Patterns and drivers of benthic macrofouna to support systematic conservation planning for marine unconsolidated sediment ecosystems
- Authors: Karenyi, Natasha
- Date: 2014
- Subjects: Marine sediments -- Microbiology , Biotic communities , Ecosystem management , Conservation of natural resources
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10355 , http://hdl.handle.net/10948/d1020989
- Description: Marine unconsolidated sediments constitute the largest ecosystems on earth in terms of spatial coverage, but there are still critical gaps in the science required to support conservation and ecosystem-based management. This is mainly due to the inaccessibility of these ecosystems in wave-exposed environments or deeper waters and the difficulty in observing biota in their three-dimensional sedimentary habitat. Currently, the physical driving processes of intertidal unconsolidated sediment ecosystems are much better understood than those of the subtidal ecosystems. However, these ecosystems are linked through water and sediment movement. This thesis, therefore, considers the continuum of unconsolidated sediment ecosystems across the entire continental shelf (i.e. intertidal to the shelf edge). The aim of this thesis was two-fold; (i) to advance the foundational understanding of biodiversity patterns and driving processes in unconsolidated sediment habitats, and (ii) to apply this knowledge in the development of a systematic conservation plan for marine unconsolidated sediment ecosystems. The South African west coast continental shelf was used as a case study in order to represent Eastern boundary upwelling regions. This study sought to investigate biodiversity patterns in macro-infaunal communities and determine their driving processes for incorporation into habitat classifications and the development of a habitat map. Systematic conservation plans require a map of biodiversity patterns and processes, and quantitative conservation targets to ensure representation of all biodiversity features including habitats.in marine protected areas. This thesis provided these key elements by classifying the unconsolidated sediment habitats and determining habitat-specific evidence-based conservation targets to support conservation of these important ecosystems. The application of these elements was then demonstrated in a systematic conservation plan for the unconsolidated sediment ecosystems of the South African west coast. Diversity patterns were examined using physical and macro-infauna data, ranging from the beach to the shelf edge (0-412 m). These data were analysed to develop two different habitat classifications, namely seascapes derived from geophysical and biophysical data, and biotopes derived from the combination of macro-infaunal and physical data. Multivariate analyses of 13 physical variables identified eight seascapes for the unconsolidated sediment samples from 48 sites on the South African west coast. These were based on depth, slope, sediment type, and upwelling-related processes (i.e. maximum chlorophyll concentration, sediment organic carbon content and austral summer bottom oxygen concentration). Latitude and bottom temperature were not considered major drivers of seascapes on the west coast because latitude closely reflected changes in upwelling-related processes and the temperature range was narrow across the shelf. This study revealed that productivity, a biophysical variable not usually included in geo-physical habitat classifications, played a significant role in the definition of seascapes on the South African west coast. It is therefore recommended that productivity be included in future seascape classifications to improve the utility of these classifications particularly in areas of variable productivity. Seascapes should, however, be tested against biological data to improve the understanding of key physical drivers of communities in unconsolidated sediment ecosystems. Macro-infaunal community distributions were determined along with their physical drivers for the unconsolidated sediments of the South African west coast. A total of 44 828 individuals from 469 taxa were identified from 48 sites representing 46.2 m2 of seafloor. Seven distinct macro-infaunal communities were defined through multivariate analyses and their key characteristic and distinguishing species were identified. These communities reflected five depth zones across the shelf, namely beach, inner shelf (10-42 m), middle shelf (60-142 m), outer shelf (150-357 m) and shelf edge (348-412 m). The processes driving the community structure of these depth zones were postulated to be tides, wave turbulence, seasonal hypoxia, habitat stability and homogeneity, and internal tides and/or shelf break upwelling, with drivers listed in order of increasing influence with depth. The middle shelf was further separated into three distinct communities based on sediment type, sediment organic carbon content and frequency of hypoxia. Variations in water turbulence, sediment grain size, upwelling-related variables and riverine sediment input were identified as the likely primary drivers of macro-infaunal community patterns. This chapter culminated in the development of a biotope classification based on the combination of macro-infaunal communities and their physical habitats (i.e. biotopes). South Africa has developed an expert-derived National Marine and Coastal Habitat (SANMC) Classification System which is used as a biodiversity surrogate in ecosystem assessment and spatial planning. This thesis tested the validity of this classification and the data derived Seascape classification against macro-infauna species abundance and biomass data in an effort to determine how well the different classifications represent macro-infaunal diversity of the west coast. These two classifications were also compared to the Biotope classification which combines macro-infaunal communities with their physical habitats. A canonical analysis of principle coordinates (CAP) was utilised to test the success with which each sample was allocated to the relevant habitat type in each classification. The total allocation success for each classification was used as a measure of effectiveness in terms of representing biodiversity patterns. Both classifications had similar allocation successes of 89-92 percent and 92-94 percent for the Seascape and National Habitat Classification respectively, but either over- or under-classified the macrofauna communities. The Biotope classification had the highest allocation success (98 percent), therefore it is the most accurate reflection of the macrofauna biodiversity patterns on the west coast. A key finding of this study was the increasing accuracy of classifications from physically- to expert- to biologically-derived habitat classifications. In this thesis, the Biotope classification was deemed the best representative of biodiversity patterns and was therefore used to produce the Biotope map for use in spatial assessment and planning. The distinct depth patterns that emerged in both the Seascape and Biotope classifications highlighted the need for further investigation of the relationship between depth and biodiversity. Despite variability in macro-infaunal communities, a general unifying pattern in biodiversity across the shelf was sought. Three relationships between depth and species richness have been described in the literature; namely a unimodal pattern, a positively linear relationship with depth, and no relationship between depth and species richness. These hypotheses were tested on the west coast. Two different species richness metrics were utilised to test the depth-diversity relationship, namely observed species density (spp.0.2m-2) and estimated species richness (spp.site-1). Observed species density increased from the beach to the shelf edge (350 m), then decreased to 412 m. The decline may have been due to difficulty in detecting species at greater depths as a result of sampling challenges. The inclusion of an innovative extrapolative method for estimating species richness (the capture-recapture heterogeneity model) within the Bayesian statistical framework mitigated the effects of species detection heterogeneity and revealed that species richness actually increased continuously across the shelf from beach to shelf edge. Thus the general relationship between depth and species richness is positively linear on the west coast of South Africa The new macro-infauna dataset and biotope map provided the opportunity to develop the first habitat-specific evidence-based conservation targets for unconsolidated sediments of the west coast. Species-Area Relationship (SAR) based conservation targets were developed for the biotopes using a modification of the generally accepted methodology. The accepted methodology has three steps (i) the estimation of total species richness for each habitat using the Bootstrap asymptotic estimator, (ii) the calculation of the slope of the species area curve (i.e. the z-value), and (iii) the calculation of targets representing 80 percent of the species. The inclusion of an innovative extrapolative species richness estimator, the Multi-species Site Occupancy Model (MSOM) provided better species richness estimation than the more conventional bootstrap species richness estimator, even though both are based on species accumulation. The MSOM, applied in the Bayesian statistical framework takes detectability of a species into account.
- Full Text:
- Date Issued: 2014
- Authors: Karenyi, Natasha
- Date: 2014
- Subjects: Marine sediments -- Microbiology , Biotic communities , Ecosystem management , Conservation of natural resources
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10355 , http://hdl.handle.net/10948/d1020989
- Description: Marine unconsolidated sediments constitute the largest ecosystems on earth in terms of spatial coverage, but there are still critical gaps in the science required to support conservation and ecosystem-based management. This is mainly due to the inaccessibility of these ecosystems in wave-exposed environments or deeper waters and the difficulty in observing biota in their three-dimensional sedimentary habitat. Currently, the physical driving processes of intertidal unconsolidated sediment ecosystems are much better understood than those of the subtidal ecosystems. However, these ecosystems are linked through water and sediment movement. This thesis, therefore, considers the continuum of unconsolidated sediment ecosystems across the entire continental shelf (i.e. intertidal to the shelf edge). The aim of this thesis was two-fold; (i) to advance the foundational understanding of biodiversity patterns and driving processes in unconsolidated sediment habitats, and (ii) to apply this knowledge in the development of a systematic conservation plan for marine unconsolidated sediment ecosystems. The South African west coast continental shelf was used as a case study in order to represent Eastern boundary upwelling regions. This study sought to investigate biodiversity patterns in macro-infaunal communities and determine their driving processes for incorporation into habitat classifications and the development of a habitat map. Systematic conservation plans require a map of biodiversity patterns and processes, and quantitative conservation targets to ensure representation of all biodiversity features including habitats.in marine protected areas. This thesis provided these key elements by classifying the unconsolidated sediment habitats and determining habitat-specific evidence-based conservation targets to support conservation of these important ecosystems. The application of these elements was then demonstrated in a systematic conservation plan for the unconsolidated sediment ecosystems of the South African west coast. Diversity patterns were examined using physical and macro-infauna data, ranging from the beach to the shelf edge (0-412 m). These data were analysed to develop two different habitat classifications, namely seascapes derived from geophysical and biophysical data, and biotopes derived from the combination of macro-infaunal and physical data. Multivariate analyses of 13 physical variables identified eight seascapes for the unconsolidated sediment samples from 48 sites on the South African west coast. These were based on depth, slope, sediment type, and upwelling-related processes (i.e. maximum chlorophyll concentration, sediment organic carbon content and austral summer bottom oxygen concentration). Latitude and bottom temperature were not considered major drivers of seascapes on the west coast because latitude closely reflected changes in upwelling-related processes and the temperature range was narrow across the shelf. This study revealed that productivity, a biophysical variable not usually included in geo-physical habitat classifications, played a significant role in the definition of seascapes on the South African west coast. It is therefore recommended that productivity be included in future seascape classifications to improve the utility of these classifications particularly in areas of variable productivity. Seascapes should, however, be tested against biological data to improve the understanding of key physical drivers of communities in unconsolidated sediment ecosystems. Macro-infaunal community distributions were determined along with their physical drivers for the unconsolidated sediments of the South African west coast. A total of 44 828 individuals from 469 taxa were identified from 48 sites representing 46.2 m2 of seafloor. Seven distinct macro-infaunal communities were defined through multivariate analyses and their key characteristic and distinguishing species were identified. These communities reflected five depth zones across the shelf, namely beach, inner shelf (10-42 m), middle shelf (60-142 m), outer shelf (150-357 m) and shelf edge (348-412 m). The processes driving the community structure of these depth zones were postulated to be tides, wave turbulence, seasonal hypoxia, habitat stability and homogeneity, and internal tides and/or shelf break upwelling, with drivers listed in order of increasing influence with depth. The middle shelf was further separated into three distinct communities based on sediment type, sediment organic carbon content and frequency of hypoxia. Variations in water turbulence, sediment grain size, upwelling-related variables and riverine sediment input were identified as the likely primary drivers of macro-infaunal community patterns. This chapter culminated in the development of a biotope classification based on the combination of macro-infaunal communities and their physical habitats (i.e. biotopes). South Africa has developed an expert-derived National Marine and Coastal Habitat (SANMC) Classification System which is used as a biodiversity surrogate in ecosystem assessment and spatial planning. This thesis tested the validity of this classification and the data derived Seascape classification against macro-infauna species abundance and biomass data in an effort to determine how well the different classifications represent macro-infaunal diversity of the west coast. These two classifications were also compared to the Biotope classification which combines macro-infaunal communities with their physical habitats. A canonical analysis of principle coordinates (CAP) was utilised to test the success with which each sample was allocated to the relevant habitat type in each classification. The total allocation success for each classification was used as a measure of effectiveness in terms of representing biodiversity patterns. Both classifications had similar allocation successes of 89-92 percent and 92-94 percent for the Seascape and National Habitat Classification respectively, but either over- or under-classified the macrofauna communities. The Biotope classification had the highest allocation success (98 percent), therefore it is the most accurate reflection of the macrofauna biodiversity patterns on the west coast. A key finding of this study was the increasing accuracy of classifications from physically- to expert- to biologically-derived habitat classifications. In this thesis, the Biotope classification was deemed the best representative of biodiversity patterns and was therefore used to produce the Biotope map for use in spatial assessment and planning. The distinct depth patterns that emerged in both the Seascape and Biotope classifications highlighted the need for further investigation of the relationship between depth and biodiversity. Despite variability in macro-infaunal communities, a general unifying pattern in biodiversity across the shelf was sought. Three relationships between depth and species richness have been described in the literature; namely a unimodal pattern, a positively linear relationship with depth, and no relationship between depth and species richness. These hypotheses were tested on the west coast. Two different species richness metrics were utilised to test the depth-diversity relationship, namely observed species density (spp.0.2m-2) and estimated species richness (spp.site-1). Observed species density increased from the beach to the shelf edge (350 m), then decreased to 412 m. The decline may have been due to difficulty in detecting species at greater depths as a result of sampling challenges. The inclusion of an innovative extrapolative method for estimating species richness (the capture-recapture heterogeneity model) within the Bayesian statistical framework mitigated the effects of species detection heterogeneity and revealed that species richness actually increased continuously across the shelf from beach to shelf edge. Thus the general relationship between depth and species richness is positively linear on the west coast of South Africa The new macro-infauna dataset and biotope map provided the opportunity to develop the first habitat-specific evidence-based conservation targets for unconsolidated sediments of the west coast. Species-Area Relationship (SAR) based conservation targets were developed for the biotopes using a modification of the generally accepted methodology. The accepted methodology has three steps (i) the estimation of total species richness for each habitat using the Bootstrap asymptotic estimator, (ii) the calculation of the slope of the species area curve (i.e. the z-value), and (iii) the calculation of targets representing 80 percent of the species. The inclusion of an innovative extrapolative species richness estimator, the Multi-species Site Occupancy Model (MSOM) provided better species richness estimation than the more conventional bootstrap species richness estimator, even though both are based on species accumulation. The MSOM, applied in the Bayesian statistical framework takes detectability of a species into account.
- Full Text:
- Date Issued: 2014
An investigation of IgE regulation by recombinant soluble IgE receptors and co-receptors in human cell culture models
- Authors: Bowles, Sandra Lyn
- Date: 2010
- Subjects: Immunoglobulin E , Allergy
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10321 , http://hdl.handle.net/10948/1231 , Immunoglobulin E , Allergy
- Description: Type I hypersensitivities are mediated by the IgE antibody. The effector functions and synthesis of IgE result from interactions with a network of proteins that include a high affinity (FcRIα) and a low affinity (CD23, FcRII) Fc receptor in conjunction with the B lymphocyte receptor, CD21. CD23 is a multifunctional type II transmembrane protein that binds its known ligands through its ectodomain either as a membrane-bound or soluble receptor generated in vivo by specific proteolytic cleavages. IgE production is primarily regulated by interactions between IgE, CD23 and CD21. Despite its importance for development of strategies to limit hypersensitivity, precise information about the molecular interactions remains limited. During this study, I engineered, expressed and purified from bacteria three soluble human CD23 fragments that are normally formed in vivo and shed from the cell surface (1) derCD23, amino acids 156-298 (2) sCD23, amino acids 150-321 and (3) the entire ectodomain, exCD23, amino acids 48-321 to examine the comparative binding of recombinant human CD21 SCR 1-2 and native human IgE to these fragments. Gel filtration HPLC revealed that derCD23 and sCD23 were monomeric whereas exCD23 assembled as a heterogeneous mixture that included trimers and monomers. At the concentrations utilized, CD23 fragments sCD23 and exCD23 bound CD21 with similar affinity, whereas interaction between derCD23 and CD21 was minimal when analyzed by surface plasmon resonance (SPR) spectroscopy. These findings suggest that penultimate “tail” amino acids between 298 and 321 stabilize CD21 attachment, although it cannot be ruled out, the region between Met 150 and Ser 156 may also play a role in binding CD21 SCR 1-2. In contrast, there is a progressive increment in the affinity of soluble fragments (exCD23>sCD23>derCD23) for IgE, upon increasing length of the proximal CD23 “stalk” domain. These findings highlight the differences in both the structural basis and affinity of the three physiological fragments of human CD23 for the ligands CD21 and IgE and underscore the complexity of CD23-mediated regulatory networks. It was found that B-cells only make up ~5% of the PBMC population, and that these cells were able to be activated, via STAT-6 phosphorylation, to enter class switch recombination (CSR) by the addition of switch factors (IL-4 and anti-CD40). Titration experiments dictated that 25 ng/mL of CD23 was the most efficient concentration to up-regulate IgE synthesis in PBMCs; furthermore, soluble CD23 proteins were incubated with PBMCs in the presence and absence of CD21 SCR 1-2 to investigate the effect that these recombinant proteins have on IgE synthesis. Results showed that the influence of recombinant proteins (both CD23 and CD21) on IgE synthesis was slight. It was shown that while derCD23 had no significant effect, monomeric sCD23 down-regulated, and the mixture of monomeric and oligomeric exCD23 up-regulated IgE synthesis. On addition of CD21 SCR 1-2 to the cells switched and treated with soluble CD23, it was found that in both cases for sCD23 and exCD23, IgE synthesis was increased, while for derCD23, there was no noticeable difference in IgE synthesis. This confirmed previous data showing the lack of binding between derCD23 and CD21 SCR 1-2. The exact binding site for CD21 on the CD23 molecule is unknown, and incompletely represented in the NMR and crystal structures. It is thought that CD21 binds to the C-terminal tail section, not present in derCD23. It is therefore likely that only a negative-feedback mechanism operates with derCD23 to regulate IgE synthesis. Further investigation of the binding of CD23 fragments to SCR 5-8 of CD21 and the effect of this on IgE synthesis may lead to a potential therapeutic role for derCD23 in the treatment of allergic disease. Data accumulated in this study suggests that investigating the modulation of oligomeric state and thus the activity of soluble CD23 fragments may be important in the construction of new regulators of IgE synthesis.
- Full Text:
- Date Issued: 2010
- Authors: Bowles, Sandra Lyn
- Date: 2010
- Subjects: Immunoglobulin E , Allergy
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10321 , http://hdl.handle.net/10948/1231 , Immunoglobulin E , Allergy
- Description: Type I hypersensitivities are mediated by the IgE antibody. The effector functions and synthesis of IgE result from interactions with a network of proteins that include a high affinity (FcRIα) and a low affinity (CD23, FcRII) Fc receptor in conjunction with the B lymphocyte receptor, CD21. CD23 is a multifunctional type II transmembrane protein that binds its known ligands through its ectodomain either as a membrane-bound or soluble receptor generated in vivo by specific proteolytic cleavages. IgE production is primarily regulated by interactions between IgE, CD23 and CD21. Despite its importance for development of strategies to limit hypersensitivity, precise information about the molecular interactions remains limited. During this study, I engineered, expressed and purified from bacteria three soluble human CD23 fragments that are normally formed in vivo and shed from the cell surface (1) derCD23, amino acids 156-298 (2) sCD23, amino acids 150-321 and (3) the entire ectodomain, exCD23, amino acids 48-321 to examine the comparative binding of recombinant human CD21 SCR 1-2 and native human IgE to these fragments. Gel filtration HPLC revealed that derCD23 and sCD23 were monomeric whereas exCD23 assembled as a heterogeneous mixture that included trimers and monomers. At the concentrations utilized, CD23 fragments sCD23 and exCD23 bound CD21 with similar affinity, whereas interaction between derCD23 and CD21 was minimal when analyzed by surface plasmon resonance (SPR) spectroscopy. These findings suggest that penultimate “tail” amino acids between 298 and 321 stabilize CD21 attachment, although it cannot be ruled out, the region between Met 150 and Ser 156 may also play a role in binding CD21 SCR 1-2. In contrast, there is a progressive increment in the affinity of soluble fragments (exCD23>sCD23>derCD23) for IgE, upon increasing length of the proximal CD23 “stalk” domain. These findings highlight the differences in both the structural basis and affinity of the three physiological fragments of human CD23 for the ligands CD21 and IgE and underscore the complexity of CD23-mediated regulatory networks. It was found that B-cells only make up ~5% of the PBMC population, and that these cells were able to be activated, via STAT-6 phosphorylation, to enter class switch recombination (CSR) by the addition of switch factors (IL-4 and anti-CD40). Titration experiments dictated that 25 ng/mL of CD23 was the most efficient concentration to up-regulate IgE synthesis in PBMCs; furthermore, soluble CD23 proteins were incubated with PBMCs in the presence and absence of CD21 SCR 1-2 to investigate the effect that these recombinant proteins have on IgE synthesis. Results showed that the influence of recombinant proteins (both CD23 and CD21) on IgE synthesis was slight. It was shown that while derCD23 had no significant effect, monomeric sCD23 down-regulated, and the mixture of monomeric and oligomeric exCD23 up-regulated IgE synthesis. On addition of CD21 SCR 1-2 to the cells switched and treated with soluble CD23, it was found that in both cases for sCD23 and exCD23, IgE synthesis was increased, while for derCD23, there was no noticeable difference in IgE synthesis. This confirmed previous data showing the lack of binding between derCD23 and CD21 SCR 1-2. The exact binding site for CD21 on the CD23 molecule is unknown, and incompletely represented in the NMR and crystal structures. It is thought that CD21 binds to the C-terminal tail section, not present in derCD23. It is therefore likely that only a negative-feedback mechanism operates with derCD23 to regulate IgE synthesis. Further investigation of the binding of CD23 fragments to SCR 5-8 of CD21 and the effect of this on IgE synthesis may lead to a potential therapeutic role for derCD23 in the treatment of allergic disease. Data accumulated in this study suggests that investigating the modulation of oligomeric state and thus the activity of soluble CD23 fragments may be important in the construction of new regulators of IgE synthesis.
- Full Text:
- Date Issued: 2010
Efficiency evaluation of South African water service provision
- Authors: Brettenny, Warren James
- Date: 2017
- Subjects: Water-supply -- South Africa Municipal water supply -- South Africa , Municipal water supply -- South Africa -- Management Benchmarking (Management) -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/14741 , vital:27835
- Description: In recent years South Africa has experienced numerous service delivery protests. These protests are a result of the lack of delivery of basic services such as water and sanitation (amongst others). To address this, local governments have taken part in benchmarking initiatives (National Benchmarking Initiative, Municipal Benchmarking Initiative) and regulation programmes (BlueDrop,GreenDrop) in an effort to improve the quality of potable water and sanitation services. The latter of these focuses on the quality of the water services delivered and neither focus on the efficiency with which this delivery is achieved. This study uses both nonparametric (data envelopment analysis) aswell as parametric (stochastic frontier) methods to assess the efficiency of water service provision in South Africa over a six year period from 2005 to 2010. Subsequently, the method which is most suited for use in the South African context is proposed. In addition, this study demonstrates how these methods can be used to determine the effectiveness of benchmarking initiatives, namely the National Benchmarking Initiative, in improving the efficiency of water service provision. Furthermore, additional insight into the selection ofm in them out of n bootstrap procedure for efficiency evaluations is established through a simulation study. The inclusion of efficiency evaluations into South African benchmarking initiatives provides new and important insight into the standard of water service delivery. As such, the techniques used in this study illustrate how efficiency analysis can enhance benchmarking initiatives in South Africa.
- Full Text:
- Date Issued: 2017
- Authors: Brettenny, Warren James
- Date: 2017
- Subjects: Water-supply -- South Africa Municipal water supply -- South Africa , Municipal water supply -- South Africa -- Management Benchmarking (Management) -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/14741 , vital:27835
- Description: In recent years South Africa has experienced numerous service delivery protests. These protests are a result of the lack of delivery of basic services such as water and sanitation (amongst others). To address this, local governments have taken part in benchmarking initiatives (National Benchmarking Initiative, Municipal Benchmarking Initiative) and regulation programmes (BlueDrop,GreenDrop) in an effort to improve the quality of potable water and sanitation services. The latter of these focuses on the quality of the water services delivered and neither focus on the efficiency with which this delivery is achieved. This study uses both nonparametric (data envelopment analysis) aswell as parametric (stochastic frontier) methods to assess the efficiency of water service provision in South Africa over a six year period from 2005 to 2010. Subsequently, the method which is most suited for use in the South African context is proposed. In addition, this study demonstrates how these methods can be used to determine the effectiveness of benchmarking initiatives, namely the National Benchmarking Initiative, in improving the efficiency of water service provision. Furthermore, additional insight into the selection ofm in them out of n bootstrap procedure for efficiency evaluations is established through a simulation study. The inclusion of efficiency evaluations into South African benchmarking initiatives provides new and important insight into the standard of water service delivery. As such, the techniques used in this study illustrate how efficiency analysis can enhance benchmarking initiatives in South Africa.
- Full Text:
- Date Issued: 2017
Disputes, relationships and identity: analysing human-human conflicts as a basis for human-wildlife conflicts in the mid-Zambezi valley, northern Zimbabwe
- Authors: Jani, Vincent
- Date: 2018
- Subjects: Environmental geography , Wildlife management Wildlife conservation Human-animal relationships
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/30364 , vital:30934
- Description: This study analysed how human-human conflicts (HHCs) underlie human-wildlife conflicts (HWCs) in Chapoto Ward in the mid-Zambezi valley, northern Zimbabwe. The analytical framework entailed the use of the Levels of Conflict Model (LCM) – a model that seeks to expose different levels of conflict. To gain a rich understanding of the conflicts under investigation, a qualitative research design was employed with triangulation at its core in order to ensure the necessary quality and rigour of the findings. In this case, four different types of data were used, namely, in-depth interviews with heads of households, key informant interviews, focus group sessions, and document analysis. Thematic and content analysis were used to analyse the data which were classified into the following conflict levels: surface level disputes; an intermediate level involving ongoing conflictual relationships; and a deeper level of conflict rooted in identity. Three key findings were generated. Firstly, a substantial number of long-standing disputes were recorded during the ten-year period (2007-2016). Most of these disputes were not resolved because they had a long and complicated history which resulted in previous disputes resurfacing whenever a current one arose. Secondly, the history of unresolved conflict resulted in mistrust and failure to find common ground between the parties involved in the conflict. Lastly, the source of the disputes and unresolved conflicts was traced back to the identity level. This means that the antagonistic relationships among the stakeholders spilled over into the labelling and stigmatisation of all the groups involved in wildlife management. Thus, conflict between people and wildlife in Chapoto Ward was demonstrated to be a complex issue and underlain by HHC. These findings support the new line of thinking that HWC should not be viewed as simply a problem between people and wildlife but as a conflict between stakeholders with divergent views over wildlife management which manifests as HHC. Furthermore, the degree of polarisation between groups is substantial. In light of these findings, four major conclusions are drawn. Firstly, is the need to shift from narrowly focusing on the proximate conflicts between people and wildlife, to fully understand the complexity of conflict in order to arrive at solutions that successfully mitigate conflict between people and wildlife, and to address the underlying and deep-rooted conflict between stakeholders with divergent wildlife management goals. Secondly, the need for concerted efforts to ensure the involvement of all stakeholders, including women, in wildlife management and conservation by developing structures that enhance active participation of the local people in decision-making, v which promotes the success of conservation initiatives. Thirdly, the need to address the underlying and deep-rooted conflicts over wildlife management by building positive relationships and trust between stakeholders through the holding of regular capacity building workshops based on a more respectful and inclusive process. Fourthly, is the need to consider the interests of both ethnic groups, namely the Doma and the Chikunda by gathering information on the preferences of the identity groups in order to increase cooperation among them. Overall, the thesis introduces a new lens through which one can clearly understand the complexity of the conflict between people and wildlife.
- Full Text:
- Date Issued: 2018
- Authors: Jani, Vincent
- Date: 2018
- Subjects: Environmental geography , Wildlife management Wildlife conservation Human-animal relationships
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/30364 , vital:30934
- Description: This study analysed how human-human conflicts (HHCs) underlie human-wildlife conflicts (HWCs) in Chapoto Ward in the mid-Zambezi valley, northern Zimbabwe. The analytical framework entailed the use of the Levels of Conflict Model (LCM) – a model that seeks to expose different levels of conflict. To gain a rich understanding of the conflicts under investigation, a qualitative research design was employed with triangulation at its core in order to ensure the necessary quality and rigour of the findings. In this case, four different types of data were used, namely, in-depth interviews with heads of households, key informant interviews, focus group sessions, and document analysis. Thematic and content analysis were used to analyse the data which were classified into the following conflict levels: surface level disputes; an intermediate level involving ongoing conflictual relationships; and a deeper level of conflict rooted in identity. Three key findings were generated. Firstly, a substantial number of long-standing disputes were recorded during the ten-year period (2007-2016). Most of these disputes were not resolved because they had a long and complicated history which resulted in previous disputes resurfacing whenever a current one arose. Secondly, the history of unresolved conflict resulted in mistrust and failure to find common ground between the parties involved in the conflict. Lastly, the source of the disputes and unresolved conflicts was traced back to the identity level. This means that the antagonistic relationships among the stakeholders spilled over into the labelling and stigmatisation of all the groups involved in wildlife management. Thus, conflict between people and wildlife in Chapoto Ward was demonstrated to be a complex issue and underlain by HHC. These findings support the new line of thinking that HWC should not be viewed as simply a problem between people and wildlife but as a conflict between stakeholders with divergent views over wildlife management which manifests as HHC. Furthermore, the degree of polarisation between groups is substantial. In light of these findings, four major conclusions are drawn. Firstly, is the need to shift from narrowly focusing on the proximate conflicts between people and wildlife, to fully understand the complexity of conflict in order to arrive at solutions that successfully mitigate conflict between people and wildlife, and to address the underlying and deep-rooted conflict between stakeholders with divergent wildlife management goals. Secondly, the need for concerted efforts to ensure the involvement of all stakeholders, including women, in wildlife management and conservation by developing structures that enhance active participation of the local people in decision-making, v which promotes the success of conservation initiatives. Thirdly, the need to address the underlying and deep-rooted conflicts over wildlife management by building positive relationships and trust between stakeholders through the holding of regular capacity building workshops based on a more respectful and inclusive process. Fourthly, is the need to consider the interests of both ethnic groups, namely the Doma and the Chikunda by gathering information on the preferences of the identity groups in order to increase cooperation among them. Overall, the thesis introduces a new lens through which one can clearly understand the complexity of the conflict between people and wildlife.
- Full Text:
- Date Issued: 2018
Structural analysis of synthetic ferrihydrite nanoparticles and its reduction in a hydrogen atmosphere
- Authors: Masina, Colani John
- Date: 2013
- Subjects: Ferric hydroxides , Minerals -- Analysis , Nanoparticles
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10555 , http://hdl.handle.net/10948/d1020796
- Description: Ferrihydrite (FHYD), a nanocrystalline material has long been described as a poorly crystalline disordered mineral mainly due to its small crystal size which is typically 2−6 𝑛𝑚. The three-dimensional structure of the mineral has long been described by a multi-phase structural model that consists of Fe3+ only in octahedral (Oh) coordination. In this model ferrihydrite is described as a mixture of two major phases (akaganeite/goethite-like f-phase and feroxyhite-like d-phase) and a minor ultradispersed nanohematite phase. This model has been recently challenged and a new, single-phase model was proposed, having a basic structural motif closely related to the Baker-Figgs δ-Keggin cluster and is isostructural with the mineral akdalaite, Al10O14(OH)2. In its ideal form, the proposed new structure of FHYD consist of 80 % Oh and 20 % tetrahedral (Td) Fe3+ polyhedra which can be adequately described by a single-domain model with the hexagonal spacegroup 𝑃63𝑚𝑐 and unit cell dimensions 𝑎=5.95 Å and 𝑐=9.06 Å. In this study, nanoparticles of 2-line FHYD (FHYD2), 2-line FHYD deposited onto SiO2 (FHYD2/SiO2) and 6-line FHYD (FHYD6) synthesised using rapid hydrolysis of Fe(NO3)3.9H2O solutions were characterized using X-ray diffraction (XRD), Raman spectroscopy, transmission electron microscopy (TEM), Mössbauer spectroscopy (MS) as well as magnetization and magnetic susceptibility measurements. The coordination environment of iron atoms in the structure of FHYD was investigated using TEM and MS. The thermal transformation of FHYD nanoparticles was monitored through changes in the magnetization as a function of temperature and the reduction behaviour in hydrogen environment was studied using temperature programmed reduction (TPR), in-situ XRD and MS. Electron diffraction, TEM/ scanning TEM (STEM) imaging, and electron energy loss (EELS) measurements were carried out on three different microscopes viz. JEOL JEM-2100 LaB6 TEM, aberration corrected Schottky-FEG JEOL JEM-ARM200F HRTEM and cold-FEG Zeiss SESAM TEM. EELS studies were concentrated mainly on the iron 𝐿-edge of FHYD and iron oxides reference spectra with well known crystal structures. The iron oxide Fe 𝐿-edge is usually characterized by two intense sharp peaks termed “white lines”. The fine structures introduced by the crystal field effect on the 𝐿- edge contain information that is highly specific to the Fe3+ site symmetry.
- Full Text:
- Date Issued: 2013
- Authors: Masina, Colani John
- Date: 2013
- Subjects: Ferric hydroxides , Minerals -- Analysis , Nanoparticles
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10555 , http://hdl.handle.net/10948/d1020796
- Description: Ferrihydrite (FHYD), a nanocrystalline material has long been described as a poorly crystalline disordered mineral mainly due to its small crystal size which is typically 2−6 𝑛𝑚. The three-dimensional structure of the mineral has long been described by a multi-phase structural model that consists of Fe3+ only in octahedral (Oh) coordination. In this model ferrihydrite is described as a mixture of two major phases (akaganeite/goethite-like f-phase and feroxyhite-like d-phase) and a minor ultradispersed nanohematite phase. This model has been recently challenged and a new, single-phase model was proposed, having a basic structural motif closely related to the Baker-Figgs δ-Keggin cluster and is isostructural with the mineral akdalaite, Al10O14(OH)2. In its ideal form, the proposed new structure of FHYD consist of 80 % Oh and 20 % tetrahedral (Td) Fe3+ polyhedra which can be adequately described by a single-domain model with the hexagonal spacegroup 𝑃63𝑚𝑐 and unit cell dimensions 𝑎=5.95 Å and 𝑐=9.06 Å. In this study, nanoparticles of 2-line FHYD (FHYD2), 2-line FHYD deposited onto SiO2 (FHYD2/SiO2) and 6-line FHYD (FHYD6) synthesised using rapid hydrolysis of Fe(NO3)3.9H2O solutions were characterized using X-ray diffraction (XRD), Raman spectroscopy, transmission electron microscopy (TEM), Mössbauer spectroscopy (MS) as well as magnetization and magnetic susceptibility measurements. The coordination environment of iron atoms in the structure of FHYD was investigated using TEM and MS. The thermal transformation of FHYD nanoparticles was monitored through changes in the magnetization as a function of temperature and the reduction behaviour in hydrogen environment was studied using temperature programmed reduction (TPR), in-situ XRD and MS. Electron diffraction, TEM/ scanning TEM (STEM) imaging, and electron energy loss (EELS) measurements were carried out on three different microscopes viz. JEOL JEM-2100 LaB6 TEM, aberration corrected Schottky-FEG JEOL JEM-ARM200F HRTEM and cold-FEG Zeiss SESAM TEM. EELS studies were concentrated mainly on the iron 𝐿-edge of FHYD and iron oxides reference spectra with well known crystal structures. The iron oxide Fe 𝐿-edge is usually characterized by two intense sharp peaks termed “white lines”. The fine structures introduced by the crystal field effect on the 𝐿- edge contain information that is highly specific to the Fe3+ site symmetry.
- Full Text:
- Date Issued: 2013
Efficacy of two medical plant extracts and metformin in the prevention of diet induced fatty liver
- Tshidino, Shonisani Cathphonia
- Authors: Tshidino, Shonisani Cathphonia
- Date: 2014
- Subjects: Plant Extracts -- Therapeutic use , Medicinal plants
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/9066 , vital:26461
- Description: Non‐alcoholic fatty liver diseases (NAFLD) is manifested in the absent of alcohol abuse. This disease is the major cause of liver failure and death among adults and children worldwide, including South Africa. Its increasing prevalence urges the need of therapeutic intervention. The main objectives of this study were to investigate the following: (1) The effect of 38.9% high fat diet (HFD)‐induced insulin resistance and fatty liver in male Wistar rats, (2) The efficacy of aqueous extracts from Sutherlandia frutescens leaves and Prunus africana bark and metformin in the treatment of HFDinduced insulin resistance and fatty liver. Male Wistar rats were fed on HFD (the HF group) or normal rat chow (the LF group) for 12 weeks. Even though the HFD‐fed rats had developed insulin resistance by week 12, fatty liver developed by week 16. After week 12, the HF group was divided into four groups of 6‐7 rats each and three of those groups were gavaged with either 0.125 mg P. africana extract/kg bwt/day (the HF+Pa group) or 50 mg S. frutescens extract kg bwt/day (the HF+Sf group) or 16 mg metformin/ kg bwt/day (HF+Met group), while kept on the same diet for an additional of 4 weeks, to investigate whether two medicinal plant extracts and metformin can prevent HFD to induce fatty liver or not. After 16 weeks, the liver histological images revealed that the HF group developed fatty liver in the form of both microsteatosis and macrosteatosis. Fatty liver was confirmed by significant increased liver total lipid (TL) and activities of glucose‐6‐phosphate dehydrogenase (cG6PD) and xanthine oxidase (XO), mitochondrial NADH oxidase (mNOX) and by a decrease (P<0.05) in the activities of the homogenate superoxide dismutase (hSOD) and mitochondrial complex II in the HF group, when compared to the LF group. Since the activities of mCS and cACL enzymes were not changed in the HF group, hence increased cG6PD activity in the HF group indicates that there was increased NADPH demand for lipid accumulation from activated NEFAs taken up by the liver from circulation and for maintenance of the NADPH‐dependent antioxidants and oxidants, respectively. The obtained data also show that mitochondria of the HFD‐fed rats adapted to an increase in energy availability, thereby compensation through decreasing complex II activity, to allow electron flux from β‐oxidation to respiratory chain in the HF group. Liver TL content was significantly decreased in the rats treated with metformin and P. africana extract, but not in the rats treated with S. frutescens when compared to the HF group (P < 0.05). However, the TL content remained >5% per liver weight in all treated groups. The present study demonstrates that these two plant extracts and metformin have different glucogenic and lipogenic effects from that presented by HFD alone when compared to the LFD alone. In conclusion, metformin and P. africana extract can attenuate HFD‐induced fatty liver without changing the dietary habits. Hence S. frutescens extract is less effective in the prevention of HFD‐induced fatty liver. A change in the dietary habits is recommended to be considered during the use of these three remedies in the treatment of HFD‐induced insulin resistance and fatty liver. All three treatments enhanced antioxidant capacity, and may improve insulin resistance and fatty liver mediated by the present HFD through different mechanism of actions in the liver.
- Full Text:
- Date Issued: 2014
- Authors: Tshidino, Shonisani Cathphonia
- Date: 2014
- Subjects: Plant Extracts -- Therapeutic use , Medicinal plants
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/9066 , vital:26461
- Description: Non‐alcoholic fatty liver diseases (NAFLD) is manifested in the absent of alcohol abuse. This disease is the major cause of liver failure and death among adults and children worldwide, including South Africa. Its increasing prevalence urges the need of therapeutic intervention. The main objectives of this study were to investigate the following: (1) The effect of 38.9% high fat diet (HFD)‐induced insulin resistance and fatty liver in male Wistar rats, (2) The efficacy of aqueous extracts from Sutherlandia frutescens leaves and Prunus africana bark and metformin in the treatment of HFDinduced insulin resistance and fatty liver. Male Wistar rats were fed on HFD (the HF group) or normal rat chow (the LF group) for 12 weeks. Even though the HFD‐fed rats had developed insulin resistance by week 12, fatty liver developed by week 16. After week 12, the HF group was divided into four groups of 6‐7 rats each and three of those groups were gavaged with either 0.125 mg P. africana extract/kg bwt/day (the HF+Pa group) or 50 mg S. frutescens extract kg bwt/day (the HF+Sf group) or 16 mg metformin/ kg bwt/day (HF+Met group), while kept on the same diet for an additional of 4 weeks, to investigate whether two medicinal plant extracts and metformin can prevent HFD to induce fatty liver or not. After 16 weeks, the liver histological images revealed that the HF group developed fatty liver in the form of both microsteatosis and macrosteatosis. Fatty liver was confirmed by significant increased liver total lipid (TL) and activities of glucose‐6‐phosphate dehydrogenase (cG6PD) and xanthine oxidase (XO), mitochondrial NADH oxidase (mNOX) and by a decrease (P<0.05) in the activities of the homogenate superoxide dismutase (hSOD) and mitochondrial complex II in the HF group, when compared to the LF group. Since the activities of mCS and cACL enzymes were not changed in the HF group, hence increased cG6PD activity in the HF group indicates that there was increased NADPH demand for lipid accumulation from activated NEFAs taken up by the liver from circulation and for maintenance of the NADPH‐dependent antioxidants and oxidants, respectively. The obtained data also show that mitochondria of the HFD‐fed rats adapted to an increase in energy availability, thereby compensation through decreasing complex II activity, to allow electron flux from β‐oxidation to respiratory chain in the HF group. Liver TL content was significantly decreased in the rats treated with metformin and P. africana extract, but not in the rats treated with S. frutescens when compared to the HF group (P < 0.05). However, the TL content remained >5% per liver weight in all treated groups. The present study demonstrates that these two plant extracts and metformin have different glucogenic and lipogenic effects from that presented by HFD alone when compared to the LFD alone. In conclusion, metformin and P. africana extract can attenuate HFD‐induced fatty liver without changing the dietary habits. Hence S. frutescens extract is less effective in the prevention of HFD‐induced fatty liver. A change in the dietary habits is recommended to be considered during the use of these three remedies in the treatment of HFD‐induced insulin resistance and fatty liver. All three treatments enhanced antioxidant capacity, and may improve insulin resistance and fatty liver mediated by the present HFD through different mechanism of actions in the liver.
- Full Text:
- Date Issued: 2014
Nonlinear effects with a focus on cross phase modulation and its impact on wavelength division multiplexing optical fibre networks
- Gamatham, Romeo Reginald Gunther
- Authors: Gamatham, Romeo Reginald Gunther
- Date: 2013
- Subjects: Wavelength division multiplexing , Optical communications , Fiber optics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/6302 , vital:21071
- Description: The demand for faster data transmission is ever increasing. Wavelength division multiplexing (WDM) presents as a viable solution to increase the data transmission rate significantly. WDM systems are based on the ability to transmit multiple wavelengths simultaneously down the fibre. Unlike time division multiplexing (TDM) systems, WDM systems do not increase the data transfer by increasing the transmission rate of a single channel. In WDM systems the data rate per channel remains the same, only multiple channels carry data across the link. Dense wavelength division multiplexing (DWDM) promises even more wavelengths packed together in the same fibre. This multiplication of channels increases the bandwidth capacity rapidly. Networks are looking into making use of technology that will ensure no electronic signal regeneration at any point within the DWDM network. Examples are; reconfigurable optical add/drop multiplexers (ROADM) and optical cross connect (OXC) units. These components essentially enable network operators to split, combine and multiplex optical signals carried by optical fibre. WDM allows network operators to increase the capacity of existing networks without expensive re-cabling. This provides networks with the flexibility to be upgraded to larger bandwidths and for reconfiguration of network services. Further, WDM technology opens up an opportunity of marketing flexibility to network operators, where operators not only have the option to rent out cables and fibres but wavelengths as well. Cross phase modulation (XPM) poses a problem to WDM networks. The refractive index experienced by a neighbouring optical signal, not only depends on the signal’s intensity but on the intensity of the co-propagating signal as well. This effect leads to a phase change and is known as XPM. This work investigates the characteristics of XPM. It is shown that, in a two channel WDM network, a probe signal’s SOP can be steered by controlling a high intensity pump signal’s SOP. This effect could be applied to make a wavelength converter. Experimental results show that the degree of polarization (DOP) of a probe signal degrades according to a mathematical model found in literature. The pump and probe signals are shown to experience maximum interaction, for orthogonal probe-pump SOP vector orientations. This may be problematic to polarization mode dispersion compensators. Additionally, experimental results point out that the SOP of a probe signal is much more active in the presence of a high intensity pump, as compared to the single signal transmission scenario.
- Full Text:
- Date Issued: 2013
- Authors: Gamatham, Romeo Reginald Gunther
- Date: 2013
- Subjects: Wavelength division multiplexing , Optical communications , Fiber optics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/6302 , vital:21071
- Description: The demand for faster data transmission is ever increasing. Wavelength division multiplexing (WDM) presents as a viable solution to increase the data transmission rate significantly. WDM systems are based on the ability to transmit multiple wavelengths simultaneously down the fibre. Unlike time division multiplexing (TDM) systems, WDM systems do not increase the data transfer by increasing the transmission rate of a single channel. In WDM systems the data rate per channel remains the same, only multiple channels carry data across the link. Dense wavelength division multiplexing (DWDM) promises even more wavelengths packed together in the same fibre. This multiplication of channels increases the bandwidth capacity rapidly. Networks are looking into making use of technology that will ensure no electronic signal regeneration at any point within the DWDM network. Examples are; reconfigurable optical add/drop multiplexers (ROADM) and optical cross connect (OXC) units. These components essentially enable network operators to split, combine and multiplex optical signals carried by optical fibre. WDM allows network operators to increase the capacity of existing networks without expensive re-cabling. This provides networks with the flexibility to be upgraded to larger bandwidths and for reconfiguration of network services. Further, WDM technology opens up an opportunity of marketing flexibility to network operators, where operators not only have the option to rent out cables and fibres but wavelengths as well. Cross phase modulation (XPM) poses a problem to WDM networks. The refractive index experienced by a neighbouring optical signal, not only depends on the signal’s intensity but on the intensity of the co-propagating signal as well. This effect leads to a phase change and is known as XPM. This work investigates the characteristics of XPM. It is shown that, in a two channel WDM network, a probe signal’s SOP can be steered by controlling a high intensity pump signal’s SOP. This effect could be applied to make a wavelength converter. Experimental results show that the degree of polarization (DOP) of a probe signal degrades according to a mathematical model found in literature. The pump and probe signals are shown to experience maximum interaction, for orthogonal probe-pump SOP vector orientations. This may be problematic to polarization mode dispersion compensators. Additionally, experimental results point out that the SOP of a probe signal is much more active in the presence of a high intensity pump, as compared to the single signal transmission scenario.
- Full Text:
- Date Issued: 2013
Probing the binding sites of novel 2-substituted imidazole-4,5-dicarboxylic acids : Towards new imidazole-based drugs
- Authors: Clark, Candyce Raine
- Date: 2021
- Subjects: Heterocyclic compounds Coordination compounds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/50848 , vital:42957
- Description: A series of benzimidazole and imidazole-4,5-dicarboxylic acids were prepared using known and adapted protocols. Novel ligands synthesised in this study include 2-tert-butyl-benzimidazole, 2-tert-butyl-imidazole-4,5-dicarboxylic acid, an intermediate in the synthesis of 1,2- bis(2-benzimidazyl)-1,2,-dihydroxyethane and 2-(2-hydroxyphenyl)-benzimidazole with a salicylic acid co-crystallisate. All ligands prepared were reacted with metal salt solutions in order to prepare metal coordination compounds. Complexes with Cu(II), Ag(I), Mn(II), Ni(II) and Cd(II) ions and 2-phenyl-imidazole-4,5-dicarboxylic acid were prepared, as well as Cu(II) and Mn(II) with 2-trifluoro-methyl-imidazole-4,5-dicarboxylic acid and Cu(II) ions with 2-(2- hydroxyphenyl)-benzimidazole. The ligands and complexes were characterised by means of single-crystal X-ray diffraction studies, NMR analysis, UV spectrophotometric analysis and IR spectroscopy. DFT studies were carried out for selected ligands in order to provide theoretical values for comparison. Antimicrobial studies were performed on some of the ligands and complexes and these results show promise for the future development of new imidazole-based drugs.
- Full Text:
- Date Issued: 2021
- Authors: Clark, Candyce Raine
- Date: 2021
- Subjects: Heterocyclic compounds Coordination compounds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/50848 , vital:42957
- Description: A series of benzimidazole and imidazole-4,5-dicarboxylic acids were prepared using known and adapted protocols. Novel ligands synthesised in this study include 2-tert-butyl-benzimidazole, 2-tert-butyl-imidazole-4,5-dicarboxylic acid, an intermediate in the synthesis of 1,2- bis(2-benzimidazyl)-1,2,-dihydroxyethane and 2-(2-hydroxyphenyl)-benzimidazole with a salicylic acid co-crystallisate. All ligands prepared were reacted with metal salt solutions in order to prepare metal coordination compounds. Complexes with Cu(II), Ag(I), Mn(II), Ni(II) and Cd(II) ions and 2-phenyl-imidazole-4,5-dicarboxylic acid were prepared, as well as Cu(II) and Mn(II) with 2-trifluoro-methyl-imidazole-4,5-dicarboxylic acid and Cu(II) ions with 2-(2- hydroxyphenyl)-benzimidazole. The ligands and complexes were characterised by means of single-crystal X-ray diffraction studies, NMR analysis, UV spectrophotometric analysis and IR spectroscopy. DFT studies were carried out for selected ligands in order to provide theoretical values for comparison. Antimicrobial studies were performed on some of the ligands and complexes and these results show promise for the future development of new imidazole-based drugs.
- Full Text:
- Date Issued: 2021
Exploring interventions for participation of emerging farmers in the Eastern Cape ostrich-industry supply chain
- Authors: Pittaway, Timothy
- Date: 2013
- Subjects: Farmers -- South Africa -- Eastern Cape , Ostrich products industry -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10596 , http://hdl.handle.net/10948/d1021008
- Description: The changing agricultural environment (dualistic agricultural landscape, land reform programme, market liberalisation and globalisation) has caused emerging ostrich farmers to become increasingly isolated. Governmental agriculture reforms and public sector interventions have been insufficient to address all the challenges faced by rural ostrich farmers in the Eastern Cape. Participation in the ostrich supply chain for emerging farmers in the Eastern Cape is currently unsustainable as a result of avian influenza, control and registration protocols for ostriches (VPN04), structural barriers in marketing, technical constraints and a lack of market participation. People in the rural areas of the Eastern Cape are challenged by inferior infrastructure, poor site conditions, low earnings, poor access to health services and unreliable water sources. The marginal conditions and prevalent complexities in which agriculture is practised require costly resource intervention. Intensive ostrich production necessitates continuous genetic improvement, methodical record keeping, intensive egg incubation methods and highmaintenance chick rearing and ostrich handling while minimising feed costs throughout this process. Rural farmers have not embraced ostrich farming in the same way as they have done with other livestock farming because it does not offer the anthropological functions that traditional livestock farming provides. The ostrich supply chain requires a wide range of activities to bring products to the final consumer. The worth of ostrich production lies mainly in the higher returns which are achieved only through the export markets. Today the ostrich industry has become vulnerable to market cannibalism, a lack of market development, unregulated numbers of ostriches and recurring international meat bans. The deregulation of the ostrich single-channel marketing system had a substantial effect on the value chain on which farmers depended for market access and market protection. As the majority of ostrich products are being exported to the European Union, the role of intermediary agencies is becoming an important factor influencing entry into the high-end markets. This agent structure that represents the South African ostrich industry is vital for the distribution, market penetration and regulation of the ostrich products. The ostrich leather, which is today the main product line, is primarily used for luxury goods and is susceptible to economic downturn and over-supply. The ostrich meat industry has been severely influenced by outbreaks of avian influenza and processors now pre-heat the meat in order to maintain export. However, this preheating meat facility is only for export produce and available to farmers who conform to VPN04 and have officially registered farms. The relevant South African government departments played a crucial role in identifying avian influenza outbreaks and liaising with the European Union about avian influenza isolation strategies. No previous studies have been conducted on the participation of emerging farmers in the Eastern Cape ostrich-industry supply chain and on the interventions required to address the multiple constraints and forces in this sector. This led to a study with research emphasis on the required capacity for supply-chain participation and the supporting mechanisms that would be required for emerging ostrich farmers to integrate successfully into this supply chain. An exploratory research approach was chosen for the investigation, as no earlier research has been undertaken that could serve as a source of reliable data or reference. A triangulation research methodology using both the quantitative and the qualitative approach was applied. The qualitative research entailed an interpretive approach associated with using grounded theory and content analysis for interpreting data. The comparative case study design was the main qualitative research instrument for the multiple-case studies on emerging ostrich farmers in the Eastern Cape. The study was undertaken at five different sites, namely, the Peddie Ostrich Programme, the Rockhurst Ostrich Programme, the Hlumani Co-operative farm, the Zamukwanda Ostrich farm near Pearston and the Mimosadale Ostrich farm. The quantitative methods were applied to capture all the measurable components and representations of the stakeholders and participants, through interviews, questionnaires and focus group interviews. The quantitative study also included an experimental instrument to measure the capacity of emerging farmer programmes for supply chain participation. It was found that the main driver for three of the case studies pertained to land ownership and that ostrich farming was incidental and only seen as means of activity for income. These three humanitarian farming projects had limited capacity for intensive management requirements for ostrich farming. It was found that the VPN04 bio-security protocols and disease control require a higher level of record keeping for EU markets and is prohibitively expensive for poor rural emerging farmers. The study established that the emerging ostrich farming programmes contributed value to the industry and government rural development in land redistribution programmes, vehicles for reduction of poverty and job creation in the rural areas and by acting as out-grower programmes for commercial farmers. The researcher’s observation is that through strategic interventions the programmes have potential to become commercial players in the industry. The following interventions were recommended from this study: Feasibility study of programmes and review of location selection before initiation. Providing supportive interventions for programme start-ups; Improved selection of programme beneficiaries; Improved structure of emerging farmers’ co-operatives; On-going and appropriate training for emerging ostrich farmers; The role of government and mentors needs to be defined; Reducing feed costs; Establishing programmes linkages to informal markets and facilitating increased self-consumption; Developing new export markets; Alternative finance for the no-income months; Alternative marketing channels to export markets; Representation of emerging farmers in the ostrich-industry leadership structures.
- Full Text:
- Date Issued: 2013
- Authors: Pittaway, Timothy
- Date: 2013
- Subjects: Farmers -- South Africa -- Eastern Cape , Ostrich products industry -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10596 , http://hdl.handle.net/10948/d1021008
- Description: The changing agricultural environment (dualistic agricultural landscape, land reform programme, market liberalisation and globalisation) has caused emerging ostrich farmers to become increasingly isolated. Governmental agriculture reforms and public sector interventions have been insufficient to address all the challenges faced by rural ostrich farmers in the Eastern Cape. Participation in the ostrich supply chain for emerging farmers in the Eastern Cape is currently unsustainable as a result of avian influenza, control and registration protocols for ostriches (VPN04), structural barriers in marketing, technical constraints and a lack of market participation. People in the rural areas of the Eastern Cape are challenged by inferior infrastructure, poor site conditions, low earnings, poor access to health services and unreliable water sources. The marginal conditions and prevalent complexities in which agriculture is practised require costly resource intervention. Intensive ostrich production necessitates continuous genetic improvement, methodical record keeping, intensive egg incubation methods and highmaintenance chick rearing and ostrich handling while minimising feed costs throughout this process. Rural farmers have not embraced ostrich farming in the same way as they have done with other livestock farming because it does not offer the anthropological functions that traditional livestock farming provides. The ostrich supply chain requires a wide range of activities to bring products to the final consumer. The worth of ostrich production lies mainly in the higher returns which are achieved only through the export markets. Today the ostrich industry has become vulnerable to market cannibalism, a lack of market development, unregulated numbers of ostriches and recurring international meat bans. The deregulation of the ostrich single-channel marketing system had a substantial effect on the value chain on which farmers depended for market access and market protection. As the majority of ostrich products are being exported to the European Union, the role of intermediary agencies is becoming an important factor influencing entry into the high-end markets. This agent structure that represents the South African ostrich industry is vital for the distribution, market penetration and regulation of the ostrich products. The ostrich leather, which is today the main product line, is primarily used for luxury goods and is susceptible to economic downturn and over-supply. The ostrich meat industry has been severely influenced by outbreaks of avian influenza and processors now pre-heat the meat in order to maintain export. However, this preheating meat facility is only for export produce and available to farmers who conform to VPN04 and have officially registered farms. The relevant South African government departments played a crucial role in identifying avian influenza outbreaks and liaising with the European Union about avian influenza isolation strategies. No previous studies have been conducted on the participation of emerging farmers in the Eastern Cape ostrich-industry supply chain and on the interventions required to address the multiple constraints and forces in this sector. This led to a study with research emphasis on the required capacity for supply-chain participation and the supporting mechanisms that would be required for emerging ostrich farmers to integrate successfully into this supply chain. An exploratory research approach was chosen for the investigation, as no earlier research has been undertaken that could serve as a source of reliable data or reference. A triangulation research methodology using both the quantitative and the qualitative approach was applied. The qualitative research entailed an interpretive approach associated with using grounded theory and content analysis for interpreting data. The comparative case study design was the main qualitative research instrument for the multiple-case studies on emerging ostrich farmers in the Eastern Cape. The study was undertaken at five different sites, namely, the Peddie Ostrich Programme, the Rockhurst Ostrich Programme, the Hlumani Co-operative farm, the Zamukwanda Ostrich farm near Pearston and the Mimosadale Ostrich farm. The quantitative methods were applied to capture all the measurable components and representations of the stakeholders and participants, through interviews, questionnaires and focus group interviews. The quantitative study also included an experimental instrument to measure the capacity of emerging farmer programmes for supply chain participation. It was found that the main driver for three of the case studies pertained to land ownership and that ostrich farming was incidental and only seen as means of activity for income. These three humanitarian farming projects had limited capacity for intensive management requirements for ostrich farming. It was found that the VPN04 bio-security protocols and disease control require a higher level of record keeping for EU markets and is prohibitively expensive for poor rural emerging farmers. The study established that the emerging ostrich farming programmes contributed value to the industry and government rural development in land redistribution programmes, vehicles for reduction of poverty and job creation in the rural areas and by acting as out-grower programmes for commercial farmers. The researcher’s observation is that through strategic interventions the programmes have potential to become commercial players in the industry. The following interventions were recommended from this study: Feasibility study of programmes and review of location selection before initiation. Providing supportive interventions for programme start-ups; Improved selection of programme beneficiaries; Improved structure of emerging farmers’ co-operatives; On-going and appropriate training for emerging ostrich farmers; The role of government and mentors needs to be defined; Reducing feed costs; Establishing programmes linkages to informal markets and facilitating increased self-consumption; Developing new export markets; Alternative finance for the no-income months; Alternative marketing channels to export markets; Representation of emerging farmers in the ostrich-industry leadership structures.
- Full Text:
- Date Issued: 2013
In vitro induction of cell death pathways by artemisia afra extract and isolation of an active compound, isoalantolactone
- Authors: Venables, Luanne
- Date: 2014
- Subjects: Medicinal plants -- South Africa , Cell death
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10363 , http://hdl.handle.net/10948/d1021087
- Description: Artemisia afra is one of the oldest, most well known and widely used traditional medicinal plants in South Africa. It is used to treat many different medical conditions, particularly respiratory and inflammatory ailments. There is no reported evidence of its use for the treatment of cancer but due to its reported cytotoxicity, an investigation of the mode of cell death induced by an ethanol A. afra extract using two cancer cell lines was done. IC50 values of 18.21 and 31.88 μg/mL of ethanol extracts were determined against U937 and HeLa cancer cells, respectively. An IC50 value of the aqueous extract was greater than 250 μg/mL. The ethanol extract was not cytotoxic against confluent control cell lines, Chang Liver and Vero cells. The effect of the cytotoxic ethanol A. afra extract on U937 and HeLa cells and their progression through the cell cycle, apoptosis and mitochondrial membrane potential was investigated. After 12 hours of treatment with A. afra a delay in G2/M phase of the cell cycle was evident. Apoptosis was confirmed using the TUNEL assay for DNA fragmentation, as well as fluorescent staining with annexin V-FITC. Apoptosis was evident with the positive control and A. afra treatment at 24 and 48 hours. JC-1 staining showed a decrease in mitochondrial membrane potential at 24 hours. It was deduced that A. afra ethanol extract induces caspase-dependent apoptosis in a mitochondrial dependent manner. Plants harbour many compounds that are not only useful to the plants but also to mankind. Many metabolites have been isolated from A. afra and their biological activity characterised. Due to observed apoptosis induction, isolation of cytotoxic compounds was done and a new sesquiterpene lactone from A. afra was isolated. Structural elucidation of the compound was done by IR, 1D and 2D NMR, CD and mass spectrometry and it was identified as isoalantolactone. HeLa cancer cells were treated with isoalantolactone and cytotoxicity was exhibited in a dose-dependent manner. A low IC50 value of 8.15 ± 1.16 μM was achieved. This study showed that isoalantolactone is partly responsible for the observed A. afra cytotoxicity. Due to the evidence of G2/M arrest, the anti-mitotic potential and the possible onset of mitotic catastrophe by A. afra and isoalantolactone was investigated. It was evident from various flow cytometric analysis of cyclin B1 and phospho-H3 and confocal microscopy that A. afra does possess anti-mitotic activity by causing hyperpolymerisation of tubulin and cells progress into the mitotic phase where M arrest is experienced. The anti-inflammatory activity of sesquiterpene lactones is well documented; however, the anti-inflammatory activity of A. afra is not. Here, it is reported that the production of NO and COX-2 protein levels in RAW 264.7 cells decrease in the presence of A. afra and isoalantolactone after stimulation with LPS. The activated NF-κB subunit, p65 was also investigated. The results suggest that A. afra and isoalantolactone inhibit p65 activation as a decrease in the activated subunit was evident. Thus, the results indicate that exposure to A. afra and isoalantolactone induces an anti-inflammatory response. In conclusion, this study shows, for the first time, the mechanism of induced apoptosis, the anti-mitotic and anti-inflammatory activity of A. afra and its isolated compound, isoalantolactone. It also proves that although extensive research may have been done on a particular plant, as with A. afra, more can be discovered leading to the identification of new compounds and integration of signalling pathways that can be exploited for the treatment of various diseases and ailments.
- Full Text:
- Date Issued: 2014
- Authors: Venables, Luanne
- Date: 2014
- Subjects: Medicinal plants -- South Africa , Cell death
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10363 , http://hdl.handle.net/10948/d1021087
- Description: Artemisia afra is one of the oldest, most well known and widely used traditional medicinal plants in South Africa. It is used to treat many different medical conditions, particularly respiratory and inflammatory ailments. There is no reported evidence of its use for the treatment of cancer but due to its reported cytotoxicity, an investigation of the mode of cell death induced by an ethanol A. afra extract using two cancer cell lines was done. IC50 values of 18.21 and 31.88 μg/mL of ethanol extracts were determined against U937 and HeLa cancer cells, respectively. An IC50 value of the aqueous extract was greater than 250 μg/mL. The ethanol extract was not cytotoxic against confluent control cell lines, Chang Liver and Vero cells. The effect of the cytotoxic ethanol A. afra extract on U937 and HeLa cells and their progression through the cell cycle, apoptosis and mitochondrial membrane potential was investigated. After 12 hours of treatment with A. afra a delay in G2/M phase of the cell cycle was evident. Apoptosis was confirmed using the TUNEL assay for DNA fragmentation, as well as fluorescent staining with annexin V-FITC. Apoptosis was evident with the positive control and A. afra treatment at 24 and 48 hours. JC-1 staining showed a decrease in mitochondrial membrane potential at 24 hours. It was deduced that A. afra ethanol extract induces caspase-dependent apoptosis in a mitochondrial dependent manner. Plants harbour many compounds that are not only useful to the plants but also to mankind. Many metabolites have been isolated from A. afra and their biological activity characterised. Due to observed apoptosis induction, isolation of cytotoxic compounds was done and a new sesquiterpene lactone from A. afra was isolated. Structural elucidation of the compound was done by IR, 1D and 2D NMR, CD and mass spectrometry and it was identified as isoalantolactone. HeLa cancer cells were treated with isoalantolactone and cytotoxicity was exhibited in a dose-dependent manner. A low IC50 value of 8.15 ± 1.16 μM was achieved. This study showed that isoalantolactone is partly responsible for the observed A. afra cytotoxicity. Due to the evidence of G2/M arrest, the anti-mitotic potential and the possible onset of mitotic catastrophe by A. afra and isoalantolactone was investigated. It was evident from various flow cytometric analysis of cyclin B1 and phospho-H3 and confocal microscopy that A. afra does possess anti-mitotic activity by causing hyperpolymerisation of tubulin and cells progress into the mitotic phase where M arrest is experienced. The anti-inflammatory activity of sesquiterpene lactones is well documented; however, the anti-inflammatory activity of A. afra is not. Here, it is reported that the production of NO and COX-2 protein levels in RAW 264.7 cells decrease in the presence of A. afra and isoalantolactone after stimulation with LPS. The activated NF-κB subunit, p65 was also investigated. The results suggest that A. afra and isoalantolactone inhibit p65 activation as a decrease in the activated subunit was evident. Thus, the results indicate that exposure to A. afra and isoalantolactone induces an anti-inflammatory response. In conclusion, this study shows, for the first time, the mechanism of induced apoptosis, the anti-mitotic and anti-inflammatory activity of A. afra and its isolated compound, isoalantolactone. It also proves that although extensive research may have been done on a particular plant, as with A. afra, more can be discovered leading to the identification of new compounds and integration of signalling pathways that can be exploited for the treatment of various diseases and ailments.
- Full Text:
- Date Issued: 2014
Mathematical requirements for first-year BCOM students at NMMU
- Authors: Walton, Marguerite
- Date: 2009
- Subjects: Business mathematics -- South Africa , Mathematics -- Study and teaching (Higher) -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10502 , http://hdl.handle.net/10948/886 , Business mathematics -- South Africa , Mathematics -- Study and teaching (Higher) -- South Africa
- Description: These studies have focused on identifying the mathematical requirements of first-year BCom students at Nelson Mandela Metropolitan University. The research methodology used in this quantitative study was to make use of interviewing, questionnaire investigation, and document analysis in the form of textbook, test and examination analysis. These methods provided data that fitted into a grounded theory approach. The study concluded by identifying the list of mathematical topics required for the first year of the core subjects in the BCom degree programme. In addition, the study found that learners who study Mathematics in the National Senior Certificate should be able to cope with the mathematical content included in their BCom degree programme, while learners studying Mathematical Literacy would probably need support in some of the areas of mathematics, especially algebra, in order to cope with the mathematical content included in their BCom degree programme. It makes a valuable contribution towards elucidating the mathematical requirements needed to improve the chances of successful BCom degree programme studies at South African universities. It also draws the contours for starting to design an efficient support course for future “at-risk” students who enter higher education studies.
- Full Text:
- Date Issued: 2009
- Authors: Walton, Marguerite
- Date: 2009
- Subjects: Business mathematics -- South Africa , Mathematics -- Study and teaching (Higher) -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10502 , http://hdl.handle.net/10948/886 , Business mathematics -- South Africa , Mathematics -- Study and teaching (Higher) -- South Africa
- Description: These studies have focused on identifying the mathematical requirements of first-year BCom students at Nelson Mandela Metropolitan University. The research methodology used in this quantitative study was to make use of interviewing, questionnaire investigation, and document analysis in the form of textbook, test and examination analysis. These methods provided data that fitted into a grounded theory approach. The study concluded by identifying the list of mathematical topics required for the first year of the core subjects in the BCom degree programme. In addition, the study found that learners who study Mathematics in the National Senior Certificate should be able to cope with the mathematical content included in their BCom degree programme, while learners studying Mathematical Literacy would probably need support in some of the areas of mathematics, especially algebra, in order to cope with the mathematical content included in their BCom degree programme. It makes a valuable contribution towards elucidating the mathematical requirements needed to improve the chances of successful BCom degree programme studies at South African universities. It also draws the contours for starting to design an efficient support course for future “at-risk” students who enter higher education studies.
- Full Text:
- Date Issued: 2009
Isolation, purification and partial characterisation of cancer procoagulant from placental amnion-chorion membranes and its role in angiogenesis inflammation and metastasis
- Authors: Krause, Jason
- Date: 2014
- Subjects: Coagulation , Amnion , Chorion , Metastasis , Inflammation , Neovascularization
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10350 , http://hdl.handle.net/10948/d1020897
- Description: Cancer procoagulant (EC 3.4.22.26) is an enzyme that is derived from tumour and foetal tissue, but not normal tissue. It is a direct activator of factor X and has been isolated from amnion-chorion membranes as well as from extracts and cells from human melanoma. The presence of cancer procoagulant has been associated with the malignant phenotype, as well as having a particularly high activity in metastatic cells. Cancer procoagulant activity is elevated in the serum of early stage breast cancer patients and decreased to normal in the advanced stages of the disease. In this study, cancer procoagulant was successfully isolated from amnion-chorion membranes and purified to homogeneity. The molecular weight of cancer procoagulant was determined using SDS-PAGE and was found to be 68 kDa. Cancer procoagulant was delipidated and it was shown that its activity was increased by the presence of lipids in a dose-dependent manner. Recovery of cancer procoagulant after delipidation is poor, consequently, a larger mass of sample is required to obtain sufficient amounts of delipidated material for N-terminal amino acid analysis. The optimum pH of cancer procoagulant was determined to be pH 8 and its optimal temperature was found to be 50°C. Novel synthetic substrates were designed to assay for cancer procoagulant activity. Currently, 2 potential candidates have been identified, namely, PQVR-AMC and AVSQSKP-AMC. Cancer procoagulant-induced expression of cytokines is differently modulated in the less aggressive MCF-7 cell line as compared to the metastatic and more aggressive MDA-MB-231 cell line. There are marked similarities in the inflammatory response produced by cancer procoagulant in hTERT-HDLEC and MDA-MB-231 cells, which are both associated with migratory capacity. Furthermore, cancer procoagulant-induced PDGF-β expression in hTERT-HDLEC and MDA-MB-231 cells could point to involvement of cancer procoagulant in wound healing and metastatic spread, respectively. Cancer procoagulant induced the motility of MDA-MB-231, MCF-7 and hTERT- cells in vitro in a time- and dose-dependent manner. Together, these results suggest that cancer procoagulant plays a role in the migration of breast cancer cells as well as the migration of endothelial cells.
- Full Text:
- Date Issued: 2014
- Authors: Krause, Jason
- Date: 2014
- Subjects: Coagulation , Amnion , Chorion , Metastasis , Inflammation , Neovascularization
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10350 , http://hdl.handle.net/10948/d1020897
- Description: Cancer procoagulant (EC 3.4.22.26) is an enzyme that is derived from tumour and foetal tissue, but not normal tissue. It is a direct activator of factor X and has been isolated from amnion-chorion membranes as well as from extracts and cells from human melanoma. The presence of cancer procoagulant has been associated with the malignant phenotype, as well as having a particularly high activity in metastatic cells. Cancer procoagulant activity is elevated in the serum of early stage breast cancer patients and decreased to normal in the advanced stages of the disease. In this study, cancer procoagulant was successfully isolated from amnion-chorion membranes and purified to homogeneity. The molecular weight of cancer procoagulant was determined using SDS-PAGE and was found to be 68 kDa. Cancer procoagulant was delipidated and it was shown that its activity was increased by the presence of lipids in a dose-dependent manner. Recovery of cancer procoagulant after delipidation is poor, consequently, a larger mass of sample is required to obtain sufficient amounts of delipidated material for N-terminal amino acid analysis. The optimum pH of cancer procoagulant was determined to be pH 8 and its optimal temperature was found to be 50°C. Novel synthetic substrates were designed to assay for cancer procoagulant activity. Currently, 2 potential candidates have been identified, namely, PQVR-AMC and AVSQSKP-AMC. Cancer procoagulant-induced expression of cytokines is differently modulated in the less aggressive MCF-7 cell line as compared to the metastatic and more aggressive MDA-MB-231 cell line. There are marked similarities in the inflammatory response produced by cancer procoagulant in hTERT-HDLEC and MDA-MB-231 cells, which are both associated with migratory capacity. Furthermore, cancer procoagulant-induced PDGF-β expression in hTERT-HDLEC and MDA-MB-231 cells could point to involvement of cancer procoagulant in wound healing and metastatic spread, respectively. Cancer procoagulant induced the motility of MDA-MB-231, MCF-7 and hTERT- cells in vitro in a time- and dose-dependent manner. Together, these results suggest that cancer procoagulant plays a role in the migration of breast cancer cells as well as the migration of endothelial cells.
- Full Text:
- Date Issued: 2014
Characterisation of performance limiting defects in photovoltaic devices using electroluminescence and related techniques
- Authors: Crozier, Jacqueline Louise
- Date: 2015
- Subjects: Photovoltaic cells Solar cells Photovoltaic power systems
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11004 , vital:26866
- Description: Solar cells allow the energy from the sun to be converted into electrical energy; this makes solar energy an environmentally friendly, sustainable alternative to fossil fuel energy sources. Solar cells are connected together in a photovoltaic (PV) module to provide the higher current, voltage and power outputs necessary for electrical applications. However, the performance of PV modules can limited by the degradation and defects. PV modules can be characterised using various opto-electronic techniques, each providing information about the performance of the module. The current-voltage (I-V) characteristic curve of a module being the most commonly used characterisation technique. The I-V curve is typically measured in outdoor, fully illuminated, conditions. This allows performance parameters such as short circuit current (ISC), open circuit voltage (VOC) and maximum power (PMAX) to be determined. However, it can be difficult to determine the root cause of the performance drop from the I-V curve alone. Electroluminescence (EL) is a module characterisation technique that allows defects and failures in PV modules to be successfully identified. This study investigates the characterisation of solar cells and photovoltaic modules using EL. EL occurs when a solar cell or module is forward biased and the injected electron-hole pairs recombine radiatively. The intensity of the emitted EL is related the applied voltage and the material properties. EL imaging is a useful characterisation technique in identifying module defects and failures. Defects such as micro-cracks, broken contact fingers and fractures are detected in EL images as well as material features such as grain boundaries. The common defects in crystalline silicon are catalogued and the possible causes are discussed. An experimental setup was developed in order to systematically take a high resolution EL image of every cell in the module and record the applied voltage and current. This produces a very detailed, clear, image of each cell with a pixel size in the micrometre range. This process is time consuming to acquire an EL image of an entire module so alternatively a different setup can be used and an EL image of a whole module can be captured in a single frame with an increased pixel size in the millimetre range. For EL imaging a silicon charge-coupled device (CCD) camera was used because it has very good spatial resolution however this sensor is only sensitive to wavelength in the range of 300-1200 nm. There is an overlap in wavelengths from about 900 to 1100 nm allowing the EL emitted from silicon solar cells to be detected. In conjunction with the high-resolution EL system an image processing program was developed to crop, adjust and align the images so only the relevant cell was included. This program also automatically detects certain defects that have a regular shape. Micro-cracks, broken fingers and striation rings are automatically identified. The program has an adjustable sensitivity to identify small or large defects. Defective cells are distinguished from undamaged cells by comparing the binary images to the ideal, undamaged cell. The current-voltage curves and the performance parameters of modules were compared with the EL images in order to discuss and identify power limiting defects. Features that remove significant portions of the cell from electrical contact such as micro-cracks are shown to have a larger effect of the performance of the module. Other features such as broken contact fingers, contact forming failures and striation rings do not significantly lower the performance of the module. Thus an understanding of how different features affect the module performance is important in order to correctly interpret the EL results. The intensity of the luminescence emitted is related to the applied voltage and the quantum efficiency of the cell material. The spectrum of the emitted luminescence was modelled and related to the recombination properties of the cell such as surface recombination velocity and minority carrier diffusion length/lifetime. In this study the emitted spectrum was modelled and the effects of recombination properties of the cell on the emitted spectrum were examined. The spectrum of the detected EL was modelled, dependent on the sensitivity of the camera, the transmission of the filters and the emitted photon flux. The integration of short-pass filters into the experimental setup in order to isolate short-wavelength luminescence was discussed. There is a proportional relationship between the intensity of the emitted EL and the local junction voltage. Resistive losses like series and shunt resistances lower the applied voltage and thus affect the EL image. The voltage dependence was assessed by comparing EL images taken at different applied biases. Analysis of the variation in EL intensity with voltage was successful in determining the origin of certain features in an EL image. Certain defects, those that are related to series resistance or shunting are highly voltage dependent. When a feature has little or no dependence on voltage then the defect could be in the laminate layers and not in the cell material. The results of this study allow for in-depth analysis of the defects found in PV modules using the high resolution EL imaging system and the image processing routine. The development of an image processing routine allows the interpretation of the EL image to be done automatically, resulting in a faster and more efficient process. By understanding the defects visible in the EL image, the test is more meaningful and allows the results to be used to predict module performance and potential failures.
- Full Text:
- Date Issued: 2015
- Authors: Crozier, Jacqueline Louise
- Date: 2015
- Subjects: Photovoltaic cells Solar cells Photovoltaic power systems
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11004 , vital:26866
- Description: Solar cells allow the energy from the sun to be converted into electrical energy; this makes solar energy an environmentally friendly, sustainable alternative to fossil fuel energy sources. Solar cells are connected together in a photovoltaic (PV) module to provide the higher current, voltage and power outputs necessary for electrical applications. However, the performance of PV modules can limited by the degradation and defects. PV modules can be characterised using various opto-electronic techniques, each providing information about the performance of the module. The current-voltage (I-V) characteristic curve of a module being the most commonly used characterisation technique. The I-V curve is typically measured in outdoor, fully illuminated, conditions. This allows performance parameters such as short circuit current (ISC), open circuit voltage (VOC) and maximum power (PMAX) to be determined. However, it can be difficult to determine the root cause of the performance drop from the I-V curve alone. Electroluminescence (EL) is a module characterisation technique that allows defects and failures in PV modules to be successfully identified. This study investigates the characterisation of solar cells and photovoltaic modules using EL. EL occurs when a solar cell or module is forward biased and the injected electron-hole pairs recombine radiatively. The intensity of the emitted EL is related the applied voltage and the material properties. EL imaging is a useful characterisation technique in identifying module defects and failures. Defects such as micro-cracks, broken contact fingers and fractures are detected in EL images as well as material features such as grain boundaries. The common defects in crystalline silicon are catalogued and the possible causes are discussed. An experimental setup was developed in order to systematically take a high resolution EL image of every cell in the module and record the applied voltage and current. This produces a very detailed, clear, image of each cell with a pixel size in the micrometre range. This process is time consuming to acquire an EL image of an entire module so alternatively a different setup can be used and an EL image of a whole module can be captured in a single frame with an increased pixel size in the millimetre range. For EL imaging a silicon charge-coupled device (CCD) camera was used because it has very good spatial resolution however this sensor is only sensitive to wavelength in the range of 300-1200 nm. There is an overlap in wavelengths from about 900 to 1100 nm allowing the EL emitted from silicon solar cells to be detected. In conjunction with the high-resolution EL system an image processing program was developed to crop, adjust and align the images so only the relevant cell was included. This program also automatically detects certain defects that have a regular shape. Micro-cracks, broken fingers and striation rings are automatically identified. The program has an adjustable sensitivity to identify small or large defects. Defective cells are distinguished from undamaged cells by comparing the binary images to the ideal, undamaged cell. The current-voltage curves and the performance parameters of modules were compared with the EL images in order to discuss and identify power limiting defects. Features that remove significant portions of the cell from electrical contact such as micro-cracks are shown to have a larger effect of the performance of the module. Other features such as broken contact fingers, contact forming failures and striation rings do not significantly lower the performance of the module. Thus an understanding of how different features affect the module performance is important in order to correctly interpret the EL results. The intensity of the luminescence emitted is related to the applied voltage and the quantum efficiency of the cell material. The spectrum of the emitted luminescence was modelled and related to the recombination properties of the cell such as surface recombination velocity and minority carrier diffusion length/lifetime. In this study the emitted spectrum was modelled and the effects of recombination properties of the cell on the emitted spectrum were examined. The spectrum of the detected EL was modelled, dependent on the sensitivity of the camera, the transmission of the filters and the emitted photon flux. The integration of short-pass filters into the experimental setup in order to isolate short-wavelength luminescence was discussed. There is a proportional relationship between the intensity of the emitted EL and the local junction voltage. Resistive losses like series and shunt resistances lower the applied voltage and thus affect the EL image. The voltage dependence was assessed by comparing EL images taken at different applied biases. Analysis of the variation in EL intensity with voltage was successful in determining the origin of certain features in an EL image. Certain defects, those that are related to series resistance or shunting are highly voltage dependent. When a feature has little or no dependence on voltage then the defect could be in the laminate layers and not in the cell material. The results of this study allow for in-depth analysis of the defects found in PV modules using the high resolution EL imaging system and the image processing routine. The development of an image processing routine allows the interpretation of the EL image to be done automatically, resulting in a faster and more efficient process. By understanding the defects visible in the EL image, the test is more meaningful and allows the results to be used to predict module performance and potential failures.
- Full Text:
- Date Issued: 2015
Development of a bulbine frutescens and carpobrotus edulis cream in collaboration with african traditional healers of the Nelson Mandela Metropole
- Authors: Keele, Mbali Zamathiyane
- Date: 2014
- Subjects: Drug development -- South Africa -- Port Elizabeth , Healers -- South Africa -- Port Elizabeth , Traditional medicine -- South Africa -- Port Elizabeth , Physicians -- Health -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10358 , http://hdl.handle.net/10948/d1021016
- Description: Collaborations between researchers and African traditional healers on medicinal plants need to go beyond the flow of information from African traditional healers to researchers. Mutual beneficiation wherein African traditional healers reap rewards due to the information they possess is necessary and has been legislated in South Africa. The manner in which such beneficiation occurs and how it will be distributed should be subject to negotiation between (a) the researchers and holders of indigenous knowledge and (b) among holders of indigenous knowledge themselves. Beneficiation can be in the form of access to information, monetary or through shares in commercialised products, amongst others. African traditional healers involved in the collaboration with researchers of the Department of Biochemistry and Microbiology and the Department of Pharmacy at the Nelson Mandela Metropolitan University beneficiated by having access to knowledge and medicinal plants cultivated in the medicinal garden. Beneficiation was expected to extend to monetary gains from the sale of sewn garments and plants from a medicinal plants nursery which was to be developed and from a herbal topical product which was also to be developed. The aim of this research project was to develop a wound healing herbal cream consisting of Bulbine frutescens and Carpobrotus edulis as active ingredients. B. frutescens demonstrated better wound closure properties when compared to C. edulis and the combined extracts. The scratch assay wound was completely closed after 24 hours at B. frutescens concentrations of 5 μg/ml and 10 μg/ml. B. frutescens was more toxic to 3t3-L1 cells than C. edulis, but it was less toxic than the combined extracts. None of the extracts were toxic to Vero cells and the combined extracts significantly promoted their proliferation. Antibacterial activity of all the extracts was low. C. edulis showed antiviral activity against human herpes simplex virus 1 at 62.5, 125 and 250 μg/ml, while the combined extracts were active at 250 μg/ml. The combined extracts exhibited synergistic antioxidant activity. A reverse phase, gradient, high performance liquid chromatography method was developed and validated and used to conduct quality control tests on the extracts and the finished product. It was concluded that the use of whole chromatographic data instead of common peaks data is best for analysis of medicinal plants. The cream that was developed used buffered cream as the base and was stable at 25 °C/65 percent RH for one month with regard to organoleptic and rheological properties and microbial preservation.
- Full Text:
- Date Issued: 2014
- Authors: Keele, Mbali Zamathiyane
- Date: 2014
- Subjects: Drug development -- South Africa -- Port Elizabeth , Healers -- South Africa -- Port Elizabeth , Traditional medicine -- South Africa -- Port Elizabeth , Physicians -- Health -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10358 , http://hdl.handle.net/10948/d1021016
- Description: Collaborations between researchers and African traditional healers on medicinal plants need to go beyond the flow of information from African traditional healers to researchers. Mutual beneficiation wherein African traditional healers reap rewards due to the information they possess is necessary and has been legislated in South Africa. The manner in which such beneficiation occurs and how it will be distributed should be subject to negotiation between (a) the researchers and holders of indigenous knowledge and (b) among holders of indigenous knowledge themselves. Beneficiation can be in the form of access to information, monetary or through shares in commercialised products, amongst others. African traditional healers involved in the collaboration with researchers of the Department of Biochemistry and Microbiology and the Department of Pharmacy at the Nelson Mandela Metropolitan University beneficiated by having access to knowledge and medicinal plants cultivated in the medicinal garden. Beneficiation was expected to extend to monetary gains from the sale of sewn garments and plants from a medicinal plants nursery which was to be developed and from a herbal topical product which was also to be developed. The aim of this research project was to develop a wound healing herbal cream consisting of Bulbine frutescens and Carpobrotus edulis as active ingredients. B. frutescens demonstrated better wound closure properties when compared to C. edulis and the combined extracts. The scratch assay wound was completely closed after 24 hours at B. frutescens concentrations of 5 μg/ml and 10 μg/ml. B. frutescens was more toxic to 3t3-L1 cells than C. edulis, but it was less toxic than the combined extracts. None of the extracts were toxic to Vero cells and the combined extracts significantly promoted their proliferation. Antibacterial activity of all the extracts was low. C. edulis showed antiviral activity against human herpes simplex virus 1 at 62.5, 125 and 250 μg/ml, while the combined extracts were active at 250 μg/ml. The combined extracts exhibited synergistic antioxidant activity. A reverse phase, gradient, high performance liquid chromatography method was developed and validated and used to conduct quality control tests on the extracts and the finished product. It was concluded that the use of whole chromatographic data instead of common peaks data is best for analysis of medicinal plants. The cream that was developed used buffered cream as the base and was stable at 25 °C/65 percent RH for one month with regard to organoleptic and rheological properties and microbial preservation.
- Full Text:
- Date Issued: 2014
Factors influencing wetland distribution and structure, including ecosystem function of ephemeral wetlands, in Nelson Mandela Bay Municipality (NMBM), South Africa
- Melly, Brigitte Leigh, Gama, Phumelele T
- Authors: Melly, Brigitte Leigh , Gama, Phumelele T
- Date: 2016
- Subjects: Wetland management -- South Africa Wetland ecology -- South Africa -- Nelson Mandela Bay Municipality
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11721 , vital:26960
- Description: The Nelson Mandela Bay Municipality (NMBM) is a semi-arid area along the southern coastline of South Africa (SA). Until recently, there was no systematic approach to research on wetland systems in the NMBM. The systematic identification of wetlands was made more difficult by the relatively large number of small, ephemeral systems that can be difficult to delineate. This has meant that fundamental knowledge on wetland distribution, structure and function has been limited and, consequently, management and conservation strategies have been based on knowledge on systems from other regions of the country. Environmental processes occur at different spatial and temporal scales. These processes have an effect on the abiotic factors and biotic structure of wetlands, resulting in inherently complex systems. The location of the NMBM provides a good study area to research some of these environmental and biological attributes at different spatial scales, due to the variability in the underlying geology, geomorphology, vegetation types and the spatial and temporal variability in rainfall, within a relatively small area of 1951 km2. Thus, the aim of this study was to determine the factors influencing wetland distribution, structure and ecosystem functioning within the NMBM. The first Research Objective of work presented here was to identify wetlands using visual interpretation of aerial photographs. A total of 1712 wetlands were identified within the NMBM using aerial photographs, covering an area of 17.88 km2 (Chapter 5). The majority of these wetlands were depressions, seeps and wetland flats. Valley bottom wetlands (channelled and unchannelled) and floodplain wetlands were also identified. A range of wetland sizes was recorded, with 86% of the wetlands being less than 1 ha in size and the largest natural wetland being a floodplain wetland of 57 ha, located south of the Swartkops River. The identified wetlands were used to create a wetland occurrence model using logistic regression (LR) techniques (Chapter 5), in accordance with Objective 2 of the study. An accuracy of 66% was obtained, which was considered acceptable for a semi-arid climate with a relatively high degree of spatial and temporal rainfall variability. The model also highlighted several key environmental variables that are associated with wetland occurrence and distribution at various spatial scales. Some of the important variables included precipitation, evapotranspiration, temperature, flow accumulation and groundwater occurrence. Wetland distribution patterns were described in Chapter 6. Spatial statistics were used to identify whether wetlands are clustered and, therefore, form mosaics within the surrounding landscape (Objective 3). Systems were found to be highly clustered, with 43% of wetlands located within 200 m of another system. Clustering and wetland presence was especially prominent in the southern portion of the Municipality, which is also associated with a higher mean annual precipitation. Smaller wetlands were also significantly more clustered than larger systems (Average Nearest Neighbour statistic, p-value < 0.0001). Average distances also significantly varied according to HGM type, with depressions being the most geographically isolated wetland type compared to the other HGM types. Overall, distances between wetlands indicated good proximal connectivity. Potentially vulnerable areas associated with wetland systems were identified successfully using landscape variables, in accordance with Objective 4. These variables were: land cover, slope gradient, flow accumulation, APAN evaporation, mean annual precipitation (MAP) and annual heat units. The existing Critical Biodiversity Network was also used in connection with these variables to further identify potentially vulnerable areas. The abiotic and biotic characteristics were decribed for three hydrogeomorphic (HGM) types at a total of 46 wetland sites (Chapter 7), as per Objective 5. Depressions, seeps and wetland flats were sampled across the different geological, vegetation and rainfall zones within the NMBM. The wetland sites were delineated up to Level 6 of the Classification System used in SA, and the various abiotic and biotic characteristics of these systems were defined. A total of 307 plant, 144 aquatic macroinvertebrate and 10 tadpole species were identified. Of these species, over 90 species were Eastern Cape and SA endemic species, as well as three threatened species on the IUCN Red List. Multivariate analyses (including Bray-Curtis similarity resemblance analyses, distance-based redundancy analyses, SIMPER analyses and BIOENV analysis in Primer), together with environmental data, were used to define community structure at an HGM level, in accordance with Objective 5. The importance of the spatial scale of the environmental data used to define plant and macroinvertebrate community structure was described in Chapter 7, to address Objective 6. The results showed that both broad-scale and site-level characteristics were important in distinguishing community structure within the HGM types that superseded general location, the sample timing or the stage of inundation. These results also indicated that a combination of both landscape and site-level data are important in defining the community structure in the various HGM types. Some of the important environmental variables that explained some of species assemblages were similar to those in the wetland occurrence model (Chapter 5), with some additional hydrological and soil physico-chemical parameters (e.g. soil electrical conductivity, soil pH, and surface and subsurface water nutrients). These significant variables indicate the complex, multi-scalar role of environmental attributes on wetland distribution, structure and function.
- Full Text:
- Date Issued: 2016
- Authors: Melly, Brigitte Leigh , Gama, Phumelele T
- Date: 2016
- Subjects: Wetland management -- South Africa Wetland ecology -- South Africa -- Nelson Mandela Bay Municipality
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11721 , vital:26960
- Description: The Nelson Mandela Bay Municipality (NMBM) is a semi-arid area along the southern coastline of South Africa (SA). Until recently, there was no systematic approach to research on wetland systems in the NMBM. The systematic identification of wetlands was made more difficult by the relatively large number of small, ephemeral systems that can be difficult to delineate. This has meant that fundamental knowledge on wetland distribution, structure and function has been limited and, consequently, management and conservation strategies have been based on knowledge on systems from other regions of the country. Environmental processes occur at different spatial and temporal scales. These processes have an effect on the abiotic factors and biotic structure of wetlands, resulting in inherently complex systems. The location of the NMBM provides a good study area to research some of these environmental and biological attributes at different spatial scales, due to the variability in the underlying geology, geomorphology, vegetation types and the spatial and temporal variability in rainfall, within a relatively small area of 1951 km2. Thus, the aim of this study was to determine the factors influencing wetland distribution, structure and ecosystem functioning within the NMBM. The first Research Objective of work presented here was to identify wetlands using visual interpretation of aerial photographs. A total of 1712 wetlands were identified within the NMBM using aerial photographs, covering an area of 17.88 km2 (Chapter 5). The majority of these wetlands were depressions, seeps and wetland flats. Valley bottom wetlands (channelled and unchannelled) and floodplain wetlands were also identified. A range of wetland sizes was recorded, with 86% of the wetlands being less than 1 ha in size and the largest natural wetland being a floodplain wetland of 57 ha, located south of the Swartkops River. The identified wetlands were used to create a wetland occurrence model using logistic regression (LR) techniques (Chapter 5), in accordance with Objective 2 of the study. An accuracy of 66% was obtained, which was considered acceptable for a semi-arid climate with a relatively high degree of spatial and temporal rainfall variability. The model also highlighted several key environmental variables that are associated with wetland occurrence and distribution at various spatial scales. Some of the important variables included precipitation, evapotranspiration, temperature, flow accumulation and groundwater occurrence. Wetland distribution patterns were described in Chapter 6. Spatial statistics were used to identify whether wetlands are clustered and, therefore, form mosaics within the surrounding landscape (Objective 3). Systems were found to be highly clustered, with 43% of wetlands located within 200 m of another system. Clustering and wetland presence was especially prominent in the southern portion of the Municipality, which is also associated with a higher mean annual precipitation. Smaller wetlands were also significantly more clustered than larger systems (Average Nearest Neighbour statistic, p-value < 0.0001). Average distances also significantly varied according to HGM type, with depressions being the most geographically isolated wetland type compared to the other HGM types. Overall, distances between wetlands indicated good proximal connectivity. Potentially vulnerable areas associated with wetland systems were identified successfully using landscape variables, in accordance with Objective 4. These variables were: land cover, slope gradient, flow accumulation, APAN evaporation, mean annual precipitation (MAP) and annual heat units. The existing Critical Biodiversity Network was also used in connection with these variables to further identify potentially vulnerable areas. The abiotic and biotic characteristics were decribed for three hydrogeomorphic (HGM) types at a total of 46 wetland sites (Chapter 7), as per Objective 5. Depressions, seeps and wetland flats were sampled across the different geological, vegetation and rainfall zones within the NMBM. The wetland sites were delineated up to Level 6 of the Classification System used in SA, and the various abiotic and biotic characteristics of these systems were defined. A total of 307 plant, 144 aquatic macroinvertebrate and 10 tadpole species were identified. Of these species, over 90 species were Eastern Cape and SA endemic species, as well as three threatened species on the IUCN Red List. Multivariate analyses (including Bray-Curtis similarity resemblance analyses, distance-based redundancy analyses, SIMPER analyses and BIOENV analysis in Primer), together with environmental data, were used to define community structure at an HGM level, in accordance with Objective 5. The importance of the spatial scale of the environmental data used to define plant and macroinvertebrate community structure was described in Chapter 7, to address Objective 6. The results showed that both broad-scale and site-level characteristics were important in distinguishing community structure within the HGM types that superseded general location, the sample timing or the stage of inundation. These results also indicated that a combination of both landscape and site-level data are important in defining the community structure in the various HGM types. Some of the important environmental variables that explained some of species assemblages were similar to those in the wetland occurrence model (Chapter 5), with some additional hydrological and soil physico-chemical parameters (e.g. soil electrical conductivity, soil pH, and surface and subsurface water nutrients). These significant variables indicate the complex, multi-scalar role of environmental attributes on wetland distribution, structure and function.
- Full Text:
- Date Issued: 2016
Assessing soil carbon and carbon dioxide effluxes under different vegetation cover conditions in the Eastern Cape Province, South Africa
- Authors: Zengeni, Rebecca
- Date: 2013
- Subjects: Soils -- Carbon content -- Measurement , Carbon dioxide mitigation -- South Africa , Greenhouse gas mitigation -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10665 , http://hdl.handle.net/10948/d1018676
- Description: Albany thicket is prevalent in the Eastern Cape Province of South Africa. Its spread has diminished through overgrazing and heavy browsing by animals, land clearance and urban expansion. The result is highly degraded land characterized by invasion of alien species. There is a wealth of documented evidence on the high carbon sequestration ability of thicket biome, but not much has been done to assess its effect on carbon dioxide emissions from the soil. Given that the concentration of atmospheric greenhouse gases has been constantly rising since the industrial era, it is imperative to assess the influence of thicket biome as a source or sink of these gases. There is evidence of shifts in the climate in southern Africa as reflected by changes in rainfall patterns, increased temperatures, recurrent droughts and fires. As such, the historical rainfall variability in an Albany thicket region and its interaction with the temporal land use / cover changes was studied. This served to give some background information about the study area for more detailed study on C and carbon dioxide effluxes in thicket vegetation under different levels of degradation. This study thus aimed to determine the influence of thicket vegetation at various levels of degradation on soil carbon and carbon dioxide fluxes. The impact of plant photosynthetic pathway on soil C residence time and gas effluxes were analysed to elucidate on the land-use and cover patterns occurring in the area. All this was done to shed some light on the role of soil and thicket vegetation on carbon dioxide emissions and C storage in the spectrum of a shifting climate. The main area of research was Amakhala reserve in an Albany thicket in Eastern Cape Province; and it concentrated on three land cover types namely intact thicket, degraded thicket and grassland. The objectives mentioned above were achieved by assessing historical rainfall variability from 1970 to 2010 through trend and time series analysis at nine rainfall stations located at Amakhala reserve, Grahamstown, Bathurst, Port Alfred, Uitenhage and Port Elizabeth. The land use changes that have occurred in the Albany thicket region covering Amakhala reserve, Grahamstown, Bathurst and Port Alfred were also assessed for 1989, 1999 and 2009 through satellite image analysis with Idrisi Andes GIS software; then their interaction with rainfall variability were determined. To elucidate on the vegetation species composition and land use / cover changes that have occurred in the study area, plant biomass as well carbon (C) and nitrogen (N) isotope measurements were done. Plant biomass was assessed for the dominant species through use of pre-existing allometric equations that required data on plant basal diameter, canopy area, stem numbers and height. The plant carbon was then estimated through use of a conversion factor of 0.48 on above-ground biomass, while soil organic C was determined through the modified Walkely - Black method. Carbon and N isotope ratios were determined from the foliar material of three replicate samples of dominant plant species then analyzed through mass spectrometry. Soil carbon dioxide effluxes were then monitored in each of the intact thicket (IT), degraded thicket (DT) and grassland (G) over a 10 month period; by measuring the net carbon dioxide exchange rate (NCER) through the dynamic chamber method. An automated carbon dioxide exchange analyzer, coupled to a soil temperature probe and photosynthetic active radiation (PAR) sensor was used; with NCER measurements taken every 20-30 days. Soil temperature, moisture, penetration resistance and PAR readings were taken during each assay and later used to interpret the NCER. Results showed that long term variability in annual rainfall had a declining trend at Grahamstown (r = -0.59), Uitenhage and Bathurst stations (r = -0.32 at both stations), but was not significant at Amakhala, Port Alfred and Port Elizabeth stations. Most reductions in rainfall occurred in the 1980s and 1990s with the autumn, winter and summer rainfalls, the daily rainfall index and the daily rainfall subclasses of 10 mm and above showing a similar trend. The land use change detection gave a significant increase in proportion of degraded and transformed (moderately degraded) land between 1989 and 2009 with most of the increases occurring from 1989 to 1999, while farmland area decreased by 1.8 percent over the years. Thus the Albany region had over 30 percent of its land occupied by transformed vegetation, with heavy browsing and uncontrolled grazing being attributed to the destruction of pristine vegetation. Land-use change to game ranching and goat pastoralism was attributed to the reduction in farmland. Rainfall variability – land use change linkages were most significant in 1999 that recorded the least rainfall and had the lowest mean, maximum and sum of the NDVI. Grahamstown had the most significant rainfall-NDVI trends as it had the lowest NDVIs in 1999 when rainfall was lowest, the highest NDVI in 1989 when rainfall was highest and moderate NDVIs in 2009 when rainfall was moderate. Vegetation at the IT was characterized by a dense thicket with diverse growth forms of canopy trees, woody shrubs, succulent shrubs and ephemerals which mostly had the C3 type of pathway. This was in contrast with the IT soil isotopy that showed more positive C isotope ratios, indicating a switch between C3 and CAM photosynthesis in original vegetation. Most of the canopy trees had disappeared in the DT to be replaced by herbs, shrubs and grasses. As such, there was a huge difference in isotope ratios between DT plants and soils with the plants having mostly C3 metabolism while the soil showed a predominance of CAM plants in previous vegetation, indicating significant changes in land cover. The G site mostly comprised the grasses Themeda triandra and Panicum maximum and a few herbs. It maintained a dominance of C4 metabolism in both plants and soils showing very little change in species composition over the years. Because of the higher species diversity at IT, its soil organic C was quite high reaching levels of 3.4 percent (i.e. 3.4 t C / ha) in the top 10 cm then decreasing with depth (p < 0.001); but was moderate at DT (1.1-1.3 percent) and very low at G ( 0.5 percent C) (p < 0.001). In the same manner above-ground biomass was highest at IT i.e. 330 000 kg/ha; but was only 22 000 kg/ha in DT and as low as 6 700 kg/ha in G vegetation. High biomass at IT was mostly attributed to the succulent shrub Portulacaria afra and the canopy trees Euclea undulate, Rhus longispina and Schotia afra. This above-ground biomass translated to biomass C amounts of 158 000 kg/ha at IT, 10 600 kg/ha at DT and 3 200 kg/ha at G. Thus the IT had the highest while G the least and DT moderate plant and soil C sequestration ability. In all, the conversion of IT to DT led to a net loss of 147 000 Kg of biomass C / ha and 12 000kg less organic C / ha of land. Soil carbon dioxide effluxes were however variable between seasons as they were affected by differences in soil properties and seasonal weather patterns. High soil moisture levels (up to 16 percent gravimetric moisture) resulted in reduced soil penetration resistance (1 to 4 Kg/cm2) which raised effluxes at G and DT sites (up to 1.2 μmols m-2 sec-1) in winter, while low moisture (2 percent) resulted in hard dry soil (14 Kgm-2 penetration resistance) with suppressed CO2 effluxes in spring (0.2 μmols m-2 sec-1) especially in DT and G soils. Rising temperature generally caused accelerated gas emissions but only when moisture was not limiting (as was the case in IT). Thus the high summer temperatures (up to 40oC) gave lower effluxes especially in DT and G (< 1 μm-2sec-1) due to limited moisture supply (< 10 percent); while the Autumn period that had very high temperature (up to 48 oC) and good moisture (up to 16 percent) saw accelerated soil CO2 emissions (averaging 2 μmols m-2 sec-1) from all cover types. The high biomass and litter fall at IT served as ready substrate for soil respiration as long as moisture was not limiting and temperatures were favourable, while reduced cover at DT resulted in poor moisture conservation and creation of hard dry soils in spring and summer with reduced respiration. It was concluded that the DT had high CO2 effluxes in winter and reduced emissions in summer; while the opposite was true for the IT. All the cover types had minimal CO2 effluxes in spring and accelerated emissions in autumn. The grassland on the other hand was a fairly moderate source or sink of CO2 in most seasons compared with the other two covers. It was observed that an environment of good moisture and low-moderate temperatures (such as that in the winter) minimises effluxes while maintaining good plant productivity. It was concluded that thicket vegetation is a good sink of carbon that should be preserved in its natural condition to optimize its carbon sequestration potential. All three land covers served as sources or sinks of CO2 depending on soil and seasonal conditions. Thus high moisture and low penetration resistance generally increased effluxes of thicket ecosystems. The effect of increasing temperature on effluxes was only significant when moisture was not limiting. Conditions of good moisture and low-moderate temperatures gave reasonable amounts of effluxes while maintaining good plant productivity. Though the dry soil conditions significantly reduced effluxes in all land covers; they were not desirable since they decreased plant productivity and ultimately its C sequestration potential. Moreover, prolonged dry conditions only serve to exacerbate recovery of thicket plants as they increase mortality of canopy species in degraded and transformed areas in comparison with intact thicket.
- Full Text:
- Date Issued: 2013
- Authors: Zengeni, Rebecca
- Date: 2013
- Subjects: Soils -- Carbon content -- Measurement , Carbon dioxide mitigation -- South Africa , Greenhouse gas mitigation -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10665 , http://hdl.handle.net/10948/d1018676
- Description: Albany thicket is prevalent in the Eastern Cape Province of South Africa. Its spread has diminished through overgrazing and heavy browsing by animals, land clearance and urban expansion. The result is highly degraded land characterized by invasion of alien species. There is a wealth of documented evidence on the high carbon sequestration ability of thicket biome, but not much has been done to assess its effect on carbon dioxide emissions from the soil. Given that the concentration of atmospheric greenhouse gases has been constantly rising since the industrial era, it is imperative to assess the influence of thicket biome as a source or sink of these gases. There is evidence of shifts in the climate in southern Africa as reflected by changes in rainfall patterns, increased temperatures, recurrent droughts and fires. As such, the historical rainfall variability in an Albany thicket region and its interaction with the temporal land use / cover changes was studied. This served to give some background information about the study area for more detailed study on C and carbon dioxide effluxes in thicket vegetation under different levels of degradation. This study thus aimed to determine the influence of thicket vegetation at various levels of degradation on soil carbon and carbon dioxide fluxes. The impact of plant photosynthetic pathway on soil C residence time and gas effluxes were analysed to elucidate on the land-use and cover patterns occurring in the area. All this was done to shed some light on the role of soil and thicket vegetation on carbon dioxide emissions and C storage in the spectrum of a shifting climate. The main area of research was Amakhala reserve in an Albany thicket in Eastern Cape Province; and it concentrated on three land cover types namely intact thicket, degraded thicket and grassland. The objectives mentioned above were achieved by assessing historical rainfall variability from 1970 to 2010 through trend and time series analysis at nine rainfall stations located at Amakhala reserve, Grahamstown, Bathurst, Port Alfred, Uitenhage and Port Elizabeth. The land use changes that have occurred in the Albany thicket region covering Amakhala reserve, Grahamstown, Bathurst and Port Alfred were also assessed for 1989, 1999 and 2009 through satellite image analysis with Idrisi Andes GIS software; then their interaction with rainfall variability were determined. To elucidate on the vegetation species composition and land use / cover changes that have occurred in the study area, plant biomass as well carbon (C) and nitrogen (N) isotope measurements were done. Plant biomass was assessed for the dominant species through use of pre-existing allometric equations that required data on plant basal diameter, canopy area, stem numbers and height. The plant carbon was then estimated through use of a conversion factor of 0.48 on above-ground biomass, while soil organic C was determined through the modified Walkely - Black method. Carbon and N isotope ratios were determined from the foliar material of three replicate samples of dominant plant species then analyzed through mass spectrometry. Soil carbon dioxide effluxes were then monitored in each of the intact thicket (IT), degraded thicket (DT) and grassland (G) over a 10 month period; by measuring the net carbon dioxide exchange rate (NCER) through the dynamic chamber method. An automated carbon dioxide exchange analyzer, coupled to a soil temperature probe and photosynthetic active radiation (PAR) sensor was used; with NCER measurements taken every 20-30 days. Soil temperature, moisture, penetration resistance and PAR readings were taken during each assay and later used to interpret the NCER. Results showed that long term variability in annual rainfall had a declining trend at Grahamstown (r = -0.59), Uitenhage and Bathurst stations (r = -0.32 at both stations), but was not significant at Amakhala, Port Alfred and Port Elizabeth stations. Most reductions in rainfall occurred in the 1980s and 1990s with the autumn, winter and summer rainfalls, the daily rainfall index and the daily rainfall subclasses of 10 mm and above showing a similar trend. The land use change detection gave a significant increase in proportion of degraded and transformed (moderately degraded) land between 1989 and 2009 with most of the increases occurring from 1989 to 1999, while farmland area decreased by 1.8 percent over the years. Thus the Albany region had over 30 percent of its land occupied by transformed vegetation, with heavy browsing and uncontrolled grazing being attributed to the destruction of pristine vegetation. Land-use change to game ranching and goat pastoralism was attributed to the reduction in farmland. Rainfall variability – land use change linkages were most significant in 1999 that recorded the least rainfall and had the lowest mean, maximum and sum of the NDVI. Grahamstown had the most significant rainfall-NDVI trends as it had the lowest NDVIs in 1999 when rainfall was lowest, the highest NDVI in 1989 when rainfall was highest and moderate NDVIs in 2009 when rainfall was moderate. Vegetation at the IT was characterized by a dense thicket with diverse growth forms of canopy trees, woody shrubs, succulent shrubs and ephemerals which mostly had the C3 type of pathway. This was in contrast with the IT soil isotopy that showed more positive C isotope ratios, indicating a switch between C3 and CAM photosynthesis in original vegetation. Most of the canopy trees had disappeared in the DT to be replaced by herbs, shrubs and grasses. As such, there was a huge difference in isotope ratios between DT plants and soils with the plants having mostly C3 metabolism while the soil showed a predominance of CAM plants in previous vegetation, indicating significant changes in land cover. The G site mostly comprised the grasses Themeda triandra and Panicum maximum and a few herbs. It maintained a dominance of C4 metabolism in both plants and soils showing very little change in species composition over the years. Because of the higher species diversity at IT, its soil organic C was quite high reaching levels of 3.4 percent (i.e. 3.4 t C / ha) in the top 10 cm then decreasing with depth (p < 0.001); but was moderate at DT (1.1-1.3 percent) and very low at G ( 0.5 percent C) (p < 0.001). In the same manner above-ground biomass was highest at IT i.e. 330 000 kg/ha; but was only 22 000 kg/ha in DT and as low as 6 700 kg/ha in G vegetation. High biomass at IT was mostly attributed to the succulent shrub Portulacaria afra and the canopy trees Euclea undulate, Rhus longispina and Schotia afra. This above-ground biomass translated to biomass C amounts of 158 000 kg/ha at IT, 10 600 kg/ha at DT and 3 200 kg/ha at G. Thus the IT had the highest while G the least and DT moderate plant and soil C sequestration ability. In all, the conversion of IT to DT led to a net loss of 147 000 Kg of biomass C / ha and 12 000kg less organic C / ha of land. Soil carbon dioxide effluxes were however variable between seasons as they were affected by differences in soil properties and seasonal weather patterns. High soil moisture levels (up to 16 percent gravimetric moisture) resulted in reduced soil penetration resistance (1 to 4 Kg/cm2) which raised effluxes at G and DT sites (up to 1.2 μmols m-2 sec-1) in winter, while low moisture (2 percent) resulted in hard dry soil (14 Kgm-2 penetration resistance) with suppressed CO2 effluxes in spring (0.2 μmols m-2 sec-1) especially in DT and G soils. Rising temperature generally caused accelerated gas emissions but only when moisture was not limiting (as was the case in IT). Thus the high summer temperatures (up to 40oC) gave lower effluxes especially in DT and G (< 1 μm-2sec-1) due to limited moisture supply (< 10 percent); while the Autumn period that had very high temperature (up to 48 oC) and good moisture (up to 16 percent) saw accelerated soil CO2 emissions (averaging 2 μmols m-2 sec-1) from all cover types. The high biomass and litter fall at IT served as ready substrate for soil respiration as long as moisture was not limiting and temperatures were favourable, while reduced cover at DT resulted in poor moisture conservation and creation of hard dry soils in spring and summer with reduced respiration. It was concluded that the DT had high CO2 effluxes in winter and reduced emissions in summer; while the opposite was true for the IT. All the cover types had minimal CO2 effluxes in spring and accelerated emissions in autumn. The grassland on the other hand was a fairly moderate source or sink of CO2 in most seasons compared with the other two covers. It was observed that an environment of good moisture and low-moderate temperatures (such as that in the winter) minimises effluxes while maintaining good plant productivity. It was concluded that thicket vegetation is a good sink of carbon that should be preserved in its natural condition to optimize its carbon sequestration potential. All three land covers served as sources or sinks of CO2 depending on soil and seasonal conditions. Thus high moisture and low penetration resistance generally increased effluxes of thicket ecosystems. The effect of increasing temperature on effluxes was only significant when moisture was not limiting. Conditions of good moisture and low-moderate temperatures gave reasonable amounts of effluxes while maintaining good plant productivity. Though the dry soil conditions significantly reduced effluxes in all land covers; they were not desirable since they decreased plant productivity and ultimately its C sequestration potential. Moreover, prolonged dry conditions only serve to exacerbate recovery of thicket plants as they increase mortality of canopy species in degraded and transformed areas in comparison with intact thicket.
- Full Text:
- Date Issued: 2013
Diversity and ecological role of true crabs (crustacea, brachyura) in the St Lucia Estuary, iSimangaliso Wetland Park, in response to global change
- Authors: Peer, Nasreen
- Date: 2016
- Subjects: Crustacea -- South Africa -- KwaZulu-Natal Crustacea -- South Africa -- Saint Lucia, Lake , Global environmental change
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/45558 , vital:38669
- Description: This work has explored novel concepts of crab vulnerability, recovery and resilience under unprecedented climatic changes in South Africa’s first UNESCO World Heritage Site. By showing how large salinity shifts and prolonged interruption of the marine connection can drastically affect brachyuran diversity and community structure in St. Lucia Lake, the potential cascading effects on ecosystem functioning were estimated. Only 15 crab species were recorded within the system during this study, compared to the 26 species that were known to occur prior to the recent environmental shift (i.e. 58% decline). The impact of this biodiversity collapse has negatively affected the associated mangrove ecosystem in particular, with the entire community of fiddler crabs persisting only in a small area near the estuary mouth. Gut fluorescence measurements have shown that, due to a lack of tidal Influence, their grazing impact on microphytobenthic biomass may become unsustainable. However, although adults are able to survive in this environment, the larvae require a marine connection; and they are thus unable to tolerate the wide fluctuations in salinity currently prevailing in the system. The study concludes that brachyurans are key factors to consider during conservation planning, as they are crucial to maintaining ecosystem function in the face of environmental change. This research is of global relevance, as many similar estuarine and coastal lakes around the world are currently experiencing similar state shifts. All six chapters included in the thesis have already been published in the peer-reviewed literature; and the project results have also earned Nasreen the NRF award of Next-Generation Researcher of the Year for 2015.
- Full Text:
- Date Issued: 2016
- Authors: Peer, Nasreen
- Date: 2016
- Subjects: Crustacea -- South Africa -- KwaZulu-Natal Crustacea -- South Africa -- Saint Lucia, Lake , Global environmental change
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/45558 , vital:38669
- Description: This work has explored novel concepts of crab vulnerability, recovery and resilience under unprecedented climatic changes in South Africa’s first UNESCO World Heritage Site. By showing how large salinity shifts and prolonged interruption of the marine connection can drastically affect brachyuran diversity and community structure in St. Lucia Lake, the potential cascading effects on ecosystem functioning were estimated. Only 15 crab species were recorded within the system during this study, compared to the 26 species that were known to occur prior to the recent environmental shift (i.e. 58% decline). The impact of this biodiversity collapse has negatively affected the associated mangrove ecosystem in particular, with the entire community of fiddler crabs persisting only in a small area near the estuary mouth. Gut fluorescence measurements have shown that, due to a lack of tidal Influence, their grazing impact on microphytobenthic biomass may become unsustainable. However, although adults are able to survive in this environment, the larvae require a marine connection; and they are thus unable to tolerate the wide fluctuations in salinity currently prevailing in the system. The study concludes that brachyurans are key factors to consider during conservation planning, as they are crucial to maintaining ecosystem function in the face of environmental change. This research is of global relevance, as many similar estuarine and coastal lakes around the world are currently experiencing similar state shifts. All six chapters included in the thesis have already been published in the peer-reviewed literature; and the project results have also earned Nasreen the NRF award of Next-Generation Researcher of the Year for 2015.
- Full Text:
- Date Issued: 2016
An evaluation of programming assistance tools to support the learning of IT programming: a case study in South African secondary schools
- Authors: Koorsse, Melisa
- Date: 2012
- Subjects: Computer science , Computer literacy , Computer programming
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10472 , http://hdl.handle.net/10948/d1010581 , Computer science , Computer literacy , Computer programming
- Description: Worldwide, there is a decline in interest in the computer science profession and in the subject at secondary school level. Novice programmers struggle to understand introductory programming concepts and this difficulty of learning to program is contributing to the lack of interest in the field of computer science. Information Technology (IT) learners in South African secondary schools are novice programmers, introduced to introductory programming concepts in the subject which also includes topics on hardware and system software, e-communication, social and ethical issues, spreadsheets and databases. The difficulties faced by IT learners are worsened by the lack of suitably qualified teachers, a saturated learning programme that allocates very little time to the understanding of complex programming concepts and limited class time where practical examples can be implemented with the support of the IT teacher. This research proposes that IT learners could be supported by a programming assistance tool (PAT). A PAT is a software program that can be used by novice programmers to learn how to program and/or improve their understanding of programming concepts. PATs use different techniques to assist novice programmers. The main objective of this research was to determine whether the use of a PAT impacted IT learners’ understanding of programming concepts and motivation towards programming. The literature study and feedback from IT learners and teachers were used to identify novice programming difficulties and IT learner programming difficulties, respectively. Selection criteria were derived from the programming difficulties identified. The selection criteria were grouped into three categories, namely, programming concepts, programming knowledge and programming skills. Existing PATs were evaluated using the selection criteria and three PATs, namely, RoboMind, Scratch and B#, were selected as suitable for use by IT learners. RoboMind was adapted in this research study, allowing it to support the Delphi programming language. The three PATs were evaluated by participating IT learners at four schools. The findings of this research provided no conclusive evidence that IT learners who used a PAT had a significantly better understanding of programming concepts and motivation towards programming than learners who did not use a PAT. IT learner feedback was used to identify the strengths and shortcomings of the three PATs and to provide recommendations for the development of PATs specifically to support IT learners. This research study has provided several theoretical and practical contributions, including the research design, selection criteria, adaptations to RoboMind and the evaluation of the three PATs. In addition, IT teachers and learners have been made aware of PATs and the support that can be provided by these PATs. IT teachers have also been provided with a means of selecting PATs applicable to the IT curriculum. All the research contributions have formed the basis for future work, such as improving and extending RoboMind’s functionality and support of programming concepts, the refinement of the selection criteria and, ultimately, the development of a new PAT, specifically designed to support IT learner understanding of programming concepts and motivation towards programming.
- Full Text:
- Date Issued: 2012
- Authors: Koorsse, Melisa
- Date: 2012
- Subjects: Computer science , Computer literacy , Computer programming
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10472 , http://hdl.handle.net/10948/d1010581 , Computer science , Computer literacy , Computer programming
- Description: Worldwide, there is a decline in interest in the computer science profession and in the subject at secondary school level. Novice programmers struggle to understand introductory programming concepts and this difficulty of learning to program is contributing to the lack of interest in the field of computer science. Information Technology (IT) learners in South African secondary schools are novice programmers, introduced to introductory programming concepts in the subject which also includes topics on hardware and system software, e-communication, social and ethical issues, spreadsheets and databases. The difficulties faced by IT learners are worsened by the lack of suitably qualified teachers, a saturated learning programme that allocates very little time to the understanding of complex programming concepts and limited class time where practical examples can be implemented with the support of the IT teacher. This research proposes that IT learners could be supported by a programming assistance tool (PAT). A PAT is a software program that can be used by novice programmers to learn how to program and/or improve their understanding of programming concepts. PATs use different techniques to assist novice programmers. The main objective of this research was to determine whether the use of a PAT impacted IT learners’ understanding of programming concepts and motivation towards programming. The literature study and feedback from IT learners and teachers were used to identify novice programming difficulties and IT learner programming difficulties, respectively. Selection criteria were derived from the programming difficulties identified. The selection criteria were grouped into three categories, namely, programming concepts, programming knowledge and programming skills. Existing PATs were evaluated using the selection criteria and three PATs, namely, RoboMind, Scratch and B#, were selected as suitable for use by IT learners. RoboMind was adapted in this research study, allowing it to support the Delphi programming language. The three PATs were evaluated by participating IT learners at four schools. The findings of this research provided no conclusive evidence that IT learners who used a PAT had a significantly better understanding of programming concepts and motivation towards programming than learners who did not use a PAT. IT learner feedback was used to identify the strengths and shortcomings of the three PATs and to provide recommendations for the development of PATs specifically to support IT learners. This research study has provided several theoretical and practical contributions, including the research design, selection criteria, adaptations to RoboMind and the evaluation of the three PATs. In addition, IT teachers and learners have been made aware of PATs and the support that can be provided by these PATs. IT teachers have also been provided with a means of selecting PATs applicable to the IT curriculum. All the research contributions have formed the basis for future work, such as improving and extending RoboMind’s functionality and support of programming concepts, the refinement of the selection criteria and, ultimately, the development of a new PAT, specifically designed to support IT learner understanding of programming concepts and motivation towards programming.
- Full Text:
- Date Issued: 2012
The concentration of ten metals in the tissues of shark species Squalus megalops and Mustelus mustelus (chondrichthyes) occuring along the Southeastern coast of South Africa
- Erasmus, Christina Petronella
- Authors: Erasmus, Christina Petronella
- Date: 2004
- Subjects: Sharks -- South Africa -- Effect of metals on , Marine pollution -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:11085 , http://hdl.handle.net/10948/328 , Sharks -- South Africa -- Effect of metals on , Marine pollution -- South Africa
- Description: The southeastern coast of South Africa is deemed unpolluted and with the exception of a few localized areas, is believed to be pristine. This study aimed to (1) assess the concentration of metals in the water and sharks (Squalus megalops, Mustelus mustelus) from different sites along the southeastern coast, (2) determine the effects that metals have on each other and investigate the accumulation and storage of metals in different shark tissues, (3) determine the effects of length and sex on metal concentration and the presence of metallothioneins in the liver. Metal concentrations in water from seven sites along the southeastern coast revealed concentrations below the detection limit of the extraction method, except for iron at St. Francis Bay which was below the recommended levels as supplied by DWAF. Met al concentrations in S. megalops from the seven sites revealed significantly elevated levels in individuals from Algoa and St. Francis Bay when compared to the other 5 sites. This was observed for all metals except manganese, which had a higher concentration at Cape Agulhas. After comparing the metal levels in muscle tissue (S. megalops) with data from the Department of Health it was concluded that the sharks caught at Algoa and St. Francis Bay were unsuited for human consumption. Liver and vertebral tissues from both S. megalops and M. mustelus were deemed unsuited for human consumption but further research should be conducted especially on vertebral metal concentrations. Comparing the metal concentration in different tissue types of S. megalops and M. mustelus significant difference were observed and attributed to differences in the maturity (thus age) of the two species. Significant differences in the metal concentration of males and females for both the species were observed. A higher number of differences were however observed in M. mustelus than in S. megalops, most probably due to the differences in maturity. Length and weight vs. metal concentration regressions in the males and females of both species revealed more negative than positive trends. This was found to be in accordance with other studies from around the world. Using the life stages of S. megalops, significant differences in the average concentration of metals were observed between the life stages, with embryos usually having the highest concentration. The metal concentration series determined for S. megalops were similar to that which have been reported in the literature in that iron and zinc occupied the highest concentration positions while cadmium, copper and manganese occupied the last three. The spleen usually had the highest metal concentration except for aluminium in skin and arsenic in muscle tissue. Pearson correlation revealed significant negative correlations between cadmium and the mentioned metals suggesting that cadmium replaces essential metals such as manganese, iron and copper as. Negative correlations between essential metals were observed most probably due to the competition for binding positions on ligands. Positive correlations were observed between metals in sp ecific tissue types and may be indicative of synergistic effects, e.g. aluminium may result in the accumulation of other metals such as cadmium. Positive and negative correlations between a specific metal and different tissue types have also been observed and it appears that there are movement of metals between tissue types. Positive correlation for essential metals between yolk and other tissue have been observed, although no correlations for non-essential metals were observed. This could potentially indicate a mechanism that prevents the accumulation of nonessential metals in embryos. Though no metallothioneins were isolated form the liver, the presence of cadmium in other proteins indicate that that cadmium is substituted for essential metals, and as this may result in deleterious physiological effects, further studies should be conducted. In conclusion it can be said that although some of the results were expected there are still quite a few unanswered question and further studies should be conducted.
- Full Text:
- Date Issued: 2004
- Authors: Erasmus, Christina Petronella
- Date: 2004
- Subjects: Sharks -- South Africa -- Effect of metals on , Marine pollution -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:11085 , http://hdl.handle.net/10948/328 , Sharks -- South Africa -- Effect of metals on , Marine pollution -- South Africa
- Description: The southeastern coast of South Africa is deemed unpolluted and with the exception of a few localized areas, is believed to be pristine. This study aimed to (1) assess the concentration of metals in the water and sharks (Squalus megalops, Mustelus mustelus) from different sites along the southeastern coast, (2) determine the effects that metals have on each other and investigate the accumulation and storage of metals in different shark tissues, (3) determine the effects of length and sex on metal concentration and the presence of metallothioneins in the liver. Metal concentrations in water from seven sites along the southeastern coast revealed concentrations below the detection limit of the extraction method, except for iron at St. Francis Bay which was below the recommended levels as supplied by DWAF. Met al concentrations in S. megalops from the seven sites revealed significantly elevated levels in individuals from Algoa and St. Francis Bay when compared to the other 5 sites. This was observed for all metals except manganese, which had a higher concentration at Cape Agulhas. After comparing the metal levels in muscle tissue (S. megalops) with data from the Department of Health it was concluded that the sharks caught at Algoa and St. Francis Bay were unsuited for human consumption. Liver and vertebral tissues from both S. megalops and M. mustelus were deemed unsuited for human consumption but further research should be conducted especially on vertebral metal concentrations. Comparing the metal concentration in different tissue types of S. megalops and M. mustelus significant difference were observed and attributed to differences in the maturity (thus age) of the two species. Significant differences in the metal concentration of males and females for both the species were observed. A higher number of differences were however observed in M. mustelus than in S. megalops, most probably due to the differences in maturity. Length and weight vs. metal concentration regressions in the males and females of both species revealed more negative than positive trends. This was found to be in accordance with other studies from around the world. Using the life stages of S. megalops, significant differences in the average concentration of metals were observed between the life stages, with embryos usually having the highest concentration. The metal concentration series determined for S. megalops were similar to that which have been reported in the literature in that iron and zinc occupied the highest concentration positions while cadmium, copper and manganese occupied the last three. The spleen usually had the highest metal concentration except for aluminium in skin and arsenic in muscle tissue. Pearson correlation revealed significant negative correlations between cadmium and the mentioned metals suggesting that cadmium replaces essential metals such as manganese, iron and copper as. Negative correlations between essential metals were observed most probably due to the competition for binding positions on ligands. Positive correlations were observed between metals in sp ecific tissue types and may be indicative of synergistic effects, e.g. aluminium may result in the accumulation of other metals such as cadmium. Positive and negative correlations between a specific metal and different tissue types have also been observed and it appears that there are movement of metals between tissue types. Positive correlation for essential metals between yolk and other tissue have been observed, although no correlations for non-essential metals were observed. This could potentially indicate a mechanism that prevents the accumulation of nonessential metals in embryos. Though no metallothioneins were isolated form the liver, the presence of cadmium in other proteins indicate that that cadmium is substituted for essential metals, and as this may result in deleterious physiological effects, further studies should be conducted. In conclusion it can be said that although some of the results were expected there are still quite a few unanswered question and further studies should be conducted.
- Full Text:
- Date Issued: 2004
Novel aspects of platinum-amine coordination compounds: their chemistry and anticancer application
- Authors: Bouwer, Yolanda
- Date: 2008
- Subjects: Coordination compounds , Platinum compounds , Antineoplastic agents
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10444 , http://hdl.handle.net/10948/d1021052
- Description: The aim in this thesis, was to synthesize novel platinum coordination compounds, in order to develop compounds with improved anticancer action which could lead to an improved understanding of the mechanism by which they operate and at the same time, improve synthetic methods for their products. The initial work included the development of a novel synthetic method for 1R,2R-diaminocyclohexaneoxalato-platinum(II) (oxaliplatin), by using an essentially non-aqueous solvent medium and direct ligand exchange at elevated temperatures. This was done by a study of the kinetics of the reaction in a variety of conditions; such as relative reagent concentrations and ratios as well as solvent mixtures. An effective method was developed which could be applied industrially. An international patent was taken out on this method. Various amine complexes of platinum(II) were synthesized using chloro, bromo and oxalato groups as leaving groups. The non-leaving groups were selected having certain specific characteristics in mind. Novel mononitroplatinum(IV) complexes were synthesized, mostly with oxalato leaving groups. One of these in particular, had excellent anticancer behaviour. Another trichloromononitro complex was also synthesized with very good anticancer properties. Two international patents were filed for the latter two compounds. As far as possible, all compounds were studied by spectrometric, chromatographic and thermal methods. They were also tested against 3 cancer cell lines namely cervical (Hela), Colon (HT29) and Breast (MCF7) cancer cells.
- Full Text:
- Date Issued: 2008
- Authors: Bouwer, Yolanda
- Date: 2008
- Subjects: Coordination compounds , Platinum compounds , Antineoplastic agents
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10444 , http://hdl.handle.net/10948/d1021052
- Description: The aim in this thesis, was to synthesize novel platinum coordination compounds, in order to develop compounds with improved anticancer action which could lead to an improved understanding of the mechanism by which they operate and at the same time, improve synthetic methods for their products. The initial work included the development of a novel synthetic method for 1R,2R-diaminocyclohexaneoxalato-platinum(II) (oxaliplatin), by using an essentially non-aqueous solvent medium and direct ligand exchange at elevated temperatures. This was done by a study of the kinetics of the reaction in a variety of conditions; such as relative reagent concentrations and ratios as well as solvent mixtures. An effective method was developed which could be applied industrially. An international patent was taken out on this method. Various amine complexes of platinum(II) were synthesized using chloro, bromo and oxalato groups as leaving groups. The non-leaving groups were selected having certain specific characteristics in mind. Novel mononitroplatinum(IV) complexes were synthesized, mostly with oxalato leaving groups. One of these in particular, had excellent anticancer behaviour. Another trichloromononitro complex was also synthesized with very good anticancer properties. Two international patents were filed for the latter two compounds. As far as possible, all compounds were studied by spectrometric, chromatographic and thermal methods. They were also tested against 3 cancer cell lines namely cervical (Hela), Colon (HT29) and Breast (MCF7) cancer cells.
- Full Text:
- Date Issued: 2008