Reflections on Teaching Africa in South Africa:
- Authors: Matthews, Sally
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142235 , vital:38061 , DOI: 10.1111/1467-9256.12107
- Description: This article draws on the author’s experience of teaching African Studies to undergraduate South African students in order to reflect on some of the key challenges facing teachers of African Studies, both in South Africa and beyond. In particular, it discusses challenges relating to teaching a field as contested as African Studies, looking at whether teaching African alternatives to mainstream African politics is helpful and at whether and how one can teach Africa in a way that encourages and develops critical thinking. The article also explores how the racial politics of the context in which one teaches African Studies inevitably affects the way in which students engage with the content of the course. While the article discusses these issues in relation to the South African higher education context in particular, implications for other contexts are also highlighted.
- Full Text:
- Date Issued: 2016
- Authors: Matthews, Sally
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142235 , vital:38061 , DOI: 10.1111/1467-9256.12107
- Description: This article draws on the author’s experience of teaching African Studies to undergraduate South African students in order to reflect on some of the key challenges facing teachers of African Studies, both in South Africa and beyond. In particular, it discusses challenges relating to teaching a field as contested as African Studies, looking at whether teaching African alternatives to mainstream African politics is helpful and at whether and how one can teach Africa in a way that encourages and develops critical thinking. The article also explores how the racial politics of the context in which one teaches African Studies inevitably affects the way in which students engage with the content of the course. While the article discusses these issues in relation to the South African higher education context in particular, implications for other contexts are also highlighted.
- Full Text:
- Date Issued: 2016
The influence of photoperiod on the reproductive physiology of the greater red musk shrew: Crocidura flavescens
- Hoole, C, McKechnie, Andrew E, Parker, Daniel M, Bennett, Nigel C
- Authors: Hoole, C , McKechnie, Andrew E , Parker, Daniel M , Bennett, Nigel C
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/70136 , vital:29624 , https://doi.org/10.1139/cjz-2015-0128
- Description: Photoperiodism involves the use of both absolute measures of day length and the direction in which day length is changing as a cue for regulating seasonal changes in physiology and behaviour so that birth and lactation coincide with optimal resource availability, increasing offspring survival. Induced ovulation and opportunistic breeding is often found in species that are predominantly solitary and territorial. In this study, the photoperiodic reproductive responses of male greater red musk shrews (Crocidura flavescens (I. Geoffroy Saint-Hilaire, 1827)) were investigated in the laboratory. The presence of spermatozoa regardless of the light cycle, suggest that although the shrews are photoresponsive, they may be capable of breeding throughout the year. Significantly greater testicular volume and eminiferous tubule diameter following exposure to a short day-light cycle suggests that these animals may have breeding peaks that correspond to short days. The presence of epidermal spines on the penis indicates that the shrew is likely also an induced ovulator. Flexible breeding patterns combined with induced ovulation affords this solitary species the greatest chance of reproductive success.
- Full Text: false
- Date Issued: 2016
- Authors: Hoole, C , McKechnie, Andrew E , Parker, Daniel M , Bennett, Nigel C
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/70136 , vital:29624 , https://doi.org/10.1139/cjz-2015-0128
- Description: Photoperiodism involves the use of both absolute measures of day length and the direction in which day length is changing as a cue for regulating seasonal changes in physiology and behaviour so that birth and lactation coincide with optimal resource availability, increasing offspring survival. Induced ovulation and opportunistic breeding is often found in species that are predominantly solitary and territorial. In this study, the photoperiodic reproductive responses of male greater red musk shrews (Crocidura flavescens (I. Geoffroy Saint-Hilaire, 1827)) were investigated in the laboratory. The presence of spermatozoa regardless of the light cycle, suggest that although the shrews are photoresponsive, they may be capable of breeding throughout the year. Significantly greater testicular volume and eminiferous tubule diameter following exposure to a short day-light cycle suggests that these animals may have breeding peaks that correspond to short days. The presence of epidermal spines on the penis indicates that the shrew is likely also an induced ovulator. Flexible breeding patterns combined with induced ovulation affords this solitary species the greatest chance of reproductive success.
- Full Text: false
- Date Issued: 2016
A River of Blood Flows: Lerato Shadi’s ‘Noka Ya Bokamoso’
- Authors: Makandula, Sikhumbuzo
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147258 , vital:38609 , https://artthrob.co.za/2016/07/13/a-river-of-blood-flows-lerato-shadis-noka-ya-bokamoso/
- Description: The title of Lerato Shadi’s show, ‘Noka Ya Bokamoso,’ which opened at National Arts Festival in Grahamstown, translates from Setswana to ‘a river of tomorrow.’ In the Albany gallery you encounter Shadi performing Mosako Wa Nako. She sits silently crocheting a ball of red wool into a scroll which unfurls with indecipherable writing. Shadi’s isolation from the rest of the artworks on the exhibition draws you closer, emphasising the rhythmic movement of her hands.
- Full Text:
- Date Issued: 2016
- Authors: Makandula, Sikhumbuzo
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147258 , vital:38609 , https://artthrob.co.za/2016/07/13/a-river-of-blood-flows-lerato-shadis-noka-ya-bokamoso/
- Description: The title of Lerato Shadi’s show, ‘Noka Ya Bokamoso,’ which opened at National Arts Festival in Grahamstown, translates from Setswana to ‘a river of tomorrow.’ In the Albany gallery you encounter Shadi performing Mosako Wa Nako. She sits silently crocheting a ball of red wool into a scroll which unfurls with indecipherable writing. Shadi’s isolation from the rest of the artworks on the exhibition draws you closer, emphasising the rhythmic movement of her hands.
- Full Text:
- Date Issued: 2016
“Turn on” fluorescence enhancement of Zn octacarboxyphthaloyanine-graphene oxide conjugates by hydrogen peroxide
- Shumba, Munyaradzi, Mashazi, Philani N, Nyokong, Tebello
- Authors: Shumba, Munyaradzi , Mashazi, Philani N , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/190438 , vital:44994 , xlink:href="https://doi.org/10.1016/j.jlumin.2015.11.001"
- Description: Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates were characterized by absorption spectroscopy, transmission electron microscopy, fluorescence spectroscopy, X-ray diffraction, thermo gravimetric analysis and X-ray photon spectroscopy. The presence of reduced graphene oxide or graphene oxide resulted in the quenching (turn on) of Zn octacarboxy phthalocyanine fluorescence which can be explained by photoinduced electron transfer. Zn octacarboxy phthalocyaninereduced graphene oxide or graphene oxide conjugates “turned on” fluorescence showed a linear response to hydrogen peroxide hence their potential to be used as sensors. The nanoprobe developed showed high selectivity towards hydrogen peroxide in the presence of physiological interferences.
- Full Text:
- Date Issued: 2016
- Authors: Shumba, Munyaradzi , Mashazi, Philani N , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/190438 , vital:44994 , xlink:href="https://doi.org/10.1016/j.jlumin.2015.11.001"
- Description: Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates were characterized by absorption spectroscopy, transmission electron microscopy, fluorescence spectroscopy, X-ray diffraction, thermo gravimetric analysis and X-ray photon spectroscopy. The presence of reduced graphene oxide or graphene oxide resulted in the quenching (turn on) of Zn octacarboxy phthalocyanine fluorescence which can be explained by photoinduced electron transfer. Zn octacarboxy phthalocyaninereduced graphene oxide or graphene oxide conjugates “turned on” fluorescence showed a linear response to hydrogen peroxide hence their potential to be used as sensors. The nanoprobe developed showed high selectivity towards hydrogen peroxide in the presence of physiological interferences.
- Full Text:
- Date Issued: 2016
Influence of argon-implantation on conventional and phototransferred thermoluminescence of synthetic quartz
- Nsengiyumva, S, Chithambo, Makaiko L, Pichon, L
- Authors: Nsengiyumva, S , Chithambo, Makaiko L , Pichon, L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124732 , vital:35656 , DOI: 10.1080/10420150.2016.1194412
- Description: Conventional and phototransferred thermoluminescence of crystalline synthetic quartz implanted with 70 keV Ar ions at fluences in the range 1 × 1014–5 × 1015 ions/cm2 is reported. The glow curves, recorded at 5°C/s from beta-irradiated samples of similar mass, show a prominent peak between 100°C and 120°C. The thermoluminescence intensity of all implanted samples was greater than that of the unimplanted one. The increase in sensitivity is attributed to a corresponding increase in the concentration of point defects, as a result of the implantation, which act as electron traps or recombination centres. Kinetic analysis carried out using the peak shape, whole glow-peak and curve-fitting methods produced values of the activation energy, frequency factor and order of kinetics that are generally independent of implantation fluence. This result suggests that implantation did not necessarily affect the nature of the electron traps. With respect to phototransferred thermoluminescence, it was observed that it only appeared in the sample implanted at the highest fluence of 5 × 1015 ions/cm2. This may be so because the concentration of deep traps produced as a result of implantation at low fluence is too low to give rise to phototransferred thermoluminescence. The intensity of the phototransferred thermoluminescence goes through a peak with illumination time. We attribute this behaviour to the relative concentration of holes at recombination centres and phototransferred electrons at shallow traps.
- Full Text: false
- Date Issued: 2016
- Authors: Nsengiyumva, S , Chithambo, Makaiko L , Pichon, L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124732 , vital:35656 , DOI: 10.1080/10420150.2016.1194412
- Description: Conventional and phototransferred thermoluminescence of crystalline synthetic quartz implanted with 70 keV Ar ions at fluences in the range 1 × 1014–5 × 1015 ions/cm2 is reported. The glow curves, recorded at 5°C/s from beta-irradiated samples of similar mass, show a prominent peak between 100°C and 120°C. The thermoluminescence intensity of all implanted samples was greater than that of the unimplanted one. The increase in sensitivity is attributed to a corresponding increase in the concentration of point defects, as a result of the implantation, which act as electron traps or recombination centres. Kinetic analysis carried out using the peak shape, whole glow-peak and curve-fitting methods produced values of the activation energy, frequency factor and order of kinetics that are generally independent of implantation fluence. This result suggests that implantation did not necessarily affect the nature of the electron traps. With respect to phototransferred thermoluminescence, it was observed that it only appeared in the sample implanted at the highest fluence of 5 × 1015 ions/cm2. This may be so because the concentration of deep traps produced as a result of implantation at low fluence is too low to give rise to phototransferred thermoluminescence. The intensity of the phototransferred thermoluminescence goes through a peak with illumination time. We attribute this behaviour to the relative concentration of holes at recombination centres and phototransferred electrons at shallow traps.
- Full Text: false
- Date Issued: 2016
Colonised minds?: post-development theory and the desirability of development in Africa
- Authors: Matthews, Sally
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142213 , vital:38059 , DOI: 10.1080/01436597.2017.1279540
- Description: While post-development theory is very concerned with the ways in which development has impacted upon the countries of the Global South, there has been relatively little written on post-development theory from an African perspective. This paper identifies some of the ways in which post-development theory fails to adequately understand the African experience of development. In particular, I explore the difficulty that post-development theory confronts when faced with the continued desire on the part of many people in Africa for development.
- Full Text:
- Date Issued: 2017
- Authors: Matthews, Sally
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142213 , vital:38059 , DOI: 10.1080/01436597.2017.1279540
- Description: While post-development theory is very concerned with the ways in which development has impacted upon the countries of the Global South, there has been relatively little written on post-development theory from an African perspective. This paper identifies some of the ways in which post-development theory fails to adequately understand the African experience of development. In particular, I explore the difficulty that post-development theory confronts when faced with the continued desire on the part of many people in Africa for development.
- Full Text:
- Date Issued: 2017
Preference for C4 shade grasses increases hatchling performance in the butterfly, Bicyclus safitza
- Nokelainen, Ossi, Ripley, Bradford Sherman, Van Bergen, Erik, Osborne, Colin P, Brakefield, Paul M
- Authors: Nokelainen, Ossi , Ripley, Bradford Sherman , Van Bergen, Erik , Osborne, Colin P , Brakefield, Paul M
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61424 , vital:28025 , http://onlinelibrary.wiley.com/doi/10.1002/ece3.2235/full
- Description: The Miocene radiation of C4 grasses under high-temperature and low ambient CO2 levels occurred alongside the transformation of a largely forested landscape into savanna. This inevitably changed the host plant regime of herbivores, and the simultaneous diversification of many consumer lineages, including Bicyclus butterflies in Africa, suggests that the radiations of grasses and grazers may be evolutionary linked. We examined mechanisms for this plant–herbivore interaction with the grass-feeding Bicyclus safitza in South Africa. In a controlled environment, we tested oviposition preference and hatchling performance on local grasses with C3 or C4 photosynthetic pathways that grow either in open or shaded habitats. We predicted preference for C3 plants due to a hypothesized lower processing cost and higher palatability to herbivores. In contrast, we found that females preferred C4 shade grasses rather than either C4 grasses from open habitats or C3 grasses. The oviposition preference broadly followed hatchling performance, although hatchling survival was equally good on C4 or C3 shade grasses. This finding was explained by leaf toughness; shade grasses were softer than grasses from open habitats. Field monitoring revealed a preference of adults for shaded habitats, and stable isotope analysis of field-sampled individuals confirmed their preference for C4 grasses as host plants. Our findings suggest that plant–herbivore interactions can influence the direction of selection in a grass-feeding butterfly. Based on this work, we postulate future research to test whether these interactions more generally contribute to radiations in herbivorous insects via expansions into new, unexploited ecological niches.
- Full Text:
- Date Issued: 2016
- Authors: Nokelainen, Ossi , Ripley, Bradford Sherman , Van Bergen, Erik , Osborne, Colin P , Brakefield, Paul M
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61424 , vital:28025 , http://onlinelibrary.wiley.com/doi/10.1002/ece3.2235/full
- Description: The Miocene radiation of C4 grasses under high-temperature and low ambient CO2 levels occurred alongside the transformation of a largely forested landscape into savanna. This inevitably changed the host plant regime of herbivores, and the simultaneous diversification of many consumer lineages, including Bicyclus butterflies in Africa, suggests that the radiations of grasses and grazers may be evolutionary linked. We examined mechanisms for this plant–herbivore interaction with the grass-feeding Bicyclus safitza in South Africa. In a controlled environment, we tested oviposition preference and hatchling performance on local grasses with C3 or C4 photosynthetic pathways that grow either in open or shaded habitats. We predicted preference for C3 plants due to a hypothesized lower processing cost and higher palatability to herbivores. In contrast, we found that females preferred C4 shade grasses rather than either C4 grasses from open habitats or C3 grasses. The oviposition preference broadly followed hatchling performance, although hatchling survival was equally good on C4 or C3 shade grasses. This finding was explained by leaf toughness; shade grasses were softer than grasses from open habitats. Field monitoring revealed a preference of adults for shaded habitats, and stable isotope analysis of field-sampled individuals confirmed their preference for C4 grasses as host plants. Our findings suggest that plant–herbivore interactions can influence the direction of selection in a grass-feeding butterfly. Based on this work, we postulate future research to test whether these interactions more generally contribute to radiations in herbivorous insects via expansions into new, unexploited ecological niches.
- Full Text:
- Date Issued: 2016
Interaction of graphene quantum dots with 4-acetamido-2, 2, 6, 6-tetramethylpiperidine-oxyl free radicals
- Achadu, Ojodomo John, Nyokong, Tebello
- Authors: Achadu, Ojodomo John , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189031 , vital:44810 , xlink:href="https://doi.org/10.1007/s10895-015-1712-0"
- Description: We report on the interaction of graphene quantum dots (GQDs) with 4-acetamido-2,2,6,6-tetramethylpiperidineoxyl (4-acetamido-TEMPO) free radicals. The GQDs were N and S, N doped. The fluorescence quantum yields were higher for the doped GQDs compared to the undoped. The interaction is assessed by spectrofluorimetric, steady state/time resolved fluorescence and electron paramagnetic resonance (EPR) techniques. Fluorescence quenching was observed upon the addition of 4-acetamido-TEMPO to the GQDs. Photoinduced electron transfer (PET) mechanism was suggested as the plausible mechanism involved in the fluorescence quenching in which 4-acetamido-TEMPO acted as the electron acceptor.
- Full Text:
- Date Issued: 2016
- Authors: Achadu, Ojodomo John , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189031 , vital:44810 , xlink:href="https://doi.org/10.1007/s10895-015-1712-0"
- Description: We report on the interaction of graphene quantum dots (GQDs) with 4-acetamido-2,2,6,6-tetramethylpiperidineoxyl (4-acetamido-TEMPO) free radicals. The GQDs were N and S, N doped. The fluorescence quantum yields were higher for the doped GQDs compared to the undoped. The interaction is assessed by spectrofluorimetric, steady state/time resolved fluorescence and electron paramagnetic resonance (EPR) techniques. Fluorescence quenching was observed upon the addition of 4-acetamido-TEMPO to the GQDs. Photoinduced electron transfer (PET) mechanism was suggested as the plausible mechanism involved in the fluorescence quenching in which 4-acetamido-TEMPO acted as the electron acceptor.
- Full Text:
- Date Issued: 2016
Collaborative learning of water conservation practices: cultivation and expansion of a learning network around rainwater harvesting demonstration sites in the Eastern Cape, South Africa
- Pesanayi, Tichaona V, Weaver, Kim N
- Authors: Pesanayi, Tichaona V , Weaver, Kim N
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/392086 , vital:68720 , xlink:href="https://www.ajol.info/index.php/sajae/article/view/138570"
- Description: Learning together in mediated voluntary networks can mobilise skills and innovations that help to facilitate learning and uptake of rainwater harvesting and conservation practices. It boosts extension capacity while at the same time growing farmer capabilities, tapping on the distributed cognition. These practices help to heal wicked problems of drought and global change challenges affecting marginalised farmers in South Africa. South Africa has water, nutrition and food security challenges, especially the Eastern Cape Province where there is a relatively high level of poverty. These challenges place heavy pressure on the agricultural sector as it is the main user of the allocated water in the country. In this paper, the learning of and agency for rainwater harvesting and conservation practices are explored as responses to these challenges. Despite existing cultural histories of such practices among the amaXhosa people, information on these practices is not readily available to small-scale rural farmers who thus struggle for the want of knowing. This research forms part of a Water Research Commission project, Amanzi for Food, whose intention is to mediate collaborative and co-engaged learning among networked farmers, extension workers, researchers and agricultural educators through course-mediated use of Water Research Commission rainwater harvesting and conservation materials.
- Full Text:
- Date Issued: 2016
- Authors: Pesanayi, Tichaona V , Weaver, Kim N
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/392086 , vital:68720 , xlink:href="https://www.ajol.info/index.php/sajae/article/view/138570"
- Description: Learning together in mediated voluntary networks can mobilise skills and innovations that help to facilitate learning and uptake of rainwater harvesting and conservation practices. It boosts extension capacity while at the same time growing farmer capabilities, tapping on the distributed cognition. These practices help to heal wicked problems of drought and global change challenges affecting marginalised farmers in South Africa. South Africa has water, nutrition and food security challenges, especially the Eastern Cape Province where there is a relatively high level of poverty. These challenges place heavy pressure on the agricultural sector as it is the main user of the allocated water in the country. In this paper, the learning of and agency for rainwater harvesting and conservation practices are explored as responses to these challenges. Despite existing cultural histories of such practices among the amaXhosa people, information on these practices is not readily available to small-scale rural farmers who thus struggle for the want of knowing. This research forms part of a Water Research Commission project, Amanzi for Food, whose intention is to mediate collaborative and co-engaged learning among networked farmers, extension workers, researchers and agricultural educators through course-mediated use of Water Research Commission rainwater harvesting and conservation materials.
- Full Text:
- Date Issued: 2016
Listening to the ‘Born Frees’: politics and disillusionment in South Africa
- Malila, Vanessa, Garman, Anthea
- Authors: Malila, Vanessa , Garman, Anthea
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158884 , vital:40237 , https://doi.org/10.1080/23743670.2015.1084587
- Description: In 2014 South Africa celebrated 20 years of democracy, and for many of the ‘Born Frees’ – those who came of age politically after 1996 – this was their first opportunity to vote in national elections. With democracy came the promise for South Africa's marginalised majority of voice and agency, but also the implicit promise that their democratically elected government would listen to them. In addition, the South African media have long championed their role as a voice for the voiceless. This article presents work done with youngsters from South Africa's poorest province, the Eastern Cape, in an effort to listen to their experience of politics and to understand their use of the media – especially whether it enables them to speak out and be heard in the public sphere.
- Full Text:
- Date Issued: 2016
- Authors: Malila, Vanessa , Garman, Anthea
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158884 , vital:40237 , https://doi.org/10.1080/23743670.2015.1084587
- Description: In 2014 South Africa celebrated 20 years of democracy, and for many of the ‘Born Frees’ – those who came of age politically after 1996 – this was their first opportunity to vote in national elections. With democracy came the promise for South Africa's marginalised majority of voice and agency, but also the implicit promise that their democratically elected government would listen to them. In addition, the South African media have long championed their role as a voice for the voiceless. This article presents work done with youngsters from South Africa's poorest province, the Eastern Cape, in an effort to listen to their experience of politics and to understand their use of the media – especially whether it enables them to speak out and be heard in the public sphere.
- Full Text:
- Date Issued: 2016
MARS: Motif Assessment and Ranking Suite for transcription factor binding motifs
- Kibet, Caleb K, Machanick, Philip
- Authors: Kibet, Caleb K , Machanick, Philip
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61155 , vital:27985 , http://dx.doi.org/10.1101/065615
- Description: We describe MARS (Motif Assessment and Ranking Suite), a web-based suite of tools used to evaluate and rank PWM-based motifs. The increased number of learned motif models that are spread across databases and in different PWM formats, leading to a choice dilemma among the users, is our motivation. This increase has been driven by the difficulty of modelling transcription factor binding sites and the advance in high-throughput sequencing technologies at a continually reducing cost. Therefore, several experimental techniques have been developed resulting in diverse motif-finding algorithms and databases. We collate a wide variety of available motifs into a benchmark database, including the corresponding experimental ChIP-seq and PBM data obtained from ENCODE and UniPROBE databases, respectively. The implemented tools include: a data-independent consistency-based motif assessment and ranking (CB-MAR), which is based on the idea that `correct motifs' are more similar to each other while incorrect motifs will differ from each other; and a scoring and classification-based algorithms, which rank binding models by their ability to discriminate sequences known to contain binding sites from those without. The CB-MAR and scoring techniques have a 0.86 and 0.73 median rank correlation using ChIP-seq and PBM respectively. Best motifs selected by CB-MAR achieve a mean AUC of 0.75, comparable to those ranked by held out data at 0.76 { this is based on ChIP-seq motif discovery using five algorithms on 110 transcription factors. We have demonstrated the benefit of this web server in motif choice and ranking, as well as in motif.
- Full Text:
- Date Issued: 2016
- Authors: Kibet, Caleb K , Machanick, Philip
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61155 , vital:27985 , http://dx.doi.org/10.1101/065615
- Description: We describe MARS (Motif Assessment and Ranking Suite), a web-based suite of tools used to evaluate and rank PWM-based motifs. The increased number of learned motif models that are spread across databases and in different PWM formats, leading to a choice dilemma among the users, is our motivation. This increase has been driven by the difficulty of modelling transcription factor binding sites and the advance in high-throughput sequencing technologies at a continually reducing cost. Therefore, several experimental techniques have been developed resulting in diverse motif-finding algorithms and databases. We collate a wide variety of available motifs into a benchmark database, including the corresponding experimental ChIP-seq and PBM data obtained from ENCODE and UniPROBE databases, respectively. The implemented tools include: a data-independent consistency-based motif assessment and ranking (CB-MAR), which is based on the idea that `correct motifs' are more similar to each other while incorrect motifs will differ from each other; and a scoring and classification-based algorithms, which rank binding models by their ability to discriminate sequences known to contain binding sites from those without. The CB-MAR and scoring techniques have a 0.86 and 0.73 median rank correlation using ChIP-seq and PBM respectively. Best motifs selected by CB-MAR achieve a mean AUC of 0.75, comparable to those ranked by held out data at 0.76 { this is based on ChIP-seq motif discovery using five algorithms on 110 transcription factors. We have demonstrated the benefit of this web server in motif choice and ranking, as well as in motif.
- Full Text:
- Date Issued: 2016
The limitations of current health literacy measures for use in developing countries:
- Authors: Dowse, Roslind
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156607 , vital:40030 , DOI: 10.1080/17538068.2016.1147742
- Description: Health literacy measures have largely emanated from developed countries, reflecting the characteristics of their economies, populations, and health systems. In contrast, it is disconcerting that health literacy appears to be so under-researched in developing countries (DCs), despite the likelihood of inadequate health literacy being endemic. In this commentary, I highlight some challenges when using existing health literacy measures in DCs and conclude with a summary of considerations when using/developing a tool for these populations.
- Full Text:
- Date Issued: 2016
- Authors: Dowse, Roslind
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156607 , vital:40030 , DOI: 10.1080/17538068.2016.1147742
- Description: Health literacy measures have largely emanated from developed countries, reflecting the characteristics of their economies, populations, and health systems. In contrast, it is disconcerting that health literacy appears to be so under-researched in developing countries (DCs), despite the likelihood of inadequate health literacy being endemic. In this commentary, I highlight some challenges when using existing health literacy measures in DCs and conclude with a summary of considerations when using/developing a tool for these populations.
- Full Text:
- Date Issued: 2016
Thermoluminescence of kunzite: a study of kinetic processes and dosimetry characteristics
- Ogundare, F O, Alatishe, M A, Chithambo, Makaiko L, Costin, G
- Authors: Ogundare, F O , Alatishe, M A , Chithambo, Makaiko L , Costin, G
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124701 , vital:35650 , https://doi.org/10.1016/j.nimb.2016.02.059
- Description: Since the use of natural minerals for dating and dose reconstruction using luminescence techniques is well-established and always of interest, we present thermoluminescence characteristics of kunzite, a gem variety of spodumene. The chemical composition of the sample was determined using an Electron Probe MicroAnalyzer.
- Full Text: false
- Date Issued: 2016
- Authors: Ogundare, F O , Alatishe, M A , Chithambo, Makaiko L , Costin, G
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124701 , vital:35650 , https://doi.org/10.1016/j.nimb.2016.02.059
- Description: Since the use of natural minerals for dating and dose reconstruction using luminescence techniques is well-established and always of interest, we present thermoluminescence characteristics of kunzite, a gem variety of spodumene. The chemical composition of the sample was determined using an Electron Probe MicroAnalyzer.
- Full Text: false
- Date Issued: 2016
Case Studies for UNECCC, UNESCO and CEE The COPART Climate Train
- Authors: McGarry, Dylan K
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/391120 , vital:68622 , xlink:href="https://eeasa.org.za/wp-content/uploads/2017/05/EEASA-Bullitin-2016_18-July-issue-42.pdf"
- Description: To create a listening and educational platform that used various disciplines to understand the impact of Climate Change across South Africa. The objective was to create a multigenre educational space for citizens of South Africa as a means to participate in Climate discussions as an alternative to the COP17 negotiations held in South Africa at the time.
- Full Text:
- Date Issued: 2016
- Authors: McGarry, Dylan K
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/391120 , vital:68622 , xlink:href="https://eeasa.org.za/wp-content/uploads/2017/05/EEASA-Bullitin-2016_18-July-issue-42.pdf"
- Description: To create a listening and educational platform that used various disciplines to understand the impact of Climate Change across South Africa. The objective was to create a multigenre educational space for citizens of South Africa as a means to participate in Climate discussions as an alternative to the COP17 negotiations held in South Africa at the time.
- Full Text:
- Date Issued: 2016
Constructions of roles in studio teaching and learning
- Authors: Belluigi, Dina Z
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59792 , vital:27651 , https://doi.org/10.1111/jade.12042
- Description: Various constructions of supervisors and students emerge from education literature on art, design and architecture studio pedagogy. Constructions of the supervisor within the studio and during assessment are considered, with a discussion of the threads which underpin them. This is followed by a discussion of some of the current dominant constructions of the student, and possible effects of these roles and relationships on their engagement with learning. As many of these constructions may be inherited or unconscious, a concern for the agency of those involved to rupture, subvert, rescript or resist such constructions motivates this research, while acknowledging that this may be limited by structural and cultural contexts.
- Full Text: false
- Date Issued: 2016
- Authors: Belluigi, Dina Z
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/59792 , vital:27651 , https://doi.org/10.1111/jade.12042
- Description: Various constructions of supervisors and students emerge from education literature on art, design and architecture studio pedagogy. Constructions of the supervisor within the studio and during assessment are considered, with a discussion of the threads which underpin them. This is followed by a discussion of some of the current dominant constructions of the student, and possible effects of these roles and relationships on their engagement with learning. As many of these constructions may be inherited or unconscious, a concern for the agency of those involved to rupture, subvert, rescript or resist such constructions motivates this research, while acknowledging that this may be limited by structural and cultural contexts.
- Full Text: false
- Date Issued: 2016
‘Abagyenda bareeba. Those who Travel, See’: Home, Migration and the Maternal Bond in Doreen Baingana’s Tropical Fish
- Authors: Spencer, Lynda G
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/139017 , vital:37696 , https://doi.org/10.1080/00020184.2016.1182319
- Description: Doreen Baingana’s Tropical Fish explores the migratory experiences of the main narrator-focalizer, Christine Mugisha, as she travels from Uganda to the United States of America. Although the analyses of home, exile, and migration by writers like Edward Said and Paul Tiyambe Zeleza tend to be ungendered; Baingana seems to elaborate on these concerns by reflecting on the gendered experience of travel. As Carole Boyce Davies has argued, the act of travelling and migration opens up new spaces and possibilities for black women writers as they come into contact with multiple places and cultures. In their encounters with migration, black women are able to negotiate and re-negotiate their identities. This article focuses on how Tropical Fish, interrogates complex, contradictory, ambiguous and often conflicted questions of home and migration with their concomitant issues of belonging and alienation/ estrangement and how they are intimately tied to the maternal bond.
- Full Text:
- Date Issued: 2016
- Authors: Spencer, Lynda G
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/139017 , vital:37696 , https://doi.org/10.1080/00020184.2016.1182319
- Description: Doreen Baingana’s Tropical Fish explores the migratory experiences of the main narrator-focalizer, Christine Mugisha, as she travels from Uganda to the United States of America. Although the analyses of home, exile, and migration by writers like Edward Said and Paul Tiyambe Zeleza tend to be ungendered; Baingana seems to elaborate on these concerns by reflecting on the gendered experience of travel. As Carole Boyce Davies has argued, the act of travelling and migration opens up new spaces and possibilities for black women writers as they come into contact with multiple places and cultures. In their encounters with migration, black women are able to negotiate and re-negotiate their identities. This article focuses on how Tropical Fish, interrogates complex, contradictory, ambiguous and often conflicted questions of home and migration with their concomitant issues of belonging and alienation/ estrangement and how they are intimately tied to the maternal bond.
- Full Text:
- Date Issued: 2016
A comparative physicochemical study of unsymmetrical indium phthalocyanines in the presence of magnetic nanoparticles or quantum dots
- Osifeko, Olawale L, Nyokong, Tebello
- Authors: Osifeko, Olawale L , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/188743 , vital:44781 , xlink:href="https://doi.org/10.1080/00958972.2016.1152628"
- Description: Asymmetric indium phthalocyanine (3, containing an NH2 group) was conjugated (via an amide bond) to magnetic nanoparticle (MNP) functionalized with carboxylic acid or glutathione-capped CdTe/ZnSe/ZnO quantum dots to form 3-MNPs or 3-QDs. Techniques such as time-resolved fluorescence measurements, transmission electron microscopy, XPS, elemental analysis, FTIR, NMR (1H, 13C, and cozy), electronic spectroscopy, as well as mass spectroscopy were employed to characterize 3 and its nanoconjugates. The phthalocyanine conjugated to quantum dot (3-QDs) possesses the lowest Фpd higher Ф∆ and ФT as well as longer triplet lifetimes compares to 3-MNPs and free phthalocyanine.
- Full Text:
- Date Issued: 2016
- Authors: Osifeko, Olawale L , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/188743 , vital:44781 , xlink:href="https://doi.org/10.1080/00958972.2016.1152628"
- Description: Asymmetric indium phthalocyanine (3, containing an NH2 group) was conjugated (via an amide bond) to magnetic nanoparticle (MNP) functionalized with carboxylic acid or glutathione-capped CdTe/ZnSe/ZnO quantum dots to form 3-MNPs or 3-QDs. Techniques such as time-resolved fluorescence measurements, transmission electron microscopy, XPS, elemental analysis, FTIR, NMR (1H, 13C, and cozy), electronic spectroscopy, as well as mass spectroscopy were employed to characterize 3 and its nanoconjugates. The phthalocyanine conjugated to quantum dot (3-QDs) possesses the lowest Фpd higher Ф∆ and ФT as well as longer triplet lifetimes compares to 3-MNPs and free phthalocyanine.
- Full Text:
- Date Issued: 2016
Effects of pluronic silica nanoparticles on the photophysical and photodynamic therapy behavior of triphenyl-p-phenoxy benzoic acid metalloporphyrins
- Managa, Muthumuni, Britton, Jonathan, Prinsloo, Earl, Nyokong, Tebello
- Authors: Managa, Muthumuni , Britton, Jonathan , Prinsloo, Earl , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239698 , vital:50756 , xlink:href="https://doi.org/10.1080/00958972.2016.1236372"
- Description: 5, 10, 15, Triphenyl-20-p-phenoxy benzoic acid porphyrins (P) containing Zn (ZnP), Ga (GaP), and Si (SiP) were synthesized and conjugated to pluronic-silica (PluS) nanoparticles (NPs) where the fluorescence and singlet oxygen generating behavior of the porphyrins were investigated. The highest singlet oxygen quantum yield (ΦΔ) was obtained for ZnP. When the porphyrins were conjugated to the PluS NPs, the ΦΔ was quenched and fluorescence was enhanced. The pore size of the NPs upon conjugation decreased from 18.9 nm for PluS NPs to 2.4 nm (for ZnP as an example) as determined by applying the Brunauer–Emmett–Teller method. The porphyrin complexes and their conjugates were tested for their photodynamic therapy (PDT) activity on MCF-7 breast cancer cells. It was found that ZnP and its conjugate showed the highest PDT activity. The p > 0.05 indicated that ZnP is significantly different than GaP and SiP.
- Full Text:
- Date Issued: 2016
- Authors: Managa, Muthumuni , Britton, Jonathan , Prinsloo, Earl , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239698 , vital:50756 , xlink:href="https://doi.org/10.1080/00958972.2016.1236372"
- Description: 5, 10, 15, Triphenyl-20-p-phenoxy benzoic acid porphyrins (P) containing Zn (ZnP), Ga (GaP), and Si (SiP) were synthesized and conjugated to pluronic-silica (PluS) nanoparticles (NPs) where the fluorescence and singlet oxygen generating behavior of the porphyrins were investigated. The highest singlet oxygen quantum yield (ΦΔ) was obtained for ZnP. When the porphyrins were conjugated to the PluS NPs, the ΦΔ was quenched and fluorescence was enhanced. The pore size of the NPs upon conjugation decreased from 18.9 nm for PluS NPs to 2.4 nm (for ZnP as an example) as determined by applying the Brunauer–Emmett–Teller method. The porphyrin complexes and their conjugates were tested for their photodynamic therapy (PDT) activity on MCF-7 breast cancer cells. It was found that ZnP and its conjugate showed the highest PDT activity. The p > 0.05 indicated that ZnP is significantly different than GaP and SiP.
- Full Text:
- Date Issued: 2016
Linking the ‘know-that’ and ‘know-how’ knowledge through games: a quest to evolve the future for science and engineering education
- Vahed, Anisa, McKenna, Sioux, Singh, S
- Authors: Vahed, Anisa , McKenna, Sioux , Singh, S
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66785 , vital:28993 , ISSN 1573-174X , https://doi.org/10.1007/s10734-015-9956-9
- Description: Publisher version , This paper responds to Muller’s notions of ‘knowing-that’ and ‘knowing how’. The paper addresses how educational interventions that are designed in line with targeted discipline-specific subjects can enhance the balance between professional practice and disciplinary knowledge in professionally accredited programmes at universities of technology. The context is a Dental Technology programme at a University of Technology in South Africa. Teaching through discipline-specific games, conceptualised from a game literacies perspective, is proposed as an engaging, interactive pedagogy for learning disciplinary knowledge that potentially encourages access to a particular affinity group. The authors use concepts from Bernstein and Maton to investigate whether epistemic relations or social relations are emphasised through board and digital games designed for two Dental Technology subjects. This paper offers valuable insight into alternative pedagogies that can be adopted into science, technology, engineering, and mathematics education with the aim of paving a pathway towards Muller’s Scenario 3.
- Full Text: false
- Date Issued: 2016
- Authors: Vahed, Anisa , McKenna, Sioux , Singh, S
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66785 , vital:28993 , ISSN 1573-174X , https://doi.org/10.1007/s10734-015-9956-9
- Description: Publisher version , This paper responds to Muller’s notions of ‘knowing-that’ and ‘knowing how’. The paper addresses how educational interventions that are designed in line with targeted discipline-specific subjects can enhance the balance between professional practice and disciplinary knowledge in professionally accredited programmes at universities of technology. The context is a Dental Technology programme at a University of Technology in South Africa. Teaching through discipline-specific games, conceptualised from a game literacies perspective, is proposed as an engaging, interactive pedagogy for learning disciplinary knowledge that potentially encourages access to a particular affinity group. The authors use concepts from Bernstein and Maton to investigate whether epistemic relations or social relations are emphasised through board and digital games designed for two Dental Technology subjects. This paper offers valuable insight into alternative pedagogies that can be adopted into science, technology, engineering, and mathematics education with the aim of paving a pathway towards Muller’s Scenario 3.
- Full Text: false
- Date Issued: 2016
“A Step Towards Silence”: Samuel Beckett’s The Unnamable and the Problem of Following the Stranger
- Authors: Marais, Mike
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144205 , vital:38320 , DOI: 10.1080/02564718.2016.1249617
- Description: In this article, I argue that Samuel Beckett’s The Unnamable evinces the kind of aesthetic ambivalence that Theodor Adorno, in Aesthetic Theory, ascribes to the artwork’s location both in and outside of society. By tracing the metaphors used in the narrator’s depiction of the act of narration, I demonstrate that this novel self-reflexively articulates and meditates on its ambivalent position in society. Thereafter, I relate the work’s suspicion of its medium, and therefore its estrangement from itself, to its critique of community’s norms of recognition, which are embedded in language. Finally, I reflect on the potential effect of the text’s aesthetic ambivalence on the reader.
- Full Text:
- Date Issued: 2016
- Authors: Marais, Mike
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144205 , vital:38320 , DOI: 10.1080/02564718.2016.1249617
- Description: In this article, I argue that Samuel Beckett’s The Unnamable evinces the kind of aesthetic ambivalence that Theodor Adorno, in Aesthetic Theory, ascribes to the artwork’s location both in and outside of society. By tracing the metaphors used in the narrator’s depiction of the act of narration, I demonstrate that this novel self-reflexively articulates and meditates on its ambivalent position in society. Thereafter, I relate the work’s suspicion of its medium, and therefore its estrangement from itself, to its critique of community’s norms of recognition, which are embedded in language. Finally, I reflect on the potential effect of the text’s aesthetic ambivalence on the reader.
- Full Text:
- Date Issued: 2016