregate stability were done. Results demonstrated that a sparse riparian vegetation distribution was consistent with the communal villages, confined to the upper catchment area. Dense riparian vegetation distribution was consistent with former commercial farms in the lower catchment area. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text:
- Date Issued: 2021-12
A study of the airflow on the windward slope of a transverse dune in the Alexandria coastal dunefield
- Authors: Burkinshaw, Jennifer Ruth
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52734 , vital:43883
- Description: Our understanding of the evolution of dune morphology has been hampered by a lack of empirical observations of airflow behaviour over dune forms. Sand dunes intrude into the atmospheric boundary layer and convergence of streamlines results in an acceleration of airflow up the windward slopes of dunes. This study examines the airflow structure and corresponding bedform development on the windward slope of a 7 m high transverse dune on the edge of the Alexandria coastal dunefield, Algoa Bay, South Africa. The Alexandria dunefield is subjected to a trimodal wind regime, consisting of the dominant south-westerly which blows all year round, summer easterlies and winter northwesterlies. The morphology of the study dune, Dune13, is controlled by the easterlies and north-westerlies, and reverses seasonally with respect to these two winds. Seven section lines 30 m apart and normal to the dune crest were surveyed regularly over the period of a year to monitor the reversal process. Three detailed topographic surveys were also done during this period. Airflow behaviour was monitored during the year. Wind speed profiles on the windward slope of the dune were measured using 4 to 5 vertical arrays of anemometers positioned from the base of the dune to the crest on a 1 selected section line. Usually 4 to 5 anemometers were deployed in each vertical array, from a height of 6 to 10 cm above the surface, up to a height of 150 cm above the surface. Initially 8 microanemometers were available; ultimately 28 anemometers were run simultaneously. An independent weather station at an elevation of 6 m recorded the unaccelerated flow. Local gradient measurements and erosion and deposition rates were recorded along selected section lines. Strong summer easterly winds (14 m/sec at 1.4 m above the dune crest) were measured on a dune slope in the process of being transformed from a slipface to a stoss slope. The following winter, light north-westerly winds (typically B m/sec at 1.6 m above the dune crest) were measured on the new windward slope already reversed by the prevailing winter wind. Airflow data confirm the compression of airflow against the windward slope resulting in a non-logarithmic wind speed profile. Compression results in an increased shear velocity within 30 cm of the dune surface, and the dune slope is eroded. Higher up in the wind speed profile, shear velocity decreases to 0.1 m/sec. It is not known at what height the wind speed profile recovers from the intrusion of the dune into the boundary layer. High values of shear velocity (1.6 m/sec) above the rounded crestal area of the dune record the recovery of the wind speed profile from flow divergence, which is a response to the rapid reduction of dune gradient and is accompanied by deposition of sand in this region. 2 The erosion pin data act as a simple and sensitive test for changes in gradient, reflecting the dune's response to changes in the airflow regime. The shape of the dune plays a major role in determining the extent of the compression and the distribution of shear velocity up the slope. Increased shear velocity is experienced on that part of the slope which is nonaerodynamic with respect to the prevailing wind. Under unidirectional conditions, feedback between flow and form results ultimately in a slope with a curvature such that shear velocity increases systematically upslope. The survey data and erosion pin data record the reversal process as the dune achieves a new steady state during each wind season. The existence of a non-logarithmic wind speed profile makes it difficult to know what relevant measure of shear velocity is to be used in sand transport equations. Future work should include wind speed measurements within 10 cm of the surface. An ideal study modelling aeolian bedform development would utilise wind tunnel measurements, combined with field measurements such as obtained in this study, for comparison with numerical modelling. The study needs to be extended to 3-dimensional airflow measurements. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Burkinshaw, Jennifer Ruth
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52734 , vital:43883
- Description: Our understanding of the evolution of dune morphology has been hampered by a lack of empirical observations of airflow behaviour over dune forms. Sand dunes intrude into the atmospheric boundary layer and convergence of streamlines results in an acceleration of airflow up the windward slopes of dunes. This study examines the airflow structure and corresponding bedform development on the windward slope of a 7 m high transverse dune on the edge of the Alexandria coastal dunefield, Algoa Bay, South Africa. The Alexandria dunefield is subjected to a trimodal wind regime, consisting of the dominant south-westerly which blows all year round, summer easterlies and winter northwesterlies. The morphology of the study dune, Dune13, is controlled by the easterlies and north-westerlies, and reverses seasonally with respect to these two winds. Seven section lines 30 m apart and normal to the dune crest were surveyed regularly over the period of a year to monitor the reversal process. Three detailed topographic surveys were also done during this period. Airflow behaviour was monitored during the year. Wind speed profiles on the windward slope of the dune were measured using 4 to 5 vertical arrays of anemometers positioned from the base of the dune to the crest on a 1 selected section line. Usually 4 to 5 anemometers were deployed in each vertical array, from a height of 6 to 10 cm above the surface, up to a height of 150 cm above the surface. Initially 8 microanemometers were available; ultimately 28 anemometers were run simultaneously. An independent weather station at an elevation of 6 m recorded the unaccelerated flow. Local gradient measurements and erosion and deposition rates were recorded along selected section lines. Strong summer easterly winds (14 m/sec at 1.4 m above the dune crest) were measured on a dune slope in the process of being transformed from a slipface to a stoss slope. The following winter, light north-westerly winds (typically B m/sec at 1.6 m above the dune crest) were measured on the new windward slope already reversed by the prevailing winter wind. Airflow data confirm the compression of airflow against the windward slope resulting in a non-logarithmic wind speed profile. Compression results in an increased shear velocity within 30 cm of the dune surface, and the dune slope is eroded. Higher up in the wind speed profile, shear velocity decreases to 0.1 m/sec. It is not known at what height the wind speed profile recovers from the intrusion of the dune into the boundary layer. High values of shear velocity (1.6 m/sec) above the rounded crestal area of the dune record the recovery of the wind speed profile from flow divergence, which is a response to the rapid reduction of dune gradient and is accompanied by deposition of sand in this region. 2 The erosion pin data act as a simple and sensitive test for changes in gradient, reflecting the dune's response to changes in the airflow regime. The shape of the dune plays a major role in determining the extent of the compression and the distribution of shear velocity up the slope. Increased shear velocity is experienced on that part of the slope which is nonaerodynamic with respect to the prevailing wind. Under unidirectional conditions, feedback between flow and form results ultimately in a slope with a curvature such that shear velocity increases systematically upslope. The survey data and erosion pin data record the reversal process as the dune achieves a new steady state during each wind season. The existence of a non-logarithmic wind speed profile makes it difficult to know what relevant measure of shear velocity is to be used in sand transport equations. Future work should include wind speed measurements within 10 cm of the surface. An ideal study modelling aeolian bedform development would utilise wind tunnel measurements, combined with field measurements such as obtained in this study, for comparison with numerical modelling. The study needs to be extended to 3-dimensional airflow measurements. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text:
- Date Issued: 2021-04
A value alignment smart city stakeholder model
- Van der Hoogen, Anthea Vivian
- Authors: Van der Hoogen, Anthea Vivian
- Date: 2021-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/54129 , vital:46309
- Description: The concept of a Smart City has evolved over the last three decades and has attracted the increasing interest of the scientific research community. Unfortunately, many Smart City projects and initiatives do not provide the value expected by all the stakeholders. Many of the reasons for this relate to a lack of data management, data integration, data access and stakeholder participation. People are an integral part of any city’s ecosystem, and the Smart City concept was introduced to address the challenges of an ever-growing global population leading to the risk of depletion of economic, environmental and social resources. The problem addressed in this study is based on the challenges preventing the creation of the value of smart cities or stakeholders. Limited research has been published on the status of Smart City initiatives or on the impact of various success factors on the potential value creation for stakeholders including citizens. Studies on initiatives in developing countries, such as South Africa are even less. Whilst some challenges and constraints related to smart cities in Africa have been reported, there are no studies reporting on initiatives across the data value chain that consider all types of stakeholders, nor the impact of these initiatives. This study addressed this gap in research and designed a theoretical Value Alignment Smart City Stakeholder (VASCS) Model based on a Systematic Literature Review and a review of related theories. The model has important components that should form part of any Smart City project or Smart City initiative. These five main components are: 1) nine Smart City dimensions with related success factors; 2) four stakeholder roles (enablers, providers, utilisers and users); 3) the data value chain; and 4) the five phases of stakeholder benefits/value realisation that can be linked to; 5) stakeholder value alignment. This study applied the VASCS Model to Smart City initiatives in two case studies in the Eastern Cape Province of South Africa, which were the Nelson Mandela Bay and Buffalo City to investigate and understand the status of such initiatives and the alignment of value thereof. The stakeholder interviews were conducted in two rounds with various stakeholders of Smart City initiatives, referred to as cases in the two case studies. An expert review of the VASCS Model was conducted with eight experts in the field of Information Systems and Smart Cities. The findings of this review served to confirm the components of the model, with only minor improvements recommended. It was confirmed that all of the components need to be considered in planning Smart City projects. The first round consisted of six interviews with enablers and providers and the second round consisted of 22 interviews with users, utilisers and citizens. The interviews investigated the value and impact experienced by stakeholders of these initiatives, with a particular focus on the users, utilisers and citizens of the cases. The interview data was transcribed and qualitatively analysed by using Atlas.tiand Excel. The data was analysed according to the Technological, Organisational and Environmental theory constructs and other identified themes. The interview analysis findings revealed several drivers for these initiatives, which were primarily cost reduction, integration and quality assurance. The results also highlighted access to resources, such as technical skills as a challenge. Another challenge identified was connectivity related to access to data and the digital and physical divide that can impact decision making. The main benefits of Smart City initiatives highlighted were the provision of infrastructure, education and training and digitalisation. The theoretical contribution of this study is the VASCS Model, which can assist other researchers and practitioners with knowledge of the factors, drivers, challenges and value obtained in Smart City initiatives. The model has two supplementary components: A Stakeholder Classification Model and a Smart City Success Factor Evaluation Template. The practical contribution of this study is the potential use of the VASCS Model by practitioners, city management, researchers and other stakeholders, who can use the model, with the related model and template for planning and evaluating Smart City initiatives. The model can be used to classify the digital activities according to a Smart City’s success factors while evaluating the value created by these activities. The impact of these initiatives can then be assessed through value realisation and alignment for stakeholders. The scientific contribution is the adoption of the model to the cases in the Eastern Cape. To reveal in depth, rich, interview findings that provide important lessons learnt relating to the value created for the stakeholders and the addition of these findings to the body of knowledge. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-12
- Authors: Van der Hoogen, Anthea Vivian
- Date: 2021-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/54129 , vital:46309
- Description: The concept of a Smart City has evolved over the last three decades and has attracted the increasing interest of the scientific research community. Unfortunately, many Smart City projects and initiatives do not provide the value expected by all the stakeholders. Many of the reasons for this relate to a lack of data management, data integration, data access and stakeholder participation. People are an integral part of any city’s ecosystem, and the Smart City concept was introduced to address the challenges of an ever-growing global population leading to the risk of depletion of economic, environmental and social resources. The problem addressed in this study is based on the challenges preventing the creation of the value of smart cities or stakeholders. Limited research has been published on the status of Smart City initiatives or on the impact of various success factors on the potential value creation for stakeholders including citizens. Studies on initiatives in developing countries, such as South Africa are even less. Whilst some challenges and constraints related to smart cities in Africa have been reported, there are no studies reporting on initiatives across the data value chain that consider all types of stakeholders, nor the impact of these initiatives. This study addressed this gap in research and designed a theoretical Value Alignment Smart City Stakeholder (VASCS) Model based on a Systematic Literature Review and a review of related theories. The model has important components that should form part of any Smart City project or Smart City initiative. These five main components are: 1) nine Smart City dimensions with related success factors; 2) four stakeholder roles (enablers, providers, utilisers and users); 3) the data value chain; and 4) the five phases of stakeholder benefits/value realisation that can be linked to; 5) stakeholder value alignment. This study applied the VASCS Model to Smart City initiatives in two case studies in the Eastern Cape Province of South Africa, which were the Nelson Mandela Bay and Buffalo City to investigate and understand the status of such initiatives and the alignment of value thereof. The stakeholder interviews were conducted in two rounds with various stakeholders of Smart City initiatives, referred to as cases in the two case studies. An expert review of the VASCS Model was conducted with eight experts in the field of Information Systems and Smart Cities. The findings of this review served to confirm the components of the model, with only minor improvements recommended. It was confirmed that all of the components need to be considered in planning Smart City projects. The first round consisted of six interviews with enablers and providers and the second round consisted of 22 interviews with users, utilisers and citizens. The interviews investigated the value and impact experienced by stakeholders of these initiatives, with a particular focus on the users, utilisers and citizens of the cases. The interview data was transcribed and qualitatively analysed by using Atlas.tiand Excel. The data was analysed according to the Technological, Organisational and Environmental theory constructs and other identified themes. The interview analysis findings revealed several drivers for these initiatives, which were primarily cost reduction, integration and quality assurance. The results also highlighted access to resources, such as technical skills as a challenge. Another challenge identified was connectivity related to access to data and the digital and physical divide that can impact decision making. The main benefits of Smart City initiatives highlighted were the provision of infrastructure, education and training and digitalisation. The theoretical contribution of this study is the VASCS Model, which can assist other researchers and practitioners with knowledge of the factors, drivers, challenges and value obtained in Smart City initiatives. The model has two supplementary components: A Stakeholder Classification Model and a Smart City Success Factor Evaluation Template. The practical contribution of this study is the potential use of the VASCS Model by practitioners, city management, researchers and other stakeholders, who can use the model, with the related model and template for planning and evaluating Smart City initiatives. The model can be used to classify the digital activities according to a Smart City’s success factors while evaluating the value created by these activities. The impact of these initiatives can then be assessed through value realisation and alignment for stakeholders. The scientific contribution is the adoption of the model to the cases in the Eastern Cape. To reveal in depth, rich, interview findings that provide important lessons learnt relating to the value created for the stakeholders and the addition of these findings to the body of knowledge. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-12
An assessment of different methods for measuring mammal diversity in two Southern African arid ecosystems.
- Authors: Burt, Chloe
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Biodiversity -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52338 , vital:43591
- Description: A current critical environmental problem is the loss of biodiversity. To allow for adaptive management and effective conservation interventions, reliable data needs to be readily available and effectively collected. To gather reliable data, the most appropriate method must be used. The aim of this thesis was to compare the effectiveness and efficiency of different mammal diversity sampling techniques, including discussing specificities and complementarity of each. I also assessed the limitation of methods in terms of the influence of species traits on detectability. I used standard mammal field methods such as block transects, camera traps, track plates, spotlight surveys, mist nets, acoustic surveys, and live traps for a wide range of mammal taxa, and also included the use of local knowledge in the comparison. I assessed the cost-efficiency of each method by determining the cost per species. The efficiency of each method was assessed by observing when the species accumulation curve reached an asymptote. The effectiveness was determined by the species richness and the taxonomic groups the method detected. My results indicated that block transects were the most efficient and effective method to assess species richness. However, a combination of methods allowed for a more comprehensive survey and my results indicate that block transects and live traps were the best combination. It is important to note, not only the effectiveness and efficiency of methods be assessed, but also their limitations. I therefore also assessed the influence of species traits on the detectability of five methods. The species traits that I tested were body size, diet, activity, and if they lived in groups. On both study areas, body size was the main trait that influenced detectability with most field methods. Diet and activity had varying influence on detectability depending on the method. Group living did not significantly influence detectability. Based on my results, I provide guidelines for choosing the most appropriate survey method for targeted studies on mammals in arid ecosystems as well as guidelines for choosing the most appropriate methods for a terrestrial mammal inventory. Survey methods selection and guidelines provided here can allow for effective monitoring and therefore effective and adaptive management and having reliable and repeatable outcomes from surveys. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Burt, Chloe
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Biodiversity -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52338 , vital:43591
- Description: A current critical environmental problem is the loss of biodiversity. To allow for adaptive management and effective conservation interventions, reliable data needs to be readily available and effectively collected. To gather reliable data, the most appropriate method must be used. The aim of this thesis was to compare the effectiveness and efficiency of different mammal diversity sampling techniques, including discussing specificities and complementarity of each. I also assessed the limitation of methods in terms of the influence of species traits on detectability. I used standard mammal field methods such as block transects, camera traps, track plates, spotlight surveys, mist nets, acoustic surveys, and live traps for a wide range of mammal taxa, and also included the use of local knowledge in the comparison. I assessed the cost-efficiency of each method by determining the cost per species. The efficiency of each method was assessed by observing when the species accumulation curve reached an asymptote. The effectiveness was determined by the species richness and the taxonomic groups the method detected. My results indicated that block transects were the most efficient and effective method to assess species richness. However, a combination of methods allowed for a more comprehensive survey and my results indicate that block transects and live traps were the best combination. It is important to note, not only the effectiveness and efficiency of methods be assessed, but also their limitations. I therefore also assessed the influence of species traits on the detectability of five methods. The species traits that I tested were body size, diet, activity, and if they lived in groups. On both study areas, body size was the main trait that influenced detectability with most field methods. Diet and activity had varying influence on detectability depending on the method. Group living did not significantly influence detectability. Based on my results, I provide guidelines for choosing the most appropriate survey method for targeted studies on mammals in arid ecosystems as well as guidelines for choosing the most appropriate methods for a terrestrial mammal inventory. Survey methods selection and guidelines provided here can allow for effective monitoring and therefore effective and adaptive management and having reliable and repeatable outcomes from surveys. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
An evaluation of hibiscus sabdariffa gold nanoparticles for the treatment of triple negative breast cancer
- Authors: Reddy, Nireshini
- Date: 2022-12
- Subjects: Breast--Cancer--Treatment--Technological innovations , Nanomedicine – South Africa , Roselle
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59945 , vital:62697
- Description: Cancer is responsible for the millions of deaths worldwide every year, being ranked as the second leading cause of mortality in the world. Triple negative breast cancer (TNBC) is the most severe type of breast cancer, as it is the most aggressive and difficult to treat. Current treatment methods involve surgery, hormonal-, radiation- and chemotherapy. These are costly and often have severe adverse effects. There has been increasing research in the development of alternative treatment methods to reduce the side effects of cancer therapeutics, as well as the cost. The rapidly growing field of nanotechnology has allowed for the incorporation of several diagnostic, targeting, and therapeutic agents into nanomaterials for cancer treatment. The application of gold nanoparticles (AuNPs) in the diagnosis and treatment of various types of cancers has been widely investigated. AuNPs vary in size, shape, and structure, allowing for the development of diverse formulations for various treatments. The use of green materials, particularly plant material, to synthesise nanomaterials has allowed for the safe, cost-friendly and eco-friendly production of AuNPs that can be used to treat TNBC. The aim of this study was to evaluate the efficiency of green AuNPs synthesised with Hibiscus sabdariffa to treat TNBC in a pilot murine model. Spherical AuNPs were synthesised using an aqueous extract of the calyces of this plant. The AuNPs were characterised using UV-Vis spectrometry, dynamic light scattering, high resolution – transmission electron microscopy, and in vitro stability testing. A cell viability assay showed that these AuNPs exhibited cytotoxicity towards E0771 cells in a dose-dependent manner, where cells treated with the highest concentration of AuNPs (250 µg/mL) exhibited the lowest cell viability (7%). During the in vivo pilot study, C57BL/6 mice were inoculated with TNBC using the E0771 cells. It was found that TNBC had rapidly spread, resulting in metastasis in the liver, as well as omentum and mesentery. This resulted in a number of mice dying; therefore, shortening treatment time of the AuNPs. It is suggested that AuNP treatment may have exacerbated mouse death by promoting ROS production in metastasised tissue, suggesting that AuNP treatment may not be suitable for stage 4 TNBC. Tumor analysis of caspase-3 content showed that the AuNPs exhibited potential pro-apoptotic activity in the tumours, prompting further research into the tumour uptake and apoptotic mechanism of these AuNPs. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Reddy, Nireshini
- Date: 2022-12
- Subjects: Breast--Cancer--Treatment--Technological innovations , Nanomedicine – South Africa , Roselle
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59945 , vital:62697
- Description: Cancer is responsible for the millions of deaths worldwide every year, being ranked as the second leading cause of mortality in the world. Triple negative breast cancer (TNBC) is the most severe type of breast cancer, as it is the most aggressive and difficult to treat. Current treatment methods involve surgery, hormonal-, radiation- and chemotherapy. These are costly and often have severe adverse effects. There has been increasing research in the development of alternative treatment methods to reduce the side effects of cancer therapeutics, as well as the cost. The rapidly growing field of nanotechnology has allowed for the incorporation of several diagnostic, targeting, and therapeutic agents into nanomaterials for cancer treatment. The application of gold nanoparticles (AuNPs) in the diagnosis and treatment of various types of cancers has been widely investigated. AuNPs vary in size, shape, and structure, allowing for the development of diverse formulations for various treatments. The use of green materials, particularly plant material, to synthesise nanomaterials has allowed for the safe, cost-friendly and eco-friendly production of AuNPs that can be used to treat TNBC. The aim of this study was to evaluate the efficiency of green AuNPs synthesised with Hibiscus sabdariffa to treat TNBC in a pilot murine model. Spherical AuNPs were synthesised using an aqueous extract of the calyces of this plant. The AuNPs were characterised using UV-Vis spectrometry, dynamic light scattering, high resolution – transmission electron microscopy, and in vitro stability testing. A cell viability assay showed that these AuNPs exhibited cytotoxicity towards E0771 cells in a dose-dependent manner, where cells treated with the highest concentration of AuNPs (250 µg/mL) exhibited the lowest cell viability (7%). During the in vivo pilot study, C57BL/6 mice were inoculated with TNBC using the E0771 cells. It was found that TNBC had rapidly spread, resulting in metastasis in the liver, as well as omentum and mesentery. This resulted in a number of mice dying; therefore, shortening treatment time of the AuNPs. It is suggested that AuNP treatment may have exacerbated mouse death by promoting ROS production in metastasised tissue, suggesting that AuNP treatment may not be suitable for stage 4 TNBC. Tumor analysis of caspase-3 content showed that the AuNPs exhibited potential pro-apoptotic activity in the tumours, prompting further research into the tumour uptake and apoptotic mechanism of these AuNPs. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-12
An evaluation of the effectiveness of area-based conservation intervention in avoiding biodiversity loss in South Africa
- Authors: Van Straten, Maurice Oswald
- Date: 2023-04
- Subjects: Soil conservation -- South Africa , Livestock farms – South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61132 , vital:69765
- Description: Habitat degradation, livestock farming, crop cultivation, rangeland overutilization and veld mismanagement are among the factors causing biodiversity loss worldwide. Rangelands in arid and semi-arid environments are no exception, as they are under stress from conversion into cropland and pressure from livestock farming. In these arid areas, rainfall is unpredictable and plant recruitment levels low, resulting in veld rehabilitation being a potentially expensive and time-consuming undertaking for landowners. Landowners implement different rehabilitation methods to increase overall vegetation cover and prevent further soil and vegetation degradation. These rehabilitation methods may include the creation of micro-catchments, mulching, brushpacking, ripping, geotextiles, stone cobbling and erosion control fences, individually or in combination with the addition of reseeding, replanting, and use of manure or fertilizer to supplement land rehabilitation. This study investigated the significance of three rehabilitation methods (hollows, brush packing and a combination of these two methods) on water infiltration rates, soil moisture content, and vegetation canopy cover with associated growth form canopy cover over a period of 17 months (March 2021 to August 2022). This study showed that rehabilitation methods implemented had no significant impact on water infiltration rates and vegetation canopy cover. However, rehabilitation methods had a significant impact on soil moisture content. The use of a hollows is recommended when attempting to increase the soil moisture content percentage when performing rehabilitation. Overall vegetation canopy cover is influenced more by seasonal changes than by the rehabilitation methods implemented. This study indicated that the creation of micro-catchments is an effective rehabilitation method to use in an arid area, as it promotes vegetation establishment and growth. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Science and Management , 2023
- Full Text:
- Date Issued: 2023-04
- Authors: Van Straten, Maurice Oswald
- Date: 2023-04
- Subjects: Soil conservation -- South Africa , Livestock farms – South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61132 , vital:69765
- Description: Habitat degradation, livestock farming, crop cultivation, rangeland overutilization and veld mismanagement are among the factors causing biodiversity loss worldwide. Rangelands in arid and semi-arid environments are no exception, as they are under stress from conversion into cropland and pressure from livestock farming. In these arid areas, rainfall is unpredictable and plant recruitment levels low, resulting in veld rehabilitation being a potentially expensive and time-consuming undertaking for landowners. Landowners implement different rehabilitation methods to increase overall vegetation cover and prevent further soil and vegetation degradation. These rehabilitation methods may include the creation of micro-catchments, mulching, brushpacking, ripping, geotextiles, stone cobbling and erosion control fences, individually or in combination with the addition of reseeding, replanting, and use of manure or fertilizer to supplement land rehabilitation. This study investigated the significance of three rehabilitation methods (hollows, brush packing and a combination of these two methods) on water infiltration rates, soil moisture content, and vegetation canopy cover with associated growth form canopy cover over a period of 17 months (March 2021 to August 2022). This study showed that rehabilitation methods implemented had no significant impact on water infiltration rates and vegetation canopy cover. However, rehabilitation methods had a significant impact on soil moisture content. The use of a hollows is recommended when attempting to increase the soil moisture content percentage when performing rehabilitation. Overall vegetation canopy cover is influenced more by seasonal changes than by the rehabilitation methods implemented. This study indicated that the creation of micro-catchments is an effective rehabilitation method to use in an arid area, as it promotes vegetation establishment and growth. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Science and Management , 2023
- Full Text:
- Date Issued: 2023-04
An evolutionary algorithm approach to ecological optimal control problems
- Authors: Westcott, Amy-Rose
- Date: 2022-04
- Subjects: Mathematical optimization -- South africa , Evolutionary programming (Computer science)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55544 , vital:52812
- Description: There are several challenges associated with applying conventional (hereafter classic) optimal control (OC) methods to ecological optimal control problems (OCPs). Conditions required by these methods, including differentiability and convexity, for example, are not always met, and ecological problems do not always adhere to solvable OCP formulations. Moreover, mathematically optimal solutions do not always translate to optimal ecological strategies in practice. Despite this, alternative OC approaches are relatively under-explored. Evolutionary algorithms (EAs) circumvent many of the complex aspects of classic OC methods and have been successfully applied to diverse OCPs. Nevertheless, EAs have sel dom been applied to ecological OCPs. The viability of an EA approach to ecological OCPs was therefore investigated in the current study, facilitated by four case studies of increasing complexity and a genetic algorithm (GA) as a representative EA approach. To ascertain the accuracy of a GA approach, comparisons between a GA and classic OC methods were conducted in the first three case studies. The GA generated near-optima in these comparisons, comparable to the corresponding classical solutions, whilst avoiding non-trivial mathematical theory. Supported by these results, an unconventional OCP, that arguably cannot be solved using classic OC methods, was formulated in the fourth case study, and solved using a GA approach. The resulting solution was feasible and further conformed with strategies found to be successful in practice. Additionally, the GA approach was rela tively simple to apply in all case studies. These collective outcomes of demonstrated the viability of a GA as an OC method in eco logical OCPs, thereby supporting the use of an EA approach as an alternative to classic OC methods in ecological OCPs. The feasibility of an EA approach to atypical OCPs was further demonstrated, which may act to increase realism in OC applications. Further investigation in this regard is thus warranted by this study. , Thesis (MS) -- Faculty of Science, Mathematics and Applied Mathematics, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Westcott, Amy-Rose
- Date: 2022-04
- Subjects: Mathematical optimization -- South africa , Evolutionary programming (Computer science)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55544 , vital:52812
- Description: There are several challenges associated with applying conventional (hereafter classic) optimal control (OC) methods to ecological optimal control problems (OCPs). Conditions required by these methods, including differentiability and convexity, for example, are not always met, and ecological problems do not always adhere to solvable OCP formulations. Moreover, mathematically optimal solutions do not always translate to optimal ecological strategies in practice. Despite this, alternative OC approaches are relatively under-explored. Evolutionary algorithms (EAs) circumvent many of the complex aspects of classic OC methods and have been successfully applied to diverse OCPs. Nevertheless, EAs have sel dom been applied to ecological OCPs. The viability of an EA approach to ecological OCPs was therefore investigated in the current study, facilitated by four case studies of increasing complexity and a genetic algorithm (GA) as a representative EA approach. To ascertain the accuracy of a GA approach, comparisons between a GA and classic OC methods were conducted in the first three case studies. The GA generated near-optima in these comparisons, comparable to the corresponding classical solutions, whilst avoiding non-trivial mathematical theory. Supported by these results, an unconventional OCP, that arguably cannot be solved using classic OC methods, was formulated in the fourth case study, and solved using a GA approach. The resulting solution was feasible and further conformed with strategies found to be successful in practice. Additionally, the GA approach was rela tively simple to apply in all case studies. These collective outcomes of demonstrated the viability of a GA as an OC method in eco logical OCPs, thereby supporting the use of an EA approach as an alternative to classic OC methods in ecological OCPs. The feasibility of an EA approach to atypical OCPs was further demonstrated, which may act to increase realism in OC applications. Further investigation in this regard is thus warranted by this study. , Thesis (MS) -- Faculty of Science, Mathematics and Applied Mathematics, 2022
- Full Text:
- Date Issued: 2022-04
An investigation into the effects of nano-carbons on the negative electrode morphology of lead acid batteries under high rate partial state of capacity cycling
- Authors: Bolo, Lukanyo
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53324 , vital:45132
- Description: New technological developments in the field of Hybrid Electric Vehicles (HEV’s), vehicle stop-start applications and electrical power utility devices have brought about new demands on the use of energy storage devices such as the Pb-acid battery. These applications require a new understanding and research into the material chemistry of the battery where it has to functionin a Partial State of Capacity Cycling (PSoCC) or High Rate Partial State of Capacity Cycling (HRPSoCC)duty. The Pb-acid battery is well known for its use in the automotive industry where it had worked for decades as a typical Starter, Lighting and Ignition (SLI) power source. However, the conventional Pb-acid battery is not suitable for the new types of vehicle demands and applications. When the Pb-lead acid battery is subjected to PSoCC conditions, very quickly excessive amount of non-conducting PbSO4crystals are formed on the negative plates of the battery that then drastically reduce its useful life in application. Over the years, researchers have shown that the small addition of certain carbon types to the negative plate active material (NAM) during battery manufacturing can reduce the sulfation effect thereby increasing its use the modern vehicle applications. This study investigated industrial manufactured cells that contained up to 0.5 % by weight two types of carbons in the NAM. These were compared to standard built cells in terms of their standard achievable capacities at various rates, their Cold Cranking Ability (CCA), their Dynamic Charge Acceptance (DCA) and a simplified PSoCC test. The carbons were classified as an activated carbon and a carbon nano-fiber and were included as a dry weight additive during the standard paste manufacturing process of the negative plate. Cells were built with a 9-plate configuration using standard expanded grid positive plates with a nominal rated capacity of 36 Ah. The cells were formed and subjected to a number of electrochemical tests, of which selected negative plates were then studied using Scanning Electron Microscopy (SEM) and Electrochemical in-situ Atomic Force Microscopy (EC-AFM). The microscopic study was then used to try and relate the observed material characteristics of the NAM with the carbons to the electrochemical results observed when testing a built cell. , Thesis (MA) --Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Bolo, Lukanyo
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53324 , vital:45132
- Description: New technological developments in the field of Hybrid Electric Vehicles (HEV’s), vehicle stop-start applications and electrical power utility devices have brought about new demands on the use of energy storage devices such as the Pb-acid battery. These applications require a new understanding and research into the material chemistry of the battery where it has to functionin a Partial State of Capacity Cycling (PSoCC) or High Rate Partial State of Capacity Cycling (HRPSoCC)duty. The Pb-acid battery is well known for its use in the automotive industry where it had worked for decades as a typical Starter, Lighting and Ignition (SLI) power source. However, the conventional Pb-acid battery is not suitable for the new types of vehicle demands and applications. When the Pb-lead acid battery is subjected to PSoCC conditions, very quickly excessive amount of non-conducting PbSO4crystals are formed on the negative plates of the battery that then drastically reduce its useful life in application. Over the years, researchers have shown that the small addition of certain carbon types to the negative plate active material (NAM) during battery manufacturing can reduce the sulfation effect thereby increasing its use the modern vehicle applications. This study investigated industrial manufactured cells that contained up to 0.5 % by weight two types of carbons in the NAM. These were compared to standard built cells in terms of their standard achievable capacities at various rates, their Cold Cranking Ability (CCA), their Dynamic Charge Acceptance (DCA) and a simplified PSoCC test. The carbons were classified as an activated carbon and a carbon nano-fiber and were included as a dry weight additive during the standard paste manufacturing process of the negative plate. Cells were built with a 9-plate configuration using standard expanded grid positive plates with a nominal rated capacity of 36 Ah. The cells were formed and subjected to a number of electrochemical tests, of which selected negative plates were then studied using Scanning Electron Microscopy (SEM) and Electrochemical in-situ Atomic Force Microscopy (EC-AFM). The microscopic study was then used to try and relate the observed material characteristics of the NAM with the carbons to the electrochemical results observed when testing a built cell. , Thesis (MA) --Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text:
- Date Issued: 2021-04
An investigation of alternative separation strategies for common chemical mixtures by means of host-guest chemistry protocols with host compounds N,N′- bis(5-phenyl-5-dibenzo[a,d]cycloheptenyl)ethylenediamine and N,N’-bis(5-phenyl-10,11- dihydro-5-dibenzo[a,d]cycloheptenyl)ethylenediamine
- Authors: Barton, Danica Brione
- Date: 2023-04
- Subjects: Ethylenediaminetetraacetic acid -- South Africa , Enzymes –Analysis
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61176 , vital:69791
- Description: In this work, the selectivity behaviour of two host compounds, namely N,N’-bis(5-phenyl-5- ibenzo[a,d]cycloheptenyl)ethylenediamine (H1) and N,N’-bis(5-phenyl-10,11-dihydro-5- ibenzo[a,d]cycloheptenyl)ethylenediamine (H2), was assessed in mixtures of difficult-toseparate compounds, including the xylenes and ethylbenzene, pyridine and methylpyridines, and anisole and methylanisoles. These host compounds were synthesized using Grignard addition reactions with phenylmagnesium bromide on dibenzo[a,d]cyclohepten-5-one and 10,11- dihydrodibenzo[a,d]cyclohepten-5-one, respectively. The resultant alcohols were treated with perchloric acid to form the corresponding perchlorate salts, which were then reacted with ethylenediamine to afford the required H1 and H2 host compounds. Yields were 95 ad 52% for this final step in each case. An investigation of the conformations, both from experiment (using single crystal X-ray diffractometry (SCXRD) on the apohost compound) and computational calculations was undertaken. Unfortunately, H1 always crystallized out as a powder unless this host compound formed a complex with a guest species, and so could not be subjected to SCXRD analysis as apohost alone. However, a single crystal structure for apohost H2 was successfully obtained and compared with computational data from a previous investigation. It was observed that the conformation of apohost H2 compared favourably with that of the lowest energy conformer from that work. In single solvent recrystallization experiments with o-, m-, p-xylene (o-Xy, m-Xy, p-Xy) and ethylbenzene (EB), both H1 and H2 formed complexes with only one of the four guest species, namely p-Xy and o-Xy, respectively. The host:guest (H:G) ratios were 1:1 for both of these complexes. In the equimolar guest/guest competition experiments, inclusion complexes only formed when p-Xy or o-Xy, respectively, were present in the mixtures; if p-Xy (for experiments with H1) or o-Xy (H2) was absent from these mixtures, only apohost was recovered from the glass vessels. Three selectivity profiles were constructed for each of these host compounds, in which each one was recrystallized from binary mixed guests in various proportions. These demonstrated an overwhelming preference of H1 for p-Xy and H2 for o-Xy, which concurred with the results from the equimolar experiments. Thermal analysis using H1∙p-Xy revealed that this complex was unstable at ambient conditions, while SCXRD explained this observation: this complex may be defined as a true clathrate since no host‧‧‧guest interactions were identified at all, and the guest was retained in the complex by means of steric factors alone. Furthermore, the guest molecules resided in wide open channels that may have facilitated the guest release process. H2∙o-Xy, on the other hand, was stable at room temperature, and the guest release event only commenced at 69.7 °C (Ton). This too was explained by SCXRD analyses in that interactions between host and guest species were observed in this case. Additionally, the guest molecules were housed in discrete cages, which made their escape more challenging compared with p-Xy in H1∙p-Xy. It was concluded that, in this guest series, both of the host compounds would be effective as separatory tools employing host-guest chemistry protocols due to their remarkable selectivities for p-Xy (H1) and o-Xy (H2). , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2023
- Full Text:
- Date Issued: 2023-04
- Authors: Barton, Danica Brione
- Date: 2023-04
- Subjects: Ethylenediaminetetraacetic acid -- South Africa , Enzymes –Analysis
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61176 , vital:69791
- Description: In this work, the selectivity behaviour of two host compounds, namely N,N’-bis(5-phenyl-5- ibenzo[a,d]cycloheptenyl)ethylenediamine (H1) and N,N’-bis(5-phenyl-10,11-dihydro-5- ibenzo[a,d]cycloheptenyl)ethylenediamine (H2), was assessed in mixtures of difficult-toseparate compounds, including the xylenes and ethylbenzene, pyridine and methylpyridines, and anisole and methylanisoles. These host compounds were synthesized using Grignard addition reactions with phenylmagnesium bromide on dibenzo[a,d]cyclohepten-5-one and 10,11- dihydrodibenzo[a,d]cyclohepten-5-one, respectively. The resultant alcohols were treated with perchloric acid to form the corresponding perchlorate salts, which were then reacted with ethylenediamine to afford the required H1 and H2 host compounds. Yields were 95 ad 52% for this final step in each case. An investigation of the conformations, both from experiment (using single crystal X-ray diffractometry (SCXRD) on the apohost compound) and computational calculations was undertaken. Unfortunately, H1 always crystallized out as a powder unless this host compound formed a complex with a guest species, and so could not be subjected to SCXRD analysis as apohost alone. However, a single crystal structure for apohost H2 was successfully obtained and compared with computational data from a previous investigation. It was observed that the conformation of apohost H2 compared favourably with that of the lowest energy conformer from that work. In single solvent recrystallization experiments with o-, m-, p-xylene (o-Xy, m-Xy, p-Xy) and ethylbenzene (EB), both H1 and H2 formed complexes with only one of the four guest species, namely p-Xy and o-Xy, respectively. The host:guest (H:G) ratios were 1:1 for both of these complexes. In the equimolar guest/guest competition experiments, inclusion complexes only formed when p-Xy or o-Xy, respectively, were present in the mixtures; if p-Xy (for experiments with H1) or o-Xy (H2) was absent from these mixtures, only apohost was recovered from the glass vessels. Three selectivity profiles were constructed for each of these host compounds, in which each one was recrystallized from binary mixed guests in various proportions. These demonstrated an overwhelming preference of H1 for p-Xy and H2 for o-Xy, which concurred with the results from the equimolar experiments. Thermal analysis using H1∙p-Xy revealed that this complex was unstable at ambient conditions, while SCXRD explained this observation: this complex may be defined as a true clathrate since no host‧‧‧guest interactions were identified at all, and the guest was retained in the complex by means of steric factors alone. Furthermore, the guest molecules resided in wide open channels that may have facilitated the guest release process. H2∙o-Xy, on the other hand, was stable at room temperature, and the guest release event only commenced at 69.7 °C (Ton). This too was explained by SCXRD analyses in that interactions between host and guest species were observed in this case. Additionally, the guest molecules were housed in discrete cages, which made their escape more challenging compared with p-Xy in H1∙p-Xy. It was concluded that, in this guest series, both of the host compounds would be effective as separatory tools employing host-guest chemistry protocols due to their remarkable selectivities for p-Xy (H1) and o-Xy (H2). , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2023
- Full Text:
- Date Issued: 2023-04
Antifungal activity of silver nanoparticles on Cryptococcus species
- Authors: Roman, Nasstasja
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Cryptococcus
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52089 , vital:43445
- Description: Cryptococcus neoformans is responsible for cryptococcal infections, which have become a great concern particularly in immunocompromised patients. This pulmonary disease causes damage to lung tissue and is presumed to be responsible for approximately 650,000 deaths annually. There is a major need for novel antimicrobial agents to avoid the emergence of resistant strains due to extended use of known antifungal drugs. Silver has become an important antimicrobial agent used in medical devices, cosmetics and even house-hold or clothing products. It is highly toxic and has a reduced risk of resistance. Silver nanoparticles have been broadly explored as an antimicrobial agent due to its high reactivity, large surface area and small size. They have been reported to display antimicrobial activity towards bacteria, viruses and fungi. C. neoformans is a pathogenic microorganism that possesses a number of virulence factors which increases the infectivity of the microorganism in immunocompromised individuals. Some of these include the presence of a polysaccharide capsule, melanin, urease and phospholipase production. Owing to limited availability of antifungal drugs and the possibility of drug resistance, this study focused on an alternative antimicrobial agent, namely silver nanoparticles, and the effects that silver nanoparticles had on fungal β-glucan, chitin and urease, phospholipase and melanin virulence factors. Results from our study show that silver nanoparticles inhibited the growth of C. neoformans at concentrations between 3.125 ƒM and 25 ƒM. Both 26.4 nm and 28.4 nm nanoparticles displayed growth inhibition, but were unable to kill the organism at concentrations of 200 ƒM and above. The silver nanoparticles caused a reduction in βglucan content. There was also an accumulation of intracellular ROS, and phospholipase activity, was reduced. In contrast, the organism displayed an increase in chitin content, melanin and urease activity upon exposure to the nanoparticles. This study shows that chemically synthesized silver nanoparticles are an effective antifungal alternative that greatly reduces or inhibits C. neoformans growth at very low concentrations (ƒM). For future studies it may be feasible to investigate the use of these nanoparticles in combination with known antifungal agents, to prevent the emergence of resistance and inhibit possible defense mechanisms displayed by the organism. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Roman, Nasstasja
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Cryptococcus
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52089 , vital:43445
- Description: Cryptococcus neoformans is responsible for cryptococcal infections, which have become a great concern particularly in immunocompromised patients. This pulmonary disease causes damage to lung tissue and is presumed to be responsible for approximately 650,000 deaths annually. There is a major need for novel antimicrobial agents to avoid the emergence of resistant strains due to extended use of known antifungal drugs. Silver has become an important antimicrobial agent used in medical devices, cosmetics and even house-hold or clothing products. It is highly toxic and has a reduced risk of resistance. Silver nanoparticles have been broadly explored as an antimicrobial agent due to its high reactivity, large surface area and small size. They have been reported to display antimicrobial activity towards bacteria, viruses and fungi. C. neoformans is a pathogenic microorganism that possesses a number of virulence factors which increases the infectivity of the microorganism in immunocompromised individuals. Some of these include the presence of a polysaccharide capsule, melanin, urease and phospholipase production. Owing to limited availability of antifungal drugs and the possibility of drug resistance, this study focused on an alternative antimicrobial agent, namely silver nanoparticles, and the effects that silver nanoparticles had on fungal β-glucan, chitin and urease, phospholipase and melanin virulence factors. Results from our study show that silver nanoparticles inhibited the growth of C. neoformans at concentrations between 3.125 ƒM and 25 ƒM. Both 26.4 nm and 28.4 nm nanoparticles displayed growth inhibition, but were unable to kill the organism at concentrations of 200 ƒM and above. The silver nanoparticles caused a reduction in βglucan content. There was also an accumulation of intracellular ROS, and phospholipase activity, was reduced. In contrast, the organism displayed an increase in chitin content, melanin and urease activity upon exposure to the nanoparticles. This study shows that chemically synthesized silver nanoparticles are an effective antifungal alternative that greatly reduces or inhibits C. neoformans growth at very low concentrations (ƒM). For future studies it may be feasible to investigate the use of these nanoparticles in combination with known antifungal agents, to prevent the emergence of resistance and inhibit possible defense mechanisms displayed by the organism. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
Antiproliferative activity of novel rhenium complexes and medicinal plant extracts
- Oosthuizen, Kenneth Thomas, Venables, Luanne
- Authors: Oosthuizen, Kenneth Thomas , Venables, Luanne
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Medicinal plants -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52028 , vital:43441
- Description: Cancer is a complex, multifactorial disease that affects millions of individuals every year. The adverse side effects and escalating costs of current therapies coupled with the increased incidence of resistance to these therapies make it imperative that we explore novel treatments for the disease. This study investigated two avenues for novel drug design namely, novel synthetic compounds and medicinal plant extracts. The benzimidazole ring system has shown potential as a scaffold for designing novel anticancer agents. Conjugation of the metal rhenium to novel variants of this ring system open up the possibility of designing novel drugs that serve both a diagnostic and a therapeutic function. This study investigated the in vitro anticancer potential of ten such complexes against selected breast and cervical cancer cell lines. The selectivity of the complexes for cancer cells over normal cells was also investigated while the mechanism of action of effective complexes was determined by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane disruption. All ten complexes were screened against MCF7 breast and HeLa cervical cancer cell lines with four showing antiproliferative activity against both cancer cell lines and one showing cell line specific toxicity against MCF7 breast cancer cells. When looking at the SAR of the compounds it was noted that activity was higher in compounds which contain two potentially bidentate benzothiazole ligands, while compounds with potentially tridentate ligands show good activity, but only if the benzothiazole moiety is not involved in coordination. The complexes showed greater antiproliferative activity against the MCF7 breast cancer cells with IC50 values ranging from 3.2 to 7.0 µM versus a range of 7.6 to 24.4 µM being obtained on the HeLa cervical cancer cells. Antiproliferative complexes were tested against confluent and log phase Vero cells at their respective IC50 values to determine their effect on “normal” cells. Confluent Vero cells showed less cell death than those in log phase indicating that the complexes show preference for proliferating cells. The mechanism of action of the complexes was studied on both cancer cell lines via cell cycle analysis and apoptosis assays investigating phosphatidylserine translocation, caspase -3 and -8 activation and mitochondrial membrane potential with most complexes inducing cell cycle arrest followed by cell death via both the extrinsic and intrinsic pathways of apoptosis. Since 1940, 49% of all the available anticancer drugs approved for cancer treatment were natural products or directly derived from natural products. Plants are an excellent source of secondary metabolites, many of which are unique chemical compounds that cannot be synthesized in a laboratory. Ethnobotanical surveys conducted in conjunction with Traditional Health Practitioners of the Mkuranga and Same districts in Tanzania identified 25 plants that are used for the treatment of cancer. Four of these plants (A. mossambicensis, C. adenocaule, C. pseudopulchelusis and R. natalensis) with ethnobotanically reported anticancer usage showed cytotoxic activity against brine shrimp and were selected for further in vitro anticancer studies. All four plants were found to have antiproliferative activity against HeLa cervical cancer cells with IC50 values ranging from 3.4 to 50.8 µg/mL. This study was also tasked with investigating the mechanism of action of C. pseudopulchelus on HeLa cervical cancer cells by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane x disruption. C. pseudopulchelus caused early M phase arrest followed by slippage and subsequent cell death via the extrinsic pathway of apoptosis. In conclusion, this study showed that both novel complexes as well as medicinal plant extracts represent an interesting avenue for the development of novel anticancer drugs that are cheaper and produce less side effects than current therapies. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Oosthuizen, Kenneth Thomas , Venables, Luanne
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Medicinal plants -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52028 , vital:43441
- Description: Cancer is a complex, multifactorial disease that affects millions of individuals every year. The adverse side effects and escalating costs of current therapies coupled with the increased incidence of resistance to these therapies make it imperative that we explore novel treatments for the disease. This study investigated two avenues for novel drug design namely, novel synthetic compounds and medicinal plant extracts. The benzimidazole ring system has shown potential as a scaffold for designing novel anticancer agents. Conjugation of the metal rhenium to novel variants of this ring system open up the possibility of designing novel drugs that serve both a diagnostic and a therapeutic function. This study investigated the in vitro anticancer potential of ten such complexes against selected breast and cervical cancer cell lines. The selectivity of the complexes for cancer cells over normal cells was also investigated while the mechanism of action of effective complexes was determined by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane disruption. All ten complexes were screened against MCF7 breast and HeLa cervical cancer cell lines with four showing antiproliferative activity against both cancer cell lines and one showing cell line specific toxicity against MCF7 breast cancer cells. When looking at the SAR of the compounds it was noted that activity was higher in compounds which contain two potentially bidentate benzothiazole ligands, while compounds with potentially tridentate ligands show good activity, but only if the benzothiazole moiety is not involved in coordination. The complexes showed greater antiproliferative activity against the MCF7 breast cancer cells with IC50 values ranging from 3.2 to 7.0 µM versus a range of 7.6 to 24.4 µM being obtained on the HeLa cervical cancer cells. Antiproliferative complexes were tested against confluent and log phase Vero cells at their respective IC50 values to determine their effect on “normal” cells. Confluent Vero cells showed less cell death than those in log phase indicating that the complexes show preference for proliferating cells. The mechanism of action of the complexes was studied on both cancer cell lines via cell cycle analysis and apoptosis assays investigating phosphatidylserine translocation, caspase -3 and -8 activation and mitochondrial membrane potential with most complexes inducing cell cycle arrest followed by cell death via both the extrinsic and intrinsic pathways of apoptosis. Since 1940, 49% of all the available anticancer drugs approved for cancer treatment were natural products or directly derived from natural products. Plants are an excellent source of secondary metabolites, many of which are unique chemical compounds that cannot be synthesized in a laboratory. Ethnobotanical surveys conducted in conjunction with Traditional Health Practitioners of the Mkuranga and Same districts in Tanzania identified 25 plants that are used for the treatment of cancer. Four of these plants (A. mossambicensis, C. adenocaule, C. pseudopulchelusis and R. natalensis) with ethnobotanically reported anticancer usage showed cytotoxic activity against brine shrimp and were selected for further in vitro anticancer studies. All four plants were found to have antiproliferative activity against HeLa cervical cancer cells with IC50 values ranging from 3.4 to 50.8 µg/mL. This study was also tasked with investigating the mechanism of action of C. pseudopulchelus on HeLa cervical cancer cells by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane x disruption. C. pseudopulchelus caused early M phase arrest followed by slippage and subsequent cell death via the extrinsic pathway of apoptosis. In conclusion, this study showed that both novel complexes as well as medicinal plant extracts represent an interesting avenue for the development of novel anticancer drugs that are cheaper and produce less side effects than current therapies. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
Aspects of the ecology and biology of Gilchristella aestuarius (G & T) (Pisces: Clupeidae) in the Swartkops estuary, Port Elizabeth
- Talbot, Marie Marcel Jean-Francois
- Authors: Talbot, Marie Marcel Jean-Francois
- Date: 1982-12
- Subjects: Fishes -- Ecology -- South Africa -- Swartkops River Estuary , Swartkops River Estuary (South Africa)
- Language: English
- Type: Master's theses , Manuscripct
- Identifier: http://hdl.handle.net/10948/52352 , vital:43613
- Description: The Department of Zoology at the University of Port Elizabeth has an ongoing programme on the Swartkops estuary with the eventual aim of drawing up the energy pathways of the system. Marais (1976) has investigated the nutritional ecology of the grunter Pommadasys cormersoni while Melville-Smith (1978) and Melville-Smith and Baird (1981) reported on the ecology of larval fish. Winter (1979) studied the ecological parameters of fish populations, but this work was not a detailed account of each population. Wooldridge (1979) studied components of the 3 zooplankton community in some detail. It became evident that there was a significant lack of understanding of the ecological relationships between plankton and piscivorous fish, which was crucial to the elucidation of the interactions and trophodynamics of the Swartkops estuarine system. Since G. aestuarius is an important link in the energy pathway from the plankton to the nekton, and in terms of numbers dominates the seine net catches made in the estuary (Winter, 1979), this study was motivated. The aim was to investigate the important biological parameters of the estuarine round herring population namely the population structure, distribution and abundance, individual growth rate from field data, the food and feeding habits, reproduction and respiration, all of which are essential for the understanding of the dynamics of a species. These parameters were later converted into energy terms and the construction of an energy budget was attempted. , Thesis (MSc) -- Faculty of Science, 1982
- Full Text:
- Date Issued: 1982-12
- Authors: Talbot, Marie Marcel Jean-Francois
- Date: 1982-12
- Subjects: Fishes -- Ecology -- South Africa -- Swartkops River Estuary , Swartkops River Estuary (South Africa)
- Language: English
- Type: Master's theses , Manuscripct
- Identifier: http://hdl.handle.net/10948/52352 , vital:43613
- Description: The Department of Zoology at the University of Port Elizabeth has an ongoing programme on the Swartkops estuary with the eventual aim of drawing up the energy pathways of the system. Marais (1976) has investigated the nutritional ecology of the grunter Pommadasys cormersoni while Melville-Smith (1978) and Melville-Smith and Baird (1981) reported on the ecology of larval fish. Winter (1979) studied the ecological parameters of fish populations, but this work was not a detailed account of each population. Wooldridge (1979) studied components of the 3 zooplankton community in some detail. It became evident that there was a significant lack of understanding of the ecological relationships between plankton and piscivorous fish, which was crucial to the elucidation of the interactions and trophodynamics of the Swartkops estuarine system. Since G. aestuarius is an important link in the energy pathway from the plankton to the nekton, and in terms of numbers dominates the seine net catches made in the estuary (Winter, 1979), this study was motivated. The aim was to investigate the important biological parameters of the estuarine round herring population namely the population structure, distribution and abundance, individual growth rate from field data, the food and feeding habits, reproduction and respiration, all of which are essential for the understanding of the dynamics of a species. These parameters were later converted into energy terms and the construction of an energy budget was attempted. , Thesis (MSc) -- Faculty of Science, 1982
- Full Text:
- Date Issued: 1982-12
Assessing community engagement programmes to mitigate uncontrolled, deliberately ignited fires in forestry plantation-communal land interface, Kwazulu-Natal, South Africa
- Authors: Ramantswana, Nontethelelo
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Forest fires -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52008 , vital:43439
- Description: Forestry plantations in South Africa are surrounded by poor local communities that normally depend on the forestry resources for subsistence. This interface area is faced with human induced uncontrolled fires. There is a lack of understanding regarding the reasons for deliberate ignition of uncontrolled fires. There is also lack of information on the success of community engagement programs (CEPs) as fire protection intervention and / or their implementation barriers. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Ramantswana, Nontethelelo
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Forest fires -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52008 , vital:43439
- Description: Forestry plantations in South Africa are surrounded by poor local communities that normally depend on the forestry resources for subsistence. This interface area is faced with human induced uncontrolled fires. There is a lack of understanding regarding the reasons for deliberate ignition of uncontrolled fires. There is also lack of information on the success of community engagement programs (CEPs) as fire protection intervention and / or their implementation barriers. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
Assessing diatom community composition and structure in palaeosediments of a southern Cape coastal wetland
- Authors: Sepato, Tshiamo Tsholofelo
- Date: 2023-04
- Subjects: Diatoms --South Africa – Southern Cape , Paleoecology , Marine algae --South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61258 , vital:69847
- Description: Palaeoenvironmental studies are important as they aid in reconstructing histories of past landscapes and provide key long-term information for the conservation and management of ecosystems. The southern Cape coast is a focus area for palaeoenvironmental research due to its high botanical and climatic importance. A three-metre sediment core was retrieved from Whale Rock wetland (Plettenberg Bay, southern Cape Coast) and spanned ~8000 years – a large proportion of the Holocene epoch. Diatom data preserved in palaeosediments of the Whale Rock wetland are presented within this study. A total of 48 diatom species was identified. Based on the multivariate statistical analysis, the diatom assemblages were divided into three zones: Zone WR-1-A (~7200 – 6450 cal yr BP); Zone WR-1- B (~6450 – 6250 cal yr BP) and Zone WR-1-C (~250 cal yr BP – to present). Two diatom preservation hiatus periods were observed at ~8000 – 7200 cal yr BP and ~6400 – 230 cal yr BP. The results indicated that benthic diatom species were significantly dominant throughout the Whale Rock record. The diatom evidence revealed that the Whale Rock wetland system freshened over time as diatom species identified in Zone WR-1-A and Zone WR-1- B indicated marine influences whereas Zone WR-1-C displayed a dominance of species that thrive in freshwater conditions. A transitional phase occurred at ~6400 cal yr BP where abrupt changes began prior to the significant ~6400 – 230 cal yr BP diatom preservation hiatus period. Principal Component Analysis showed that salinity was the main environmental driver of change impacting the species abundance and diversity of diatom communities within the wetland system throughout the Holocene. When compared with regional palaeoenvironmental and palaeolimnological data, it is evident that several other wetland systems moved from a marine/brackish favoured system to a freshwater system with the transitional phase occurring at different periods within the Holocene. This study indicated that diatoms are powerful biological proxies of environmental change. It is recommended that the site be revisited to investigate further the hiatus phases to further explore the lack of diatom preservation for these periods and to also contribute more palaeoenvironmental proxy evidence as well as modern hydrological information. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2023-04
- Authors: Sepato, Tshiamo Tsholofelo
- Date: 2023-04
- Subjects: Diatoms --South Africa – Southern Cape , Paleoecology , Marine algae --South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61258 , vital:69847
- Description: Palaeoenvironmental studies are important as they aid in reconstructing histories of past landscapes and provide key long-term information for the conservation and management of ecosystems. The southern Cape coast is a focus area for palaeoenvironmental research due to its high botanical and climatic importance. A three-metre sediment core was retrieved from Whale Rock wetland (Plettenberg Bay, southern Cape Coast) and spanned ~8000 years – a large proportion of the Holocene epoch. Diatom data preserved in palaeosediments of the Whale Rock wetland are presented within this study. A total of 48 diatom species was identified. Based on the multivariate statistical analysis, the diatom assemblages were divided into three zones: Zone WR-1-A (~7200 – 6450 cal yr BP); Zone WR-1- B (~6450 – 6250 cal yr BP) and Zone WR-1-C (~250 cal yr BP – to present). Two diatom preservation hiatus periods were observed at ~8000 – 7200 cal yr BP and ~6400 – 230 cal yr BP. The results indicated that benthic diatom species were significantly dominant throughout the Whale Rock record. The diatom evidence revealed that the Whale Rock wetland system freshened over time as diatom species identified in Zone WR-1-A and Zone WR-1- B indicated marine influences whereas Zone WR-1-C displayed a dominance of species that thrive in freshwater conditions. A transitional phase occurred at ~6400 cal yr BP where abrupt changes began prior to the significant ~6400 – 230 cal yr BP diatom preservation hiatus period. Principal Component Analysis showed that salinity was the main environmental driver of change impacting the species abundance and diversity of diatom communities within the wetland system throughout the Holocene. When compared with regional palaeoenvironmental and palaeolimnological data, it is evident that several other wetland systems moved from a marine/brackish favoured system to a freshwater system with the transitional phase occurring at different periods within the Holocene. This study indicated that diatoms are powerful biological proxies of environmental change. It is recommended that the site be revisited to investigate further the hiatus phases to further explore the lack of diatom preservation for these periods and to also contribute more palaeoenvironmental proxy evidence as well as modern hydrological information. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2023-04
Assessing the Role of Women on Small-Scale Agribusiness at Wincanton Estate in Kariega, South Africa
- Authors: Zalwango, Joanita
- Date: 2023-04
- Subjects: Leadership in women , Women in agriculture --Eastern Cape – Kariega , Climate change -- Kariega
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61054 , vital:69690
- Description: Agricultural development is a prerequisite for most economies to grow. Agricultural activities are key to food security and sustaining livelihoods globally. Within the African continent, more women are employed in agriculture and agribusiness activities than other sectors. As main contributors to the labour force in the agricultural sector, women get involved in many agricultural and agribusiness activities to sustain their families. With over 60% of women in Sub–Saharan Africa involved in agriculture, there is need to explore and assess the role they play in promoting agribusiness with special focus on Kariega, in South Africa. The identified participants in the study, as self-employed farmers, participate in agribusiness, thereby creating employment opportunities whilst generating personal incomes. Several benefits to female involvement in agribusiness were identified, including the ability to sustain families, stable cash flow, and empowerment. Several challenges were identified, including adequate capital, inaccessibility to private land, droughts, water scarcity, climate change effects and stigmatisation. Through a feminist qualitative methodology, the study utilised semi- structured interviews to collect data from 10 women involved in agribusiness around Kariega, Nelson Mandela Bay. Themes from the findings are analysed to highlight the important role played by women toward agribusiness, their achievements, government and private sector role and the hinderances still faced by these women in agricultural cooperatives. Discussion from the analysis included a framework of recommendations, for policy makers, development practitioners and future researchers. The study found that all stakeholders involved in the agricultural sector should work together for sustainable agricultural development and sustainable development goals to be achieved. Sustainability among women farmers can be achieved by (a) Increasing government intervention and support (b) Climate smart agriculture practices (c) Overcoming stigmatisation (d) Encouraging and involving the youth (e) Diversification and integration of farm businesses and (f) Using contract farming. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2023
- Full Text: false
- Date Issued: 2023-04
Assessing the Role of Women on Small-Scale Agribusiness at Wincanton Estate in Kariega, South Africa
- Authors: Zalwango, Joanita
- Date: 2023-04
- Subjects: Leadership in women , Women in agriculture --Eastern Cape – Kariega , Climate change -- Kariega
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61054 , vital:69690
- Description: Agricultural development is a prerequisite for most economies to grow. Agricultural activities are key to food security and sustaining livelihoods globally. Within the African continent, more women are employed in agriculture and agribusiness activities than other sectors. As main contributors to the labour force in the agricultural sector, women get involved in many agricultural and agribusiness activities to sustain their families. With over 60% of women in Sub–Saharan Africa involved in agriculture, there is need to explore and assess the role they play in promoting agribusiness with special focus on Kariega, in South Africa. The identified participants in the study, as self-employed farmers, participate in agribusiness, thereby creating employment opportunities whilst generating personal incomes. Several benefits to female involvement in agribusiness were identified, including the ability to sustain families, stable cash flow, and empowerment. Several challenges were identified, including adequate capital, inaccessibility to private land, droughts, water scarcity, climate change effects and stigmatisation. Through a feminist qualitative methodology, the study utilised semi- structured interviews to collect data from 10 women involved in agribusiness around Kariega, Nelson Mandela Bay. Themes from the findings are analysed to highlight the important role played by women toward agribusiness, their achievements, government and private sector role and the hinderances still faced by these women in agricultural cooperatives. Discussion from the analysis included a framework of recommendations, for policy makers, development practitioners and future researchers. The study found that all stakeholders involved in the agricultural sector should work together for sustainable agricultural development and sustainable development goals to be achieved. Sustainability among women farmers can be achieved by (a) Increasing government intervention and support (b) Climate smart agriculture practices (c) Overcoming stigmatisation (d) Encouraging and involving the youth (e) Diversification and integration of farm businesses and (f) Using contract farming. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2023
- Full Text: false
- Date Issued: 2023-04
Bayesian tolerance intervals and their application to ballistic grouping consistency in competitive shooting
- Authors: Gardiner, Marcell
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Bayesian statistical decision theory -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52456 , vital:43662
- Description: Competitive shooting has become immensely popular since the first modern Games held in 1896. Competitive shooting remains the fastest growing segment in the firearm industry, catering to individuals of all ages. Elite shooters are capable of reaching extreme levels of precision and accuracy, despite many factors existing that affect performance in Olympic shooting. One such factor is speed variability, which is dependent on the mass of the bullet, how constant is the lead being used, and, how constant the gunpowder is. The study focusses on the Bayesian simulation method proposed by Wolfinger (1998) for determining three kinds of tolerance intervals when applied to competitive shooting data, particularly examining speed variability. These tolerance intervals included the (𝛼𝛼,𝛿𝛿) tolerance interval (where 𝛼𝛼 is the content and 𝛿𝛿 is the confidence), the 𝛼𝛼 - expectation tolerance interval (where 𝛼𝛼 is the expected coverage of the interval) and the fixed-in advance tolerance interval in which the interval is held fixed and the proportion of process measurements it contains, is estimated. Speed measurements of individual shots fired were measured with either an Oeler 35P or Magneto Speed V3 chronograph and the data was fitted to a one-way random effects model. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Gardiner, Marcell
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Bayesian statistical decision theory -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52456 , vital:43662
- Description: Competitive shooting has become immensely popular since the first modern Games held in 1896. Competitive shooting remains the fastest growing segment in the firearm industry, catering to individuals of all ages. Elite shooters are capable of reaching extreme levels of precision and accuracy, despite many factors existing that affect performance in Olympic shooting. One such factor is speed variability, which is dependent on the mass of the bullet, how constant is the lead being used, and, how constant the gunpowder is. The study focusses on the Bayesian simulation method proposed by Wolfinger (1998) for determining three kinds of tolerance intervals when applied to competitive shooting data, particularly examining speed variability. These tolerance intervals included the (𝛼𝛼,𝛿𝛿) tolerance interval (where 𝛼𝛼 is the content and 𝛿𝛿 is the confidence), the 𝛼𝛼 - expectation tolerance interval (where 𝛼𝛼 is the expected coverage of the interval) and the fixed-in advance tolerance interval in which the interval is held fixed and the proportion of process measurements it contains, is estimated. Speed measurements of individual shots fired were measured with either an Oeler 35P or Magneto Speed V3 chronograph and the data was fitted to a one-way random effects model. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-04