Early stage ichthyofauna from shallow water habitats of the Angola-Benguela frontal zone
- Authors: Farthing, Matthew William
- Date: 2017
- Subjects: Fishes -- Larvae -- South Africa -- Atlantic coast , Fishes -- Larvae -- Angola -- Atlantic coast , Striped mullet -- Angola -- Atlantic coast
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/50442 , vital:25988
- Description: Early stage fishes (larvae and early juveniles) were collected from an array of shallow water (±1.5m) habitats on the warm-temperate southern Angolan coastline between June 2014 and June 2015. This study, the first assessment of the early stages of coastal fishes in Angola, provides important new understanding of non-estuarine shallow water nursery habitat use by coastal fishes from the region. In total, 51 species from 18 teleost families were observed. The exposed surf zone was dominated by postflexion larvae, while the moderately exposed beach and sheltered bay were dominated by early juveniles. Both fish density and diversity peaked in the wet season (Feb – Apr 2015) for all habitats, attributed to the influx of summer spawning species. Diplodus sargus dominated catches from the exposed surf zone, and the timing of observations supports the growing consensus that sparid spawning is dictated by temperature, not season. The similitude of the observed species to those observed in warm temperate South Africa highlights the historical connection of the warm-temperate study area with warm-temperate South Africa, prior to the formation of the Benguela Current as a vicariant barrier. The classification of the study assemblage into established estuarine utilization categories showed that the surf zone hosted more exclusively marine species than comparable surf zones in South Africa, attributed to the absence of estuaries in southern Angola. However, the observation of the marine estuarine dependent Mugil cephalus in this study area devoid of estuaries suggests that estuarine dependency may be regionally specific for some taxa. It appears that the warm, sheltered, nutrient rich waters of Tombua Bay provide typically estuarine associated taxa with a suitable alternative, non-estuarine nursery habitat. This study provides evidence that the importance of estuaries as critical nursery habitats has been overemphasized for some warm-temperate coastal fishes. However, the absence of other marine estuarine dependent species from the study area suggests that some warm-temperate taxa do intrinsically rely on estuarine function for survival.
- Full Text:
- Date Issued: 2017
- Authors: Farthing, Matthew William
- Date: 2017
- Subjects: Fishes -- Larvae -- South Africa -- Atlantic coast , Fishes -- Larvae -- Angola -- Atlantic coast , Striped mullet -- Angola -- Atlantic coast
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/50442 , vital:25988
- Description: Early stage fishes (larvae and early juveniles) were collected from an array of shallow water (±1.5m) habitats on the warm-temperate southern Angolan coastline between June 2014 and June 2015. This study, the first assessment of the early stages of coastal fishes in Angola, provides important new understanding of non-estuarine shallow water nursery habitat use by coastal fishes from the region. In total, 51 species from 18 teleost families were observed. The exposed surf zone was dominated by postflexion larvae, while the moderately exposed beach and sheltered bay were dominated by early juveniles. Both fish density and diversity peaked in the wet season (Feb – Apr 2015) for all habitats, attributed to the influx of summer spawning species. Diplodus sargus dominated catches from the exposed surf zone, and the timing of observations supports the growing consensus that sparid spawning is dictated by temperature, not season. The similitude of the observed species to those observed in warm temperate South Africa highlights the historical connection of the warm-temperate study area with warm-temperate South Africa, prior to the formation of the Benguela Current as a vicariant barrier. The classification of the study assemblage into established estuarine utilization categories showed that the surf zone hosted more exclusively marine species than comparable surf zones in South Africa, attributed to the absence of estuaries in southern Angola. However, the observation of the marine estuarine dependent Mugil cephalus in this study area devoid of estuaries suggests that estuarine dependency may be regionally specific for some taxa. It appears that the warm, sheltered, nutrient rich waters of Tombua Bay provide typically estuarine associated taxa with a suitable alternative, non-estuarine nursery habitat. This study provides evidence that the importance of estuaries as critical nursery habitats has been overemphasized for some warm-temperate coastal fishes. However, the absence of other marine estuarine dependent species from the study area suggests that some warm-temperate taxa do intrinsically rely on estuarine function for survival.
- Full Text:
- Date Issued: 2017
Apparent digestibility coefficients of feed ingredients and essential amino acid requirements of dusky kob (Argyrosomus japonicus)
- Authors: Adesola, Abidemi Adejoke
- Date: 2017
- Subjects: Amino acids in animal nutrition , Fishes -- Feeding and feeds , Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Nutrition , Argyrosomus -- Nutrition , Argyrosomus japonicus -- Feeding and feeds , Argyrosomus -- Feeding and feeds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/32140 , vital:24014
- Description: Important to the evaluation of potential feed ingredients for inclusion in fish diets should be their digestibility and amino acid requirement so that feeds can be formulated on a digestible basis rather than a gross nutrient basis. This thesis established techniques for faecal collection, the validity of digestibility markers, it determined apparent digestibility coefficients for various novel feed ingredients, and it established the optimal lysine requirement for Argyrosomus japonicus, which was used to estimate each of the essential amino acid requirements by using the ideal protein concept. There were no significant differences in dry matter apparent digestibility coefficients when faeces were collected by stripping (77.0 %), dissection (80.1 %) or settlement (83.5 %). Faecal collection by the settlement method produced the most reliable digestibility data. Apparent digestibility coefficients for dry matter, crude protein and energy calculated using acid-insoluble ash were higher (84.0 %, 93.2 % and 93.0 %, respectively) than those using chromic oxide (55.7 %, 79.1 % and 78.2 %) and titanium dioxide (58.6 %, 79.7 % and 80.5 %). The magnitude of variation in digestibility coefficients obtained using acid-insoluble ash was always lower than that obtained with the other markers. Therefore, acid-insoluble ash was preferred as a dietary marker. Using the above protocol, protein and amino acid digestibility of some animal and plant protein ingredients were evaluated in a series of experiments. The first trial compared the apparent digestibility coefficients of some animal products included as single protein source in the test diets. Apparent protein digestibility values were 84.5 %, 83.8 %, 85.8 % and 83.1 % for fishmeal-prime, fishmeal-standard, poultry meal and pork meal, respectively. Apparent digestibility coefficients for poultry meal were comparable to those of fishmeal, which indicate its potential as a substitute for fishmeal in the diets of A. japonicus. The second trial determined the apparent coefficients of plant and animal protein sources included at 30 % into a practical reference diet (70 %). Apparent protein digestibility ranged from 92.4 % in sunflower meal to 85.5 % in corn gluten meal. Soybean meal is a promising feed ingredient in A. japonicus due to the high apparent digestibility of its protein (92.0 %) and essential amino acid digestibility (mean average 91.4 %). A fundamental assumption in fish feed formulation is that the digestibility of nutrients is additive, i.e., digestibility of a nutrient in one ingredient does not interact with the digestibility of the same nutrient in another ingredient. In the third trial, additivity of feed ingredients was tested using pork meal and poultry meal. The results indicate that the apparent digestibility coefficient of animal protein ingredients could be calculated from compound diets to accurately determine protein and amino acid digestibility in A. japonicus, and possibly other carnivorous fish species. Dietary essential amino acid requirements were determined for juvenile A. japonicus in two trials. A dose-response study was conducted using crystalline lysine to determine the optimal requirement of dietary lysine for A. japonicus. Optimal dietary lysine was estimated at 31.7 g kg-¹ dry diet, corresponding to 73.5 g kg-¹ of dietary protein, based on specific growth rate and broken-line segmented regression analyses. Dietary requirements for other essential amino acids ranged from 22 g kg-¹ (histidine) to 71 g kg-¹ (leucine) crude protein. The results of the present study provided a research tool that could be used to assess and verify the conclusions of earlier dietary work on A. japonicus and in further studies to develop least cost diet formulations for this species. The study also adds to the knowledge of the nutritional requirements of A. japonicus by providing information on the digestibility of plants and animal protein ingredients. It also contributes to future dietary research for this species because this study determines, for the first time, the most suitable methods for investigating the digestibility of raw materials for A. japonicus.
- Full Text:
- Date Issued: 2017
- Authors: Adesola, Abidemi Adejoke
- Date: 2017
- Subjects: Amino acids in animal nutrition , Fishes -- Feeding and feeds , Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Nutrition , Argyrosomus -- Nutrition , Argyrosomus japonicus -- Feeding and feeds , Argyrosomus -- Feeding and feeds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/32140 , vital:24014
- Description: Important to the evaluation of potential feed ingredients for inclusion in fish diets should be their digestibility and amino acid requirement so that feeds can be formulated on a digestible basis rather than a gross nutrient basis. This thesis established techniques for faecal collection, the validity of digestibility markers, it determined apparent digestibility coefficients for various novel feed ingredients, and it established the optimal lysine requirement for Argyrosomus japonicus, which was used to estimate each of the essential amino acid requirements by using the ideal protein concept. There were no significant differences in dry matter apparent digestibility coefficients when faeces were collected by stripping (77.0 %), dissection (80.1 %) or settlement (83.5 %). Faecal collection by the settlement method produced the most reliable digestibility data. Apparent digestibility coefficients for dry matter, crude protein and energy calculated using acid-insoluble ash were higher (84.0 %, 93.2 % and 93.0 %, respectively) than those using chromic oxide (55.7 %, 79.1 % and 78.2 %) and titanium dioxide (58.6 %, 79.7 % and 80.5 %). The magnitude of variation in digestibility coefficients obtained using acid-insoluble ash was always lower than that obtained with the other markers. Therefore, acid-insoluble ash was preferred as a dietary marker. Using the above protocol, protein and amino acid digestibility of some animal and plant protein ingredients were evaluated in a series of experiments. The first trial compared the apparent digestibility coefficients of some animal products included as single protein source in the test diets. Apparent protein digestibility values were 84.5 %, 83.8 %, 85.8 % and 83.1 % for fishmeal-prime, fishmeal-standard, poultry meal and pork meal, respectively. Apparent digestibility coefficients for poultry meal were comparable to those of fishmeal, which indicate its potential as a substitute for fishmeal in the diets of A. japonicus. The second trial determined the apparent coefficients of plant and animal protein sources included at 30 % into a practical reference diet (70 %). Apparent protein digestibility ranged from 92.4 % in sunflower meal to 85.5 % in corn gluten meal. Soybean meal is a promising feed ingredient in A. japonicus due to the high apparent digestibility of its protein (92.0 %) and essential amino acid digestibility (mean average 91.4 %). A fundamental assumption in fish feed formulation is that the digestibility of nutrients is additive, i.e., digestibility of a nutrient in one ingredient does not interact with the digestibility of the same nutrient in another ingredient. In the third trial, additivity of feed ingredients was tested using pork meal and poultry meal. The results indicate that the apparent digestibility coefficient of animal protein ingredients could be calculated from compound diets to accurately determine protein and amino acid digestibility in A. japonicus, and possibly other carnivorous fish species. Dietary essential amino acid requirements were determined for juvenile A. japonicus in two trials. A dose-response study was conducted using crystalline lysine to determine the optimal requirement of dietary lysine for A. japonicus. Optimal dietary lysine was estimated at 31.7 g kg-¹ dry diet, corresponding to 73.5 g kg-¹ of dietary protein, based on specific growth rate and broken-line segmented regression analyses. Dietary requirements for other essential amino acids ranged from 22 g kg-¹ (histidine) to 71 g kg-¹ (leucine) crude protein. The results of the present study provided a research tool that could be used to assess and verify the conclusions of earlier dietary work on A. japonicus and in further studies to develop least cost diet formulations for this species. The study also adds to the knowledge of the nutritional requirements of A. japonicus by providing information on the digestibility of plants and animal protein ingredients. It also contributes to future dietary research for this species because this study determines, for the first time, the most suitable methods for investigating the digestibility of raw materials for A. japonicus.
- Full Text:
- Date Issued: 2017
Treatment of anaerobically digested brewery effluent in high rate algal ponds: an understanding of the microbial community structure in the ponds and the underlying mechanisms responsible for nutrient removal from the effluent
- Authors: Mogane, Mmathabo Lucretia
- Date: 2017
- Subjects: Brewing industry -- Waste disposal -- South Africa , Breweries -- Waste displosal -- South Africa , Algae culture -- South Africa , Water -- Purification -- South Africa , Sewage lagoons -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5026 , vital:20754
- Full Text:
- Date Issued: 2017
- Authors: Mogane, Mmathabo Lucretia
- Date: 2017
- Subjects: Brewing industry -- Waste disposal -- South Africa , Breweries -- Waste displosal -- South Africa , Algae culture -- South Africa , Water -- Purification -- South Africa , Sewage lagoons -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5026 , vital:20754
- Full Text:
- Date Issued: 2017
Population genomics analysis of yellowfin tuna Thunnus albacares off South Africa reveals need for a shifted management boundary
- Authors: Mullins, Rachel Brenna
- Date: 2017
- Subjects: Yellowfin tuna fisheries -- South Africa -- Western Cape , Genomics , Tuna fisheries -- South Africa , Fishery management -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/57819 , vital:26992
- Description: Yellowfin tuna Thunnus albacares is a commercially and economically important fisheries species, which comprises the second largest component of South Africa’s catch of tuna and tuna-like species. Catches of the species off South Africa are treated as two discrete stocks by the two tuna Regional Fisheries Management Organisations (tRFMOs) under whose jurisdictions they fall. Individuals caught off the Western Cape, west of the boundary between the tRFMOs at 20°E, are included in assessment and management of the Atlantic Ocean yellowfin tuna stock by the International Commission for the Conservation of Atlantic Tunas (ICCAT), and those caught east of this boundary are assessed and managed as part of the Indian Ocean stock by the Indian Ocean Tuna Commission (IOTC). The boundary between these stocks is based on the confluence of the two oceans in this region and does not incorporate the population structure of species. For sustainable exploitation of fisheries resources, it is important that the definition of management stocks reflects species’ biological population structure; the fine-scale stock structure of yellowfin tuna off South Africa is therefore a research priority which this study aimed to address by means of population genomics analyses. Yellowfin tuna exhibit shallow genetic differentiation over wide geographic areas, and as such traditional population genetic approaches have limited power in resolving fishery significant population structure in the species. Herein, a population genomic approach was employed, specifically, genome-wide analysis of single nucleotide polymorphisms (SNPs) discovered using a next-generation DNA sequencing approach, to confer (i) increased statistical power to detect neutral structuring reflecting population connectivity patterns and (ii) signatures of local adaptation. The mitochondrial Control Region (mtDNA CR) was also sequenced to compare the resolving power of different approaches and to permit coalescent based analyses of the species evolutionary history in the region. Neutral SNP loci revealed significant structure within the dataset (Fst=0.0043; P<0.0001); partitioning of this differentiation within the dataset indicated significant differentiation between yellowfin tuna from the Western Cape and the Gulf of Guinea in the eastern Atlantic Ocean, with no significant differentiation between individuals from the Western Cape and Western Indian Ocean regions. This indicates two population units wherein there is a separation of the Gulf of Guinea from the remaining samples (Indian Ocean including Western Cape) that are largely derived from a single genetic population. This pattern was also supported by assignment tests. Positive outlier SNPs, exhibiting signatures of diversifying selection, suggest that individuals from these regions may be locally adapted, as well as demographically isolated. The mtDNA CR did not reveal any significant genetic structure among samples (Fst=0.0030; P=0.309), demonstrating the increased resolving power provided by population genomics approaches, but revealed signatures of historical demographic fluctuations associated with glacial cycles. Based on the findings of this study, it is suggested that yellowfin tuna caught off the Western Cape of South Africa are migrants from the Indian Ocean population, exhibiting significant genetic differentiation from the Atlantic Ocean Gulf of Guinea individuals, and should thus be included in the assessment and management of the Indian Ocean stock. It is therefore recommended that the boundary between the Atlantic and Indian Ocean yellowfin tuna stocks, under the mandates of ICCAT and the IOTC respectively, should be shifted to approximately 13.35°E to include all individuals caught in South African waters in the Indian Ocean stock.
- Full Text:
- Date Issued: 2017
- Authors: Mullins, Rachel Brenna
- Date: 2017
- Subjects: Yellowfin tuna fisheries -- South Africa -- Western Cape , Genomics , Tuna fisheries -- South Africa , Fishery management -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/57819 , vital:26992
- Description: Yellowfin tuna Thunnus albacares is a commercially and economically important fisheries species, which comprises the second largest component of South Africa’s catch of tuna and tuna-like species. Catches of the species off South Africa are treated as two discrete stocks by the two tuna Regional Fisheries Management Organisations (tRFMOs) under whose jurisdictions they fall. Individuals caught off the Western Cape, west of the boundary between the tRFMOs at 20°E, are included in assessment and management of the Atlantic Ocean yellowfin tuna stock by the International Commission for the Conservation of Atlantic Tunas (ICCAT), and those caught east of this boundary are assessed and managed as part of the Indian Ocean stock by the Indian Ocean Tuna Commission (IOTC). The boundary between these stocks is based on the confluence of the two oceans in this region and does not incorporate the population structure of species. For sustainable exploitation of fisheries resources, it is important that the definition of management stocks reflects species’ biological population structure; the fine-scale stock structure of yellowfin tuna off South Africa is therefore a research priority which this study aimed to address by means of population genomics analyses. Yellowfin tuna exhibit shallow genetic differentiation over wide geographic areas, and as such traditional population genetic approaches have limited power in resolving fishery significant population structure in the species. Herein, a population genomic approach was employed, specifically, genome-wide analysis of single nucleotide polymorphisms (SNPs) discovered using a next-generation DNA sequencing approach, to confer (i) increased statistical power to detect neutral structuring reflecting population connectivity patterns and (ii) signatures of local adaptation. The mitochondrial Control Region (mtDNA CR) was also sequenced to compare the resolving power of different approaches and to permit coalescent based analyses of the species evolutionary history in the region. Neutral SNP loci revealed significant structure within the dataset (Fst=0.0043; P<0.0001); partitioning of this differentiation within the dataset indicated significant differentiation between yellowfin tuna from the Western Cape and the Gulf of Guinea in the eastern Atlantic Ocean, with no significant differentiation between individuals from the Western Cape and Western Indian Ocean regions. This indicates two population units wherein there is a separation of the Gulf of Guinea from the remaining samples (Indian Ocean including Western Cape) that are largely derived from a single genetic population. This pattern was also supported by assignment tests. Positive outlier SNPs, exhibiting signatures of diversifying selection, suggest that individuals from these regions may be locally adapted, as well as demographically isolated. The mtDNA CR did not reveal any significant genetic structure among samples (Fst=0.0030; P=0.309), demonstrating the increased resolving power provided by population genomics approaches, but revealed signatures of historical demographic fluctuations associated with glacial cycles. Based on the findings of this study, it is suggested that yellowfin tuna caught off the Western Cape of South Africa are migrants from the Indian Ocean population, exhibiting significant genetic differentiation from the Atlantic Ocean Gulf of Guinea individuals, and should thus be included in the assessment and management of the Indian Ocean stock. It is therefore recommended that the boundary between the Atlantic and Indian Ocean yellowfin tuna stocks, under the mandates of ICCAT and the IOTC respectively, should be shifted to approximately 13.35°E to include all individuals caught in South African waters in the Indian Ocean stock.
- Full Text:
- Date Issued: 2017
Estuary-dependency and multiple habitat connectivity of juvenile leervis lichia amia (pisces: carangidae) and the factors influencing their movements
- Authors: Murray, Taryn Sara
- Date: 2017
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/4477 , vital:20676
- Description: Estuaries are highly productive ecosystems that provide an important nursery function to many marine-spawning fish species. While in estuaries, the juveniles of estuary-associated fishes are exposed to frequent, abrupt changes in environmental conditions and, as such, utilise movement as a strategy to cope with the changing conditions. Therefore, to gain a better understanding of the importance of estuaries (i.e. estuary-dependency) to estuary-associated species, knowledge on their movement patterns within estuaries, the links between habitats, and the environmental and cyclical processes driving these movements, is necessary. Lichia amia, commonly known as leervis or garrick in southern Africa, is an over-exploited, estuary-dependent fishery species targeted by coastal recreational and subsistence fishers, as well as spearfishers, throughout its South African distribution. Aspects of its biology and life history have been assessed; however, knowledge on its movement behaviour is limited to a single conventional dart tagging study, which described large-scale coastal movements of juvenile, sub-adult and adult leervis. As such, little is known about area use and movement patterns within estuaries, or the degree of connectivity between estuarine and marine habitats. Therefore, the aim of this study, using conventional dart tagging and passive acoustic telemetry methods, was to assess the role of estuarine nursery habitats in the life cycle of the leervis by examining area use patterns and movement behaviour within estuaries, investigating the degree of habitat connectivity, and determining the drivers (cyclical rhythms and environmental variables) of estuarine use and connectivity. A dedicated conventional mark-recapture study on juvenile leervis within the Swartkops Estuary revealed a high level of estuarine fidelity (philopatry) suggesting that estuaries are important nursery habitats. However, movement distances increased with increasing fish length, with some fish also being recaptured in the neighbouring marine environment. These results provided evidence of an ontogenetic habitat shift, with smaller fish remaining in the estuary for extended periods and larger individuals undertaking more extensive movements. Complementary passive acoustic telemetry studies were conducted in the Kowie and Goukou estuaries, spaced 620 km apart, to assess area use, movement patterns, residency and multiple habitat connectivity of juvenile leervis. These telemetry studies showed varying levels of residency within the tagging estuaries, and seasonal variation in area use. The lengths of estuary used by leervis tagged in the Kowie Estuary generally decreased with the onset of austral winter, while fish tagged in the Goukou Estuary generally moved into the marine environment. Despite tagged individuals spending on average 56% and 38% of the total monitoring periods within the Kowie and Goukou estuaries, respectively, fish displayed high levels of multiple habitat connectivity, with 71% and 76% of Kowie and Goukou fish, respectively, visiting adjacent marine and estuarine environments. A total of 11 different neighbouring habitats (estuaries and ports) were visited by Kowie fish, while fish tagged in the Goukou Estuary only visited four adjacent habitats. These differences in connectivity could be attributed to the proximity of many more estuaries to the Kowie Estuary compared to the Goukou Estuary. Estuarine movements by acoustically tagged leervis in both estuaries followed a strong diel but a much weaker tidal pattern. A number of environmental variables significantly influenced estuarine movements and marine excursions (including river inflow, photoperiod and moon phase). However, water temperature (river and sea) had the most significant effects on these movements, with decreasing winter river temperatures coincident with a downstream shift in mean daily position of fish tagged in the Kowie Estuary, and movement into the marine environment from the Goukou Estuary. Interestingly, the area use patterns of juvenile leervis tagged in the Kowie and Goukou estuaries were different, predominantly using limited portions of each estuary. Kowie fish spent more time in the mouth region and lower reaches, while Goukou fish spent more time in the lower and middle reaches of the estuary. Therefore, should no-take Estuarine Protected Areas be implemented, inter-estuary differences would need to be considered to determine the most effective stretches of estuary to close to provide maximum protection for leervis. This study provided new information on the movement behaviour of juvenile leervis, the degree to which juveniles depend on estuaries as nursery areas, and the cyclical rhythms and environmental factors influencing their movements. The study therefore contributes considerably to our understanding of the role of estuaries in the life history of leervis, and provides essential information for the improved management of this over-exploited species.
- Full Text:
- Date Issued: 2017
- Authors: Murray, Taryn Sara
- Date: 2017
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/4477 , vital:20676
- Description: Estuaries are highly productive ecosystems that provide an important nursery function to many marine-spawning fish species. While in estuaries, the juveniles of estuary-associated fishes are exposed to frequent, abrupt changes in environmental conditions and, as such, utilise movement as a strategy to cope with the changing conditions. Therefore, to gain a better understanding of the importance of estuaries (i.e. estuary-dependency) to estuary-associated species, knowledge on their movement patterns within estuaries, the links between habitats, and the environmental and cyclical processes driving these movements, is necessary. Lichia amia, commonly known as leervis or garrick in southern Africa, is an over-exploited, estuary-dependent fishery species targeted by coastal recreational and subsistence fishers, as well as spearfishers, throughout its South African distribution. Aspects of its biology and life history have been assessed; however, knowledge on its movement behaviour is limited to a single conventional dart tagging study, which described large-scale coastal movements of juvenile, sub-adult and adult leervis. As such, little is known about area use and movement patterns within estuaries, or the degree of connectivity between estuarine and marine habitats. Therefore, the aim of this study, using conventional dart tagging and passive acoustic telemetry methods, was to assess the role of estuarine nursery habitats in the life cycle of the leervis by examining area use patterns and movement behaviour within estuaries, investigating the degree of habitat connectivity, and determining the drivers (cyclical rhythms and environmental variables) of estuarine use and connectivity. A dedicated conventional mark-recapture study on juvenile leervis within the Swartkops Estuary revealed a high level of estuarine fidelity (philopatry) suggesting that estuaries are important nursery habitats. However, movement distances increased with increasing fish length, with some fish also being recaptured in the neighbouring marine environment. These results provided evidence of an ontogenetic habitat shift, with smaller fish remaining in the estuary for extended periods and larger individuals undertaking more extensive movements. Complementary passive acoustic telemetry studies were conducted in the Kowie and Goukou estuaries, spaced 620 km apart, to assess area use, movement patterns, residency and multiple habitat connectivity of juvenile leervis. These telemetry studies showed varying levels of residency within the tagging estuaries, and seasonal variation in area use. The lengths of estuary used by leervis tagged in the Kowie Estuary generally decreased with the onset of austral winter, while fish tagged in the Goukou Estuary generally moved into the marine environment. Despite tagged individuals spending on average 56% and 38% of the total monitoring periods within the Kowie and Goukou estuaries, respectively, fish displayed high levels of multiple habitat connectivity, with 71% and 76% of Kowie and Goukou fish, respectively, visiting adjacent marine and estuarine environments. A total of 11 different neighbouring habitats (estuaries and ports) were visited by Kowie fish, while fish tagged in the Goukou Estuary only visited four adjacent habitats. These differences in connectivity could be attributed to the proximity of many more estuaries to the Kowie Estuary compared to the Goukou Estuary. Estuarine movements by acoustically tagged leervis in both estuaries followed a strong diel but a much weaker tidal pattern. A number of environmental variables significantly influenced estuarine movements and marine excursions (including river inflow, photoperiod and moon phase). However, water temperature (river and sea) had the most significant effects on these movements, with decreasing winter river temperatures coincident with a downstream shift in mean daily position of fish tagged in the Kowie Estuary, and movement into the marine environment from the Goukou Estuary. Interestingly, the area use patterns of juvenile leervis tagged in the Kowie and Goukou estuaries were different, predominantly using limited portions of each estuary. Kowie fish spent more time in the mouth region and lower reaches, while Goukou fish spent more time in the lower and middle reaches of the estuary. Therefore, should no-take Estuarine Protected Areas be implemented, inter-estuary differences would need to be considered to determine the most effective stretches of estuary to close to provide maximum protection for leervis. This study provided new information on the movement behaviour of juvenile leervis, the degree to which juveniles depend on estuaries as nursery areas, and the cyclical rhythms and environmental factors influencing their movements. The study therefore contributes considerably to our understanding of the role of estuaries in the life history of leervis, and provides essential information for the improved management of this over-exploited species.
- Full Text:
- Date Issued: 2017
Comparative fish ecology in three periodically connected rivers in the upper Zambezi and Okavango ecoregions
- Authors: Taylor, Geraldine Claire
- Date: 2017
- Subjects: Fishes Ecology Zambia Zambezi District , Floodplain ecology Zambia Zambezi District , Stable isotopes , Fishes Food Zambia Zambezi District , Fishes Mortality Zambia Zambezi District , Fish populations Zambia Zambezi District , Fishes Growth
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/65055 , vital:28660 , DOI https://doi.org/10.21504/10962/65055
- Description: The Upper Zambezi, Kavango and Kwando rivers are three periodically interlinked floodplain rivers which share the same Upper Zambezian floodplain ichthyofauna. The aim of this thesis was to compare the biology and ecology of the fish communities in these three rivers. The objective was to test the hypothesis that fish community composition and assemblage structure, fish diets, food web structure and trophic dynamics, fish growth rates and total mortality are influenced by the differing flood magnitudes of the three rivers, in support of the flood pulse concept. To understand the abiotic characteristics of each river, water temperature, flood regime, total dissolved inorganic nitrogen concentrations and water quality parameters were measured and compared between rivers. Water temperatures varied seasonally, and seven day moving averages peaked above 30 °C in January, and fell to between 16 and 19 °C in June. The Zambezi River had the largest flood (6.14 m), followed by the Kavango River (3.80 m), while the Kwando River had the smallest flood (0.65 m). Total dissolved inorganic nitrogen concentrations were low in the Kavango and Zambezi Rivers (0.2 - 0.6 mg/l), and slightly higher in the Kwando River (<1 mg/l). Conductivity, total dissolved solids and total dissolved inorganic nitrogen concentrations decreased with the flood (dilution effect). Using biomass catch per unit effort data from experimental gillnets, fish community composition and assemblage structure was described, and differed between rivers in all hydrological seasons. In the Zambezi and Kavango rivers, fish assemblages varied with hydrological season as a result of the homogenising influence of the flood pulse, while in the Kwando River fish assemblages did not differ seasonally as flood pulses were small and often irregular. Differences in community composition were attributed to the abundance of Hydrocynus vittatus, a large bodied open water predator, in the Zambezi and Kavango rivers, and its relative absence in the Kwando River. Based on the results of the community composition, six focus species were chosen that were abundant and representative of the various feeding modes and life history strategies of the fish community. These were the striped robber Brycinus lateralis, sharptooth catfish Clarias gariepinus, blunttooth catfish Clarias ngamensis, African pike Hepsetus cuvieri, silver catfish Schilbe intermedius and purpleface largemouth Serranochromis macrocephalus. Stomach contents analysis was then used to compare the feeding ecology of the six example species between rivers. Clarias gariepinus, C. ngamensis and S. intermedius were piscivorous in the Zambezi and Kavango rivers, and preyed upon more invertebrates in the Kwando River, while Hepsetus cuvieri and S. macrocephalus were piscivorous in all three rivers. Differences in diets were attributed to seasonal prey abundance, with prey fishes abundant during falling and low water when the Zambezi and Kavango rivers were sampled, while invertebrates were abundant during rising and high water when the Kwando River was sampled. Prey mastication by B. lateralis made prey identification difficult. For other predators, the usefulness of stomach contents analysis for dietary descriptions was restricted by the high proportion of empty stomachs. As a result, whole ecosystem stable isotope analysis was used to gain a holistic understanding of the food web structure and fish feeding ecology of the three rivers. The Zambezi and Kavango river food webs were supported by C enriched resources such as C4 and C3 riparian vegetation from the floodplain, while the Kwando River food web was based on C depleted resources such as filamentous algae and aquatic macrophytes. The Zambezi River food web had a restricted nitrogen range, with reduced food chain length and the predators in this river did not occupy such elevated trophic positions compared to in the Kavango and Kwando river food webs. This was attributed to the overfishing of the primary and tertiary consumers in the Zambezi River, a phenomenon known to reduce food chain length. Focussing on predator communities, in the Zambezi and Kavango rivers, H. vittatus isotopic niche width was large and overlapped significantly with most other predators, while in the Kwando River predator niches were more distinct. This supported previously proposed hypotheses by describing H. vittatus as a dominant predator which excludes all other fishes by predation or competition. Despite the dominance of H. vittatus, C. gariepinus occupied the position of top predator in all three rivers, and information on the habitat use, feeding habits and trophic niches of the serranochromine cichlids added understanding of their ecology. Lastly, age was determined using sectioned sagittal otoliths for C. gariepinus, C. ngamensis, S. intermedius and S. macrocephalus and using whole asteriscus otoliths for B. lateralis and H. cuvieri, and growth was modelled using the von Bertalanffy growth equation. Growth performance was high in the Zambezi and Kavango rivers, and lower in the Kwando River, most likely in response to the varying flood magnitudes. Total mortality rates, estimated using Hoenig’s maximum-age based equation, were high in the Zambezi River as a result of the high fishing pressure on this river. Overall floodplain fish ecology in the Zambezi, Kavango and Kwando rivers was influenced by the flood pulse, as was predicted by the flood pulse concept. Periodic and equilibrium life history strategists were found to adapt either to the pulsing environments of the Zambezi and Kavango rivers, or to the more stable environment of the Kwando River, and large bodied, long lived periodic strategists such as C. gariepinus tended to be highly plastic and able to thrive in most conditions. Data also suggested that Zambezi River food web structure and fish mortality rates have been impacted by overfishing, for which more information is needed to conserve and manage this system. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2018
- Full Text:
- Date Issued: 2017
- Authors: Taylor, Geraldine Claire
- Date: 2017
- Subjects: Fishes Ecology Zambia Zambezi District , Floodplain ecology Zambia Zambezi District , Stable isotopes , Fishes Food Zambia Zambezi District , Fishes Mortality Zambia Zambezi District , Fish populations Zambia Zambezi District , Fishes Growth
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/65055 , vital:28660 , DOI https://doi.org/10.21504/10962/65055
- Description: The Upper Zambezi, Kavango and Kwando rivers are three periodically interlinked floodplain rivers which share the same Upper Zambezian floodplain ichthyofauna. The aim of this thesis was to compare the biology and ecology of the fish communities in these three rivers. The objective was to test the hypothesis that fish community composition and assemblage structure, fish diets, food web structure and trophic dynamics, fish growth rates and total mortality are influenced by the differing flood magnitudes of the three rivers, in support of the flood pulse concept. To understand the abiotic characteristics of each river, water temperature, flood regime, total dissolved inorganic nitrogen concentrations and water quality parameters were measured and compared between rivers. Water temperatures varied seasonally, and seven day moving averages peaked above 30 °C in January, and fell to between 16 and 19 °C in June. The Zambezi River had the largest flood (6.14 m), followed by the Kavango River (3.80 m), while the Kwando River had the smallest flood (0.65 m). Total dissolved inorganic nitrogen concentrations were low in the Kavango and Zambezi Rivers (0.2 - 0.6 mg/l), and slightly higher in the Kwando River (<1 mg/l). Conductivity, total dissolved solids and total dissolved inorganic nitrogen concentrations decreased with the flood (dilution effect). Using biomass catch per unit effort data from experimental gillnets, fish community composition and assemblage structure was described, and differed between rivers in all hydrological seasons. In the Zambezi and Kavango rivers, fish assemblages varied with hydrological season as a result of the homogenising influence of the flood pulse, while in the Kwando River fish assemblages did not differ seasonally as flood pulses were small and often irregular. Differences in community composition were attributed to the abundance of Hydrocynus vittatus, a large bodied open water predator, in the Zambezi and Kavango rivers, and its relative absence in the Kwando River. Based on the results of the community composition, six focus species were chosen that were abundant and representative of the various feeding modes and life history strategies of the fish community. These were the striped robber Brycinus lateralis, sharptooth catfish Clarias gariepinus, blunttooth catfish Clarias ngamensis, African pike Hepsetus cuvieri, silver catfish Schilbe intermedius and purpleface largemouth Serranochromis macrocephalus. Stomach contents analysis was then used to compare the feeding ecology of the six example species between rivers. Clarias gariepinus, C. ngamensis and S. intermedius were piscivorous in the Zambezi and Kavango rivers, and preyed upon more invertebrates in the Kwando River, while Hepsetus cuvieri and S. macrocephalus were piscivorous in all three rivers. Differences in diets were attributed to seasonal prey abundance, with prey fishes abundant during falling and low water when the Zambezi and Kavango rivers were sampled, while invertebrates were abundant during rising and high water when the Kwando River was sampled. Prey mastication by B. lateralis made prey identification difficult. For other predators, the usefulness of stomach contents analysis for dietary descriptions was restricted by the high proportion of empty stomachs. As a result, whole ecosystem stable isotope analysis was used to gain a holistic understanding of the food web structure and fish feeding ecology of the three rivers. The Zambezi and Kavango river food webs were supported by C enriched resources such as C4 and C3 riparian vegetation from the floodplain, while the Kwando River food web was based on C depleted resources such as filamentous algae and aquatic macrophytes. The Zambezi River food web had a restricted nitrogen range, with reduced food chain length and the predators in this river did not occupy such elevated trophic positions compared to in the Kavango and Kwando river food webs. This was attributed to the overfishing of the primary and tertiary consumers in the Zambezi River, a phenomenon known to reduce food chain length. Focussing on predator communities, in the Zambezi and Kavango rivers, H. vittatus isotopic niche width was large and overlapped significantly with most other predators, while in the Kwando River predator niches were more distinct. This supported previously proposed hypotheses by describing H. vittatus as a dominant predator which excludes all other fishes by predation or competition. Despite the dominance of H. vittatus, C. gariepinus occupied the position of top predator in all three rivers, and information on the habitat use, feeding habits and trophic niches of the serranochromine cichlids added understanding of their ecology. Lastly, age was determined using sectioned sagittal otoliths for C. gariepinus, C. ngamensis, S. intermedius and S. macrocephalus and using whole asteriscus otoliths for B. lateralis and H. cuvieri, and growth was modelled using the von Bertalanffy growth equation. Growth performance was high in the Zambezi and Kavango rivers, and lower in the Kwando River, most likely in response to the varying flood magnitudes. Total mortality rates, estimated using Hoenig’s maximum-age based equation, were high in the Zambezi River as a result of the high fishing pressure on this river. Overall floodplain fish ecology in the Zambezi, Kavango and Kwando rivers was influenced by the flood pulse, as was predicted by the flood pulse concept. Periodic and equilibrium life history strategists were found to adapt either to the pulsing environments of the Zambezi and Kavango rivers, or to the more stable environment of the Kwando River, and large bodied, long lived periodic strategists such as C. gariepinus tended to be highly plastic and able to thrive in most conditions. Data also suggested that Zambezi River food web structure and fish mortality rates have been impacted by overfishing, for which more information is needed to conserve and manage this system. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2018
- Full Text:
- Date Issued: 2017
The identification of key vulnerability components within Solomon Islands coastal communities
- Authors: Malherbe, Willem Stefanus
- Date: 2017
- Subjects: Solomon Islands -- Environmental conditions , Coastal ecology -- Solomon Islands , Island ecology -- Solomon Islands , Climatic changes -- Solomon Islands , Sociology, Urban -- Solomon Islands , Sociology, Rural -- Solomon Islands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:21184 , http://hdl.handle.net/10962/6827
- Description: The impacts of climate change are disproportionally felt across the planet, with small island developing states some of the countries most at risk. Furthermore, climate change may compound existing problems such as over harvested resources, leading to knock-on effects on national economies. Both direct and indirect stressors may impact communities differently based on their level of exposure to stressors, their intrinsic sensitivity to these stressors, and their ability to adapt to stressors. This study aims to answer the primary research question: Why are some communities more vulnerable than others? A vulnerability assessment is used to identify both vulnerable and non-vulnerable attributes of Solomon Islands’ communities. Surveys comprised a comprehensive questionnaire to draw inference on each vulnerability category; sensitivity, exposure and adaptive capacity, along with their various components and subcomponents. An analysis of household and community livelihood strategies was conducted to compliment vulnerability scores and provide a deeper understanding of livelihood practises. As is expected of small island states, exposure presents the biggest threat to coastal communities. Within this category, environmental changes and personal exposure from shoreline erosion and safety at sea provide evidence of high vulnerability. Within the sensitivity category, the cultural importance of fishing, as well as attachment to place and fishing, renders communities more vulnerable. Simultaneously, local ecological knowledge and economic dependence on resources other than fishing proved to be resilient attributes by decreasing vulnerability. Low vulnerability scores for the adaptive capacity category were achieved by communities where physical capital, such as community infrastructure, was evident. A lack of both institutional support and bridging of social capital were attributes which contributed to community vulnerability. This study has identified key attributes that have both positive and negative effects on the vulnerability of Solomon Islands communities. Having done this, I have also attempted to determine the drivers that render some attributes more vulnerable than others. It is acknowledged that the drivers of all key attributes of vulnerability is required to determine areas where adaptation plans will be most effective. Importantly, drivers of high vulnerability should not be considered as the primary focus of adaptation planning, but also the drivers of low vulnerability, such as community cohesion, which provide resilience within communities.
- Full Text:
- Date Issued: 2017
- Authors: Malherbe, Willem Stefanus
- Date: 2017
- Subjects: Solomon Islands -- Environmental conditions , Coastal ecology -- Solomon Islands , Island ecology -- Solomon Islands , Climatic changes -- Solomon Islands , Sociology, Urban -- Solomon Islands , Sociology, Rural -- Solomon Islands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:21184 , http://hdl.handle.net/10962/6827
- Description: The impacts of climate change are disproportionally felt across the planet, with small island developing states some of the countries most at risk. Furthermore, climate change may compound existing problems such as over harvested resources, leading to knock-on effects on national economies. Both direct and indirect stressors may impact communities differently based on their level of exposure to stressors, their intrinsic sensitivity to these stressors, and their ability to adapt to stressors. This study aims to answer the primary research question: Why are some communities more vulnerable than others? A vulnerability assessment is used to identify both vulnerable and non-vulnerable attributes of Solomon Islands’ communities. Surveys comprised a comprehensive questionnaire to draw inference on each vulnerability category; sensitivity, exposure and adaptive capacity, along with their various components and subcomponents. An analysis of household and community livelihood strategies was conducted to compliment vulnerability scores and provide a deeper understanding of livelihood practises. As is expected of small island states, exposure presents the biggest threat to coastal communities. Within this category, environmental changes and personal exposure from shoreline erosion and safety at sea provide evidence of high vulnerability. Within the sensitivity category, the cultural importance of fishing, as well as attachment to place and fishing, renders communities more vulnerable. Simultaneously, local ecological knowledge and economic dependence on resources other than fishing proved to be resilient attributes by decreasing vulnerability. Low vulnerability scores for the adaptive capacity category were achieved by communities where physical capital, such as community infrastructure, was evident. A lack of both institutional support and bridging of social capital were attributes which contributed to community vulnerability. This study has identified key attributes that have both positive and negative effects on the vulnerability of Solomon Islands communities. Having done this, I have also attempted to determine the drivers that render some attributes more vulnerable than others. It is acknowledged that the drivers of all key attributes of vulnerability is required to determine areas where adaptation plans will be most effective. Importantly, drivers of high vulnerability should not be considered as the primary focus of adaptation planning, but also the drivers of low vulnerability, such as community cohesion, which provide resilience within communities.
- Full Text:
- Date Issued: 2017
Progress in implementing the ecosystem approach to fisheries in South Africa in principle and in practice
- Duna, Elethu Zamandlane Lona
- Authors: Duna, Elethu Zamandlane Lona
- Date: 2017
- Subjects: Fisheries -- Environmental aspects -- South Africa , Sustainable fisheries -- South Africa , Fishery management -- South Africa , South African Sustainable Seafood Initiative
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/44879 , vital:25449
- Description: Over the last century, the population of the world has more than doubled, resulting in an increase in seafood consumption (FAO 2010), and placing strain on fisheries wild stocks, their habitats, and the coastal communities that rely on them for food and survival. The ecosystem approach to fisheries (EAF) differs from other management approaches by combining all aspects of ecosystem management, and strives to conserve ecosystem structure, maintain diversity, productivity, and integrity, and to meet human food and economic needs. This study aims to assess how South Africa is progressing in implementing EAF in principle and in practice, to identify challenges, and suggest solutions, where appropriate. The law sets precedence on governance. An assessment of the Marine Living Resources Act, (MLRA) and the South African Policy for Small-scale Fisheries (SSFP) revealed that, although these instruments recognise and contain elements of EAF, this management approach has not been adequately implemented. In practice, the status of implementation of EAF was assessed through the Southern African Sustainable Seafood Initiative (SASSI) and the Ecological Risk Assessments (ERA). The scores of 65 assessments, conducted in 2013 and 2014, were obtained from SASSI. Of the 65 species assessed; 18.4% were listed as Green, 50.8% were listed as Orange and 30.8% were listed as Red. Two methods were used to analyse the data; non-metric multidimensional scaling (NMDS), and cluster analysis in the statistical program R. Analysis of the SASSI assessments indicates that there has been progress in implementing EAF since the World Summit on Sustainable Development in 2002. The high number of Orange and Red listed species however, indicate that major sustainability issues still exist. Species in commercially important fisheries enjoy the bulk of research and management attention compared to other species, including bycatch species, as reflected by a high proportion of Green-rated commercially important species. Based on these results, four fisheries were chosen for further indepth analysis using additional information found in ecological risk assessments: offshore demersal trawl, inshore demersal trawl, West Coast rock lobster fishery and the line fishery. The documents and published literature of the Department of Agriculture, Forestry and Fisheries Internal Scientific Working Groups provided further information. A Wilcoxon signed rank test conducted in the programme R on the results of the ERAs showed that there was a decline in implementation of EAF and reinforced the earlier conclusion that large commercial fisheries, offshore and inshore demersal trawl, were progressing in implementing EAF faster than West Coast rock lobster and line fisheries, which are examples of smaller-scale fisheries that are more accessible to many resource users. Both progress and challenges appeared to be largely influenced by several common factors, which include the presence or absence of positive incentives, co-management, management plans, access, compliance, economic importance, capacity, and the interests of rights holders and other stakeholders.
- Full Text:
- Date Issued: 2017
- Authors: Duna, Elethu Zamandlane Lona
- Date: 2017
- Subjects: Fisheries -- Environmental aspects -- South Africa , Sustainable fisheries -- South Africa , Fishery management -- South Africa , South African Sustainable Seafood Initiative
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/44879 , vital:25449
- Description: Over the last century, the population of the world has more than doubled, resulting in an increase in seafood consumption (FAO 2010), and placing strain on fisheries wild stocks, their habitats, and the coastal communities that rely on them for food and survival. The ecosystem approach to fisheries (EAF) differs from other management approaches by combining all aspects of ecosystem management, and strives to conserve ecosystem structure, maintain diversity, productivity, and integrity, and to meet human food and economic needs. This study aims to assess how South Africa is progressing in implementing EAF in principle and in practice, to identify challenges, and suggest solutions, where appropriate. The law sets precedence on governance. An assessment of the Marine Living Resources Act, (MLRA) and the South African Policy for Small-scale Fisheries (SSFP) revealed that, although these instruments recognise and contain elements of EAF, this management approach has not been adequately implemented. In practice, the status of implementation of EAF was assessed through the Southern African Sustainable Seafood Initiative (SASSI) and the Ecological Risk Assessments (ERA). The scores of 65 assessments, conducted in 2013 and 2014, were obtained from SASSI. Of the 65 species assessed; 18.4% were listed as Green, 50.8% were listed as Orange and 30.8% were listed as Red. Two methods were used to analyse the data; non-metric multidimensional scaling (NMDS), and cluster analysis in the statistical program R. Analysis of the SASSI assessments indicates that there has been progress in implementing EAF since the World Summit on Sustainable Development in 2002. The high number of Orange and Red listed species however, indicate that major sustainability issues still exist. Species in commercially important fisheries enjoy the bulk of research and management attention compared to other species, including bycatch species, as reflected by a high proportion of Green-rated commercially important species. Based on these results, four fisheries were chosen for further indepth analysis using additional information found in ecological risk assessments: offshore demersal trawl, inshore demersal trawl, West Coast rock lobster fishery and the line fishery. The documents and published literature of the Department of Agriculture, Forestry and Fisheries Internal Scientific Working Groups provided further information. A Wilcoxon signed rank test conducted in the programme R on the results of the ERAs showed that there was a decline in implementation of EAF and reinforced the earlier conclusion that large commercial fisheries, offshore and inshore demersal trawl, were progressing in implementing EAF faster than West Coast rock lobster and line fisheries, which are examples of smaller-scale fisheries that are more accessible to many resource users. Both progress and challenges appeared to be largely influenced by several common factors, which include the presence or absence of positive incentives, co-management, management plans, access, compliance, economic importance, capacity, and the interests of rights holders and other stakeholders.
- Full Text:
- Date Issued: 2017
The effect of carbohydrate on dusky kob, Argyrosomus japonicus, fed pelleted diets
- Authors: Mabasa, Nyiko Charity
- Date: 2017
- Subjects: Carbohydrates in animal nutrition , Fishes -- Feeding and feeds , Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Nutrition , Argyrosomus -- Nutrition , Argyrosomus japonicus -- Feeding and feeds , Argyrosomus -- Feeding and feeds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/44895 , vital:25450
- Description: The dusky kob, Argyrosomus japonicus, is an emerging commercial marine aquaculture species in South Africa. Attributes such as market acceptance, fast growth rates, tolerance to sibling density, acceptance of pelleted feed and adaptability to intensive aquaculture conditions make it a good candidate. Feed, the largest running cost in most aquaculture operations, is a limiting factor in dusky kob production as its nutritional requirements are not well understood. The present project formed part of a research program to develop a locally produced, least cost and sustainable feed that will support the growth and health of dusky kob. The approximate protein and energy requirements for kob fed formulated feeds have been established in earlier research, but the ability of kob to utilize carbohydrates as an energy source has not previously been investigated. The aim of this study was to determine the efficiency of dusky kob to utilize graded levels of carbohydrate (pregelatinized maize starch - PGMS) in pelleted diets. The research objectives were to determine the effect of dietary carbohydrate levels on:i) growth and feed utilization; ii) post prandial blood glucose levels; and iii) general fish health, gut bacterial composition and liver glycogen content of juvenile dusky kob. Hatchery reared juvenile dusky kob (5 g) were acclimatized in a recirculating experimental aquaculture system at the Department of Ichthyology and Fisheries Science at Rhodes University. They were fed trout crumble starter feed for three weeks before the start of the feeding experiment. Five diets containing 4.1, 8.2, 16.4 and 24.6% carbohydrate, hereafter referred to as 4.1C, 8.2C, 16.4C and 24.6C respectively, were formulated with pregelatinized maize starch as a carbohydrate source and fishmeal as the main protein source. Fish were fed these diets twice daily at 3.85% body weight per day for three months. Specific growth rates and feed conversion rations differed significantly between the four dietary treatments. Growth rate increased with increasing carbohydrate up to 16.4%, after which a significant decline was observed. Diet 16.4C produced the highest specific growth rate (SGR) of 1.84 ± 0.05% body weight/day, and the lowest feed conversion ratio of 1.28 ± 0.08. While the lowest specific growth rate and highest feed conversion ratio of 0.79 ± 0.05 and 2.14 ± 0.13 respectively, were found for diet 24.6C. A third order polynomial regression, using SGR, determined the optimum carbohydrate inclusion for dusky kob to be 16.72%. The general structure of the liver was similar between all fish fed the dietary treatments and all fish liver samples displayed a certain degree of lipid vacuolization of the hepatocytes. Evidence of starvation was observed in the livers of fish fed diet 24.6C. However, no differences in the amount of liver glycogen were observed. Gut bacterial composition did not differ among the different diets or between the different sections of the gut. Differences were however observed in the diversity of the bacterial community structure at the start (when they were fed commercial trout feed) and end of the experimental period (after being fed a fishmeal-maize diet). The rate at which glucose was cleared from the blood differed significantly between diets. The low carbohydrate diets (i.e. diet 4.1C and 8.2C) showed a steady rate of glucose removal from the blood over a 48 h experimental period. Sharp increases in blood glucose concentration were observed in diet 16.4C and diet 24.6C, with highest glucose concentrations of 7.18 ± 1.81 and 8.05 ± 2.35 mmol/l respectively, observed 24 h after feeding. The blood glucose concentration of the fish fed diet 16.4C however returned to resting glucose concentration after 48 h, while that of the fish fed diet 24.6C did not. The results demonstrated that the level of dietary carbohydrate inclusion has a significant effect on the growth and health of the fish. The optimum carbohydrate inclusion in dusky kob diets is indicated to be 16.7%, which gave the best growth rate and maximum protein sparing effect without adverse effects on fish health. These findings are important for diet formulation and producing ‘least-cost’ diets for dusky kob farming.
- Full Text:
- Date Issued: 2017
- Authors: Mabasa, Nyiko Charity
- Date: 2017
- Subjects: Carbohydrates in animal nutrition , Fishes -- Feeding and feeds , Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Nutrition , Argyrosomus -- Nutrition , Argyrosomus japonicus -- Feeding and feeds , Argyrosomus -- Feeding and feeds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/44895 , vital:25450
- Description: The dusky kob, Argyrosomus japonicus, is an emerging commercial marine aquaculture species in South Africa. Attributes such as market acceptance, fast growth rates, tolerance to sibling density, acceptance of pelleted feed and adaptability to intensive aquaculture conditions make it a good candidate. Feed, the largest running cost in most aquaculture operations, is a limiting factor in dusky kob production as its nutritional requirements are not well understood. The present project formed part of a research program to develop a locally produced, least cost and sustainable feed that will support the growth and health of dusky kob. The approximate protein and energy requirements for kob fed formulated feeds have been established in earlier research, but the ability of kob to utilize carbohydrates as an energy source has not previously been investigated. The aim of this study was to determine the efficiency of dusky kob to utilize graded levels of carbohydrate (pregelatinized maize starch - PGMS) in pelleted diets. The research objectives were to determine the effect of dietary carbohydrate levels on:i) growth and feed utilization; ii) post prandial blood glucose levels; and iii) general fish health, gut bacterial composition and liver glycogen content of juvenile dusky kob. Hatchery reared juvenile dusky kob (5 g) were acclimatized in a recirculating experimental aquaculture system at the Department of Ichthyology and Fisheries Science at Rhodes University. They were fed trout crumble starter feed for three weeks before the start of the feeding experiment. Five diets containing 4.1, 8.2, 16.4 and 24.6% carbohydrate, hereafter referred to as 4.1C, 8.2C, 16.4C and 24.6C respectively, were formulated with pregelatinized maize starch as a carbohydrate source and fishmeal as the main protein source. Fish were fed these diets twice daily at 3.85% body weight per day for three months. Specific growth rates and feed conversion rations differed significantly between the four dietary treatments. Growth rate increased with increasing carbohydrate up to 16.4%, after which a significant decline was observed. Diet 16.4C produced the highest specific growth rate (SGR) of 1.84 ± 0.05% body weight/day, and the lowest feed conversion ratio of 1.28 ± 0.08. While the lowest specific growth rate and highest feed conversion ratio of 0.79 ± 0.05 and 2.14 ± 0.13 respectively, were found for diet 24.6C. A third order polynomial regression, using SGR, determined the optimum carbohydrate inclusion for dusky kob to be 16.72%. The general structure of the liver was similar between all fish fed the dietary treatments and all fish liver samples displayed a certain degree of lipid vacuolization of the hepatocytes. Evidence of starvation was observed in the livers of fish fed diet 24.6C. However, no differences in the amount of liver glycogen were observed. Gut bacterial composition did not differ among the different diets or between the different sections of the gut. Differences were however observed in the diversity of the bacterial community structure at the start (when they were fed commercial trout feed) and end of the experimental period (after being fed a fishmeal-maize diet). The rate at which glucose was cleared from the blood differed significantly between diets. The low carbohydrate diets (i.e. diet 4.1C and 8.2C) showed a steady rate of glucose removal from the blood over a 48 h experimental period. Sharp increases in blood glucose concentration were observed in diet 16.4C and diet 24.6C, with highest glucose concentrations of 7.18 ± 1.81 and 8.05 ± 2.35 mmol/l respectively, observed 24 h after feeding. The blood glucose concentration of the fish fed diet 16.4C however returned to resting glucose concentration after 48 h, while that of the fish fed diet 24.6C did not. The results demonstrated that the level of dietary carbohydrate inclusion has a significant effect on the growth and health of the fish. The optimum carbohydrate inclusion in dusky kob diets is indicated to be 16.7%, which gave the best growth rate and maximum protein sparing effect without adverse effects on fish health. These findings are important for diet formulation and producing ‘least-cost’ diets for dusky kob farming.
- Full Text:
- Date Issued: 2017
The role of protected areas in the conservation and management of fisheries in the Chobe District of Botswana
- Authors: Bakane, Modiegi
- Date: 2017
- Subjects: Cichlids Botswana Chobe District , Protected areas Botswana Chobe District , Fishery management Botswana Chobe District
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7459 , vital:21262
- Description: This study was aimed at better understanding the function of protected areas as a management strategy for the Chobe District fishery in Botswana, by first investigating the relative abundance in fish communities in and outside protected areas and secondly, by performing an assessment of the biology of commercially important large cichlid species viz threespot tilapia Oreochromis andersonii, greenhead tilapia Oreochromis macrochir and redbreast tilapia Coptodon rendalli. In this study, data and specimens were collected during seasonal surveys between September 2014 and April 2015, using the standard graded fleets of gillnets employed in other programmes in the region, together with D-nets, angling and electro-fishing. The study demonstrated that fish communities in the floodplain ecosystems in the Chobe District of Botswana were representative of the region, containing some 70 species in 14 families. This study also demonstrated that for all the species collected, the mean Catch Per Unit Effort (CPUE) by weight for all the species was significantly higher in protected areas (Kruskal Wallis Test; P<0.05) namely, Zibadianja Lagoon (38 ± 31 kg/net.night"1 and Savuti River/marsh 25 ± 19 kg/net.night"1) than in the fished Chobe River floodplains CPUE (6 ± 3 kg/net.night-1). Biological contributions were estimates of longevity, growth and maturity for O. andersonii, O. macrochir and C. rendalli. Age and growth were estimated using sectioned sagittal otoliths. The Von Bertalanffy growth equation from otolith derived length at age was Lt(mm) =298 (1-e-0 59(t=- 098)) for O. andersonii and Lt(mm) = 337 (1-e-0'20(t=-235)) for C. rendalli. The results indicated that protected areas enhanced fish longevity, and fish in protected areas were larger and older than those in exploited areas. Maturity estimates for the large cichlids were consistent with other research in the region and the length-at-50% maturity was estimated as 250mm Lt for O. andersonii, 225 mm Lt for O. macrochir and 210 mm Lt for C. rendalli. Management recommendations are therefore to retain gill net mesh size regulations that ensure that these fish reach maturity and can breed before being harvested and to assess the possibility of increasing the number of protected areas in the district.
- Full Text:
- Date Issued: 2017
- Authors: Bakane, Modiegi
- Date: 2017
- Subjects: Cichlids Botswana Chobe District , Protected areas Botswana Chobe District , Fishery management Botswana Chobe District
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7459 , vital:21262
- Description: This study was aimed at better understanding the function of protected areas as a management strategy for the Chobe District fishery in Botswana, by first investigating the relative abundance in fish communities in and outside protected areas and secondly, by performing an assessment of the biology of commercially important large cichlid species viz threespot tilapia Oreochromis andersonii, greenhead tilapia Oreochromis macrochir and redbreast tilapia Coptodon rendalli. In this study, data and specimens were collected during seasonal surveys between September 2014 and April 2015, using the standard graded fleets of gillnets employed in other programmes in the region, together with D-nets, angling and electro-fishing. The study demonstrated that fish communities in the floodplain ecosystems in the Chobe District of Botswana were representative of the region, containing some 70 species in 14 families. This study also demonstrated that for all the species collected, the mean Catch Per Unit Effort (CPUE) by weight for all the species was significantly higher in protected areas (Kruskal Wallis Test; P<0.05) namely, Zibadianja Lagoon (38 ± 31 kg/net.night"1 and Savuti River/marsh 25 ± 19 kg/net.night"1) than in the fished Chobe River floodplains CPUE (6 ± 3 kg/net.night-1). Biological contributions were estimates of longevity, growth and maturity for O. andersonii, O. macrochir and C. rendalli. Age and growth were estimated using sectioned sagittal otoliths. The Von Bertalanffy growth equation from otolith derived length at age was Lt(mm) =298 (1-e-0 59(t=- 098)) for O. andersonii and Lt(mm) = 337 (1-e-0'20(t=-235)) for C. rendalli. The results indicated that protected areas enhanced fish longevity, and fish in protected areas were larger and older than those in exploited areas. Maturity estimates for the large cichlids were consistent with other research in the region and the length-at-50% maturity was estimated as 250mm Lt for O. andersonii, 225 mm Lt for O. macrochir and 210 mm Lt for C. rendalli. Management recommendations are therefore to retain gill net mesh size regulations that ensure that these fish reach maturity and can breed before being harvested and to assess the possibility of increasing the number of protected areas in the district.
- Full Text:
- Date Issued: 2017
The influence of environmental variability on the catch of chokka, Loligo reynaudii, off the coast of South Africa
- Authors: Joyner, Jessica Mary
- Date: 2017
- Subjects: Loligo reynaudii , Loligo fisheries -- South Africa , Squid fisheries -- South Africa , Loligo fisheries -- Environmental aspects -- South Africa , Squid fisheries -- Environmental aspects - South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/32130 , vital:24013
- Description: Globally, cephalopod fisheries are being relied on more heavily due to the depletion of longer-lived teleost species. The South African chokka squid (Loligo reynaudii) fishery is a case in point. Although previously numerous squid were often caught as bycatch, the fishery has officially been in place since 1985. Since the inception of the chokka fishery in South Africa, several studies have investigated the relationship between environmental drivers and annual chokka squid catch, with varying degrees of success. Recently, in 2013, chokka squid catches hit a record low, prompting resurgence in the topic of the squid environment-catch relationship. This study was initiated in an attempt to provide a quantitative relationship between the chokka squid catch and environmental variability, and to build a predictive model that could be used in fisheries management strategies. Historical data were obtained from various sources and included the mean and standard deviation in ocean bottom temperature; the mean and standard deviation in sea surface temperature; the maximum and minimum as well as the variation in wind speed; the mean, predominant and standard deviation in wind direction; the mean and standard deviation in atmospheric pressure; the mean chlorophyll concentration; the number of upwelling events; the hours of easterly winds blowing per day; and two large variation-in-climate indices, namely, the oceanic Nino index and the Antarctic Oscillation index. The monthly catch data were also provided. These data were initially analysed for inter-annual and intra-annual cyclic trends and followed by analysis of the delay in response of catch to the environmental variables, anticipating some impact on the different stages of the chokka life cycle. These lagged data were incorporated into a negative binomial generalised linear model, as well as a generalised additive model, which revealed a strong relationship (r²=0.707) between the catch and environmental variability. The inclusion of all the parameters was necessary; however, the mean bottom temperature and the standard deviation in sea surface temperature were the only parameters that had a significant effect on the catch. These results were used to build a predictive model that indicated that, although the relationship was strong, the ability of the model to predict catch was weak, particularly from the year 2005 onwards.
- Full Text:
- Date Issued: 2017
- Authors: Joyner, Jessica Mary
- Date: 2017
- Subjects: Loligo reynaudii , Loligo fisheries -- South Africa , Squid fisheries -- South Africa , Loligo fisheries -- Environmental aspects -- South Africa , Squid fisheries -- Environmental aspects - South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/32130 , vital:24013
- Description: Globally, cephalopod fisheries are being relied on more heavily due to the depletion of longer-lived teleost species. The South African chokka squid (Loligo reynaudii) fishery is a case in point. Although previously numerous squid were often caught as bycatch, the fishery has officially been in place since 1985. Since the inception of the chokka fishery in South Africa, several studies have investigated the relationship between environmental drivers and annual chokka squid catch, with varying degrees of success. Recently, in 2013, chokka squid catches hit a record low, prompting resurgence in the topic of the squid environment-catch relationship. This study was initiated in an attempt to provide a quantitative relationship between the chokka squid catch and environmental variability, and to build a predictive model that could be used in fisheries management strategies. Historical data were obtained from various sources and included the mean and standard deviation in ocean bottom temperature; the mean and standard deviation in sea surface temperature; the maximum and minimum as well as the variation in wind speed; the mean, predominant and standard deviation in wind direction; the mean and standard deviation in atmospheric pressure; the mean chlorophyll concentration; the number of upwelling events; the hours of easterly winds blowing per day; and two large variation-in-climate indices, namely, the oceanic Nino index and the Antarctic Oscillation index. The monthly catch data were also provided. These data were initially analysed for inter-annual and intra-annual cyclic trends and followed by analysis of the delay in response of catch to the environmental variables, anticipating some impact on the different stages of the chokka life cycle. These lagged data were incorporated into a negative binomial generalised linear model, as well as a generalised additive model, which revealed a strong relationship (r²=0.707) between the catch and environmental variability. The inclusion of all the parameters was necessary; however, the mean bottom temperature and the standard deviation in sea surface temperature were the only parameters that had a significant effect on the catch. These results were used to build a predictive model that indicated that, although the relationship was strong, the ability of the model to predict catch was weak, particularly from the year 2005 onwards.
- Full Text:
- Date Issued: 2017
Invasion status and potential impacts of bluegill Lepomis macrochirus Rafinesque, 1819 in the Kariega River, Eastern Cape, South Africa
- Authors: Ndaleni, Phumza Malibongwe
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7586 , vital:21276
- Description: The impact of alien invasive species is one of the greatest threats to biodiversity globally. All of the major drainages of South Africa are invaded by non-native fishes, yet little information is available on their impact. This thesis focusses on providing a better understanding of the potential impacts of bluegill Lepomis macrochirus Rafinesque, 1819, a species introduced into South Africa from the USA in 1938. The study assesses the distribution, establishment success and feeding ecology of L. macrochirus in an invaded South African River system in order to better understand and document its potential impacts. Specifically; this thesis (1) assesses the distribution and relative abundance of L. macrochirus in the Kariega System of the Eastern Cape, (2) determines the diet of the species in one of the major impoundments of the system, and (3) uses an experimental comparative functional response approach to assess whether this species has heightened predatory capabilities when compared with fishes with which it cooccurs. Ninety-six sites in the Kariega River system were sampled from the headwaters down to the estuary. Small native fish species (Enteromius anoplus and Enteromius pallidus) occurred mostly in the upper reaches, while in the middle and lower reaches, the centrarchid alien largemouth bass Micropterus salmoides and bluegill L. mocrochirus dominated. There was overlap between the centrarchids and introduced banded tilapia Tilapia sparrmanii and southern mouthbrooder Pseudocrenilabrus philander, but never with small-bodied native species. The stomach contents of L. macrochirus were examined during winter and summer and prey were identified to family level. Crustaceans and insects were an important component in their diet, but in summer fish eggs were common. Comparisons of bluegill diet with published literature indicated that there was potential for competition with largemouth bass, banded tilapia and southern mouthbrooder. Feeding experiments were conducted to compare the functional responses of these four species using a common prey item. Banded tilapia had significantly lower attack rates than the other species with no significant difference observed in other species. Bluegill has a similar impact to that of banded tilapia and southern mouthbrooder, but lower than that of largemouth bass. Results of the present study highlight that L. macrochirus introduced into dams will likely result in both upstream and downstream invasion of river systems. It is likely that this species does not, however, have as much of a predatory impact as M. salmoides in that its predatory capacity is relatively reduced and more comparable to South African native cichlids. These results are discussed within the context of invasion success/failure in other regions of southern Africa.
- Full Text:
- Date Issued: 2017
- Authors: Ndaleni, Phumza Malibongwe
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7586 , vital:21276
- Description: The impact of alien invasive species is one of the greatest threats to biodiversity globally. All of the major drainages of South Africa are invaded by non-native fishes, yet little information is available on their impact. This thesis focusses on providing a better understanding of the potential impacts of bluegill Lepomis macrochirus Rafinesque, 1819, a species introduced into South Africa from the USA in 1938. The study assesses the distribution, establishment success and feeding ecology of L. macrochirus in an invaded South African River system in order to better understand and document its potential impacts. Specifically; this thesis (1) assesses the distribution and relative abundance of L. macrochirus in the Kariega System of the Eastern Cape, (2) determines the diet of the species in one of the major impoundments of the system, and (3) uses an experimental comparative functional response approach to assess whether this species has heightened predatory capabilities when compared with fishes with which it cooccurs. Ninety-six sites in the Kariega River system were sampled from the headwaters down to the estuary. Small native fish species (Enteromius anoplus and Enteromius pallidus) occurred mostly in the upper reaches, while in the middle and lower reaches, the centrarchid alien largemouth bass Micropterus salmoides and bluegill L. mocrochirus dominated. There was overlap between the centrarchids and introduced banded tilapia Tilapia sparrmanii and southern mouthbrooder Pseudocrenilabrus philander, but never with small-bodied native species. The stomach contents of L. macrochirus were examined during winter and summer and prey were identified to family level. Crustaceans and insects were an important component in their diet, but in summer fish eggs were common. Comparisons of bluegill diet with published literature indicated that there was potential for competition with largemouth bass, banded tilapia and southern mouthbrooder. Feeding experiments were conducted to compare the functional responses of these four species using a common prey item. Banded tilapia had significantly lower attack rates than the other species with no significant difference observed in other species. Bluegill has a similar impact to that of banded tilapia and southern mouthbrooder, but lower than that of largemouth bass. Results of the present study highlight that L. macrochirus introduced into dams will likely result in both upstream and downstream invasion of river systems. It is likely that this species does not, however, have as much of a predatory impact as M. salmoides in that its predatory capacity is relatively reduced and more comparable to South African native cichlids. These results are discussed within the context of invasion success/failure in other regions of southern Africa.
- Full Text:
- Date Issued: 2017
Towards standardised reef fish monitoring: an assessment of stereo-video techniques to sample shallow and deep reef fish assemblages
- Authors: Halse, Sarah Jane
- Date: 2017
- Subjects: Reef fishes -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Ecology -- South Africa -- Agulhas, Cape (Cape) , Marine biodiversity -- South Africa -- Agulhas, Cape (Cape) , Biotic communities -- South Africa -- Agulhas, Cape (Cape) , Sparidae -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Size -- South Africa -- Agulhas, Cape (Cape) , Underwater videography in wildlife monitoring -- South Africa -- Tsitsikamma , Baited remote underwater stereo-video systems (stereo-BRUVs)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4635 , vital:20702
- Description: Baited remote underwater stereo-video systems (stereo-BRUVs) were developed to determine fish abundance and size structure in a more unbiased, and relatively non-invasive manner across a broader range of depths and habitats than conventional sampling methods achieve. These characteristics make stereo-BRUVs particularly useful for research inside marine protected areas (MPAs) where researchers are required to minimize disturbance to the protected environment. Although stereo-BRUVs have been widely used around the world, they are novel to South Africa and standardised protocols for their application are required. As such, this study aimed to address i) the effect of different bait types, namely pilchard (Sardinops sagax), squid (Loligo reynaudi) and bivalves (Crassostrea gigas and Perna perna) on the observed reef fish assemblage structure and ii) the effect of artificial illumination (lighting) on the observed reef fish assemblage structure sampled with stereo-BRUVs. One key component of the stereo-BRUVs methodology is the application of bait to attract fish into the field of view. Globally, pilchard is the most often used bait type for stereo- BRUVs, however, its suitability has never been tested comparatively against other bait types for South African conditions. Significant differences in fish abundance and assemblage structure were recorded between stereo-BRUVs deployments when applying the different bait types. The bivalve baits, oyster and mussel, were typically poor when sampling the reef fish assemblages of the region. Pilchard and squid were sampled in similar communities and were able to attract the majority of the reef fish from the region, suggesting they are suitable bait types for stereo-BRUVs in the Agulhas ecoregion. However, a power analysis indicated that roughly twice the amount of samples are required to effectively sample the same abundances of Chrysoblephus laticeps (roman) and Cheilodactylidae (fingerfins) species when sampling with squid as opposed to pilchard. Both bait types can be locally sourced, however, squid is considerably more expensive than pilchard. Considering the difference in cost, together with the fact that twice as much squid bait is required, squid is not a cost-effective option relative to pilchard. As such this study recommends that pilchard is the most appropriate bait for the Agulhas ecoregion of South Africa. Due to low light levels, artificial lighting is required when conducting remote video research in the sub-photic zone. Blue light has a shorter wavelength than other colour lights and attenuates slower through water. In addition, blue lighting has no recorded effect on fish behaviour and has proven to be a successful light colour for underwater sampling. The use of lighting is unavoidable for sub-photic stereo-BRUVs sampling and is recommended for all stereo-BRUVs sampling for comparability of data from environments characterised by different light levels. A study was conducted to test the necessity of artificial lighting when sampling from environments characterised by ambient light levels adequate for stereo- BRUVs sampling, a comparative to measure the effect of light on the fish assemblage structure. Of the more commonly detected fish species (those observed in >50% of the samples), most were seen at similar abundances in samples using lighting and in those without lighting. No significant differences were observed in fish length data between samples collected with and samples collected without lighting. This suggests that standardised stereo-BRUVs sampling across photic zones on the continental shelf of South Africa can be collected without blue lighting when ambient light levels are sufficient to see the survey area.
- Full Text:
- Date Issued: 2017
- Authors: Halse, Sarah Jane
- Date: 2017
- Subjects: Reef fishes -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Ecology -- South Africa -- Agulhas, Cape (Cape) , Marine biodiversity -- South Africa -- Agulhas, Cape (Cape) , Biotic communities -- South Africa -- Agulhas, Cape (Cape) , Sparidae -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Size -- South Africa -- Agulhas, Cape (Cape) , Underwater videography in wildlife monitoring -- South Africa -- Tsitsikamma , Baited remote underwater stereo-video systems (stereo-BRUVs)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4635 , vital:20702
- Description: Baited remote underwater stereo-video systems (stereo-BRUVs) were developed to determine fish abundance and size structure in a more unbiased, and relatively non-invasive manner across a broader range of depths and habitats than conventional sampling methods achieve. These characteristics make stereo-BRUVs particularly useful for research inside marine protected areas (MPAs) where researchers are required to minimize disturbance to the protected environment. Although stereo-BRUVs have been widely used around the world, they are novel to South Africa and standardised protocols for their application are required. As such, this study aimed to address i) the effect of different bait types, namely pilchard (Sardinops sagax), squid (Loligo reynaudi) and bivalves (Crassostrea gigas and Perna perna) on the observed reef fish assemblage structure and ii) the effect of artificial illumination (lighting) on the observed reef fish assemblage structure sampled with stereo-BRUVs. One key component of the stereo-BRUVs methodology is the application of bait to attract fish into the field of view. Globally, pilchard is the most often used bait type for stereo- BRUVs, however, its suitability has never been tested comparatively against other bait types for South African conditions. Significant differences in fish abundance and assemblage structure were recorded between stereo-BRUVs deployments when applying the different bait types. The bivalve baits, oyster and mussel, were typically poor when sampling the reef fish assemblages of the region. Pilchard and squid were sampled in similar communities and were able to attract the majority of the reef fish from the region, suggesting they are suitable bait types for stereo-BRUVs in the Agulhas ecoregion. However, a power analysis indicated that roughly twice the amount of samples are required to effectively sample the same abundances of Chrysoblephus laticeps (roman) and Cheilodactylidae (fingerfins) species when sampling with squid as opposed to pilchard. Both bait types can be locally sourced, however, squid is considerably more expensive than pilchard. Considering the difference in cost, together with the fact that twice as much squid bait is required, squid is not a cost-effective option relative to pilchard. As such this study recommends that pilchard is the most appropriate bait for the Agulhas ecoregion of South Africa. Due to low light levels, artificial lighting is required when conducting remote video research in the sub-photic zone. Blue light has a shorter wavelength than other colour lights and attenuates slower through water. In addition, blue lighting has no recorded effect on fish behaviour and has proven to be a successful light colour for underwater sampling. The use of lighting is unavoidable for sub-photic stereo-BRUVs sampling and is recommended for all stereo-BRUVs sampling for comparability of data from environments characterised by different light levels. A study was conducted to test the necessity of artificial lighting when sampling from environments characterised by ambient light levels adequate for stereo- BRUVs sampling, a comparative to measure the effect of light on the fish assemblage structure. Of the more commonly detected fish species (those observed in >50% of the samples), most were seen at similar abundances in samples using lighting and in those without lighting. No significant differences were observed in fish length data between samples collected with and samples collected without lighting. This suggests that standardised stereo-BRUVs sampling across photic zones on the continental shelf of South Africa can be collected without blue lighting when ambient light levels are sufficient to see the survey area.
- Full Text:
- Date Issued: 2017
Abalone stock enhancement at Cape Recife, Eastern Cape Province of South Africa
- Authors: Witte, Warren
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/45695 , vital:25532
- Description: The potential for restocking depleted natural reefs with hatchery abalone, Haliotis midae, to support a commercial ranching venture in the Eastern Cape Province of South Africa was investigated. A baseline stock assessment and analysis of historical fishery data provided compelling evidence of significant declines in the abalone stock, attributed to uncontrolled illegal fishing over the last 20 years at the study site. A ranching pilot study was undertaken where small-scale replicated seeding experiments were set up which quantified the effect of seed size, density and habitat on survival and growth of hatchery-reared abalone. Thirty-six experimental plots were seeded with 8400 abalone spread evenly over two broad habitats. Mean retrievals of seeded abalone were 17% ranging from 4 - 42% after a minimum of eight months at large. Release density and large-scale habitat had no significant effect on seed survival, but smaller seed size (40.0 ±3.7mm shell length) achieved higher (F1, 22 = 4.64, p = 0.042) retrievals than larger seed size (53 ±3.7mm). Growth rates were an average of 30% higher in the shallow sites compared deeper sites (t1, 1091 = -2.79, p = 0.005). There was seasonal component in growth with a 0.55 ± 0.04 mm per month higher rate in summer than during winter (t1, 1091 = -12.45, p < 0.001). Abalone seed releases were also conducted on a larger scale, which focused on the economic potential for commercial-scale ranching. Over 160 sites were seeded with 1.4 million hatchery reared abalone or 30 metric tonnes. Seventeen sites underwent long-term monitoring of survival with repeated sampling events on sites over a period of up to 666 days. Nine of these sites were seeded with 140800 small abalone (29 – 40 mm), three sites with 25100 medium abalone (30 – 46 mm) and five sites with 14700 large abalone (60 – 84 mm). There was a significant difference in survival between the seed sizes (F4,6329 = 304.3, P < 0.001). The Generalized Linear Mixed Model (GLMM) calculation estimated the instantaneous apparent mortality rate for small, medium and large abalone at 1.19 yr-1 , -0.9 yr-1 and -0.67 yr-1 , which equated to a survival rate of 21%, 28% and 36% per year respectively. The weighted mortality rate calculated according to the seed size differential mortality and the number of seed released for those sizes was 1 yr-1 or 25% survival. In conjunction with a conservative somatic growth rate of 1.2mm.m-1 and plausible emigration rates, a range of biomass harvesting estimates were obtained. Movement and mortality were investigated using video analysis which showed that hatchery seed had the ability to move considerably once released onto natural reefs and confirmed that mortality immediately following releases was due to the heavy predation pressure as confirmed by shell collections. This project has demonstrated that potential exists for ranching in South Africa and highlights critical factors that need to be addressed if ranching is to be an economically viable operation.
- Full Text:
- Date Issued: 2017
- Authors: Witte, Warren
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/45695 , vital:25532
- Description: The potential for restocking depleted natural reefs with hatchery abalone, Haliotis midae, to support a commercial ranching venture in the Eastern Cape Province of South Africa was investigated. A baseline stock assessment and analysis of historical fishery data provided compelling evidence of significant declines in the abalone stock, attributed to uncontrolled illegal fishing over the last 20 years at the study site. A ranching pilot study was undertaken where small-scale replicated seeding experiments were set up which quantified the effect of seed size, density and habitat on survival and growth of hatchery-reared abalone. Thirty-six experimental plots were seeded with 8400 abalone spread evenly over two broad habitats. Mean retrievals of seeded abalone were 17% ranging from 4 - 42% after a minimum of eight months at large. Release density and large-scale habitat had no significant effect on seed survival, but smaller seed size (40.0 ±3.7mm shell length) achieved higher (F1, 22 = 4.64, p = 0.042) retrievals than larger seed size (53 ±3.7mm). Growth rates were an average of 30% higher in the shallow sites compared deeper sites (t1, 1091 = -2.79, p = 0.005). There was seasonal component in growth with a 0.55 ± 0.04 mm per month higher rate in summer than during winter (t1, 1091 = -12.45, p < 0.001). Abalone seed releases were also conducted on a larger scale, which focused on the economic potential for commercial-scale ranching. Over 160 sites were seeded with 1.4 million hatchery reared abalone or 30 metric tonnes. Seventeen sites underwent long-term monitoring of survival with repeated sampling events on sites over a period of up to 666 days. Nine of these sites were seeded with 140800 small abalone (29 – 40 mm), three sites with 25100 medium abalone (30 – 46 mm) and five sites with 14700 large abalone (60 – 84 mm). There was a significant difference in survival between the seed sizes (F4,6329 = 304.3, P < 0.001). The Generalized Linear Mixed Model (GLMM) calculation estimated the instantaneous apparent mortality rate for small, medium and large abalone at 1.19 yr-1 , -0.9 yr-1 and -0.67 yr-1 , which equated to a survival rate of 21%, 28% and 36% per year respectively. The weighted mortality rate calculated according to the seed size differential mortality and the number of seed released for those sizes was 1 yr-1 or 25% survival. In conjunction with a conservative somatic growth rate of 1.2mm.m-1 and plausible emigration rates, a range of biomass harvesting estimates were obtained. Movement and mortality were investigated using video analysis which showed that hatchery seed had the ability to move considerably once released onto natural reefs and confirmed that mortality immediately following releases was due to the heavy predation pressure as confirmed by shell collections. This project has demonstrated that potential exists for ranching in South Africa and highlights critical factors that need to be addressed if ranching is to be an economically viable operation.
- Full Text:
- Date Issued: 2017
Genetic diversity, evolutionary relationships and conservation of southern African Labeo fishes in relation to water management
- Authors: Ramoejane, Mpho
- Date: 2017
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/5209 , vital:20786
- Description: Labeo spp. are large, herbivorous fishes that are important components of aquatic ecosystems and are a high conservation priority in South Africa. This thesis contributes to determination of conservation priorities for Labeo umbratus (Smith 1841) by resolving the taxonomic status of this species in the evolutionary context of southern African Labeo spp., assessing the presence of unique lineages in historically isolated river basins, and assessing the threat of intra- and interspecific hybridisation associated with introductions. Phylogenetic analyses of five DNA sequence data sets (cytochrome c oxidase subunit I gene [COI], cytochrome b gene [Cyt b], Recombination activating gene 1 [Rag1], COI+Rag1 and COI+Cyt b+Rag1) showed that the Labeo umbratus group (sensu Reid, 1985), which comprises the species Labeo umbratus, Labeo capensis (Smith 1841), Labeo seeberi Gilchrist and Thompson 1911 and Labeo rubromaculatus Gilchrist and Thompson 1913, is monophyletic, morphologically distinct and geographically disjunct from other African Labeo spp. groups except in the Tugela River system were L. rubromaculatus co-occurs with Labeo molybdinus Du Plessis 1963. Phylogeographic analysis of mitochondrial DNA (Cyt b) sequence data demonstrated that the populations of the L. umbratus from the Orange and the southward-flowing river systems are reciprocally monophyletic and were identified as evolutionary significant units. The populations in the southward-flowing river systems were further divided into southwestern (Gourits and Gamtoos) and southeastern (Sundays, Bushmans, Great Fish, Keiskamma, Buffalo and Nahoon) polyp hyletic sublineages. Four management units (Gourits Basin; Gamtoos Basin; Sundays+Bushmans+Great Fish River Basins; and Keiskamma+Buffalo+Nahoon River Basin) were not reciprocally monophyletic but were proposed on the basis of containing unique haplotype frequencies for conservation purposes. To evaluate the threat of hybridisation to the genetic integrity of L. umbratus, the occurrence of Labeo umbratus x L. capensis hybrids was investigated using mtDNA Cyt b and nDNA S7 intron sequence data and morphological data. Genetic evidence for interspecific hybridisation was detected for populations in two impoundments, Hardap Dam (Orange River Basin) and Darlington Dam (Sundays River Basin, Eastern Cape, South Africa). Some putative hybrids were identifiable morphologically on account of intermediacy between the parental species in meristic and morphometric characters. Translocation via direct stocking (Hardap Dam) or via an inter-basin water transfer scheme (Darlington Dam) was identified as a driver for hybridisation. Introductions associated with an inter-basin water transfer scheme has resulted in introgression between the previously isolated Orange River and southern lineages of L. umbratus. Further translocation of fish from these affected areas to non-contaminated river systems and impoundments such as Kat River (Great Fish River) and Slagboom (Sundays River) should be avoided.
- Full Text:
- Date Issued: 2017
- Authors: Ramoejane, Mpho
- Date: 2017
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/5209 , vital:20786
- Description: Labeo spp. are large, herbivorous fishes that are important components of aquatic ecosystems and are a high conservation priority in South Africa. This thesis contributes to determination of conservation priorities for Labeo umbratus (Smith 1841) by resolving the taxonomic status of this species in the evolutionary context of southern African Labeo spp., assessing the presence of unique lineages in historically isolated river basins, and assessing the threat of intra- and interspecific hybridisation associated with introductions. Phylogenetic analyses of five DNA sequence data sets (cytochrome c oxidase subunit I gene [COI], cytochrome b gene [Cyt b], Recombination activating gene 1 [Rag1], COI+Rag1 and COI+Cyt b+Rag1) showed that the Labeo umbratus group (sensu Reid, 1985), which comprises the species Labeo umbratus, Labeo capensis (Smith 1841), Labeo seeberi Gilchrist and Thompson 1911 and Labeo rubromaculatus Gilchrist and Thompson 1913, is monophyletic, morphologically distinct and geographically disjunct from other African Labeo spp. groups except in the Tugela River system were L. rubromaculatus co-occurs with Labeo molybdinus Du Plessis 1963. Phylogeographic analysis of mitochondrial DNA (Cyt b) sequence data demonstrated that the populations of the L. umbratus from the Orange and the southward-flowing river systems are reciprocally monophyletic and were identified as evolutionary significant units. The populations in the southward-flowing river systems were further divided into southwestern (Gourits and Gamtoos) and southeastern (Sundays, Bushmans, Great Fish, Keiskamma, Buffalo and Nahoon) polyp hyletic sublineages. Four management units (Gourits Basin; Gamtoos Basin; Sundays+Bushmans+Great Fish River Basins; and Keiskamma+Buffalo+Nahoon River Basin) were not reciprocally monophyletic but were proposed on the basis of containing unique haplotype frequencies for conservation purposes. To evaluate the threat of hybridisation to the genetic integrity of L. umbratus, the occurrence of Labeo umbratus x L. capensis hybrids was investigated using mtDNA Cyt b and nDNA S7 intron sequence data and morphological data. Genetic evidence for interspecific hybridisation was detected for populations in two impoundments, Hardap Dam (Orange River Basin) and Darlington Dam (Sundays River Basin, Eastern Cape, South Africa). Some putative hybrids were identifiable morphologically on account of intermediacy between the parental species in meristic and morphometric characters. Translocation via direct stocking (Hardap Dam) or via an inter-basin water transfer scheme (Darlington Dam) was identified as a driver for hybridisation. Introductions associated with an inter-basin water transfer scheme has resulted in introgression between the previously isolated Orange River and southern lineages of L. umbratus. Further translocation of fish from these affected areas to non-contaminated river systems and impoundments such as Kat River (Great Fish River) and Slagboom (Sundays River) should be avoided.
- Full Text:
- Date Issued: 2017
Diurnal and nocturnal activity patterns and habitat use of Algoa Bay’s rocky reef fish community
- Authors: Juby, Roxanne
- Date: 2017
- Subjects: Reef fishes -- Effect of light on , Reef fishes -- South Africa , Underwater videography in wildlife monitoring -- South Africa -- Tsitsikamma
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/44827 , vital:25445
- Description: Distinct day-night changes in ambient light are recognised as an important driver of animal activity patterns, with predictable changes to the structure and composition of animal communities between day and night. While day-night variation in the structure of animal communities has been well researched for terrestrial organisms and shallow marine fish communities around the world, there has been limited research of this type conducted on South Africa’s rocky reef fish communities. Consequently, we have a poor understanding of how nocturnal reef fish communities are structured and the day-night activity patterns of species inhabiting both shallow (10-30m) and deep-aphotic (55-100m) reefs. This research was conducted at two warm-temperate South African rocky reefs situated in Algoa Bay. The importance of natural ambient light in shaping the distribution of reef fish communities at shallow and deep-aphotic reef sites was demonstrated using baited remote underwater stereo-video systems (stereo-BRUVs). Distinct day and night fish communities were sampled at shallow and deep-aphotic reef sites. These differences were driven by significant changes in species richness (p < 0.001), species abundance (p < 0.001) and community composition (p < 0.001). These shifts appeared to be driven by day-night activity patterns that were the result of increased detectability of certain species at either day or night. The majority of species belonging to the family Sparidae showed evidence of strict diurnal activity, with their activity being further restricted to shallow reefs. These species showed evidence that they may enter micro-habitats within the reef at night. Similar activity patterns were shown for other top predatory teleost species and low level consumers, with substantial reductions in abundances, or no recordings at night throughout this study. Shallow reefs at day harboured the most diverse fish community. It is therefore hypothesised that this habitat was associated with conditions that offered improved access to resources for many visual species. In addition, the diverse community inhabiting shallow reefs at day is associated with a high risk of negative interspecies interactions, such as competition and predation. It is hypothesised that the biotic conditions associated with shallow reefs at day drove three movement patterns identified in this study; Pagellus bellottii natalensis showed evidence of movement onto shallow reefs at night from adjacent sandy flats, while Pterogymnus laniarius and Squalus sp. 1 showed evidence of movement onto shallow reefs at night from the deep- aphotic reefs that remain dark throughout the diel cycle. It is further hypothesised that other species which showed evidence for nocturnal activity, i.e. Galeichthys ater, Eptatretus hexatrema and Haploblepharus edwardsii, may enter sheltered micro-habitats within the reef during day light hours. These findings have highlighted the complex patterns that have evolved within marine fish to allow multiple species to coexist and exploit productive reef ecosystems by partitioning resource use and activity patterns at day or night, between depth zones and habitat types.
- Full Text:
- Date Issued: 2017
- Authors: Juby, Roxanne
- Date: 2017
- Subjects: Reef fishes -- Effect of light on , Reef fishes -- South Africa , Underwater videography in wildlife monitoring -- South Africa -- Tsitsikamma
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/44827 , vital:25445
- Description: Distinct day-night changes in ambient light are recognised as an important driver of animal activity patterns, with predictable changes to the structure and composition of animal communities between day and night. While day-night variation in the structure of animal communities has been well researched for terrestrial organisms and shallow marine fish communities around the world, there has been limited research of this type conducted on South Africa’s rocky reef fish communities. Consequently, we have a poor understanding of how nocturnal reef fish communities are structured and the day-night activity patterns of species inhabiting both shallow (10-30m) and deep-aphotic (55-100m) reefs. This research was conducted at two warm-temperate South African rocky reefs situated in Algoa Bay. The importance of natural ambient light in shaping the distribution of reef fish communities at shallow and deep-aphotic reef sites was demonstrated using baited remote underwater stereo-video systems (stereo-BRUVs). Distinct day and night fish communities were sampled at shallow and deep-aphotic reef sites. These differences were driven by significant changes in species richness (p < 0.001), species abundance (p < 0.001) and community composition (p < 0.001). These shifts appeared to be driven by day-night activity patterns that were the result of increased detectability of certain species at either day or night. The majority of species belonging to the family Sparidae showed evidence of strict diurnal activity, with their activity being further restricted to shallow reefs. These species showed evidence that they may enter micro-habitats within the reef at night. Similar activity patterns were shown for other top predatory teleost species and low level consumers, with substantial reductions in abundances, or no recordings at night throughout this study. Shallow reefs at day harboured the most diverse fish community. It is therefore hypothesised that this habitat was associated with conditions that offered improved access to resources for many visual species. In addition, the diverse community inhabiting shallow reefs at day is associated with a high risk of negative interspecies interactions, such as competition and predation. It is hypothesised that the biotic conditions associated with shallow reefs at day drove three movement patterns identified in this study; Pagellus bellottii natalensis showed evidence of movement onto shallow reefs at night from adjacent sandy flats, while Pterogymnus laniarius and Squalus sp. 1 showed evidence of movement onto shallow reefs at night from the deep- aphotic reefs that remain dark throughout the diel cycle. It is further hypothesised that other species which showed evidence for nocturnal activity, i.e. Galeichthys ater, Eptatretus hexatrema and Haploblepharus edwardsii, may enter sheltered micro-habitats within the reef during day light hours. These findings have highlighted the complex patterns that have evolved within marine fish to allow multiple species to coexist and exploit productive reef ecosystems by partitioning resource use and activity patterns at day or night, between depth zones and habitat types.
- Full Text:
- Date Issued: 2017
Colonisation and succession of fishes in Lake Liambezi, a shallow ephemeral floodplain lake in Southern Africa
- Authors: Peel, Richard Anthony
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/65211 , vital:28707
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
- Authors: Peel, Richard Anthony
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/65211 , vital:28707
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
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