Understanding the relationship between mangrove composition, stand dynamics and resource use in the Ntafufu estuary, Eastern Cape, as basis for sustainable resource use
- Mvakade, Monica, Rajkaran, Anusha
- Authors: Mvakade, Monica , Rajkaran, Anusha
- Date: 2020
- Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Aquatic ecology , Marine sciences , Fresh water
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49215 , vital:41611
- Description: Traditionally, coastal communities along the Wild Coast in the Eastern Cape, used mangrove forests for their livelihoods and socio-economic needs. Mangroves along the Eastern Cape coast are threatened by both natural and human factors. The wood obtained from the mangroves by rural households was used as poles for house and fence construction, firewood, and traditional medicine. This is a threat to the status of several mangrove species in this and surrounding areas. The harvesting of mangrove trees will have a direct and indirect effect on the other biotic and abiotic components of the mangrove ecosystems. The Department of Agriculture, Forestry and Fisheries (DAFF) (currently the Department of Environment, Forestry and Fisheries, or DEFF), through the National Forest Act no 84 of 1998, was directly responsible for the wellbeing of the national forests in South Africa. This also includes the mangroves as a specific national forest type. Several estuaries with mangroves occur within state forests. The harvesting and clear-felling of trees for timber and land conversion and associated waste of harvested mangrove poles and laths causes the many changes in mangrove forests. The aim of this study was to develop a framework for sustainable management of the mangroves for the Mtambalala forest management unit. This was done in relation to the requirements of the current legislation, policy guidelines and business plan of the management authority. The aim was pursued through two specific objectives. The first objective was to understand the variation in the composition in different parts of the Ntafufu Estuary, and the population dynamics of the main mangrove species, as basis for the development of sustainable resource use practices. Plots along transects were used to measure seedling to adult ratios, population structure and abiotic characteristics. The second objective was to understand the community use and requirements of mangrove wood from the Ntafufu Estuary. A participatory approach was followed to collect demographic data from each community, the requirements of mangrove poles and behaviour of harvesters. This was used to set up a framework to guide the sustainable management of mangroves based on the current status and stand dynamics of the mangrove communities. There are three mangrove species found in the Ntafufu Estuary: Bruguiera gymnorhiza (black mangrove) regenerates under the mangrove canopy and forms layers of even-aged stands. Avicennia marina (white mangrove) does not regenerate under a mangrove canopy i.e. the seedlings establish outside the canopy. A few Rhizophora mucronata (red mangrove) trees exist in the lower intertidal zone and form multiple stems on stilt roots. The mangrove associate, Hibiscus tiliaceus (wild cotton tree- mangrove associate), forms dense clusters of scrambling stems. Some of the Avicennia individuals show signs of mangrove bleeding and one individual of Bruguiera showed indications of disease. Mngazana and Ntafufu Estuaries had the highest tree densities of 2594 and 1402 trees ha-1 respectively, typical of riverine mangrove forest. The seedling to adult ratio was high in this study: 12.8 for B. gymnorrhiza and 24.3 for A. marina. Abandoned cut stems and laths were found during the study. Bark harvested for traditional medicine and cattle feeding in mangroves was also prevalent and expected to reduce the health of the forest. Mangroves in the Ntafufu Estuary are expanding, and the population structure of the three mangrove species showed a healthy balance between young and mature stems. The harvesting of Black mangrove (B. gymnorrhiza) poles for mainly roof construction is relatively limited. As part of the functions of the DAFF, the use of the mangrove resources has to be balanced with the resource availability from the mangroves, and this should result in a healthy functioning mangrove forest. Development of a participatory forest management (PFM) plan for a forest estate and its forest management unit, require an understanding of the mangrove communities and their dynamics, and the current level of resource use associated with the mangroves. The study recommended that a Mangrove Pole Harvesters Group is needed to practice silviculture through guidance of relevant governmental personnel.
- Full Text:
- Date Issued: 2020
- Authors: Mvakade, Monica , Rajkaran, Anusha
- Date: 2020
- Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Aquatic ecology , Marine sciences , Fresh water
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49215 , vital:41611
- Description: Traditionally, coastal communities along the Wild Coast in the Eastern Cape, used mangrove forests for their livelihoods and socio-economic needs. Mangroves along the Eastern Cape coast are threatened by both natural and human factors. The wood obtained from the mangroves by rural households was used as poles for house and fence construction, firewood, and traditional medicine. This is a threat to the status of several mangrove species in this and surrounding areas. The harvesting of mangrove trees will have a direct and indirect effect on the other biotic and abiotic components of the mangrove ecosystems. The Department of Agriculture, Forestry and Fisheries (DAFF) (currently the Department of Environment, Forestry and Fisheries, or DEFF), through the National Forest Act no 84 of 1998, was directly responsible for the wellbeing of the national forests in South Africa. This also includes the mangroves as a specific national forest type. Several estuaries with mangroves occur within state forests. The harvesting and clear-felling of trees for timber and land conversion and associated waste of harvested mangrove poles and laths causes the many changes in mangrove forests. The aim of this study was to develop a framework for sustainable management of the mangroves for the Mtambalala forest management unit. This was done in relation to the requirements of the current legislation, policy guidelines and business plan of the management authority. The aim was pursued through two specific objectives. The first objective was to understand the variation in the composition in different parts of the Ntafufu Estuary, and the population dynamics of the main mangrove species, as basis for the development of sustainable resource use practices. Plots along transects were used to measure seedling to adult ratios, population structure and abiotic characteristics. The second objective was to understand the community use and requirements of mangrove wood from the Ntafufu Estuary. A participatory approach was followed to collect demographic data from each community, the requirements of mangrove poles and behaviour of harvesters. This was used to set up a framework to guide the sustainable management of mangroves based on the current status and stand dynamics of the mangrove communities. There are three mangrove species found in the Ntafufu Estuary: Bruguiera gymnorhiza (black mangrove) regenerates under the mangrove canopy and forms layers of even-aged stands. Avicennia marina (white mangrove) does not regenerate under a mangrove canopy i.e. the seedlings establish outside the canopy. A few Rhizophora mucronata (red mangrove) trees exist in the lower intertidal zone and form multiple stems on stilt roots. The mangrove associate, Hibiscus tiliaceus (wild cotton tree- mangrove associate), forms dense clusters of scrambling stems. Some of the Avicennia individuals show signs of mangrove bleeding and one individual of Bruguiera showed indications of disease. Mngazana and Ntafufu Estuaries had the highest tree densities of 2594 and 1402 trees ha-1 respectively, typical of riverine mangrove forest. The seedling to adult ratio was high in this study: 12.8 for B. gymnorrhiza and 24.3 for A. marina. Abandoned cut stems and laths were found during the study. Bark harvested for traditional medicine and cattle feeding in mangroves was also prevalent and expected to reduce the health of the forest. Mangroves in the Ntafufu Estuary are expanding, and the population structure of the three mangrove species showed a healthy balance between young and mature stems. The harvesting of Black mangrove (B. gymnorrhiza) poles for mainly roof construction is relatively limited. As part of the functions of the DAFF, the use of the mangrove resources has to be balanced with the resource availability from the mangroves, and this should result in a healthy functioning mangrove forest. Development of a participatory forest management (PFM) plan for a forest estate and its forest management unit, require an understanding of the mangrove communities and their dynamics, and the current level of resource use associated with the mangroves. The study recommended that a Mangrove Pole Harvesters Group is needed to practice silviculture through guidance of relevant governmental personnel.
- Full Text:
- Date Issued: 2020
Upwelling on the Southeast Madagascan shelf: frequency, extent, and driving mechanisms
- Authors: Collins, Matthew
- Date: 2020
- Subjects: Upwelling (Oceanography) -- Madagascar , Oceanography -- Research -- Madagascar Marine biology -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49060 , vital:41597
- Description: The southeast coast of Madagascar, namely the region surrounding the town of Fort Dauphin, is an area that regularly experiences upwelling events. Two unique high frequency data sets, UTR data, and wind data retrieved from a nearby airport, are the primary data sets used to investigate the nature of the upwelling, i.e. the area that experiences upwelling, how often it occurs, and its mechanisms. To complement the in-situ data, several different satellite data sources are used alongside the in-situ data to study this relatively remote region, i.e. SST, chlorophyll-a concentration, current, and wind data. The results refine upon previous literature on the topic. The upwelling covers an area of 1o latitude by 1.3o longitude, and occurs on average 14 times per annum. The mechanism driving the upwelling can be attributed to both wind and current, with wind the more dominant driver along the south coast, and current more dominant along the east coast. Separate to the main objective of the thesis is the importance of in-situ data when analysing small scale events such as upwelling events. While the in-situ wind data were found to be unreliable due to its location within a valley, the UTR data were of vital importance in identifying and studying the finer details of the upwelling events. The satellite SST data, by comparison, were lacking in their ability to investigate the upwelling events. The satellite derived wind data, however, did prove useful when analysing the wind as a driver of the upwelling.
- Full Text:
- Date Issued: 2020
- Authors: Collins, Matthew
- Date: 2020
- Subjects: Upwelling (Oceanography) -- Madagascar , Oceanography -- Research -- Madagascar Marine biology -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49060 , vital:41597
- Description: The southeast coast of Madagascar, namely the region surrounding the town of Fort Dauphin, is an area that regularly experiences upwelling events. Two unique high frequency data sets, UTR data, and wind data retrieved from a nearby airport, are the primary data sets used to investigate the nature of the upwelling, i.e. the area that experiences upwelling, how often it occurs, and its mechanisms. To complement the in-situ data, several different satellite data sources are used alongside the in-situ data to study this relatively remote region, i.e. SST, chlorophyll-a concentration, current, and wind data. The results refine upon previous literature on the topic. The upwelling covers an area of 1o latitude by 1.3o longitude, and occurs on average 14 times per annum. The mechanism driving the upwelling can be attributed to both wind and current, with wind the more dominant driver along the south coast, and current more dominant along the east coast. Separate to the main objective of the thesis is the importance of in-situ data when analysing small scale events such as upwelling events. While the in-situ wind data were found to be unreliable due to its location within a valley, the UTR data were of vital importance in identifying and studying the finer details of the upwelling events. The satellite SST data, by comparison, were lacking in their ability to investigate the upwelling events. The satellite derived wind data, however, did prove useful when analysing the wind as a driver of the upwelling.
- Full Text:
- Date Issued: 2020
Using sound localization to gain depth perception for the visually impaired through sensory substitution
- Authors: De Klerk, James Carmichael
- Date: 2020
- Subjects: People with visual disabilities Directional hearing--Physiological aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/50779 , vital:42674
- Description: The visually impaired do not have the visual ability to localize objects in three-dimensional space, rather, they rely on their other senses to gain depth perception. Sensory substitution is the concept of substituting one sense for another, normally substituting an impaired sense with a functioning sense. Visual-to-auditory sensory substitution substitutes an impaired visual sense with a functioning auditory sense. This research aimed to investigate and develop techniques for visualto-auditory sensory substitution – using sound localization as a sensory substitution for depth perception. The research started by investigating the characteristics of human audition with a particular focus on how humans localize sounds. It then looked at existing visual-to-auditory sensory substitution systems and the techniques they used. From the existing systems, a system known as MeloSee was chosen as a baseline for developing and evaluating further sensory substitution prototypes. The baseline prototype (𝑃0) was then implemented and a preliminary study performed. Based on the knowledge gained from the preliminary study, baseline implementation and the background research, a set of improvement recommendations were generated. The next iteration – Prototype 1 (𝑃1) – was then developed based on the recommendations. A comparative study between 𝑃0 and 𝑃1 was then performed. Based on the study, another set of improvement recommendations were generated. From the recommendations, a final prototype was developed – Prototype 2 (𝑃2). The last comparative study was then performed between 𝑃0 and 𝑃2, with a third set of recommendations being generated as a result. From the studies it was found that participants using 𝑃0 were able to identify when they were approaching large objects such as walls. 𝑃1 built on that, improving the ability to identify the quadrant of a nearby isolated object. 𝑃2 built on 𝑃0 and 𝑃1, achieving similar results to 𝑃1 for identifying the quadrant of nearby isolated objects, and improving on 𝑃0 and 𝑃1 with regard to depth discrimination – especially for navigation tasks where there were no obstacles. Based on the three sets of recommendations and what was learnt over the course of the research, a set of visual-to-auditory sensory substitution techniques were presented. The techniques aim to be useful for implementing visual-to-auditory sensory substitution systems, which would provide the visually impaired with the visual ability to localize objects in three-dimensional space through sound.
- Full Text:
- Date Issued: 2020
- Authors: De Klerk, James Carmichael
- Date: 2020
- Subjects: People with visual disabilities Directional hearing--Physiological aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/50779 , vital:42674
- Description: The visually impaired do not have the visual ability to localize objects in three-dimensional space, rather, they rely on their other senses to gain depth perception. Sensory substitution is the concept of substituting one sense for another, normally substituting an impaired sense with a functioning sense. Visual-to-auditory sensory substitution substitutes an impaired visual sense with a functioning auditory sense. This research aimed to investigate and develop techniques for visualto-auditory sensory substitution – using sound localization as a sensory substitution for depth perception. The research started by investigating the characteristics of human audition with a particular focus on how humans localize sounds. It then looked at existing visual-to-auditory sensory substitution systems and the techniques they used. From the existing systems, a system known as MeloSee was chosen as a baseline for developing and evaluating further sensory substitution prototypes. The baseline prototype (𝑃0) was then implemented and a preliminary study performed. Based on the knowledge gained from the preliminary study, baseline implementation and the background research, a set of improvement recommendations were generated. The next iteration – Prototype 1 (𝑃1) – was then developed based on the recommendations. A comparative study between 𝑃0 and 𝑃1 was then performed. Based on the study, another set of improvement recommendations were generated. From the recommendations, a final prototype was developed – Prototype 2 (𝑃2). The last comparative study was then performed between 𝑃0 and 𝑃2, with a third set of recommendations being generated as a result. From the studies it was found that participants using 𝑃0 were able to identify when they were approaching large objects such as walls. 𝑃1 built on that, improving the ability to identify the quadrant of a nearby isolated object. 𝑃2 built on 𝑃0 and 𝑃1, achieving similar results to 𝑃1 for identifying the quadrant of nearby isolated objects, and improving on 𝑃0 and 𝑃1 with regard to depth discrimination – especially for navigation tasks where there were no obstacles. Based on the three sets of recommendations and what was learnt over the course of the research, a set of visual-to-auditory sensory substitution techniques were presented. The techniques aim to be useful for implementing visual-to-auditory sensory substitution systems, which would provide the visually impaired with the visual ability to localize objects in three-dimensional space through sound.
- Full Text:
- Date Issued: 2020
Water balance processes in indigenous and introduced spaces three production system in the Southern Cape region of South Africa
- Authors: Mapeto, Tatenda
- Date: 2020
- Subjects: Hydrology -- Research -- South Africa , Groundwater -- Research -- South Africa Trees -- Breeding Sustainable forestry
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/49325 , vital:41621
- Description: Forests and trees are important modulators of water flow and their position in the landscape impacts the spatial and temporal availability of ground water and surface water resources. As such, the global extent of natural forests is linked to the availability of water. In the circumstances where tree production systems have been introduced and are managed in landscapes previously populated with other forms of vegetation, it is necessary to understand their hydrological impact so as to ensure that the benefits derived from these tree systems do not outweigh the costs of water availability for sustaining human and environmental water requirements.
- Full Text: false
- Date Issued: 2020
- Authors: Mapeto, Tatenda
- Date: 2020
- Subjects: Hydrology -- Research -- South Africa , Groundwater -- Research -- South Africa Trees -- Breeding Sustainable forestry
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/49325 , vital:41621
- Description: Forests and trees are important modulators of water flow and their position in the landscape impacts the spatial and temporal availability of ground water and surface water resources. As such, the global extent of natural forests is linked to the availability of water. In the circumstances where tree production systems have been introduced and are managed in landscapes previously populated with other forms of vegetation, it is necessary to understand their hydrological impact so as to ensure that the benefits derived from these tree systems do not outweigh the costs of water availability for sustaining human and environmental water requirements.
- Full Text: false
- Date Issued: 2020
Wind damage impacts on Eucalyptus species performance in South Africa
- Authors: Hechter, Heinrich
- Date: 2020
- Subjects: Commercial forests -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48368 , vital:40853
- Description: Commercial forestry plantations in South Africa play an important role in the economy of the country, contributing 1.2% towards the gross domestic product, as well as with job creation in rural communities. Currently plantation forests cover 1% (1.2 million hectares) of the South African land surface, of which ±75 000 hectares (±43 000 hectares to Eucalyptus species) are re-established each year. Different timber companies afforest areas with different species to satisfy specific management objectives, with the two main objectives being for either the production of saw-timber or pulpwood. Species of the Eucalyptus genera are preferred as they are fast growing and have desirable wood and pulping properties. However, their productive potential can be negatively impacted by numerous abiotic and biotic risk factors. Of the various risk factors that forest stands are exposed to, wind and wind-related tree damage has received very little attention, both nationally and internationally. Wind-related tree damage may result in wind-throw (uprooting or stem breakage), or trees that tilt (lean off vertical). Trees that are tilting can recover to an upright position, but are likely to retain some level of stem sinuosity or butt-sweep. Although strong winds increase the risk of tree damage, a number of other factors can also act to predispose trees to wind-related damage. These include choice of planting stock (genotype and type of plant stock), planting practices (including soil cultivation), site factors (wind exposure, rainfall, soil texture and soil fertility) or excessive weed competition. Most of the literature dealing with wind-related tree damage has focused on trees growing in natural forests, whereas trees in natural forests differ from forest grown plantation trees in terms of above- and below-ground morphological differences, as well as the stability factors of the trees. There is a need to not only understand the impacts of severe (catastrophic) wind events on mature trees, but also to test management strategies that prevent, or minimize damage prior to any severe wind events. Two existing eucalypt trials were used to provide information on the influence of selected re-establishment silvicultural practices on short-term pulpwood and long-term saw-timber survival, growth and uniformity when influenced by catastrophic wind events, within South Africa.
- Full Text:
- Date Issued: 2020
- Authors: Hechter, Heinrich
- Date: 2020
- Subjects: Commercial forests -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48368 , vital:40853
- Description: Commercial forestry plantations in South Africa play an important role in the economy of the country, contributing 1.2% towards the gross domestic product, as well as with job creation in rural communities. Currently plantation forests cover 1% (1.2 million hectares) of the South African land surface, of which ±75 000 hectares (±43 000 hectares to Eucalyptus species) are re-established each year. Different timber companies afforest areas with different species to satisfy specific management objectives, with the two main objectives being for either the production of saw-timber or pulpwood. Species of the Eucalyptus genera are preferred as they are fast growing and have desirable wood and pulping properties. However, their productive potential can be negatively impacted by numerous abiotic and biotic risk factors. Of the various risk factors that forest stands are exposed to, wind and wind-related tree damage has received very little attention, both nationally and internationally. Wind-related tree damage may result in wind-throw (uprooting or stem breakage), or trees that tilt (lean off vertical). Trees that are tilting can recover to an upright position, but are likely to retain some level of stem sinuosity or butt-sweep. Although strong winds increase the risk of tree damage, a number of other factors can also act to predispose trees to wind-related damage. These include choice of planting stock (genotype and type of plant stock), planting practices (including soil cultivation), site factors (wind exposure, rainfall, soil texture and soil fertility) or excessive weed competition. Most of the literature dealing with wind-related tree damage has focused on trees growing in natural forests, whereas trees in natural forests differ from forest grown plantation trees in terms of above- and below-ground morphological differences, as well as the stability factors of the trees. There is a need to not only understand the impacts of severe (catastrophic) wind events on mature trees, but also to test management strategies that prevent, or minimize damage prior to any severe wind events. Two existing eucalypt trials were used to provide information on the influence of selected re-establishment silvicultural practices on short-term pulpwood and long-term saw-timber survival, growth and uniformity when influenced by catastrophic wind events, within South Africa.
- Full Text:
- Date Issued: 2020
Probing the binding sites of novel 2-substituted imidazole-4,5-dicarboxylic acids : Towards new imidazole-based drugs
- Authors: Clark, Candyce Raine
- Date: 2021
- Subjects: Heterocyclic compounds Coordination compounds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/50848 , vital:42957
- Description: A series of benzimidazole and imidazole-4,5-dicarboxylic acids were prepared using known and adapted protocols. Novel ligands synthesised in this study include 2-tert-butyl-benzimidazole, 2-tert-butyl-imidazole-4,5-dicarboxylic acid, an intermediate in the synthesis of 1,2- bis(2-benzimidazyl)-1,2,-dihydroxyethane and 2-(2-hydroxyphenyl)-benzimidazole with a salicylic acid co-crystallisate. All ligands prepared were reacted with metal salt solutions in order to prepare metal coordination compounds. Complexes with Cu(II), Ag(I), Mn(II), Ni(II) and Cd(II) ions and 2-phenyl-imidazole-4,5-dicarboxylic acid were prepared, as well as Cu(II) and Mn(II) with 2-trifluoro-methyl-imidazole-4,5-dicarboxylic acid and Cu(II) ions with 2-(2- hydroxyphenyl)-benzimidazole. The ligands and complexes were characterised by means of single-crystal X-ray diffraction studies, NMR analysis, UV spectrophotometric analysis and IR spectroscopy. DFT studies were carried out for selected ligands in order to provide theoretical values for comparison. Antimicrobial studies were performed on some of the ligands and complexes and these results show promise for the future development of new imidazole-based drugs.
- Full Text:
- Date Issued: 2021
- Authors: Clark, Candyce Raine
- Date: 2021
- Subjects: Heterocyclic compounds Coordination compounds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/50848 , vital:42957
- Description: A series of benzimidazole and imidazole-4,5-dicarboxylic acids were prepared using known and adapted protocols. Novel ligands synthesised in this study include 2-tert-butyl-benzimidazole, 2-tert-butyl-imidazole-4,5-dicarboxylic acid, an intermediate in the synthesis of 1,2- bis(2-benzimidazyl)-1,2,-dihydroxyethane and 2-(2-hydroxyphenyl)-benzimidazole with a salicylic acid co-crystallisate. All ligands prepared were reacted with metal salt solutions in order to prepare metal coordination compounds. Complexes with Cu(II), Ag(I), Mn(II), Ni(II) and Cd(II) ions and 2-phenyl-imidazole-4,5-dicarboxylic acid were prepared, as well as Cu(II) and Mn(II) with 2-trifluoro-methyl-imidazole-4,5-dicarboxylic acid and Cu(II) ions with 2-(2- hydroxyphenyl)-benzimidazole. The ligands and complexes were characterised by means of single-crystal X-ray diffraction studies, NMR analysis, UV spectrophotometric analysis and IR spectroscopy. DFT studies were carried out for selected ligands in order to provide theoretical values for comparison. Antimicrobial studies were performed on some of the ligands and complexes and these results show promise for the future development of new imidazole-based drugs.
- Full Text:
- Date Issued: 2021
A Functional Data Analysis approach to understand patterns imbedded within various data types
- Authors: Mangisa, Siphumlile
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Data mining
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/52091 , vital:43426
- Description: The thesis investigates the use of the novel Functional Data Analysis (FDA) methods in tackling various data types. Strong motivation is provided for the use of interesting opportunities offered by FDA to analyse not only economic data, but generally, data from any domain. The use of these methods is illustrated using three unique self-contained case-studies from econometrics. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Mangisa, Siphumlile
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Data mining
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/52091 , vital:43426
- Description: The thesis investigates the use of the novel Functional Data Analysis (FDA) methods in tackling various data types. Strong motivation is provided for the use of interesting opportunities offered by FDA to analyse not only economic data, but generally, data from any domain. The use of these methods is illustrated using three unique self-contained case-studies from econometrics. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Date Issued: 2021-04
A study of the airflow on the windward slope of a transverse dune in the Alexandria coastal dunefield
- Authors: Burkinshaw, Jennifer Ruth
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52734 , vital:43883
- Description: Our understanding of the evolution of dune morphology has been hampered by a lack of empirical observations of airflow behaviour over dune forms. Sand dunes intrude into the atmospheric boundary layer and convergence of streamlines results in an acceleration of airflow up the windward slopes of dunes. This study examines the airflow structure and corresponding bedform development on the windward slope of a 7 m high transverse dune on the edge of the Alexandria coastal dunefield, Algoa Bay, South Africa. The Alexandria dunefield is subjected to a trimodal wind regime, consisting of the dominant south-westerly which blows all year round, summer easterlies and winter northwesterlies. The morphology of the study dune, Dune13, is controlled by the easterlies and north-westerlies, and reverses seasonally with respect to these two winds. Seven section lines 30 m apart and normal to the dune crest were surveyed regularly over the period of a year to monitor the reversal process. Three detailed topographic surveys were also done during this period. Airflow behaviour was monitored during the year. Wind speed profiles on the windward slope of the dune were measured using 4 to 5 vertical arrays of anemometers positioned from the base of the dune to the crest on a 1 selected section line. Usually 4 to 5 anemometers were deployed in each vertical array, from a height of 6 to 10 cm above the surface, up to a height of 150 cm above the surface. Initially 8 microanemometers were available; ultimately 28 anemometers were run simultaneously. An independent weather station at an elevation of 6 m recorded the unaccelerated flow. Local gradient measurements and erosion and deposition rates were recorded along selected section lines. Strong summer easterly winds (14 m/sec at 1.4 m above the dune crest) were measured on a dune slope in the process of being transformed from a slipface to a stoss slope. The following winter, light north-westerly winds (typically B m/sec at 1.6 m above the dune crest) were measured on the new windward slope already reversed by the prevailing winter wind. Airflow data confirm the compression of airflow against the windward slope resulting in a non-logarithmic wind speed profile. Compression results in an increased shear velocity within 30 cm of the dune surface, and the dune slope is eroded. Higher up in the wind speed profile, shear velocity decreases to 0.1 m/sec. It is not known at what height the wind speed profile recovers from the intrusion of the dune into the boundary layer. High values of shear velocity (1.6 m/sec) above the rounded crestal area of the dune record the recovery of the wind speed profile from flow divergence, which is a response to the rapid reduction of dune gradient and is accompanied by deposition of sand in this region. 2 The erosion pin data act as a simple and sensitive test for changes in gradient, reflecting the dune's response to changes in the airflow regime. The shape of the dune plays a major role in determining the extent of the compression and the distribution of shear velocity up the slope. Increased shear velocity is experienced on that part of the slope which is nonaerodynamic with respect to the prevailing wind. Under unidirectional conditions, feedback between flow and form results ultimately in a slope with a curvature such that shear velocity increases systematically upslope. The survey data and erosion pin data record the reversal process as the dune achieves a new steady state during each wind season. The existence of a non-logarithmic wind speed profile makes it difficult to know what relevant measure of shear velocity is to be used in sand transport equations. Future work should include wind speed measurements within 10 cm of the surface. An ideal study modelling aeolian bedform development would utilise wind tunnel measurements, combined with field measurements such as obtained in this study, for comparison with numerical modelling. The study needs to be extended to 3-dimensional airflow measurements. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Burkinshaw, Jennifer Ruth
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52734 , vital:43883
- Description: Our understanding of the evolution of dune morphology has been hampered by a lack of empirical observations of airflow behaviour over dune forms. Sand dunes intrude into the atmospheric boundary layer and convergence of streamlines results in an acceleration of airflow up the windward slopes of dunes. This study examines the airflow structure and corresponding bedform development on the windward slope of a 7 m high transverse dune on the edge of the Alexandria coastal dunefield, Algoa Bay, South Africa. The Alexandria dunefield is subjected to a trimodal wind regime, consisting of the dominant south-westerly which blows all year round, summer easterlies and winter northwesterlies. The morphology of the study dune, Dune13, is controlled by the easterlies and north-westerlies, and reverses seasonally with respect to these two winds. Seven section lines 30 m apart and normal to the dune crest were surveyed regularly over the period of a year to monitor the reversal process. Three detailed topographic surveys were also done during this period. Airflow behaviour was monitored during the year. Wind speed profiles on the windward slope of the dune were measured using 4 to 5 vertical arrays of anemometers positioned from the base of the dune to the crest on a 1 selected section line. Usually 4 to 5 anemometers were deployed in each vertical array, from a height of 6 to 10 cm above the surface, up to a height of 150 cm above the surface. Initially 8 microanemometers were available; ultimately 28 anemometers were run simultaneously. An independent weather station at an elevation of 6 m recorded the unaccelerated flow. Local gradient measurements and erosion and deposition rates were recorded along selected section lines. Strong summer easterly winds (14 m/sec at 1.4 m above the dune crest) were measured on a dune slope in the process of being transformed from a slipface to a stoss slope. The following winter, light north-westerly winds (typically B m/sec at 1.6 m above the dune crest) were measured on the new windward slope already reversed by the prevailing winter wind. Airflow data confirm the compression of airflow against the windward slope resulting in a non-logarithmic wind speed profile. Compression results in an increased shear velocity within 30 cm of the dune surface, and the dune slope is eroded. Higher up in the wind speed profile, shear velocity decreases to 0.1 m/sec. It is not known at what height the wind speed profile recovers from the intrusion of the dune into the boundary layer. High values of shear velocity (1.6 m/sec) above the rounded crestal area of the dune record the recovery of the wind speed profile from flow divergence, which is a response to the rapid reduction of dune gradient and is accompanied by deposition of sand in this region. 2 The erosion pin data act as a simple and sensitive test for changes in gradient, reflecting the dune's response to changes in the airflow regime. The shape of the dune plays a major role in determining the extent of the compression and the distribution of shear velocity up the slope. Increased shear velocity is experienced on that part of the slope which is nonaerodynamic with respect to the prevailing wind. Under unidirectional conditions, feedback between flow and form results ultimately in a slope with a curvature such that shear velocity increases systematically upslope. The survey data and erosion pin data record the reversal process as the dune achieves a new steady state during each wind season. The existence of a non-logarithmic wind speed profile makes it difficult to know what relevant measure of shear velocity is to be used in sand transport equations. Future work should include wind speed measurements within 10 cm of the surface. An ideal study modelling aeolian bedform development would utilise wind tunnel measurements, combined with field measurements such as obtained in this study, for comparison with numerical modelling. The study needs to be extended to 3-dimensional airflow measurements. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text:
- Date Issued: 2021-04
A theoretical study of alkoxyl radical and radical cation mediated cyclisation reactions in unsaturated alkanols
- Authors: Lee, Peter Mattison Clarke
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Density functionals
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/52130 , vital:43430
- Description: A large part of this computational study focussed on selectivity patterns for 4-penten- 1-oxyl radical 1,5- and 1,6-cyclisations and for those of analogous 5-hexenyl, 4- penten-1-aminyl, 4-penten-1-iminyl and 3-phenylpropan-1-oxyl radicals. The study furthermore included cyclisation reactions of the radical cations of 4-penten-1-ol and 3-phenylpropan-1-ol. Calculations were performed for all applicable species involved in the two cyclisation modes studied, i.e. 1,5- and 1,6-cyclisation. These species included radical and radical cation precursors, as well as relevant radical transition state structures and radical adducts. All cyclisation systems investigated used the Density Functional Theory (DFT) functional B3LYP with a combination of eight basis sets. Each basis set used was a progressively higher level of theory than B3LYP/6-31G* which was used as a starting point. Cyclisations for unsubstituted species, e.g. the 4-penten-1-oxyl radical 1,5- and 1,6-cyclisations, were also simulated using the ωB97X-D and ωB97X-V functionals which account for dispersive effects. The same set of eight basis sets were used with these two functionals. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Lee, Peter Mattison Clarke
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Density functionals
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/52130 , vital:43430
- Description: A large part of this computational study focussed on selectivity patterns for 4-penten- 1-oxyl radical 1,5- and 1,6-cyclisations and for those of analogous 5-hexenyl, 4- penten-1-aminyl, 4-penten-1-iminyl and 3-phenylpropan-1-oxyl radicals. The study furthermore included cyclisation reactions of the radical cations of 4-penten-1-ol and 3-phenylpropan-1-ol. Calculations were performed for all applicable species involved in the two cyclisation modes studied, i.e. 1,5- and 1,6-cyclisation. These species included radical and radical cation precursors, as well as relevant radical transition state structures and radical adducts. All cyclisation systems investigated used the Density Functional Theory (DFT) functional B3LYP with a combination of eight basis sets. Each basis set used was a progressively higher level of theory than B3LYP/6-31G* which was used as a starting point. Cyclisations for unsubstituted species, e.g. the 4-penten-1-oxyl radical 1,5- and 1,6-cyclisations, were also simulated using the ωB97X-D and ωB97X-V functionals which account for dispersive effects. The same set of eight basis sets were used with these two functionals. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Date Issued: 2021-04
An assessment of different methods for measuring mammal diversity in two Southern African arid ecosystems.
- Authors: Burt, Chloe
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Biodiversity -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52338 , vital:43591
- Description: A current critical environmental problem is the loss of biodiversity. To allow for adaptive management and effective conservation interventions, reliable data needs to be readily available and effectively collected. To gather reliable data, the most appropriate method must be used. The aim of this thesis was to compare the effectiveness and efficiency of different mammal diversity sampling techniques, including discussing specificities and complementarity of each. I also assessed the limitation of methods in terms of the influence of species traits on detectability. I used standard mammal field methods such as block transects, camera traps, track plates, spotlight surveys, mist nets, acoustic surveys, and live traps for a wide range of mammal taxa, and also included the use of local knowledge in the comparison. I assessed the cost-efficiency of each method by determining the cost per species. The efficiency of each method was assessed by observing when the species accumulation curve reached an asymptote. The effectiveness was determined by the species richness and the taxonomic groups the method detected. My results indicated that block transects were the most efficient and effective method to assess species richness. However, a combination of methods allowed for a more comprehensive survey and my results indicate that block transects and live traps were the best combination. It is important to note, not only the effectiveness and efficiency of methods be assessed, but also their limitations. I therefore also assessed the influence of species traits on the detectability of five methods. The species traits that I tested were body size, diet, activity, and if they lived in groups. On both study areas, body size was the main trait that influenced detectability with most field methods. Diet and activity had varying influence on detectability depending on the method. Group living did not significantly influence detectability. Based on my results, I provide guidelines for choosing the most appropriate survey method for targeted studies on mammals in arid ecosystems as well as guidelines for choosing the most appropriate methods for a terrestrial mammal inventory. Survey methods selection and guidelines provided here can allow for effective monitoring and therefore effective and adaptive management and having reliable and repeatable outcomes from surveys. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Burt, Chloe
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Biodiversity -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52338 , vital:43591
- Description: A current critical environmental problem is the loss of biodiversity. To allow for adaptive management and effective conservation interventions, reliable data needs to be readily available and effectively collected. To gather reliable data, the most appropriate method must be used. The aim of this thesis was to compare the effectiveness and efficiency of different mammal diversity sampling techniques, including discussing specificities and complementarity of each. I also assessed the limitation of methods in terms of the influence of species traits on detectability. I used standard mammal field methods such as block transects, camera traps, track plates, spotlight surveys, mist nets, acoustic surveys, and live traps for a wide range of mammal taxa, and also included the use of local knowledge in the comparison. I assessed the cost-efficiency of each method by determining the cost per species. The efficiency of each method was assessed by observing when the species accumulation curve reached an asymptote. The effectiveness was determined by the species richness and the taxonomic groups the method detected. My results indicated that block transects were the most efficient and effective method to assess species richness. However, a combination of methods allowed for a more comprehensive survey and my results indicate that block transects and live traps were the best combination. It is important to note, not only the effectiveness and efficiency of methods be assessed, but also their limitations. I therefore also assessed the influence of species traits on the detectability of five methods. The species traits that I tested were body size, diet, activity, and if they lived in groups. On both study areas, body size was the main trait that influenced detectability with most field methods. Diet and activity had varying influence on detectability depending on the method. Group living did not significantly influence detectability. Based on my results, I provide guidelines for choosing the most appropriate survey method for targeted studies on mammals in arid ecosystems as well as guidelines for choosing the most appropriate methods for a terrestrial mammal inventory. Survey methods selection and guidelines provided here can allow for effective monitoring and therefore effective and adaptive management and having reliable and repeatable outcomes from surveys. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
An investigation into the effects of nano-carbons on the negative electrode morphology of lead acid batteries under high rate partial state of capacity cycling
- Authors: Bolo, Lukanyo
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53324 , vital:45132
- Description: New technological developments in the field of Hybrid Electric Vehicles (HEV’s), vehicle stop-start applications and electrical power utility devices have brought about new demands on the use of energy storage devices such as the Pb-acid battery. These applications require a new understanding and research into the material chemistry of the battery where it has to functionin a Partial State of Capacity Cycling (PSoCC) or High Rate Partial State of Capacity Cycling (HRPSoCC)duty. The Pb-acid battery is well known for its use in the automotive industry where it had worked for decades as a typical Starter, Lighting and Ignition (SLI) power source. However, the conventional Pb-acid battery is not suitable for the new types of vehicle demands and applications. When the Pb-lead acid battery is subjected to PSoCC conditions, very quickly excessive amount of non-conducting PbSO4crystals are formed on the negative plates of the battery that then drastically reduce its useful life in application. Over the years, researchers have shown that the small addition of certain carbon types to the negative plate active material (NAM) during battery manufacturing can reduce the sulfation effect thereby increasing its use the modern vehicle applications. This study investigated industrial manufactured cells that contained up to 0.5 % by weight two types of carbons in the NAM. These were compared to standard built cells in terms of their standard achievable capacities at various rates, their Cold Cranking Ability (CCA), their Dynamic Charge Acceptance (DCA) and a simplified PSoCC test. The carbons were classified as an activated carbon and a carbon nano-fiber and were included as a dry weight additive during the standard paste manufacturing process of the negative plate. Cells were built with a 9-plate configuration using standard expanded grid positive plates with a nominal rated capacity of 36 Ah. The cells were formed and subjected to a number of electrochemical tests, of which selected negative plates were then studied using Scanning Electron Microscopy (SEM) and Electrochemical in-situ Atomic Force Microscopy (EC-AFM). The microscopic study was then used to try and relate the observed material characteristics of the NAM with the carbons to the electrochemical results observed when testing a built cell. , Thesis (MA) --Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Bolo, Lukanyo
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53324 , vital:45132
- Description: New technological developments in the field of Hybrid Electric Vehicles (HEV’s), vehicle stop-start applications and electrical power utility devices have brought about new demands on the use of energy storage devices such as the Pb-acid battery. These applications require a new understanding and research into the material chemistry of the battery where it has to functionin a Partial State of Capacity Cycling (PSoCC) or High Rate Partial State of Capacity Cycling (HRPSoCC)duty. The Pb-acid battery is well known for its use in the automotive industry where it had worked for decades as a typical Starter, Lighting and Ignition (SLI) power source. However, the conventional Pb-acid battery is not suitable for the new types of vehicle demands and applications. When the Pb-lead acid battery is subjected to PSoCC conditions, very quickly excessive amount of non-conducting PbSO4crystals are formed on the negative plates of the battery that then drastically reduce its useful life in application. Over the years, researchers have shown that the small addition of certain carbon types to the negative plate active material (NAM) during battery manufacturing can reduce the sulfation effect thereby increasing its use the modern vehicle applications. This study investigated industrial manufactured cells that contained up to 0.5 % by weight two types of carbons in the NAM. These were compared to standard built cells in terms of their standard achievable capacities at various rates, their Cold Cranking Ability (CCA), their Dynamic Charge Acceptance (DCA) and a simplified PSoCC test. The carbons were classified as an activated carbon and a carbon nano-fiber and were included as a dry weight additive during the standard paste manufacturing process of the negative plate. Cells were built with a 9-plate configuration using standard expanded grid positive plates with a nominal rated capacity of 36 Ah. The cells were formed and subjected to a number of electrochemical tests, of which selected negative plates were then studied using Scanning Electron Microscopy (SEM) and Electrochemical in-situ Atomic Force Microscopy (EC-AFM). The microscopic study was then used to try and relate the observed material characteristics of the NAM with the carbons to the electrochemical results observed when testing a built cell. , Thesis (MA) --Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text:
- Date Issued: 2021-04
Antifungal activity of silver nanoparticles on Cryptococcus species
- Authors: Roman, Nasstasja
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Cryptococcus
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52089 , vital:43445
- Description: Cryptococcus neoformans is responsible for cryptococcal infections, which have become a great concern particularly in immunocompromised patients. This pulmonary disease causes damage to lung tissue and is presumed to be responsible for approximately 650,000 deaths annually. There is a major need for novel antimicrobial agents to avoid the emergence of resistant strains due to extended use of known antifungal drugs. Silver has become an important antimicrobial agent used in medical devices, cosmetics and even house-hold or clothing products. It is highly toxic and has a reduced risk of resistance. Silver nanoparticles have been broadly explored as an antimicrobial agent due to its high reactivity, large surface area and small size. They have been reported to display antimicrobial activity towards bacteria, viruses and fungi. C. neoformans is a pathogenic microorganism that possesses a number of virulence factors which increases the infectivity of the microorganism in immunocompromised individuals. Some of these include the presence of a polysaccharide capsule, melanin, urease and phospholipase production. Owing to limited availability of antifungal drugs and the possibility of drug resistance, this study focused on an alternative antimicrobial agent, namely silver nanoparticles, and the effects that silver nanoparticles had on fungal β-glucan, chitin and urease, phospholipase and melanin virulence factors. Results from our study show that silver nanoparticles inhibited the growth of C. neoformans at concentrations between 3.125 ƒM and 25 ƒM. Both 26.4 nm and 28.4 nm nanoparticles displayed growth inhibition, but were unable to kill the organism at concentrations of 200 ƒM and above. The silver nanoparticles caused a reduction in βglucan content. There was also an accumulation of intracellular ROS, and phospholipase activity, was reduced. In contrast, the organism displayed an increase in chitin content, melanin and urease activity upon exposure to the nanoparticles. This study shows that chemically synthesized silver nanoparticles are an effective antifungal alternative that greatly reduces or inhibits C. neoformans growth at very low concentrations (ƒM). For future studies it may be feasible to investigate the use of these nanoparticles in combination with known antifungal agents, to prevent the emergence of resistance and inhibit possible defense mechanisms displayed by the organism. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Roman, Nasstasja
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Cryptococcus
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52089 , vital:43445
- Description: Cryptococcus neoformans is responsible for cryptococcal infections, which have become a great concern particularly in immunocompromised patients. This pulmonary disease causes damage to lung tissue and is presumed to be responsible for approximately 650,000 deaths annually. There is a major need for novel antimicrobial agents to avoid the emergence of resistant strains due to extended use of known antifungal drugs. Silver has become an important antimicrobial agent used in medical devices, cosmetics and even house-hold or clothing products. It is highly toxic and has a reduced risk of resistance. Silver nanoparticles have been broadly explored as an antimicrobial agent due to its high reactivity, large surface area and small size. They have been reported to display antimicrobial activity towards bacteria, viruses and fungi. C. neoformans is a pathogenic microorganism that possesses a number of virulence factors which increases the infectivity of the microorganism in immunocompromised individuals. Some of these include the presence of a polysaccharide capsule, melanin, urease and phospholipase production. Owing to limited availability of antifungal drugs and the possibility of drug resistance, this study focused on an alternative antimicrobial agent, namely silver nanoparticles, and the effects that silver nanoparticles had on fungal β-glucan, chitin and urease, phospholipase and melanin virulence factors. Results from our study show that silver nanoparticles inhibited the growth of C. neoformans at concentrations between 3.125 ƒM and 25 ƒM. Both 26.4 nm and 28.4 nm nanoparticles displayed growth inhibition, but were unable to kill the organism at concentrations of 200 ƒM and above. The silver nanoparticles caused a reduction in βglucan content. There was also an accumulation of intracellular ROS, and phospholipase activity, was reduced. In contrast, the organism displayed an increase in chitin content, melanin and urease activity upon exposure to the nanoparticles. This study shows that chemically synthesized silver nanoparticles are an effective antifungal alternative that greatly reduces or inhibits C. neoformans growth at very low concentrations (ƒM). For future studies it may be feasible to investigate the use of these nanoparticles in combination with known antifungal agents, to prevent the emergence of resistance and inhibit possible defense mechanisms displayed by the organism. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
Antiproliferative activity of novel rhenium complexes and medicinal plant extracts
- Oosthuizen, Kenneth Thomas, Venables, Luanne
- Authors: Oosthuizen, Kenneth Thomas , Venables, Luanne
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Medicinal plants -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52028 , vital:43441
- Description: Cancer is a complex, multifactorial disease that affects millions of individuals every year. The adverse side effects and escalating costs of current therapies coupled with the increased incidence of resistance to these therapies make it imperative that we explore novel treatments for the disease. This study investigated two avenues for novel drug design namely, novel synthetic compounds and medicinal plant extracts. The benzimidazole ring system has shown potential as a scaffold for designing novel anticancer agents. Conjugation of the metal rhenium to novel variants of this ring system open up the possibility of designing novel drugs that serve both a diagnostic and a therapeutic function. This study investigated the in vitro anticancer potential of ten such complexes against selected breast and cervical cancer cell lines. The selectivity of the complexes for cancer cells over normal cells was also investigated while the mechanism of action of effective complexes was determined by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane disruption. All ten complexes were screened against MCF7 breast and HeLa cervical cancer cell lines with four showing antiproliferative activity against both cancer cell lines and one showing cell line specific toxicity against MCF7 breast cancer cells. When looking at the SAR of the compounds it was noted that activity was higher in compounds which contain two potentially bidentate benzothiazole ligands, while compounds with potentially tridentate ligands show good activity, but only if the benzothiazole moiety is not involved in coordination. The complexes showed greater antiproliferative activity against the MCF7 breast cancer cells with IC50 values ranging from 3.2 to 7.0 µM versus a range of 7.6 to 24.4 µM being obtained on the HeLa cervical cancer cells. Antiproliferative complexes were tested against confluent and log phase Vero cells at their respective IC50 values to determine their effect on “normal” cells. Confluent Vero cells showed less cell death than those in log phase indicating that the complexes show preference for proliferating cells. The mechanism of action of the complexes was studied on both cancer cell lines via cell cycle analysis and apoptosis assays investigating phosphatidylserine translocation, caspase -3 and -8 activation and mitochondrial membrane potential with most complexes inducing cell cycle arrest followed by cell death via both the extrinsic and intrinsic pathways of apoptosis. Since 1940, 49% of all the available anticancer drugs approved for cancer treatment were natural products or directly derived from natural products. Plants are an excellent source of secondary metabolites, many of which are unique chemical compounds that cannot be synthesized in a laboratory. Ethnobotanical surveys conducted in conjunction with Traditional Health Practitioners of the Mkuranga and Same districts in Tanzania identified 25 plants that are used for the treatment of cancer. Four of these plants (A. mossambicensis, C. adenocaule, C. pseudopulchelusis and R. natalensis) with ethnobotanically reported anticancer usage showed cytotoxic activity against brine shrimp and were selected for further in vitro anticancer studies. All four plants were found to have antiproliferative activity against HeLa cervical cancer cells with IC50 values ranging from 3.4 to 50.8 µg/mL. This study was also tasked with investigating the mechanism of action of C. pseudopulchelus on HeLa cervical cancer cells by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane x disruption. C. pseudopulchelus caused early M phase arrest followed by slippage and subsequent cell death via the extrinsic pathway of apoptosis. In conclusion, this study showed that both novel complexes as well as medicinal plant extracts represent an interesting avenue for the development of novel anticancer drugs that are cheaper and produce less side effects than current therapies. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Oosthuizen, Kenneth Thomas , Venables, Luanne
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Medicinal plants -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52028 , vital:43441
- Description: Cancer is a complex, multifactorial disease that affects millions of individuals every year. The adverse side effects and escalating costs of current therapies coupled with the increased incidence of resistance to these therapies make it imperative that we explore novel treatments for the disease. This study investigated two avenues for novel drug design namely, novel synthetic compounds and medicinal plant extracts. The benzimidazole ring system has shown potential as a scaffold for designing novel anticancer agents. Conjugation of the metal rhenium to novel variants of this ring system open up the possibility of designing novel drugs that serve both a diagnostic and a therapeutic function. This study investigated the in vitro anticancer potential of ten such complexes against selected breast and cervical cancer cell lines. The selectivity of the complexes for cancer cells over normal cells was also investigated while the mechanism of action of effective complexes was determined by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane disruption. All ten complexes were screened against MCF7 breast and HeLa cervical cancer cell lines with four showing antiproliferative activity against both cancer cell lines and one showing cell line specific toxicity against MCF7 breast cancer cells. When looking at the SAR of the compounds it was noted that activity was higher in compounds which contain two potentially bidentate benzothiazole ligands, while compounds with potentially tridentate ligands show good activity, but only if the benzothiazole moiety is not involved in coordination. The complexes showed greater antiproliferative activity against the MCF7 breast cancer cells with IC50 values ranging from 3.2 to 7.0 µM versus a range of 7.6 to 24.4 µM being obtained on the HeLa cervical cancer cells. Antiproliferative complexes were tested against confluent and log phase Vero cells at their respective IC50 values to determine their effect on “normal” cells. Confluent Vero cells showed less cell death than those in log phase indicating that the complexes show preference for proliferating cells. The mechanism of action of the complexes was studied on both cancer cell lines via cell cycle analysis and apoptosis assays investigating phosphatidylserine translocation, caspase -3 and -8 activation and mitochondrial membrane potential with most complexes inducing cell cycle arrest followed by cell death via both the extrinsic and intrinsic pathways of apoptosis. Since 1940, 49% of all the available anticancer drugs approved for cancer treatment were natural products or directly derived from natural products. Plants are an excellent source of secondary metabolites, many of which are unique chemical compounds that cannot be synthesized in a laboratory. Ethnobotanical surveys conducted in conjunction with Traditional Health Practitioners of the Mkuranga and Same districts in Tanzania identified 25 plants that are used for the treatment of cancer. Four of these plants (A. mossambicensis, C. adenocaule, C. pseudopulchelusis and R. natalensis) with ethnobotanically reported anticancer usage showed cytotoxic activity against brine shrimp and were selected for further in vitro anticancer studies. All four plants were found to have antiproliferative activity against HeLa cervical cancer cells with IC50 values ranging from 3.4 to 50.8 µg/mL. This study was also tasked with investigating the mechanism of action of C. pseudopulchelus on HeLa cervical cancer cells by exploring cell cycle arrest, biochemical markers of apoptosis and mitochondrial membrane x disruption. C. pseudopulchelus caused early M phase arrest followed by slippage and subsequent cell death via the extrinsic pathway of apoptosis. In conclusion, this study showed that both novel complexes as well as medicinal plant extracts represent an interesting avenue for the development of novel anticancer drugs that are cheaper and produce less side effects than current therapies. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
Assessing community engagement programmes to mitigate uncontrolled, deliberately ignited fires in forestry plantation-communal land interface, Kwazulu-Natal, South Africa
- Authors: Ramantswana, Nontethelelo
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Forest fires -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52008 , vital:43439
- Description: Forestry plantations in South Africa are surrounded by poor local communities that normally depend on the forestry resources for subsistence. This interface area is faced with human induced uncontrolled fires. There is a lack of understanding regarding the reasons for deliberate ignition of uncontrolled fires. There is also lack of information on the success of community engagement programs (CEPs) as fire protection intervention and / or their implementation barriers. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Ramantswana, Nontethelelo
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Forest fires -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52008 , vital:43439
- Description: Forestry plantations in South Africa are surrounded by poor local communities that normally depend on the forestry resources for subsistence. This interface area is faced with human induced uncontrolled fires. There is a lack of understanding regarding the reasons for deliberate ignition of uncontrolled fires. There is also lack of information on the success of community engagement programs (CEPs) as fire protection intervention and / or their implementation barriers. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2021
- Full Text: false
- Date Issued: 2021-04
Bayesian tolerance intervals and their application to ballistic grouping consistency in competitive shooting
- Authors: Gardiner, Marcell
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Bayesian statistical decision theory -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52456 , vital:43662
- Description: Competitive shooting has become immensely popular since the first modern Games held in 1896. Competitive shooting remains the fastest growing segment in the firearm industry, catering to individuals of all ages. Elite shooters are capable of reaching extreme levels of precision and accuracy, despite many factors existing that affect performance in Olympic shooting. One such factor is speed variability, which is dependent on the mass of the bullet, how constant is the lead being used, and, how constant the gunpowder is. The study focusses on the Bayesian simulation method proposed by Wolfinger (1998) for determining three kinds of tolerance intervals when applied to competitive shooting data, particularly examining speed variability. These tolerance intervals included the (𝛼𝛼,𝛿𝛿) tolerance interval (where 𝛼𝛼 is the content and 𝛿𝛿 is the confidence), the 𝛼𝛼 - expectation tolerance interval (where 𝛼𝛼 is the expected coverage of the interval) and the fixed-in advance tolerance interval in which the interval is held fixed and the proportion of process measurements it contains, is estimated. Speed measurements of individual shots fired were measured with either an Oeler 35P or Magneto Speed V3 chronograph and the data was fitted to a one-way random effects model. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Gardiner, Marcell
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Bayesian statistical decision theory -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52456 , vital:43662
- Description: Competitive shooting has become immensely popular since the first modern Games held in 1896. Competitive shooting remains the fastest growing segment in the firearm industry, catering to individuals of all ages. Elite shooters are capable of reaching extreme levels of precision and accuracy, despite many factors existing that affect performance in Olympic shooting. One such factor is speed variability, which is dependent on the mass of the bullet, how constant is the lead being used, and, how constant the gunpowder is. The study focusses on the Bayesian simulation method proposed by Wolfinger (1998) for determining three kinds of tolerance intervals when applied to competitive shooting data, particularly examining speed variability. These tolerance intervals included the (𝛼𝛼,𝛿𝛿) tolerance interval (where 𝛼𝛼 is the content and 𝛿𝛿 is the confidence), the 𝛼𝛼 - expectation tolerance interval (where 𝛼𝛼 is the expected coverage of the interval) and the fixed-in advance tolerance interval in which the interval is held fixed and the proportion of process measurements it contains, is estimated. Speed measurements of individual shots fired were measured with either an Oeler 35P or Magneto Speed V3 chronograph and the data was fitted to a one-way random effects model. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-04
Benthic habitat mapping using marine geophysics and machine learning on the continental shelf of South Africa
- Authors: Pillay, Talicia
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Marine geophysics
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52061 , vital:43452
- Description: A method to map seafloor substrates using machine learning, based primarily on hydroacoustic data including multibeam bathymetry, backscatter, and side-scan sonar, has been developed. The aim was to produce a customdesigned benthic habitat classification method that digitally integrates marine geophysics and biological science data, with relevance to all elements of the local substrate, and this was the first time it was attempted in a South African context. The algorithm developed is able to produce bio-physical benthic habitat maps and this can be extended along the continental shelf of South Africa as new data setsare collected and the algorithm is supplemented. At the outset, this work has focused on broad categories of rock and detailed categories of sediment. Four study sites with varying substrate were selected to holistically build the algorithm that followed a tiered approach of machine learning: Table Bay, Clifton, Koeberg Harbour and Cape St Francis. Table Bay was used to develop a new method of physical seafloor classification, by comparing and contrasting a number of statistical algorithms and software programs. Clifton was used to test the developed clustering algorithm, and Koeberg which is 35 km to the north was used to validate the algorithm because sediment samples, along with drop camera footage, were integrated to better define the results. The resultant verified algorithm was tested at Cape St Francis, where Remotely Operated Vehicle (ROV) footage was acquired in addition to hydroacoustic data. In the first phase of the process towards developing an algorithm, a customised tool was created within ArcGIS using python scripting language to classify seafloor bathymetry, which can be applied to any area of seafloor whatsoever. The tool was based on pioneering work done by the National Oceanic and Atmospheric Administration (NOAA) on a benthic terrain modelling toolbox and adapted to include side-scan sonar data. In the second phase of work, multibeam bathymetry, backscatter and side-scan sonar data that were processed using Qimera, Fledermaus Geocoder Toolbox, and Navlog processing software, were classified using different machine learning techniques including Decision Trees, Random Forests, and k-means clustering computer algorithms. The results from these algorithms were compared to manually-digitised polygons which were created to classify the seafloor substrate distribution by identification of different textures. Integrating all results facilitated a quantitative comparison that illuminated advantages and disadvantages of each machine learning technique and ultimately the k-means clustering techniques were found to be the simplest to implement and understand and worked most efficiently based on their seafloor segmentation capabilities in Table Bay, against all three hydroacoustic data sets (multibeam bathymetry, backscatter and side-scan sonar). In the third phase of work, ground-truthed seafloor characterisation maps were produced for the two study areas of Clifton and Koeberg Harbour. This applied multibeam bathymetry and backscatter data that were collected and processed with machine learning clustering techniques. , Thesis (MSc) -- Faculty of Science, Ocean Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Pillay, Talicia
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Marine geophysics
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52061 , vital:43452
- Description: A method to map seafloor substrates using machine learning, based primarily on hydroacoustic data including multibeam bathymetry, backscatter, and side-scan sonar, has been developed. The aim was to produce a customdesigned benthic habitat classification method that digitally integrates marine geophysics and biological science data, with relevance to all elements of the local substrate, and this was the first time it was attempted in a South African context. The algorithm developed is able to produce bio-physical benthic habitat maps and this can be extended along the continental shelf of South Africa as new data setsare collected and the algorithm is supplemented. At the outset, this work has focused on broad categories of rock and detailed categories of sediment. Four study sites with varying substrate were selected to holistically build the algorithm that followed a tiered approach of machine learning: Table Bay, Clifton, Koeberg Harbour and Cape St Francis. Table Bay was used to develop a new method of physical seafloor classification, by comparing and contrasting a number of statistical algorithms and software programs. Clifton was used to test the developed clustering algorithm, and Koeberg which is 35 km to the north was used to validate the algorithm because sediment samples, along with drop camera footage, were integrated to better define the results. The resultant verified algorithm was tested at Cape St Francis, where Remotely Operated Vehicle (ROV) footage was acquired in addition to hydroacoustic data. In the first phase of the process towards developing an algorithm, a customised tool was created within ArcGIS using python scripting language to classify seafloor bathymetry, which can be applied to any area of seafloor whatsoever. The tool was based on pioneering work done by the National Oceanic and Atmospheric Administration (NOAA) on a benthic terrain modelling toolbox and adapted to include side-scan sonar data. In the second phase of work, multibeam bathymetry, backscatter and side-scan sonar data that were processed using Qimera, Fledermaus Geocoder Toolbox, and Navlog processing software, were classified using different machine learning techniques including Decision Trees, Random Forests, and k-means clustering computer algorithms. The results from these algorithms were compared to manually-digitised polygons which were created to classify the seafloor substrate distribution by identification of different textures. Integrating all results facilitated a quantitative comparison that illuminated advantages and disadvantages of each machine learning technique and ultimately the k-means clustering techniques were found to be the simplest to implement and understand and worked most efficiently based on their seafloor segmentation capabilities in Table Bay, against all three hydroacoustic data sets (multibeam bathymetry, backscatter and side-scan sonar). In the third phase of work, ground-truthed seafloor characterisation maps were produced for the two study areas of Clifton and Koeberg Harbour. This applied multibeam bathymetry and backscatter data that were collected and processed with machine learning clustering techniques. , Thesis (MSc) -- Faculty of Science, Ocean Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
Cluster analysis for group selection in launch sales predictions
- Authors: Watchurst, Lee
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Cluster analysis
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52003 , vital:43447
- Description: One way for businesses to stay ahead in a competitive market is through the launch of new products and planning for these launches optimally. This includes ordering the correct quantity of stock in advance as well as maintaining these stock levels while the item launches. However, holding too much stock in warehouses can affect the business costs adversely. This research proposes the use of cluster analysis techniques to determine the up-front purchase quantity by identifying similar items and using their initial quantities sold. Products will be grouped based on their numerical and categorical attributes. Once the data is clustered, the Bass model will be used to obtain a sales profile for the new item. The Bass model is a popular choice for product life cycle planning due to the emphasis placed on the timing of adoption. The study will make use of data from a retail and wholesale company that sells, in part, single use items. With the planning for new launches being a key problem point in many companies, this research aims to optimise the planning process and ensure product launch success across stores. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Watchurst, Lee
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Cluster analysis
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52003 , vital:43447
- Description: One way for businesses to stay ahead in a competitive market is through the launch of new products and planning for these launches optimally. This includes ordering the correct quantity of stock in advance as well as maintaining these stock levels while the item launches. However, holding too much stock in warehouses can affect the business costs adversely. This research proposes the use of cluster analysis techniques to determine the up-front purchase quantity by identifying similar items and using their initial quantities sold. Products will be grouped based on their numerical and categorical attributes. Once the data is clustered, the Bass model will be used to obtain a sales profile for the new item. The Bass model is a popular choice for product life cycle planning due to the emphasis placed on the timing of adoption. The study will make use of data from a retail and wholesale company that sells, in part, single use items. With the planning for new launches being a key problem point in many companies, this research aims to optimise the planning process and ensure product launch success across stores. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Date Issued: 2021-04
Deep neural networks for robot vision in evolutionary robotics
- Authors: Watt, Nathan
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Neural networks (Computer science)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52100 , vital:43448
- Description: Advances in electronics manufacturing have made robots and their sensors cheaper and more accessible. Robots can have a variety of sensors, such as touch sensors, distance sensors and cameras. A robot’s controller is the software which interprets its sensors and determines how the robot will behave. The difficulty in programming robot controllers increases with complex robots and complicated tasks, forming a barrier to deploying robots for real-world applications. Robot controllers can be automatically created with Evolutionary Robotics (ER). ER makes use of an Evolutionary Algorithm (EA) to evolve controllers to complete a particular task. Instead of manually programming controllers, an EA can evolve controllers when provided with the robot’s task. ER has been used to evolve controllers for many different kinds of robots with a variety of sensors, however the use of robots with on-board camera sensors has been limited. The nature of EAs makes evolving a controller for a camera-equipped robot particularly difficult. There are two main challenges which complicate the evolution of vision-based controllers. First, every image from a camera contains a large amount of information, and a controller needs many parameters to receive that information, however it is difficult to evolve controllers with such a large number of parameters using EAs. Second, during the process of evolution, it is necessary to evaluate the fitness of many candidate controllers. This is typically done in simulation, however creating a simulator for a camera sensor is a tedious and timeconsuming task, as building a photo-realistic simulated environment requires handcrafted 3-dimensional models, textures and lighting. Two techniques have been used in previous experiments to overcome the challenges associated with evolving vision-based controllers. Either the controller was provided with extremely low-resolution images, or a task-specific algorithm was used to preprocess the images, only providing the necessary information to the controller. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
- Authors: Watt, Nathan
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Neural networks (Computer science)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/52100 , vital:43448
- Description: Advances in electronics manufacturing have made robots and their sensors cheaper and more accessible. Robots can have a variety of sensors, such as touch sensors, distance sensors and cameras. A robot’s controller is the software which interprets its sensors and determines how the robot will behave. The difficulty in programming robot controllers increases with complex robots and complicated tasks, forming a barrier to deploying robots for real-world applications. Robot controllers can be automatically created with Evolutionary Robotics (ER). ER makes use of an Evolutionary Algorithm (EA) to evolve controllers to complete a particular task. Instead of manually programming controllers, an EA can evolve controllers when provided with the robot’s task. ER has been used to evolve controllers for many different kinds of robots with a variety of sensors, however the use of robots with on-board camera sensors has been limited. The nature of EAs makes evolving a controller for a camera-equipped robot particularly difficult. There are two main challenges which complicate the evolution of vision-based controllers. First, every image from a camera contains a large amount of information, and a controller needs many parameters to receive that information, however it is difficult to evolve controllers with such a large number of parameters using EAs. Second, during the process of evolution, it is necessary to evaluate the fitness of many candidate controllers. This is typically done in simulation, however creating a simulator for a camera sensor is a tedious and timeconsuming task, as building a photo-realistic simulated environment requires handcrafted 3-dimensional models, textures and lighting. Two techniques have been used in previous experiments to overcome the challenges associated with evolving vision-based controllers. Either the controller was provided with extremely low-resolution images, or a task-specific algorithm was used to preprocess the images, only providing the necessary information to the controller. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text: false
Deep neural networks for robot vision in evolutionary robotics
- Authors: Watt,Nathan
- Date: 2021-04
- Subjects: Evolutionary robotics -- South Africa , Neural networks
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61601 , vital:71473
- Description: Description Advances in electronics manufacturing have made robots and their sensors cheaper and more accessible. Robots can have a variety of sensors, such as touch sensors, distance sensors and cameras. A robot’s controller is the software which interprets its sensors and determines how the robot will behave. The difficulty in programming robot controllers increases with complex robots and complicated tasks, forming a barrier to deploying robots for real-world applications. Robot controllers can be automatically created with Evolutionary Robotics (ER). ER makes use of an Evolutionary Algorithm (EA) to evolve controllers to complete a particular task. Instead of manually programming controllers, an EA can evolve controllers when provided with the robot’s task. ER has been used to evolve controllers for many different kinds of robots with a variety of sensors, however the use of robots with on-board camera sensors has been limited. The nature of EAs makes evolving a controller for a camera-equipped robot particularly difficult. There are two main challenges which complicate the evolution of vision-based controllers. First, every image from a camera contains a large amount of information, and a controller needs many parameters to receive that information, however it is difficult to evolve controllers with such a large number of parameters using EAs. Second, during the process of evolution, it is necessary to evaluate the fitness of many candidate controllers. This is typically done in simulation, however creating a simulator for a camera sensor is a tedious and timeconsuming task, as building a photo-realistic simulated environment requires handcrafted 3-dimensional models, textures and lighting. Two techniques have been used in previous experiments to overcome the challenges associated with evolving vision-based controllers. Either the controller was provided with extremely low-resolution images, or a task-specific algorithm was used to preprocess the images, only providing the necessary information to the controller. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Watt,Nathan
- Date: 2021-04
- Subjects: Evolutionary robotics -- South Africa , Neural networks
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/61601 , vital:71473
- Description: Description Advances in electronics manufacturing have made robots and their sensors cheaper and more accessible. Robots can have a variety of sensors, such as touch sensors, distance sensors and cameras. A robot’s controller is the software which interprets its sensors and determines how the robot will behave. The difficulty in programming robot controllers increases with complex robots and complicated tasks, forming a barrier to deploying robots for real-world applications. Robot controllers can be automatically created with Evolutionary Robotics (ER). ER makes use of an Evolutionary Algorithm (EA) to evolve controllers to complete a particular task. Instead of manually programming controllers, an EA can evolve controllers when provided with the robot’s task. ER has been used to evolve controllers for many different kinds of robots with a variety of sensors, however the use of robots with on-board camera sensors has been limited. The nature of EAs makes evolving a controller for a camera-equipped robot particularly difficult. There are two main challenges which complicate the evolution of vision-based controllers. First, every image from a camera contains a large amount of information, and a controller needs many parameters to receive that information, however it is difficult to evolve controllers with such a large number of parameters using EAs. Second, during the process of evolution, it is necessary to evaluate the fitness of many candidate controllers. This is typically done in simulation, however creating a simulator for a camera sensor is a tedious and timeconsuming task, as building a photo-realistic simulated environment requires handcrafted 3-dimensional models, textures and lighting. Two techniques have been used in previous experiments to overcome the challenges associated with evolving vision-based controllers. Either the controller was provided with extremely low-resolution images, or a task-specific algorithm was used to preprocess the images, only providing the necessary information to the controller. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2021
- Full Text:
- Date Issued: 2021-04
Descriptive analysis of organic farming systems and factors affecting adoption and disadoption in Zambia : a case study
- Authors: Munthali, Robert
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Organic farming -- Zambia
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/52111 , vital:43434
- Description: The last 30 years since the early 1990s has seen the heightened promotion of organic farming as a sustainable farming option in Zambia. The main objectives of this research study were to carry out an analysis of organic farming systems in order to understand factors affecting adoption, as well as reasons why some organic farmers discontinue using the approach. The study involved four districts in Zambia: Mazabuka, Chikankata, Lusaka and Chongwe. Specifically, the research investigated challenges and limitations of organic agronomic practices, and analysed factors that influence adopters and disadopters of organic agriculture. Primary data were collected through interviews and by administering semi-structured questionnaires. The research population comprised approximately 250 farmers adopters and disadopters, with the sample size being 50 farmers chosen across four districts using systematic random sampling methods. Additionally, five observation research field trials were conducted in order to gather practical data on individual farmer’s crop management practices. Farmers adopting and maintaining organic methods reported several reasons for embracing the system, some of which are: organic farming is regenerative; it is environmentally responsible; it uses manure, believed to help build healthy soils rich in organic matter with better nutrient and moisture holding capacity; pesticides and synthetic fertilizers are not used, reducing the levels of toxic residues in organic products which ultimately promotes health. Labour constraints, pest and disease challenges and weed problems were some of the reasons for disadoption. Data showed that disadopters had lower education (48% had primary education), were older and with slightly more children. Although there were more women adopting organic agriculture compared to men, the difference was small 56% and 44% women and men respectively. Among disadopters there were more women (67%) compared to men (33%). Overall, the study results suggest that promotion of organic agriculture should be encouraged through liaison with government departments such as the Zambian Department of Agriculture to include organic agriculture when developing policies. In general, organic farmers have positive opinions concerning the benefits resulting from organic agriculture. Organic farmers should enjoy equal opportunities to conventional agriculture in the provision of extension services, input support, infrastructural development, access to financial resources to procure farm machinery, and equipment and most important of all, they should get fair prices for their organic produce and products. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text: false
- Date Issued: 2021-04
- Authors: Munthali, Robert
- Date: 2021-04
- Subjects: Gqeberha (South Africa) , Eastern Cape (South Africa) , Organic farming -- Zambia
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/52111 , vital:43434
- Description: The last 30 years since the early 1990s has seen the heightened promotion of organic farming as a sustainable farming option in Zambia. The main objectives of this research study were to carry out an analysis of organic farming systems in order to understand factors affecting adoption, as well as reasons why some organic farmers discontinue using the approach. The study involved four districts in Zambia: Mazabuka, Chikankata, Lusaka and Chongwe. Specifically, the research investigated challenges and limitations of organic agronomic practices, and analysed factors that influence adopters and disadopters of organic agriculture. Primary data were collected through interviews and by administering semi-structured questionnaires. The research population comprised approximately 250 farmers adopters and disadopters, with the sample size being 50 farmers chosen across four districts using systematic random sampling methods. Additionally, five observation research field trials were conducted in order to gather practical data on individual farmer’s crop management practices. Farmers adopting and maintaining organic methods reported several reasons for embracing the system, some of which are: organic farming is regenerative; it is environmentally responsible; it uses manure, believed to help build healthy soils rich in organic matter with better nutrient and moisture holding capacity; pesticides and synthetic fertilizers are not used, reducing the levels of toxic residues in organic products which ultimately promotes health. Labour constraints, pest and disease challenges and weed problems were some of the reasons for disadoption. Data showed that disadopters had lower education (48% had primary education), were older and with slightly more children. Although there were more women adopting organic agriculture compared to men, the difference was small 56% and 44% women and men respectively. Among disadopters there were more women (67%) compared to men (33%). Overall, the study results suggest that promotion of organic agriculture should be encouraged through liaison with government departments such as the Zambian Department of Agriculture to include organic agriculture when developing policies. In general, organic farmers have positive opinions concerning the benefits resulting from organic agriculture. Organic farmers should enjoy equal opportunities to conventional agriculture in the provision of extension services, input support, infrastructural development, access to financial resources to procure farm machinery, and equipment and most important of all, they should get fair prices for their organic produce and products. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2021
- Full Text: false
- Date Issued: 2021-04