Static analysis of functional languages
- Authors: Mountjoy, Jon-Dean
- Date: 1994 , 2012-10-10
- Subjects: Functional programming languages
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4669 , http://hdl.handle.net/10962/d1006690 , Functional programming languages
- Description: Static analysis is the name given to a number of compile time analysis techniques used to automatically generate information which can lead to improvements in the execution performance of function languages. This thesis provides an introduction to these techniques and their implementation. The abstract interpretation framework is an example of a technique used to extract information from a program by providing the program with an alternate semantics and evaluating this program over a non-standard domain. The elements of this domain represent certain properties of interest. This framework is examined in detail, as well as various extensions and variants of it. The use of binary logical relations and program logics as alternative formulations of the framework , and partial equivalence relations as an extension to it, are also looked at. The projection analysis framework determines how much of a sub-expression can be evaluated by examining the context in which the expression is to be evaluated, and provides an elegant method for finding particular types of information from data structures. This is also examined. The most costly operation in implementing an analysis is the computation of fixed points. Methods developed to make this process more efficient are looked at. This leads to the final chapter which highlights the dependencies and relationships between the different frameworks and their mathematical disciplines. , KMBT_223
- Full Text:
- Date Issued: 1994
- Authors: Mountjoy, Jon-Dean
- Date: 1994 , 2012-10-10
- Subjects: Functional programming languages
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4669 , http://hdl.handle.net/10962/d1006690 , Functional programming languages
- Description: Static analysis is the name given to a number of compile time analysis techniques used to automatically generate information which can lead to improvements in the execution performance of function languages. This thesis provides an introduction to these techniques and their implementation. The abstract interpretation framework is an example of a technique used to extract information from a program by providing the program with an alternate semantics and evaluating this program over a non-standard domain. The elements of this domain represent certain properties of interest. This framework is examined in detail, as well as various extensions and variants of it. The use of binary logical relations and program logics as alternative formulations of the framework , and partial equivalence relations as an extension to it, are also looked at. The projection analysis framework determines how much of a sub-expression can be evaluated by examining the context in which the expression is to be evaluated, and provides an elegant method for finding particular types of information from data structures. This is also examined. The most costly operation in implementing an analysis is the computation of fixed points. Methods developed to make this process more efficient are looked at. This leads to the final chapter which highlights the dependencies and relationships between the different frameworks and their mathematical disciplines. , KMBT_223
- Full Text:
- Date Issued: 1994
An investigation of chlorbutol in ophthalmic and parenteral solutions
- Authors: Summers, Robert Stanley
- Date: 1967
- Subjects: Parenteral solutions , Solutions (Pharmacy) , Ocular pharmacology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3842 , http://hdl.handle.net/10962/d1007694 , Parenteral solutions , Solutions (Pharmacy) , Ocular pharmacology
- Description: From Introduction Chlorbutol , which is tri-chlor-tertiary-butanol, was first prepared by Willgerodt in 1886 (1). The reaction he used for its preparation is still used today, though slightly modified (2)(3)(4), and is suggested by its original name "acetone-chloroform". The substance was prepared by adding solid potassium hydroxide to a cold mixture of acetone and chloroform (5 ). Chlorbutol is a derivative of the trichlorinated derivative of methane, and its formation may best be described by the use of structural formulae.
- Full Text:
- Date Issued: 1967
- Authors: Summers, Robert Stanley
- Date: 1967
- Subjects: Parenteral solutions , Solutions (Pharmacy) , Ocular pharmacology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3842 , http://hdl.handle.net/10962/d1007694 , Parenteral solutions , Solutions (Pharmacy) , Ocular pharmacology
- Description: From Introduction Chlorbutol , which is tri-chlor-tertiary-butanol, was first prepared by Willgerodt in 1886 (1). The reaction he used for its preparation is still used today, though slightly modified (2)(3)(4), and is suggested by its original name "acetone-chloroform". The substance was prepared by adding solid potassium hydroxide to a cold mixture of acetone and chloroform (5 ). Chlorbutol is a derivative of the trichlorinated derivative of methane, and its formation may best be described by the use of structural formulae.
- Full Text:
- Date Issued: 1967
The culture of Dunaliella salina and the production of β-carotene in tannery effluents
- Authors: Laubscher, Richard Keith
- Date: 1992
- Subjects: Dunaliella , Carotenes , Tanneries -- Waste disposal , Recycling (Waste, etc.)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4055 , http://hdl.handle.net/10962/d1004116 , Dunaliella , Carotenes , Tanneries -- Waste disposal , Recycling (Waste, etc.)
- Description: The problems of waste disposal in the tanning industry are unique in that the effluents are highly saline, have a high organic loading and contain heavy metals. Methods are available for the safe treatment and disposal of the latter two components, but the saline component requires the expensive outlay of evaporation ponds. This study has identified a possible use for the saline effluents, turning a problematic waste product into a potentially valuable by-product. A range of tannery effluents were identified and tested for their suitability for the mass cultivation of Dunaliella salina (bardawil strain). The bardawil strain was preferred over a local isolate because of its higher production of β-carotene. Ponded tannery effluents and combined processes effluent proved unsuitable for realistic propagation of the alga. Anaerobic digestion of combined processes effluent did not improve its suitability significantly. Anaerobic digestion of hide-soak effluent may remove persistent antimicrobial agents which influence algal growth, but its contribution to enhancing algal growth is equivocal. Undigested hide-soak effluent lacking in persistent antimicrobial agents was found to be an ideal culture medium, as no additional nutrients needed to be added. Significantly higher biomass was obtained in this effluent compared to chemically defined media. Induction of β-carotene was achieved in nitrogen-deficient defined media after culture in tannery effluent. This suggests that a two-stage system using hide-soak effluent for cell propagation and nitrogen deficient media for β-carotene induction, could be possible for the mass cultivation of D. salina for β-carotene production.
- Full Text:
- Date Issued: 1992
- Authors: Laubscher, Richard Keith
- Date: 1992
- Subjects: Dunaliella , Carotenes , Tanneries -- Waste disposal , Recycling (Waste, etc.)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4055 , http://hdl.handle.net/10962/d1004116 , Dunaliella , Carotenes , Tanneries -- Waste disposal , Recycling (Waste, etc.)
- Description: The problems of waste disposal in the tanning industry are unique in that the effluents are highly saline, have a high organic loading and contain heavy metals. Methods are available for the safe treatment and disposal of the latter two components, but the saline component requires the expensive outlay of evaporation ponds. This study has identified a possible use for the saline effluents, turning a problematic waste product into a potentially valuable by-product. A range of tannery effluents were identified and tested for their suitability for the mass cultivation of Dunaliella salina (bardawil strain). The bardawil strain was preferred over a local isolate because of its higher production of β-carotene. Ponded tannery effluents and combined processes effluent proved unsuitable for realistic propagation of the alga. Anaerobic digestion of combined processes effluent did not improve its suitability significantly. Anaerobic digestion of hide-soak effluent may remove persistent antimicrobial agents which influence algal growth, but its contribution to enhancing algal growth is equivocal. Undigested hide-soak effluent lacking in persistent antimicrobial agents was found to be an ideal culture medium, as no additional nutrients needed to be added. Significantly higher biomass was obtained in this effluent compared to chemically defined media. Induction of β-carotene was achieved in nitrogen-deficient defined media after culture in tannery effluent. This suggests that a two-stage system using hide-soak effluent for cell propagation and nitrogen deficient media for β-carotene induction, could be possible for the mass cultivation of D. salina for β-carotene production.
- Full Text:
- Date Issued: 1992
The effect of in vitro digestion on selected biological activities of Hypoxis sobolifera corms
- Authors: Van Rooyen, Anzel
- Date: 2013
- Subjects: Potatoes -- Therapeutic use , Medicinal plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10344 , http://hdl.handle.net/10948/d1020058
- Description: In South Africa part of the cultural and religious beliefs of the African people is the use of traditional remedies to treat diseases. These remedies are obtained from medicinal plants (Steenkamp, 2003). One of the most frequently traded plants in the Eastern Cape is Hypoxis, commonly known as Afrika patat, or African potato. South African traditional healers instruct patients to brew the fresh Hypoxis corm as a tea and then ingest it (Steenkamp, 2006a). This prompted an investigation into the digestive stability of a traditionally prepared Hypoxis extract. The H. sobolifera extracts were digested using a simulated gastric/small intestinal digestion and their biological activity determined. The hot water H. sobolifera extract before digestion only showed cytotoxic activity against cancer cell lines at very high concentrations which are not likely to be achieved under normal ingestion circumstances. In Chang liver cells on the other hand, chronic exposure to the hot water H. sobolifera extract increased glucose uptake in amounts similar to that of metformin. On the negative side, the glucose utilization stimulation was lost due to the simulated digestion process. The significant inhibition of AGEs by hot water H. sobolifera extract (IC50 of 6.3 Ig/ml) is a very encouraging result as treatment in the management of diabetes. This activity was only slightly reduced by the in vitro digestion process. Also observed was enzyme inhibition activity by traditionally prepared H. sobolifera, with ∝-amylase being inhibited (IC50 of approximately 250 Ig/ml) and therefore preventing or limiting starch breakdown. From the DPPH results it was clear that H. sobolifera, even when digested, is a potent anti-oxidant (IC50 of 134.4 Ig/ml when undigested compared to 162.9 when digested with β-glucosidase added to stomach digestive step). HPLC and TLC experiments revealed that rooperol which has previously been thought to be the compound responsible for the anti-oxidant activity in Hypoxis extracts, was absent from the traditional extract of H. sobolifera and therefore cannot be the sole compound exhibiting anti-oxidant activity; other compounds such as phenolics may be contributing. The phenolic and flavonoid content results revealed very highconcentrations of these compounds in the traditionally prepared H. sobolifera extract. These compounds may therefore play major roles in all of the biological activities observed from treatment with Hypoxis spp. The ROS results yielded interesting and promising results. Using standard or traditionally prepared H. sobolifera extracts, activation of differentiated U937 cells with PMA was greatly enhanced by cotreatment with the extracts, while extracts on their own did not cause significant activation. Future studies should investigate this property of the extracts as a promising immune boosterThe HPLC results showed that hypoxoside was undetectable in the hot water traditional extract and the TLC anti-oxidant experiment proved that rooperol is not present in the hot water traditional extract after treatment with β-glucosidase. This indicates that neither one of the Hypoxis compounds previously believed to be responsible for the biological activities observed are present in the extract when prepared the traditional way. Therefore, the biological activities observed in this study can be attributed to other phytochemical compounds.
- Full Text:
- Date Issued: 2013
- Authors: Van Rooyen, Anzel
- Date: 2013
- Subjects: Potatoes -- Therapeutic use , Medicinal plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10344 , http://hdl.handle.net/10948/d1020058
- Description: In South Africa part of the cultural and religious beliefs of the African people is the use of traditional remedies to treat diseases. These remedies are obtained from medicinal plants (Steenkamp, 2003). One of the most frequently traded plants in the Eastern Cape is Hypoxis, commonly known as Afrika patat, or African potato. South African traditional healers instruct patients to brew the fresh Hypoxis corm as a tea and then ingest it (Steenkamp, 2006a). This prompted an investigation into the digestive stability of a traditionally prepared Hypoxis extract. The H. sobolifera extracts were digested using a simulated gastric/small intestinal digestion and their biological activity determined. The hot water H. sobolifera extract before digestion only showed cytotoxic activity against cancer cell lines at very high concentrations which are not likely to be achieved under normal ingestion circumstances. In Chang liver cells on the other hand, chronic exposure to the hot water H. sobolifera extract increased glucose uptake in amounts similar to that of metformin. On the negative side, the glucose utilization stimulation was lost due to the simulated digestion process. The significant inhibition of AGEs by hot water H. sobolifera extract (IC50 of 6.3 Ig/ml) is a very encouraging result as treatment in the management of diabetes. This activity was only slightly reduced by the in vitro digestion process. Also observed was enzyme inhibition activity by traditionally prepared H. sobolifera, with ∝-amylase being inhibited (IC50 of approximately 250 Ig/ml) and therefore preventing or limiting starch breakdown. From the DPPH results it was clear that H. sobolifera, even when digested, is a potent anti-oxidant (IC50 of 134.4 Ig/ml when undigested compared to 162.9 when digested with β-glucosidase added to stomach digestive step). HPLC and TLC experiments revealed that rooperol which has previously been thought to be the compound responsible for the anti-oxidant activity in Hypoxis extracts, was absent from the traditional extract of H. sobolifera and therefore cannot be the sole compound exhibiting anti-oxidant activity; other compounds such as phenolics may be contributing. The phenolic and flavonoid content results revealed very highconcentrations of these compounds in the traditionally prepared H. sobolifera extract. These compounds may therefore play major roles in all of the biological activities observed from treatment with Hypoxis spp. The ROS results yielded interesting and promising results. Using standard or traditionally prepared H. sobolifera extracts, activation of differentiated U937 cells with PMA was greatly enhanced by cotreatment with the extracts, while extracts on their own did not cause significant activation. Future studies should investigate this property of the extracts as a promising immune boosterThe HPLC results showed that hypoxoside was undetectable in the hot water traditional extract and the TLC anti-oxidant experiment proved that rooperol is not present in the hot water traditional extract after treatment with β-glucosidase. This indicates that neither one of the Hypoxis compounds previously believed to be responsible for the biological activities observed are present in the extract when prepared the traditional way. Therefore, the biological activities observed in this study can be attributed to other phytochemical compounds.
- Full Text:
- Date Issued: 2013
The effects of sustained attention, workload and task-related fatigue on physiological measures and performance during a tracking task
- Authors: De Gray Birch, Casey
- Date: 2012
- Subjects: Fatigue -- Physiological aspects -- Research , Attention -- Physiological aspects -- Research , Human engineering -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5120 , http://hdl.handle.net/10962/d1005198 , Fatigue -- Physiological aspects -- Research , Attention -- Physiological aspects -- Research , Human engineering -- Research
- Description: Despite extensive research into the concept of mental fatigue there is as yet no “gold standard” definition or measurement technique available. Because of this a large amount of fatigue-related errors are still seen in the workplace. The complexity of the problem lies with the inability to directly measure mental processes as well as the various endogenous and exogenous factors that interact to produce the experienced fatigue. Fatigue has been divided into sleep-related and task-related fatigue; however the task-related aspect is evident both during normal waking hours as well as during periods of sleep deprivation, therefore this aspect is considered important in the understanding of fatigue in general. The concept of task-related fatigue has further been divided into active and passive fatigue states; however differentiation between the two requires careful consideration. Various physiological measures have been employed in an attempt to gain a better understanding of the mechanisms involved in the generation of fatigue, however often studies have produced dissociating results. The current study considered the task-related fatigue elicited by a tracking task requiring sustained attention, in order to evaluate the usefulness of various cardiovascular and oculomotor measures as indicators of fatigue. A secondary aim was to determine whether the behavioural and physiological parameter responses could be used to infer the type of fatigue incurred (i.e. an active versus passive fatigue state) as well as the energetical mechanisms involved during task performance. A simple driving simulator task was used as the main tracking task, requiring constant attention and concentration. This task was performed for approximately two hours. Three experimental groups (consisting of 14 subjects each) were used: a control group that performed the tracking task only, a group that performed a five minute auditory memory span task concurrently with the driving task after every 20 minutes of pure driving, and a group that performed a visual choice reaction task for five minutes following every 20 minute driving period. The secondary tasks were employed in order to evaluate the extent of resource allocation as well as arousal level. Performance measures included various driving performance parameters, as well as secondary task performance. Physiological measures included heart rate frequency (HR) and various time- and frequency-domain heart rate variability (HRV)parameters, pupil dilation, blink frequency and duration, fixations, and saccadic parameters as well as critical flicker fusion frequency (CFFF). The Borg CR-10 scale was used to evaluate subjective fatigue during the task, and the NASA-TLX was completed following the task. A decline in driving performance over time was supplemented by measures such as HR, HRV and pupil dilation indicating an increase in parasympathetic activity (or a reduction in arousal). An increase in blink frequency was considered as a sign of withdrawal of attentional resources over time. Longer and faster saccades were also evident over time, coupled with shorter fixations. With regards to the secondary task influence, the choice RT task did not affect any behavioural or physiological parameters, thereby contesting the active fatigue theory of resource depletion, as well as implying that the increase in demand for the same resources used by the primary task was insufficient to affect the state of the subjects. The increased load elicited by the memory span task improved driving performance and increased measures of HR, HRV, pupil dilation and blink frequency. Some of these measures produced opposite effects to what was expected; an attempt to explain the dissociation of the various physiological parameters was expressed in terms of arousal, effort and resource theories. Overall, the results indicate that the fatigue and/or reduced arousal accompanying a monotonous sustained attention task can, to some degree, be alleviated through intermittent performance of a secondary task engaging mental resources other than the ones used for the primary task. The degree to which such a task is beneficial, however, requires careful consideration as while an immediate increase in arousal and primary task performance is noted, the impact of the task on general attentional resources may be detrimental in the case of reacting should an emergency situation occur.
- Full Text:
- Date Issued: 2012
- Authors: De Gray Birch, Casey
- Date: 2012
- Subjects: Fatigue -- Physiological aspects -- Research , Attention -- Physiological aspects -- Research , Human engineering -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5120 , http://hdl.handle.net/10962/d1005198 , Fatigue -- Physiological aspects -- Research , Attention -- Physiological aspects -- Research , Human engineering -- Research
- Description: Despite extensive research into the concept of mental fatigue there is as yet no “gold standard” definition or measurement technique available. Because of this a large amount of fatigue-related errors are still seen in the workplace. The complexity of the problem lies with the inability to directly measure mental processes as well as the various endogenous and exogenous factors that interact to produce the experienced fatigue. Fatigue has been divided into sleep-related and task-related fatigue; however the task-related aspect is evident both during normal waking hours as well as during periods of sleep deprivation, therefore this aspect is considered important in the understanding of fatigue in general. The concept of task-related fatigue has further been divided into active and passive fatigue states; however differentiation between the two requires careful consideration. Various physiological measures have been employed in an attempt to gain a better understanding of the mechanisms involved in the generation of fatigue, however often studies have produced dissociating results. The current study considered the task-related fatigue elicited by a tracking task requiring sustained attention, in order to evaluate the usefulness of various cardiovascular and oculomotor measures as indicators of fatigue. A secondary aim was to determine whether the behavioural and physiological parameter responses could be used to infer the type of fatigue incurred (i.e. an active versus passive fatigue state) as well as the energetical mechanisms involved during task performance. A simple driving simulator task was used as the main tracking task, requiring constant attention and concentration. This task was performed for approximately two hours. Three experimental groups (consisting of 14 subjects each) were used: a control group that performed the tracking task only, a group that performed a five minute auditory memory span task concurrently with the driving task after every 20 minutes of pure driving, and a group that performed a visual choice reaction task for five minutes following every 20 minute driving period. The secondary tasks were employed in order to evaluate the extent of resource allocation as well as arousal level. Performance measures included various driving performance parameters, as well as secondary task performance. Physiological measures included heart rate frequency (HR) and various time- and frequency-domain heart rate variability (HRV)parameters, pupil dilation, blink frequency and duration, fixations, and saccadic parameters as well as critical flicker fusion frequency (CFFF). The Borg CR-10 scale was used to evaluate subjective fatigue during the task, and the NASA-TLX was completed following the task. A decline in driving performance over time was supplemented by measures such as HR, HRV and pupil dilation indicating an increase in parasympathetic activity (or a reduction in arousal). An increase in blink frequency was considered as a sign of withdrawal of attentional resources over time. Longer and faster saccades were also evident over time, coupled with shorter fixations. With regards to the secondary task influence, the choice RT task did not affect any behavioural or physiological parameters, thereby contesting the active fatigue theory of resource depletion, as well as implying that the increase in demand for the same resources used by the primary task was insufficient to affect the state of the subjects. The increased load elicited by the memory span task improved driving performance and increased measures of HR, HRV, pupil dilation and blink frequency. Some of these measures produced opposite effects to what was expected; an attempt to explain the dissociation of the various physiological parameters was expressed in terms of arousal, effort and resource theories. Overall, the results indicate that the fatigue and/or reduced arousal accompanying a monotonous sustained attention task can, to some degree, be alleviated through intermittent performance of a secondary task engaging mental resources other than the ones used for the primary task. The degree to which such a task is beneficial, however, requires careful consideration as while an immediate increase in arousal and primary task performance is noted, the impact of the task on general attentional resources may be detrimental in the case of reacting should an emergency situation occur.
- Full Text:
- Date Issued: 2012
Evaluation of groundwater potential using neotectonics and geophysics in the context of post Karoo tectonic framework around Fort Beaufort and Smithfield, Eastern Cape, South Africa
- Authors: Ndlovu, Nkosilathi
- Date: 2017
- Subjects: Neotectonics -- South Africa -- Eastern Cape Groundwater -- South Africa -- Eastern Cape Geophysical surveys -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12687 , vital:39299
- Description: Geological and geophysical methods were used to investigate the Karoo area extending from longitudes 25.50 E to 27.50 E and latitudes 300 S to 330 S in South Africa, particularly Fort Beaufort, Aliwal North, Venterstad and Smithfield. The geology of the area is dominated by the upper Beaufort Group (Adelaide Subgroup) with an extensive network of dolerite sills and dykes that intruded the sedimentary sequence. A relationship between neotectonics, post-Karoo tectonics, groundwater and lithology was investigated to locate suitable groundwater potential sites. Apart from studying the role of neotectonics and the post Karoo tectonics, this research aims at generating groundwater targets to alleviate water shortages mainly for farming and livestock, and prove that neotectonics is still active. Methodologies adopted for obtaining these results included a comprehensive literature review, thin section analysis, scanning electron microscopy, geophysical investigation (magnetic, gravity, and vertical electrical sounding), and the application of Geographical Information Systems (GIS) and remote sensing. Twenty samples were collected at various locations within the study area and were analyzed using the petrographic microscope while others were analyzed with the Scanning Electron Microscopic (SEM) combined with an Energy dispersive x-ray spectrometry. The results show that the rocks are fractured, porous and have variable mineralogy (presence of heavy minerals) within the rocks. The use of Geographical Information Systems (GIS) and remote sensing in geological surveys, especially hydrogeology, has gained momentum over the past few years. This research is no exception as ArcMap software was used to create a map of seismic epicentres of the Eastern Cape Province. From the map it can be observed that seismicity still occurs and thus leading to the notion of neotectonics being active. Lineaments were also automatically extracted using the ENVI 5.1 and Geomatica 2013 software. Lineaments are zones of weakness in the subsurface of the Earth and are very important in locating groundwater potential sites. Geophysical techniques are essential and highly accurate for groundwater studies. Gravity and magnetic techniques were applied on data which was supplied as grids. Analysis using Geosoft Oasis 8.3 revealed extensive lineaments and ring like patterns and these were inferred to be dolerite intrusions (sills and dykes). The morphology of the intrusions help in identifying possible groundwater potential zones and thus they should be investigated. Vertical electrical sounding (VES) technique using the Schlumberger array was carried out at three sites (Fort Beaufort fracture which is possibly related to Quaternary surface uplift of the Amatole-Swaziland axis, splay of the Fort Beaufort fracture and at a site which showed high groundwater potential) to explore subsurface layering. IP2win (lite), 1-D modelling software was used to model the apparent resistivity data to obtain the geoelectric parameters of the subsurface (thickness and resistivity). The VES results are consistent with fractured rocks that aid groundwater movement. The VES data for the three sites was further modelled by the RES2DINV software and this shows low resistivity values associated with loose, water saturated top sandy soil and higher resistivity values associated with sedimentary sequences and dolerite. Moreover, potential sites for citing wells are predicted to be between 79.5 and 128 m on the profile. Further neotectonic studies need to be done, especially on the quaternary sediments as they would have more neotectonic evidence. The use of geophysical techniques for groundwater search need to be intensified, with more emphasis being put to the sedimentary sequences bordered by dolerite intrusions and fractured zones.
- Full Text:
- Date Issued: 2017
- Authors: Ndlovu, Nkosilathi
- Date: 2017
- Subjects: Neotectonics -- South Africa -- Eastern Cape Groundwater -- South Africa -- Eastern Cape Geophysical surveys -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12687 , vital:39299
- Description: Geological and geophysical methods were used to investigate the Karoo area extending from longitudes 25.50 E to 27.50 E and latitudes 300 S to 330 S in South Africa, particularly Fort Beaufort, Aliwal North, Venterstad and Smithfield. The geology of the area is dominated by the upper Beaufort Group (Adelaide Subgroup) with an extensive network of dolerite sills and dykes that intruded the sedimentary sequence. A relationship between neotectonics, post-Karoo tectonics, groundwater and lithology was investigated to locate suitable groundwater potential sites. Apart from studying the role of neotectonics and the post Karoo tectonics, this research aims at generating groundwater targets to alleviate water shortages mainly for farming and livestock, and prove that neotectonics is still active. Methodologies adopted for obtaining these results included a comprehensive literature review, thin section analysis, scanning electron microscopy, geophysical investigation (magnetic, gravity, and vertical electrical sounding), and the application of Geographical Information Systems (GIS) and remote sensing. Twenty samples were collected at various locations within the study area and were analyzed using the petrographic microscope while others were analyzed with the Scanning Electron Microscopic (SEM) combined with an Energy dispersive x-ray spectrometry. The results show that the rocks are fractured, porous and have variable mineralogy (presence of heavy minerals) within the rocks. The use of Geographical Information Systems (GIS) and remote sensing in geological surveys, especially hydrogeology, has gained momentum over the past few years. This research is no exception as ArcMap software was used to create a map of seismic epicentres of the Eastern Cape Province. From the map it can be observed that seismicity still occurs and thus leading to the notion of neotectonics being active. Lineaments were also automatically extracted using the ENVI 5.1 and Geomatica 2013 software. Lineaments are zones of weakness in the subsurface of the Earth and are very important in locating groundwater potential sites. Geophysical techniques are essential and highly accurate for groundwater studies. Gravity and magnetic techniques were applied on data which was supplied as grids. Analysis using Geosoft Oasis 8.3 revealed extensive lineaments and ring like patterns and these were inferred to be dolerite intrusions (sills and dykes). The morphology of the intrusions help in identifying possible groundwater potential zones and thus they should be investigated. Vertical electrical sounding (VES) technique using the Schlumberger array was carried out at three sites (Fort Beaufort fracture which is possibly related to Quaternary surface uplift of the Amatole-Swaziland axis, splay of the Fort Beaufort fracture and at a site which showed high groundwater potential) to explore subsurface layering. IP2win (lite), 1-D modelling software was used to model the apparent resistivity data to obtain the geoelectric parameters of the subsurface (thickness and resistivity). The VES results are consistent with fractured rocks that aid groundwater movement. The VES data for the three sites was further modelled by the RES2DINV software and this shows low resistivity values associated with loose, water saturated top sandy soil and higher resistivity values associated with sedimentary sequences and dolerite. Moreover, potential sites for citing wells are predicted to be between 79.5 and 128 m on the profile. Further neotectonic studies need to be done, especially on the quaternary sediments as they would have more neotectonic evidence. The use of geophysical techniques for groundwater search need to be intensified, with more emphasis being put to the sedimentary sequences bordered by dolerite intrusions and fractured zones.
- Full Text:
- Date Issued: 2017
A comparative mineralogical and geochemical study of manganese deposits in the Postmasburg Manganese Field, South Africa
- Authors: Thokoa, Mamello
- Date: 2020
- Subjects: Manganese ores -- South Africa -- Postmasburg , Geology -- South Africa -- Postmasburg
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/167609 , vital:41496
- Description: The Postmasburg Manganese Field (PMF), located in the Northern Cape Province of South Africa, is host to some of the largest deposits of iron and manganese metal in the world. These deposits are restricted to a geographical area known as the Maremane Dome, an anticlinal structure defined by folded dolostones of the Campbellrand Subgroup and overlying ironformations of the Asbestos Hills Subgroup of the Neoarchaean-Palaeproterozoic Transvaal Supergroup. Manganese ores associated with the Maremane Dome have been divided into two major classes in the literature: the Wolhaarkop breccia-hosted massive ores of the Eastern Belt, as well as the shale-associated ores of the Western Belt. The Eastern Belt ores have been classed as siliceous in nature, while the Western Belt deposits are reported to be typically ferruginous. These divisions were made based on their varying bulk chemical and mineralogical compositions in conjunction with their different stratigraphic sub-settings. Presently, both deposit types are explained as variants of supergene mineralisation that would have formed through a combination of intense ancient lateritic weathering in the presence of oxygen, extreme residual enrichments in Mn (and Fe), and accumulations in karstic depressions at the expense of underlying manganiferous dolostones. This study revisits these deposits and their origins by sampling representative end-member examples of both Eastern Belt and Western Belt manganese ores in both drillcore (localities Khumani, McCarthy and Leeuwfontein), and outcrop sections (locality Bishop). In an attempt to provide new insights into the processes responsible for the genesis of these deposits, the possibility of hydrothermal influences and associated metasomatic replacement processes is explored in this thesis. This was achieved using standard petrographic and mineralogical techniques (transmitted and reflected light microscopy, XRD , SEM-EDS and EMPA), coupled with bulk-rock geochemical analysis of the same samples using a combination of XRF and LAICP- MS analyses. Combination of field observations, petrographic and mineralogical results, and geochemical data allowed for the re-assessment of the different ore types encountered in the field. Comparative considerations made between the bulk geochemistry of the different end-member ore types revealed no clear-cut compositional distinctions and therefore do not support existing classifications between siliceous (Eastern Belt) and ferruginous (Western Belt) ores. This is supported by trace and REE element data as well, when normalised against average shale. The geochemistry reflects the bulk mineralogy of the ores which is broadly comparable, whereby braunite and hematite appear to be dominant co-existing minerals in both Eastern Belt (Khumani) and Western Belt (Bishop) ore. In the case of the McCarthy locality, manganese ore is cryptomelane-rich and appears to have involved recent supergene overprint over Eastern Belt type ore, whereas the Leeuwfontein ores are far more ferruginous than at any other locality studied and therefore represent a more complex, hybrid type of oxide-rich Mn mineralisation (mainly bixbyitic) within massive hematite iron ore. In terms of gangue mineralogy, the ores share some close similarities through the omnipresence of barite, and the abundance of alkalirich silicate minerals. Eastern Belt ores contain abundant albite and serandite whereas the main alkali-rich phase in Western Belt ores is the mineral ephesite. In both cases, Na contents are therefore high at several wt% levels registered in selected samples. The afore-mentioned alkali enrichments have been variously reported for both these deposit types. The occurrence of high alkalis cannot be explained through classic residual or aqueous supergene systems of ore formation, as proposed in prevailing genetic models in the literature. Together with the detection of halogens such as F and Br through SEM-EDS analyses of ore from both belts, the alkali enrichments suggest possible hydrothermal processes of ore formation involving circulation of metalliferous sodic brines. Selected textural evidence from samples from both ore belts lends support to fluid-related models and allow the proposal for a common hydrothermal-replacement model to have been responsible for ore formation across the broader Maremane Dome region.
- Full Text:
- Date Issued: 2020
- Authors: Thokoa, Mamello
- Date: 2020
- Subjects: Manganese ores -- South Africa -- Postmasburg , Geology -- South Africa -- Postmasburg
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/167609 , vital:41496
- Description: The Postmasburg Manganese Field (PMF), located in the Northern Cape Province of South Africa, is host to some of the largest deposits of iron and manganese metal in the world. These deposits are restricted to a geographical area known as the Maremane Dome, an anticlinal structure defined by folded dolostones of the Campbellrand Subgroup and overlying ironformations of the Asbestos Hills Subgroup of the Neoarchaean-Palaeproterozoic Transvaal Supergroup. Manganese ores associated with the Maremane Dome have been divided into two major classes in the literature: the Wolhaarkop breccia-hosted massive ores of the Eastern Belt, as well as the shale-associated ores of the Western Belt. The Eastern Belt ores have been classed as siliceous in nature, while the Western Belt deposits are reported to be typically ferruginous. These divisions were made based on their varying bulk chemical and mineralogical compositions in conjunction with their different stratigraphic sub-settings. Presently, both deposit types are explained as variants of supergene mineralisation that would have formed through a combination of intense ancient lateritic weathering in the presence of oxygen, extreme residual enrichments in Mn (and Fe), and accumulations in karstic depressions at the expense of underlying manganiferous dolostones. This study revisits these deposits and their origins by sampling representative end-member examples of both Eastern Belt and Western Belt manganese ores in both drillcore (localities Khumani, McCarthy and Leeuwfontein), and outcrop sections (locality Bishop). In an attempt to provide new insights into the processes responsible for the genesis of these deposits, the possibility of hydrothermal influences and associated metasomatic replacement processes is explored in this thesis. This was achieved using standard petrographic and mineralogical techniques (transmitted and reflected light microscopy, XRD , SEM-EDS and EMPA), coupled with bulk-rock geochemical analysis of the same samples using a combination of XRF and LAICP- MS analyses. Combination of field observations, petrographic and mineralogical results, and geochemical data allowed for the re-assessment of the different ore types encountered in the field. Comparative considerations made between the bulk geochemistry of the different end-member ore types revealed no clear-cut compositional distinctions and therefore do not support existing classifications between siliceous (Eastern Belt) and ferruginous (Western Belt) ores. This is supported by trace and REE element data as well, when normalised against average shale. The geochemistry reflects the bulk mineralogy of the ores which is broadly comparable, whereby braunite and hematite appear to be dominant co-existing minerals in both Eastern Belt (Khumani) and Western Belt (Bishop) ore. In the case of the McCarthy locality, manganese ore is cryptomelane-rich and appears to have involved recent supergene overprint over Eastern Belt type ore, whereas the Leeuwfontein ores are far more ferruginous than at any other locality studied and therefore represent a more complex, hybrid type of oxide-rich Mn mineralisation (mainly bixbyitic) within massive hematite iron ore. In terms of gangue mineralogy, the ores share some close similarities through the omnipresence of barite, and the abundance of alkalirich silicate minerals. Eastern Belt ores contain abundant albite and serandite whereas the main alkali-rich phase in Western Belt ores is the mineral ephesite. In both cases, Na contents are therefore high at several wt% levels registered in selected samples. The afore-mentioned alkali enrichments have been variously reported for both these deposit types. The occurrence of high alkalis cannot be explained through classic residual or aqueous supergene systems of ore formation, as proposed in prevailing genetic models in the literature. Together with the detection of halogens such as F and Br through SEM-EDS analyses of ore from both belts, the alkali enrichments suggest possible hydrothermal processes of ore formation involving circulation of metalliferous sodic brines. Selected textural evidence from samples from both ore belts lends support to fluid-related models and allow the proposal for a common hydrothermal-replacement model to have been responsible for ore formation across the broader Maremane Dome region.
- Full Text:
- Date Issued: 2020
The sustainability of rural sanitation facilities in municipalities
- Authors: Maxwele, Zukani
- Date: 2013
- Subjects: Sanitation, Rural -- South Africa -- Eastern Cape , Sanitary engineering -- South Africa -- Eastern Cape , Sewage disposal, Rural -- South Africa -- Eastern Cape , Rural development projects -- South Africa -- Citizen participation , Municipal services -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9713 , http://hdl.handle.net/10948/d1020580
- Description: Progress has been made in eradicating the backlog in sanitation. This is reflected by the 2011 Census results that reflect a 21 percent increase in the provision of sanitation between the 2001 Census and the 2011 Census. In the rural areas of O.R. Tambo District Municipality, the eradication of sanitation backlogs is done through the provision of VIPs for sanitation. Even with this progress, there are still challenges resulting from the previously constructed sanitation facilities. Some of the challenges relate to the poor quality of these facilities. Community members – via the IDP road shows have voiced their unhappiness with regard to some of the sustainability factors of these structures. Community members feel they were not involved in decisions related to the sanitation projects. It has also been observed that the municipality and its agents do not conduct environmental management studies; and some pits of these structures were not lined, and the health and hygiene training, together with post-construction assessment was not done. In this study, an assessment of the provision of sanitation facilities, in order to identify some of the key factors that are critical to the sustainability of rural sanitation facilities, was done. The research findings should be helpful in assisting local government to improve the provision of sanitation facilities, with the aim of ensuring sustainability, improving community satisfaction, and improving the quality of life for the people living in these villages. For the purpose of the study, a quantitative research approach was used. A research questionnaire was used to collect the data; and it was distributed through email to a sample of respondents that understood sanitation issues. The data were collected from municipal officials, consultants working on sanitation projects, as well as other stakeholders with influence and an interest in sanitation. The results were analysed to establish the findings and to propose recommendations, in order to improve the sustainability of rural sanitation facilities. From the research findings, the recommendations highlighted the need for an improved participatory approach in implementing sanitation projects. To ensure sustainability, the following issues are key: monitoring and supervision; community participation and adherence to design guidelines; a review of the sanitation provision policy; as well as the promotion of health and hygiene.
- Full Text:
- Date Issued: 2013
- Authors: Maxwele, Zukani
- Date: 2013
- Subjects: Sanitation, Rural -- South Africa -- Eastern Cape , Sanitary engineering -- South Africa -- Eastern Cape , Sewage disposal, Rural -- South Africa -- Eastern Cape , Rural development projects -- South Africa -- Citizen participation , Municipal services -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9713 , http://hdl.handle.net/10948/d1020580
- Description: Progress has been made in eradicating the backlog in sanitation. This is reflected by the 2011 Census results that reflect a 21 percent increase in the provision of sanitation between the 2001 Census and the 2011 Census. In the rural areas of O.R. Tambo District Municipality, the eradication of sanitation backlogs is done through the provision of VIPs for sanitation. Even with this progress, there are still challenges resulting from the previously constructed sanitation facilities. Some of the challenges relate to the poor quality of these facilities. Community members – via the IDP road shows have voiced their unhappiness with regard to some of the sustainability factors of these structures. Community members feel they were not involved in decisions related to the sanitation projects. It has also been observed that the municipality and its agents do not conduct environmental management studies; and some pits of these structures were not lined, and the health and hygiene training, together with post-construction assessment was not done. In this study, an assessment of the provision of sanitation facilities, in order to identify some of the key factors that are critical to the sustainability of rural sanitation facilities, was done. The research findings should be helpful in assisting local government to improve the provision of sanitation facilities, with the aim of ensuring sustainability, improving community satisfaction, and improving the quality of life for the people living in these villages. For the purpose of the study, a quantitative research approach was used. A research questionnaire was used to collect the data; and it was distributed through email to a sample of respondents that understood sanitation issues. The data were collected from municipal officials, consultants working on sanitation projects, as well as other stakeholders with influence and an interest in sanitation. The results were analysed to establish the findings and to propose recommendations, in order to improve the sustainability of rural sanitation facilities. From the research findings, the recommendations highlighted the need for an improved participatory approach in implementing sanitation projects. To ensure sustainability, the following issues are key: monitoring and supervision; community participation and adherence to design guidelines; a review of the sanitation provision policy; as well as the promotion of health and hygiene.
- Full Text:
- Date Issued: 2013
The pineal gland as a model to elucidate the primary mode of action of sympathoactive agents
- Authors: Welman, Alan David
- Date: 1991
- Subjects: Pineal gland , Cythochemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3876 , http://hdl.handle.net/10962/d1001610
- Description: An attempt was made to use the pineal gland as a model for the study of the primary mode of action of sympathoactive agents. Two drugs were investigated, viz. alpha-methyldopa and ephedrine whose mode of action is not entirely clear. Organ cultures of pineal glands from rats treated chronically with alpha-methyldopa showed enhanced conversion of radioactive serotonin to melatonin (aMT) , as well as its precursor Nacetylserotonin (aHT). This treatment was also found to raise Nacetyltransferase (NAT) activity. These increases associated with alpha-methyldopa treatment were further enhanced by the beta-adrenergic agonist, isoproterenol, suggesting a supersensitivity-type effect occurring at the level of the beta-receptor. A subsequent binding study, however, showed a decrease in beta-receptor binding with exposure to alpha-methyldopa, providing mitigating evidence against the occurrence of a supersensitivity phenomenon. It is possible that a metabolite of alpha-methyldopa acts as an alpha 1 and beta-adrenergic agonist, resulting in greater melatonin (aMT) and N-acetylserotonin (aHT) synthesis than by a beta-adrenergic agonist, isoproterenol. Combined treatment of pineals with alpha-methyldopa and an alphareceptor blocker, phentolamine, resulted in melatonin (aMT) , Nacetylserotonin (aHT) , and N-acetyltransferase (NAT) activity levels which were lower than those obtained with alpha-methyldopa treatment alone, thus confirming the alpha-adrenergic activity of the metabolite of alpha-methyldopa. Additional pineal metabolites were isolated and measured simultaneously in the organ culture experiments. Organ cultures of rat pineal glands treated with ephedrine showed raised levels of melatonin (aMT) and N-acetylserotonin (aHT). Treatment with ephedrine also produced raised N-acetyltransferase activity. A further enhancement of these parameters was induced by norepinephrine, suggesting a supersensitivity-type effect occurring at the level of the beta-adrenergic receptor. Rats were treated with reserpine (a norepinephrine depleter) and the pineals exposed to ephedrine. Endogenous norepinephrine normally released by the action of ephedrine was thus absent, and under these conditions, levels of melatonin (aMT) and N-acetylserotonin (aHT) were reduced. N-acetyltransferase (NAT) activity was also reduced, but maintained levels pointing to substantial adrenergic activity of ephedrine as well as norepinephrine released by virtue of the drug's action. A subsequent binding study showed a decrease in beta-adrenergic receptor binding with exposure to ephedrine and a further decrease in ephedrine treated pineals from reserpine treated rats, thus ruling out the occurrence of a supersensitivity phenomenon. It is possible that both ephedrine and released norepinephrine have alpha- and beta-receptor activity. Additional pineal metabolites were isolated and measured in the organ culture experiments. A 16-hour time profile of the production of melatonin (aMT) and N-acetylserotonin (aHT) with norepinephrine and ephedrine treatment provided useful information regarding the course of action of the two agents. A pineal cell-culture system was developed and exposed to ephedrine and norepinephrine. N-acetyltransferase (NAT) activity levels measured after exposure to these agents were raised, confirming the adrenergic activity of both in the model. Finally, an HPLC system coupled to a UV detector was used in an attempt to measure melatonin (aMT) extracted from pineal organ culture media. The results showed that melatonin could be measured by this method, however, a more sensitive detection system was recommended for future work.
- Full Text:
- Date Issued: 1991
- Authors: Welman, Alan David
- Date: 1991
- Subjects: Pineal gland , Cythochemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3876 , http://hdl.handle.net/10962/d1001610
- Description: An attempt was made to use the pineal gland as a model for the study of the primary mode of action of sympathoactive agents. Two drugs were investigated, viz. alpha-methyldopa and ephedrine whose mode of action is not entirely clear. Organ cultures of pineal glands from rats treated chronically with alpha-methyldopa showed enhanced conversion of radioactive serotonin to melatonin (aMT) , as well as its precursor Nacetylserotonin (aHT). This treatment was also found to raise Nacetyltransferase (NAT) activity. These increases associated with alpha-methyldopa treatment were further enhanced by the beta-adrenergic agonist, isoproterenol, suggesting a supersensitivity-type effect occurring at the level of the beta-receptor. A subsequent binding study, however, showed a decrease in beta-receptor binding with exposure to alpha-methyldopa, providing mitigating evidence against the occurrence of a supersensitivity phenomenon. It is possible that a metabolite of alpha-methyldopa acts as an alpha 1 and beta-adrenergic agonist, resulting in greater melatonin (aMT) and N-acetylserotonin (aHT) synthesis than by a beta-adrenergic agonist, isoproterenol. Combined treatment of pineals with alpha-methyldopa and an alphareceptor blocker, phentolamine, resulted in melatonin (aMT) , Nacetylserotonin (aHT) , and N-acetyltransferase (NAT) activity levels which were lower than those obtained with alpha-methyldopa treatment alone, thus confirming the alpha-adrenergic activity of the metabolite of alpha-methyldopa. Additional pineal metabolites were isolated and measured simultaneously in the organ culture experiments. Organ cultures of rat pineal glands treated with ephedrine showed raised levels of melatonin (aMT) and N-acetylserotonin (aHT). Treatment with ephedrine also produced raised N-acetyltransferase activity. A further enhancement of these parameters was induced by norepinephrine, suggesting a supersensitivity-type effect occurring at the level of the beta-adrenergic receptor. Rats were treated with reserpine (a norepinephrine depleter) and the pineals exposed to ephedrine. Endogenous norepinephrine normally released by the action of ephedrine was thus absent, and under these conditions, levels of melatonin (aMT) and N-acetylserotonin (aHT) were reduced. N-acetyltransferase (NAT) activity was also reduced, but maintained levels pointing to substantial adrenergic activity of ephedrine as well as norepinephrine released by virtue of the drug's action. A subsequent binding study showed a decrease in beta-adrenergic receptor binding with exposure to ephedrine and a further decrease in ephedrine treated pineals from reserpine treated rats, thus ruling out the occurrence of a supersensitivity phenomenon. It is possible that both ephedrine and released norepinephrine have alpha- and beta-receptor activity. Additional pineal metabolites were isolated and measured in the organ culture experiments. A 16-hour time profile of the production of melatonin (aMT) and N-acetylserotonin (aHT) with norepinephrine and ephedrine treatment provided useful information regarding the course of action of the two agents. A pineal cell-culture system was developed and exposed to ephedrine and norepinephrine. N-acetyltransferase (NAT) activity levels measured after exposure to these agents were raised, confirming the adrenergic activity of both in the model. Finally, an HPLC system coupled to a UV detector was used in an attempt to measure melatonin (aMT) extracted from pineal organ culture media. The results showed that melatonin could be measured by this method, however, a more sensitive detection system was recommended for future work.
- Full Text:
- Date Issued: 1991
Treatment and care of children and adolescents diagnosed with Attention deficit/Hyperactivity disorder
- Authors: Snyman, Sanmari
- Date: 2008
- Subjects: Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10144 , http://hdl.handle.net/10948/871 , Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Description: Background: In recent years the incidence of Attention Deficit/Hyperactivity Disorder (ADHD) has increased. Objectives: The primary aim of the study was to determine the treatment of children and adolescents diagnosed with ADHD in South Africa and more specifically the Eastern Cape. Methods: The study consisted of two parts, a retrospective drug utilisation study and a questionnaire survey. The drug utilisation study was conducted on chronic medication records of a private sector medical scheme administrator and contained records from 1994 to 2006. A total of 42 250 records representing 8 274 patients and 4 001 families, were analysed. The questionnaire survey was conducted in the Eastern Cape. The questionnaires were distributed by responsible pharmacists to parents of children receiving medication for the treatment of ADHD from his/her pharmacy. Fifty one completed questionnaires were analysed. Results: The average age of patients in the drug utilisation study were 14.28 (SD = 5.50) years. Males represented 77.37 percent of patients. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product, followed by Ritalin® LA 20 mg. The two most frequently prescribed active ingredients apart from methylphenidate were fluticasone and budesonide. The two most common comorbid conditions were allergic rhinitis and asthma. The average age of patients in the questionnaire survey was 10.26 (SD = 2.51) years. Males represented 73.58 percent of patients. A third of patients had relatives previously diagnosed with ADHD. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product. Conclusion: ADHD is a complex life-long disorder. It does not only affect the child diagnosed with the disorder, but also has effects on the family, schooling system and peer relationship. Therefore, more studies regarding the incidence and treatment of ADHD need to be conducted in South Africa.
- Full Text:
- Date Issued: 2008
- Authors: Snyman, Sanmari
- Date: 2008
- Subjects: Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10144 , http://hdl.handle.net/10948/871 , Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Description: Background: In recent years the incidence of Attention Deficit/Hyperactivity Disorder (ADHD) has increased. Objectives: The primary aim of the study was to determine the treatment of children and adolescents diagnosed with ADHD in South Africa and more specifically the Eastern Cape. Methods: The study consisted of two parts, a retrospective drug utilisation study and a questionnaire survey. The drug utilisation study was conducted on chronic medication records of a private sector medical scheme administrator and contained records from 1994 to 2006. A total of 42 250 records representing 8 274 patients and 4 001 families, were analysed. The questionnaire survey was conducted in the Eastern Cape. The questionnaires were distributed by responsible pharmacists to parents of children receiving medication for the treatment of ADHD from his/her pharmacy. Fifty one completed questionnaires were analysed. Results: The average age of patients in the drug utilisation study were 14.28 (SD = 5.50) years. Males represented 77.37 percent of patients. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product, followed by Ritalin® LA 20 mg. The two most frequently prescribed active ingredients apart from methylphenidate were fluticasone and budesonide. The two most common comorbid conditions were allergic rhinitis and asthma. The average age of patients in the questionnaire survey was 10.26 (SD = 2.51) years. Males represented 73.58 percent of patients. A third of patients had relatives previously diagnosed with ADHD. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product. Conclusion: ADHD is a complex life-long disorder. It does not only affect the child diagnosed with the disorder, but also has effects on the family, schooling system and peer relationship. Therefore, more studies regarding the incidence and treatment of ADHD need to be conducted in South Africa.
- Full Text:
- Date Issued: 2008
Restoration of degraded subtropical thickets in the Baviaanskloof Megareserve, South Africa: the role of carbon stocks and Portulacaria afra survivorship
- Authors: Powell, Michael John
- Date: 2009
- Subjects: Portulacaria afra -- South Africa -- Eastern Cape , Portulacaceae -- South Africa -- Eastern Cape , Biodiversity conservation -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Shrubs -- South Africa -- Eastern Cape , Succulent plants -- South Africa -- Eastern Cape , Baviaanskloof (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4764 , http://hdl.handle.net/10962/d1007164 , Portulacaria afra -- South Africa -- Eastern Cape , Portulacaceae -- South Africa -- Eastern Cape , Biodiversity conservation -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Shrubs -- South Africa -- Eastern Cape , Succulent plants -- South Africa -- Eastern Cape , Baviaanskloof (South Africa)
- Description: The semi-arid forms of subtropical thicket in the Eastern and Western Cape have been heavily degraded through unsustainable pastoralism over the last century or more. The degraded areas exhibit a significant loss of above-ground and belowground carbon stocks, and consequently provide an opportunity for restoration through the formal and informal carbon markets. A prerequisite for the attainment of carbon credits is to ensure sound carbon stock baselines prior to effecting restoration. I report on the carbon stocks (including sub-pools) for a number of intact subtropical thicket types, as well as the differentials between the intact and degraded states (including the sub-pools). Total carbon stocks (TCS in t C ha⁻¹) for intact vegetation (to a soil depth 0–25 cm), ranged from 87.73±6.51 to 70.64±17.24. For degraded vegetation (including old lands), TCS (t C ha⁻¹) ranged from 34.05±3.61 to 21.03±2.70. For all vegetation types, the differentials in TCS along the degradation gradient (0–25 cm) are highly significant and strengthen the possibility for carbon credit financing to catalyse the restoration of the degraded semi-arid subtropical thickets. This study has shown a mean loss of 57.23 t C ha⁻¹ in Baviaanskloof spekboom thickets, when measured to a soil depth of 25 cm. Portulacaria afra is a key species within the semi-arid subtropical thickets, being a canopy dominant and a driver of soil nutrient status, but has been largely lost from the degraded landscapes. Degraded semi-arid subtropical thicket vegetation lacks regeneration via seedling recruitment; restoration therefore requires the manual replanting of P. afra using cut truncheons. Survivorship trials were undertaken infield in 2005 to establish restoration protocols for P. afra, with survivorship being recorded in 2006 and 2008. Overall survivorship for all treatments was found to be 43.2±2.8% in 2006, dropping to 35.8±2.7% in 2008. Planting posture (flat or upright) showed the most significant results of all the factors tested in 2006 and 2008. Micro-damming also influenced survivorship in that micro-damming was associated with marginally higher survivorship (47.4 ±2.0% with damming vs. 39.1±1.5% without damming in 2006, and 39.3±1.9% vs. 32.3±1.5% in 2008). Higher planting density only showed a significant positive impact on survivorship in 2008. Neither stem diameter nor clumping significantly affected degree of survival. A key finding in the study has been the non-static nature of P. afra truncheon survivorship, even after being well established (three years since planting). The results from the study will guide the restoration protocols for the restoration of degraded subtropical thickets, where P. afra requires replanting.
- Full Text:
- Date Issued: 2009
- Authors: Powell, Michael John
- Date: 2009
- Subjects: Portulacaria afra -- South Africa -- Eastern Cape , Portulacaceae -- South Africa -- Eastern Cape , Biodiversity conservation -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Shrubs -- South Africa -- Eastern Cape , Succulent plants -- South Africa -- Eastern Cape , Baviaanskloof (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4764 , http://hdl.handle.net/10962/d1007164 , Portulacaria afra -- South Africa -- Eastern Cape , Portulacaceae -- South Africa -- Eastern Cape , Biodiversity conservation -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Shrubs -- South Africa -- Eastern Cape , Succulent plants -- South Africa -- Eastern Cape , Baviaanskloof (South Africa)
- Description: The semi-arid forms of subtropical thicket in the Eastern and Western Cape have been heavily degraded through unsustainable pastoralism over the last century or more. The degraded areas exhibit a significant loss of above-ground and belowground carbon stocks, and consequently provide an opportunity for restoration through the formal and informal carbon markets. A prerequisite for the attainment of carbon credits is to ensure sound carbon stock baselines prior to effecting restoration. I report on the carbon stocks (including sub-pools) for a number of intact subtropical thicket types, as well as the differentials between the intact and degraded states (including the sub-pools). Total carbon stocks (TCS in t C ha⁻¹) for intact vegetation (to a soil depth 0–25 cm), ranged from 87.73±6.51 to 70.64±17.24. For degraded vegetation (including old lands), TCS (t C ha⁻¹) ranged from 34.05±3.61 to 21.03±2.70. For all vegetation types, the differentials in TCS along the degradation gradient (0–25 cm) are highly significant and strengthen the possibility for carbon credit financing to catalyse the restoration of the degraded semi-arid subtropical thickets. This study has shown a mean loss of 57.23 t C ha⁻¹ in Baviaanskloof spekboom thickets, when measured to a soil depth of 25 cm. Portulacaria afra is a key species within the semi-arid subtropical thickets, being a canopy dominant and a driver of soil nutrient status, but has been largely lost from the degraded landscapes. Degraded semi-arid subtropical thicket vegetation lacks regeneration via seedling recruitment; restoration therefore requires the manual replanting of P. afra using cut truncheons. Survivorship trials were undertaken infield in 2005 to establish restoration protocols for P. afra, with survivorship being recorded in 2006 and 2008. Overall survivorship for all treatments was found to be 43.2±2.8% in 2006, dropping to 35.8±2.7% in 2008. Planting posture (flat or upright) showed the most significant results of all the factors tested in 2006 and 2008. Micro-damming also influenced survivorship in that micro-damming was associated with marginally higher survivorship (47.4 ±2.0% with damming vs. 39.1±1.5% without damming in 2006, and 39.3±1.9% vs. 32.3±1.5% in 2008). Higher planting density only showed a significant positive impact on survivorship in 2008. Neither stem diameter nor clumping significantly affected degree of survival. A key finding in the study has been the non-static nature of P. afra truncheon survivorship, even after being well established (three years since planting). The results from the study will guide the restoration protocols for the restoration of degraded subtropical thickets, where P. afra requires replanting.
- Full Text:
- Date Issued: 2009
Neogene fluvial deposits along the south-west coast of South Africa understanding the palaeoclimate through proxies
- Authors: Sciscio, Lara
- Date: 2011
- Subjects: Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4981 , http://hdl.handle.net/10962/d1005593 , Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Description: Branched glycerol dialkyl glycerol tetraether (GDGTs) membrane lipids have been used as a new proxy for the reconstruction of terrestrial palaeoclimates. These biomarkers (or molecular ‗fossils‘) in conjunction with palynology, have been effective in the novel analysis of Miocene organic-rich sediments from three South African west coast sites at Rondeberg, Noordhoek and Langebaanweg. Lastly, a Quaternary south coast site at Rietvlei, South Africa, was also studied to further elucidate the extent of use of this new proxy. The fluvial peat and organic-rich deposits of the Elandsfontyn Formation (Sandveld Group) were investigated at Noordhoek, Langebaanweg and Rondeberg to provide new evidence for the climate and vegetation patterns during Miocene in this region. Drill-core and quarry samples from all four sites were freeze-dried, powered, and prepared for biogeochemical and palynological analyses. The methylation index of branched tetraethers (MBT) and cyclisation ratio of branched tetraethers (CBT) proxies were used to calculate the mean annual air temperature (MAAT) and pH values of the organic-rich horizons at time of deposition. The Branched versus isoprenoid index of tetraethers (BIT) was used to assess the relative contributions of marine archaeal and terrestrial bacterial tetraethers, and thereby assess the validity of the MBT, CBT and calculated palaeoenvironmental factors. The results presented in this thesis suggest that the use of the MBT/CBT proxy has significant potential in southern Africa, and may complement previously attempted palaeoclimatic and palaeoecological studies of Neogene-aged South African sediments. This type of research has the capacity to provide palaeoenvironmental information where other proxies may be absent. Results indicate that all sites yielded branched tetraether membrane lipids with the exception of Rondeberg, where GDGTs were below detection as a result of poor preservation conditions. Palynological investigation confirmed proxy derived temperatures. Furthermore palynomorph analyses supplemented earlier studies of the Noordhoek site and were piloted for the Rondeberg site, reaffirming alternating sequences of tropical and subtropical palynofloras. The MAATs, likewise, show variability and pronounced trends through time at the Langebaanweg and Noordhoek sites, generally corresponding with the variation and diversity of the pollen population. The terrestrial MAAT results appear to compliment Southern Hemisphere sea level changes associated with Antarctic glaciations. Additionally, this data shows a pattern similar to the Southern and Northern Hemisphere marine isotope records of relative fluctuations in the global climate and sea level change from the early to middle Miocene. The application of these past climate change indicators have been proved to be useful in the reconstruction of South Africa Miocene palaeoclimates, and may aid in understanding the consequences of climate change in the Cape region.
- Full Text:
- Date Issued: 2011
- Authors: Sciscio, Lara
- Date: 2011
- Subjects: Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4981 , http://hdl.handle.net/10962/d1005593 , Alluvium , Paleoclimatology -- South Africa , Paleoecology -- Miocene -- South Africa , Paleobotany -- Miocene -- South Africa , Paleogeography -- South Africa
- Description: Branched glycerol dialkyl glycerol tetraether (GDGTs) membrane lipids have been used as a new proxy for the reconstruction of terrestrial palaeoclimates. These biomarkers (or molecular ‗fossils‘) in conjunction with palynology, have been effective in the novel analysis of Miocene organic-rich sediments from three South African west coast sites at Rondeberg, Noordhoek and Langebaanweg. Lastly, a Quaternary south coast site at Rietvlei, South Africa, was also studied to further elucidate the extent of use of this new proxy. The fluvial peat and organic-rich deposits of the Elandsfontyn Formation (Sandveld Group) were investigated at Noordhoek, Langebaanweg and Rondeberg to provide new evidence for the climate and vegetation patterns during Miocene in this region. Drill-core and quarry samples from all four sites were freeze-dried, powered, and prepared for biogeochemical and palynological analyses. The methylation index of branched tetraethers (MBT) and cyclisation ratio of branched tetraethers (CBT) proxies were used to calculate the mean annual air temperature (MAAT) and pH values of the organic-rich horizons at time of deposition. The Branched versus isoprenoid index of tetraethers (BIT) was used to assess the relative contributions of marine archaeal and terrestrial bacterial tetraethers, and thereby assess the validity of the MBT, CBT and calculated palaeoenvironmental factors. The results presented in this thesis suggest that the use of the MBT/CBT proxy has significant potential in southern Africa, and may complement previously attempted palaeoclimatic and palaeoecological studies of Neogene-aged South African sediments. This type of research has the capacity to provide palaeoenvironmental information where other proxies may be absent. Results indicate that all sites yielded branched tetraether membrane lipids with the exception of Rondeberg, where GDGTs were below detection as a result of poor preservation conditions. Palynological investigation confirmed proxy derived temperatures. Furthermore palynomorph analyses supplemented earlier studies of the Noordhoek site and were piloted for the Rondeberg site, reaffirming alternating sequences of tropical and subtropical palynofloras. The MAATs, likewise, show variability and pronounced trends through time at the Langebaanweg and Noordhoek sites, generally corresponding with the variation and diversity of the pollen population. The terrestrial MAAT results appear to compliment Southern Hemisphere sea level changes associated with Antarctic glaciations. Additionally, this data shows a pattern similar to the Southern and Northern Hemisphere marine isotope records of relative fluctuations in the global climate and sea level change from the early to middle Miocene. The application of these past climate change indicators have been proved to be useful in the reconstruction of South Africa Miocene palaeoclimates, and may aid in understanding the consequences of climate change in the Cape region.
- Full Text:
- Date Issued: 2011
Male and female cardiovascular risk in an urban, black working population
- Authors: Jackson, Lindsay May
- Date: 2011
- Subjects: Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5127 , http://hdl.handle.net/10962/d1005205 , Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Description: The aim of this research project was to assess and compare cardiovascular disease (CVD) risk in black males and females from an urban, working population in the Makana (Grahamstown) region of the Eastern Cape, South Africa. Two-hundred and ninety one individuals (males: n = 143, females: n = 148) with a mean age of 42.6 (±8.1) years were voluntarily recruited from the greater urban Makana (Grahamstown) area. Eight Cardiovascular disease (CVD) risks were assessed: stature and mass were obtained in order to calculate body mass index (BMI) (mass/stature2). Obesity, defined as a morphological risk, was classified according to the World Health Organisation (WHO) BMI criteria (BMI>30kg.m-2), as well as according to measures of waist circumference (WC) and body composition. Hypertension, hypercholesterolemia and type II diabetes, were grouped as cardiovascular (CV) risks. Hypertension was defined as a blood pressure greater than 140/90mmHg (JNC-7); hypercholesterolemia, as total cholesterol greater than 6.2mmol.L-1 (NCEP); and type II diabetes, as total glucose greater than 12mmol.L-1 (WHO). Physical activity, diet, tobacco use, and alcohol consumption and dependence were grouped as lifestyle-related risks. These were assessed by means of self-reporting through the use of various validated questionnaires. Finally, self-reporting of obesity, hypertension, hypercholesterolemia and type II diabetes was assessed, in addition to perception questions on individuals’ perceived body shape and size (Ziebland figures). Self-reported and perceived responses were then compared to actual measures. Females were significantly (p<0.001) heavier than the males (92.7kg compared to 72.1kg) and had significantly (p<0.001) higher BMIs than their male counterparts (37.6kg.m-2 compared to 25.7 kg.-2). They also recorded significantly (p<0.001) higher waist circumference (WC) values and had significantly (p<0.001) higher percentage and total body fat. Significantly (p<0.001) more females were obese (81%) compared to males (17%). While a higher percentage of males (25 % compared to 22%) presented with stage I hypertension (≥140/90mmHg, <160/95mmHg), significantly (p<0.05) more females (14% compared to 8%) presented with stage II hypertension (>160/95mmHg). The prevalence of hypercholesterolemia at a high level of risk (>6.2mmol.L-1) was relatively low (2.1 % of males, 3.4% of females), but notably more participants (22% of males and 26% of females) presented with the condition at a moderate level of risk (>5mmol.L-1). Type II diabetes was the least prevalent CV risk factor, with no males and only 3% of females presenting with the condition. Males consumed significantly (p<0.05) more in terms of total energy intake (9024 vs. 7234 kJ) and were significantly (p<0.05) more active (3315 compared to 2660 MET-mins.week). A significantly (p<0.05) higher percentage of males smoked (51.1% compared to 3.4%), consumed alcohol (73.4% compared to 46.6%) and were alcohol dependent (40% compared to 33.5%). Both males and females tended to be ignorant of their health status, with both samples under-reporting obesity, hypertension and hypercholesterolemia, while over-reporting type II diabetes. Furthermore, obesity was significantly (p<0.05) underestimated, with both male and female individuals perceiving themselves to be notably smaller than they actually were. Physical activity and diet were important determinants of CVD risk in this black urban sample of individuals. Obesity, in particular central adiposity, was the most notable risk (particularly in females), followed by hypertension (particularly in males). Although some risks presented at a moderate level of risk, a clustering of risk factors was evident in both samples, with 12.6% and 41.2% of males and females presenting with two risk factors, and 2.8% and 8.1% of males and females respectively presenting with three risks.
- Full Text:
- Date Issued: 2011
- Authors: Jackson, Lindsay May
- Date: 2011
- Subjects: Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5127 , http://hdl.handle.net/10962/d1005205 , Cardiovascular system -- Diseases -- South Africa -- Grahamstown , Obesity -- South Africa -- Grahamstown , Hypertension -- South Africa -- Grahamstown , Hypercholesteremia -- South Africa -- Grahamstown , Diabetes -- South Africa -- Grahamstown , Lifestyles -- Health aspects -- South Africa -- Grahamstown , Health behavior -- South Africa -- Grahamstown , Health attitudes -- South Africa -- Grahamstown , Black people -- South Africa -- Grahamstown -- Health and hygiene
- Description: The aim of this research project was to assess and compare cardiovascular disease (CVD) risk in black males and females from an urban, working population in the Makana (Grahamstown) region of the Eastern Cape, South Africa. Two-hundred and ninety one individuals (males: n = 143, females: n = 148) with a mean age of 42.6 (±8.1) years were voluntarily recruited from the greater urban Makana (Grahamstown) area. Eight Cardiovascular disease (CVD) risks were assessed: stature and mass were obtained in order to calculate body mass index (BMI) (mass/stature2). Obesity, defined as a morphological risk, was classified according to the World Health Organisation (WHO) BMI criteria (BMI>30kg.m-2), as well as according to measures of waist circumference (WC) and body composition. Hypertension, hypercholesterolemia and type II diabetes, were grouped as cardiovascular (CV) risks. Hypertension was defined as a blood pressure greater than 140/90mmHg (JNC-7); hypercholesterolemia, as total cholesterol greater than 6.2mmol.L-1 (NCEP); and type II diabetes, as total glucose greater than 12mmol.L-1 (WHO). Physical activity, diet, tobacco use, and alcohol consumption and dependence were grouped as lifestyle-related risks. These were assessed by means of self-reporting through the use of various validated questionnaires. Finally, self-reporting of obesity, hypertension, hypercholesterolemia and type II diabetes was assessed, in addition to perception questions on individuals’ perceived body shape and size (Ziebland figures). Self-reported and perceived responses were then compared to actual measures. Females were significantly (p<0.001) heavier than the males (92.7kg compared to 72.1kg) and had significantly (p<0.001) higher BMIs than their male counterparts (37.6kg.m-2 compared to 25.7 kg.-2). They also recorded significantly (p<0.001) higher waist circumference (WC) values and had significantly (p<0.001) higher percentage and total body fat. Significantly (p<0.001) more females were obese (81%) compared to males (17%). While a higher percentage of males (25 % compared to 22%) presented with stage I hypertension (≥140/90mmHg, <160/95mmHg), significantly (p<0.05) more females (14% compared to 8%) presented with stage II hypertension (>160/95mmHg). The prevalence of hypercholesterolemia at a high level of risk (>6.2mmol.L-1) was relatively low (2.1 % of males, 3.4% of females), but notably more participants (22% of males and 26% of females) presented with the condition at a moderate level of risk (>5mmol.L-1). Type II diabetes was the least prevalent CV risk factor, with no males and only 3% of females presenting with the condition. Males consumed significantly (p<0.05) more in terms of total energy intake (9024 vs. 7234 kJ) and were significantly (p<0.05) more active (3315 compared to 2660 MET-mins.week). A significantly (p<0.05) higher percentage of males smoked (51.1% compared to 3.4%), consumed alcohol (73.4% compared to 46.6%) and were alcohol dependent (40% compared to 33.5%). Both males and females tended to be ignorant of their health status, with both samples under-reporting obesity, hypertension and hypercholesterolemia, while over-reporting type II diabetes. Furthermore, obesity was significantly (p<0.05) underestimated, with both male and female individuals perceiving themselves to be notably smaller than they actually were. Physical activity and diet were important determinants of CVD risk in this black urban sample of individuals. Obesity, in particular central adiposity, was the most notable risk (particularly in females), followed by hypertension (particularly in males). Although some risks presented at a moderate level of risk, a clustering of risk factors was evident in both samples, with 12.6% and 41.2% of males and females presenting with two risk factors, and 2.8% and 8.1% of males and females respectively presenting with three risks.
- Full Text:
- Date Issued: 2011
Isolation, purification and characterization of a 'factor' from Fusarium oxysporum responsible for platinum nanoparticle formation
- Authors: Govender, Yageshni
- Date: 2008
- Subjects: Nanoparticles , Platinum , Fusarium oxysporum , Fungi , Hydragenase
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3923 , http://hdl.handle.net/10962/d1003982 , Nanoparticles , Platinum , Fusarium oxysporum , Fungi , Hydragenase
- Description: Nanoparticles are microscopic particles in the nanometre range of between 1-100 nm. A wide variety of metal nanoparticles have been found to be produced by prokaryotic and eukaryotic organisms including several fungal species, when exposed to solutions containing metal salts. Previous studies have suggested that this bioreduction of metal particles may occur via an active reductase/hydrogenase enzyme process where H2 is the electron donor and positively charged platinum species act as the electron acceptors becoming reduced to a neutral metal nanoparticle. In view of this on going research, the current study investigated the “factors” in the fungus Fusarium oxysporum which were responsible for platinum nanoparticle formation. The fungus F.oxysporum was used in this study as it has been previously shown to produce a variety of nanoparticles including gold and silver. During exposure of the biomass to H2PtCl6 the initial response to the platinum salts was metal internalisation and subsequent reduction of H2PtCI6 to produce platinum nanoparticles. The observed localization and distribution of platinum precipitates provided some evidence for a hydrogenase mediated bioreduction of platinum salts to produce nanoparticles. Factors secreted by the fungus into the extracellular fluids, were shown to be responsible for platinum nanoparticle formation. From the identification, purification and characterisation studies it was concluded that a hydrogenase and other “factors” were responsible for platinum nanoparticle formation in F.oxysporum. Purification of the hydrogenase by freeze-drying and Sephacryl S200 size exclusion- ion exchange chromatography revealed the enzyme to be a dimer with a 29.4 and 44.5 kDa when analysed by a 10 % SDS-PAGE. Characterisation of the enzyme revealed optimal activity at a pH of 7.5 and temperature of 38 °C while it exhibited a poor thermal stability with a half life of 36 minutes. The kinetic parameters Vmax and Km were 3.16 U ml-1 and 3.64 mM respectively. The purified hydrogenase was used in subsequent experiments for the reduction of platinum salts, H2PtCl6 and PtCl2. the results indicated an over 90 % reduction of the platinum salts and TEM micrographs indicated the production of platinum nanoparticles under the various experimental conditions.
- Full Text:
- Date Issued: 2008
- Authors: Govender, Yageshni
- Date: 2008
- Subjects: Nanoparticles , Platinum , Fusarium oxysporum , Fungi , Hydragenase
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3923 , http://hdl.handle.net/10962/d1003982 , Nanoparticles , Platinum , Fusarium oxysporum , Fungi , Hydragenase
- Description: Nanoparticles are microscopic particles in the nanometre range of between 1-100 nm. A wide variety of metal nanoparticles have been found to be produced by prokaryotic and eukaryotic organisms including several fungal species, when exposed to solutions containing metal salts. Previous studies have suggested that this bioreduction of metal particles may occur via an active reductase/hydrogenase enzyme process where H2 is the electron donor and positively charged platinum species act as the electron acceptors becoming reduced to a neutral metal nanoparticle. In view of this on going research, the current study investigated the “factors” in the fungus Fusarium oxysporum which were responsible for platinum nanoparticle formation. The fungus F.oxysporum was used in this study as it has been previously shown to produce a variety of nanoparticles including gold and silver. During exposure of the biomass to H2PtCl6 the initial response to the platinum salts was metal internalisation and subsequent reduction of H2PtCI6 to produce platinum nanoparticles. The observed localization and distribution of platinum precipitates provided some evidence for a hydrogenase mediated bioreduction of platinum salts to produce nanoparticles. Factors secreted by the fungus into the extracellular fluids, were shown to be responsible for platinum nanoparticle formation. From the identification, purification and characterisation studies it was concluded that a hydrogenase and other “factors” were responsible for platinum nanoparticle formation in F.oxysporum. Purification of the hydrogenase by freeze-drying and Sephacryl S200 size exclusion- ion exchange chromatography revealed the enzyme to be a dimer with a 29.4 and 44.5 kDa when analysed by a 10 % SDS-PAGE. Characterisation of the enzyme revealed optimal activity at a pH of 7.5 and temperature of 38 °C while it exhibited a poor thermal stability with a half life of 36 minutes. The kinetic parameters Vmax and Km were 3.16 U ml-1 and 3.64 mM respectively. The purified hydrogenase was used in subsequent experiments for the reduction of platinum salts, H2PtCl6 and PtCl2. the results indicated an over 90 % reduction of the platinum salts and TEM micrographs indicated the production of platinum nanoparticles under the various experimental conditions.
- Full Text:
- Date Issued: 2008
Using computer vision to categorize tyres and estimate the number of visible tyres in tyre stockpile images
- Authors: Eastwood, Grant
- Date: 2017
- Subjects: Tires -- Specifications Tires -- Recycling , Tires -- Maintenance and repair
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/16022 , vital:28313
- Description: Pressures from environmental agencies contribute to the challenges associated with the disposal of waste tyres, particularly in South Africa. Recycling of waste tyres in South Africa is in its infancy resulting in the historically undocumented and uncontrolled existence of waste tyre stockpiles across the country. The remote and distant locations of such stockpiles typically complicate the logistics associated with the collection, transport and storage of waste tyres prior to entering the recycling process. In order to optimize the logistics associated with the collection of waste tyres from stockpiles, useful information about such stockpiles would include estimates of the types of tyres as well as the quantity of specific tyre types found in particular stockpiles. This research proposes the use of computer vision for categorizing individual tyres and estimating the number of visible tyres in tyre stockpile images to support the logistics in tyre recycling efforts. The study begins with a broad review of image processing and computer vision algorithms for categorization and counting objects in images. The bag of visual words (BoVW) model for categorization is tested on two small data sets of tread tyre images using a random sub-sampling holdout method. The categorization results are evaluated using performance metrics for multiclass classifiers, namely the average accuracy, precision, and recall. The results indicated that corner-based local feature detectors combined with speeded up robust features (SURF) descriptors in a BoVW model provide moderately accurate categorization of tyres based on tread images. Two feature extraction methods for extracting features for use in training neural networks (NNs) for tyre count estimations in tyre stockpiles are proposed. The two feature extraction methods are used to describe images in terms of feature vectors that can be used as input for NNs. The first feature extraction method uses the BoVW model with histograms of oriented gradients (HOG) features collected from overlapping sub-images to create a visual vocabulary and describe the images in terms of their visual word occurrence histogram. The second feature extraction method uses the image gradient magnitude, gradient orientation, and edge orientations of edges detected using the Canny edge detector. A concatenated histogram is constructed from individual histograms of gradient orientations and gradient magnitude. The histograms are then used to train NNs using backpropogation to approximate functions from the feature vectors describing the images to scalar count estimations. The accuracy of visible object count predictions are evaluated using NN evaluation techniques to determine the accuracy of predictions and the generalization ability of the fit model. The count estimation experiments using the two feature extraction methods for input to NNs showed that fairly accurate count estimations can be obtained and that the fit model could generalize fairly well to unseen images.
- Full Text:
- Date Issued: 2017
- Authors: Eastwood, Grant
- Date: 2017
- Subjects: Tires -- Specifications Tires -- Recycling , Tires -- Maintenance and repair
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/16022 , vital:28313
- Description: Pressures from environmental agencies contribute to the challenges associated with the disposal of waste tyres, particularly in South Africa. Recycling of waste tyres in South Africa is in its infancy resulting in the historically undocumented and uncontrolled existence of waste tyre stockpiles across the country. The remote and distant locations of such stockpiles typically complicate the logistics associated with the collection, transport and storage of waste tyres prior to entering the recycling process. In order to optimize the logistics associated with the collection of waste tyres from stockpiles, useful information about such stockpiles would include estimates of the types of tyres as well as the quantity of specific tyre types found in particular stockpiles. This research proposes the use of computer vision for categorizing individual tyres and estimating the number of visible tyres in tyre stockpile images to support the logistics in tyre recycling efforts. The study begins with a broad review of image processing and computer vision algorithms for categorization and counting objects in images. The bag of visual words (BoVW) model for categorization is tested on two small data sets of tread tyre images using a random sub-sampling holdout method. The categorization results are evaluated using performance metrics for multiclass classifiers, namely the average accuracy, precision, and recall. The results indicated that corner-based local feature detectors combined with speeded up robust features (SURF) descriptors in a BoVW model provide moderately accurate categorization of tyres based on tread images. Two feature extraction methods for extracting features for use in training neural networks (NNs) for tyre count estimations in tyre stockpiles are proposed. The two feature extraction methods are used to describe images in terms of feature vectors that can be used as input for NNs. The first feature extraction method uses the BoVW model with histograms of oriented gradients (HOG) features collected from overlapping sub-images to create a visual vocabulary and describe the images in terms of their visual word occurrence histogram. The second feature extraction method uses the image gradient magnitude, gradient orientation, and edge orientations of edges detected using the Canny edge detector. A concatenated histogram is constructed from individual histograms of gradient orientations and gradient magnitude. The histograms are then used to train NNs using backpropogation to approximate functions from the feature vectors describing the images to scalar count estimations. The accuracy of visible object count predictions are evaluated using NN evaluation techniques to determine the accuracy of predictions and the generalization ability of the fit model. The count estimation experiments using the two feature extraction methods for input to NNs showed that fairly accurate count estimations can be obtained and that the fit model could generalize fairly well to unseen images.
- Full Text:
- Date Issued: 2017
Quality in low - cost houses in Nelson Mandela Bay
- Authors: Gogela, Nwabisa
- Date: 2019
- Subjects: Housing development -- South Africa -- Nelson Mandela Bay Municipality , Housing -- South Africa -- Nelson Mandela Bay Municipality Dwellings -- Defects -- South Africa -- Nelson Mandela Bay Municipality Construction industry -- South Africa -- Nelson Mandela Bay Municipality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39709 , vital:35350
- Description: Numerous low cost houses in the Nelson Mandela Bay Municipality, and all over South Africa for that matter, have been handed back to the provincial governments by beneficiaries for remedial work in a government programme called Rectification. Several houses have required demolition and be rebuilt because of patent and latent defects. Government spends huge sums of money in rectifying and fixing the defects on houses that should have been built appropriately from the start; this leads to fruitless and ineffective expenditure. The Department of Human Settlements cannot be solely blamed for the poor quality housing delivery. The contractors, project managers and the inspectors from different stakeholders involved in a project also play a massive role in certifying that the houses delivered are of required norms and standards to assist in minimizing poor quality in the delivery of the low cost housing. The funding spent in rectifying low-cost housing has caused huge backlogs, triggering protests within the communities and, regrettably, incomplete projects around the Nelson Mandela Bay Municipality, contributing to urban decay. The aim of this study was to investigate the poor and unacceptable quality in the delivery of low-cost subsidized houses in the Nelson Mandela Metro Region. The focus of the study was to scrutinize the loopholes and the ambiguities that might exist throughout the life cycle of a low cost housing project, and suggestions to mitigate common problems emerging in various projects. A qualitative research approach was followed in this study. The sample was purposively selected and comprised of 15 beneficiaries residing in the three selected NMBM (housing projects), the Ward Councilors (3), Contractors (3), the Quality Assurance Project Managers managing and foreseeing these projects(3), Quality Coordinators(3) and Inspectors from each organization, (NHBRC, ECDHS and HDA), making three (3) in total.. The study revealed that skills shortage, insufficient workforce training and lack of strict quality control are some of the factors affecting quality. Compliancy to norms and standards is not fully emphasized to the relevant stakeholders during the initiation and the commencement of the project. Tools to measure the effectiveness of quality assurance practices are currently used, but it can be argued that they are not effective enough. The study has offered a set of recommendations to address the key findings.
- Full Text:
- Date Issued: 2019
- Authors: Gogela, Nwabisa
- Date: 2019
- Subjects: Housing development -- South Africa -- Nelson Mandela Bay Municipality , Housing -- South Africa -- Nelson Mandela Bay Municipality Dwellings -- Defects -- South Africa -- Nelson Mandela Bay Municipality Construction industry -- South Africa -- Nelson Mandela Bay Municipality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39709 , vital:35350
- Description: Numerous low cost houses in the Nelson Mandela Bay Municipality, and all over South Africa for that matter, have been handed back to the provincial governments by beneficiaries for remedial work in a government programme called Rectification. Several houses have required demolition and be rebuilt because of patent and latent defects. Government spends huge sums of money in rectifying and fixing the defects on houses that should have been built appropriately from the start; this leads to fruitless and ineffective expenditure. The Department of Human Settlements cannot be solely blamed for the poor quality housing delivery. The contractors, project managers and the inspectors from different stakeholders involved in a project also play a massive role in certifying that the houses delivered are of required norms and standards to assist in minimizing poor quality in the delivery of the low cost housing. The funding spent in rectifying low-cost housing has caused huge backlogs, triggering protests within the communities and, regrettably, incomplete projects around the Nelson Mandela Bay Municipality, contributing to urban decay. The aim of this study was to investigate the poor and unacceptable quality in the delivery of low-cost subsidized houses in the Nelson Mandela Metro Region. The focus of the study was to scrutinize the loopholes and the ambiguities that might exist throughout the life cycle of a low cost housing project, and suggestions to mitigate common problems emerging in various projects. A qualitative research approach was followed in this study. The sample was purposively selected and comprised of 15 beneficiaries residing in the three selected NMBM (housing projects), the Ward Councilors (3), Contractors (3), the Quality Assurance Project Managers managing and foreseeing these projects(3), Quality Coordinators(3) and Inspectors from each organization, (NHBRC, ECDHS and HDA), making three (3) in total.. The study revealed that skills shortage, insufficient workforce training and lack of strict quality control are some of the factors affecting quality. Compliancy to norms and standards is not fully emphasized to the relevant stakeholders during the initiation and the commencement of the project. Tools to measure the effectiveness of quality assurance practices are currently used, but it can be argued that they are not effective enough. The study has offered a set of recommendations to address the key findings.
- Full Text:
- Date Issued: 2019
The remote sensing of fires and their effects on soil properties in the uKhahlamba Drakensberg Park
- Authors: Moore, Natasha Jade
- Date: 2019
- Subjects: Remote sensing -- South Africa -- KwaZulu-Natal , Soil ecology -- South Africa -- KwaZulu-Natal , Grassland fires -- South Africa -- KwaZulu-Natal , Grassland fires -- Remote sensing -- South Africa -- KwaZulu-Natal , Soils -- Effect of fires on -- South Africa -- KwaZulu-Natal , uKhalamba Drakensberg Park (South Africa)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/94400 , vital:31042
- Description: Fires are a common and natural occurrence globally and specifically on the African continent. The Drakensberg Mountains are home to southern Africa’s high-altitude fire-climax grasslands, where fire is the dominant management tool. Fire is used to maintain the grasslands in the uKhahlamba Drakensberg Park (UDP) World Heritage Site, located on the eastern escarpment of the KwaZulu-Natal Drakensberg. This study aimed to investigate the spatial and temporal frequency of fires using remote sensing, and to investigate the effect of fire frequency on soil properties in the UDP. Remote sensing offers a set of supportive tools for the management of this sensitive vegetation and specifically to assess the frequency and spatial extent of fires. Field assessments can then be used to assess the impact of fires. Remotely sensed data were used to determine fire frequency and the spatial extent of fires in the UDP. The Moderate Resolution Imaging Spectroradiometer (MODIS) and Visible Infrared Imaging Radiometer Suite (VIIRS) active fire detection point data were processed to investigate the temporal resolution of fires. Landsat 5 and 8 imagery were utilised for conducting Normalised Burn Ratios (NBR) to determine the spatial extent of the burn scars of fires. The results from the remotely sensed data were used to select study sites for accessing the effects of fire frequency on soil properties. The remote sensing results showed the main fire season in the UDP was from May to October, and annual burn scars from the available Landsat data for 1998 to 2017 ranged from 22.5% to 57.67% of the UDP. Remote sensing was shown to be an effective tool for monitoring fires in the UDP, with a combination of satellite data producing the best results. Soil properties were highly varied across the UDP. Environmental factors were shown to have a more significant influence on soil properties than fire frequency. This study highlighted the complex nature and diversity of fires and soils across the UDP.
- Full Text:
- Date Issued: 2019
- Authors: Moore, Natasha Jade
- Date: 2019
- Subjects: Remote sensing -- South Africa -- KwaZulu-Natal , Soil ecology -- South Africa -- KwaZulu-Natal , Grassland fires -- South Africa -- KwaZulu-Natal , Grassland fires -- Remote sensing -- South Africa -- KwaZulu-Natal , Soils -- Effect of fires on -- South Africa -- KwaZulu-Natal , uKhalamba Drakensberg Park (South Africa)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/94400 , vital:31042
- Description: Fires are a common and natural occurrence globally and specifically on the African continent. The Drakensberg Mountains are home to southern Africa’s high-altitude fire-climax grasslands, where fire is the dominant management tool. Fire is used to maintain the grasslands in the uKhahlamba Drakensberg Park (UDP) World Heritage Site, located on the eastern escarpment of the KwaZulu-Natal Drakensberg. This study aimed to investigate the spatial and temporal frequency of fires using remote sensing, and to investigate the effect of fire frequency on soil properties in the UDP. Remote sensing offers a set of supportive tools for the management of this sensitive vegetation and specifically to assess the frequency and spatial extent of fires. Field assessments can then be used to assess the impact of fires. Remotely sensed data were used to determine fire frequency and the spatial extent of fires in the UDP. The Moderate Resolution Imaging Spectroradiometer (MODIS) and Visible Infrared Imaging Radiometer Suite (VIIRS) active fire detection point data were processed to investigate the temporal resolution of fires. Landsat 5 and 8 imagery were utilised for conducting Normalised Burn Ratios (NBR) to determine the spatial extent of the burn scars of fires. The results from the remotely sensed data were used to select study sites for accessing the effects of fire frequency on soil properties. The remote sensing results showed the main fire season in the UDP was from May to October, and annual burn scars from the available Landsat data for 1998 to 2017 ranged from 22.5% to 57.67% of the UDP. Remote sensing was shown to be an effective tool for monitoring fires in the UDP, with a combination of satellite data producing the best results. Soil properties were highly varied across the UDP. Environmental factors were shown to have a more significant influence on soil properties than fire frequency. This study highlighted the complex nature and diversity of fires and soils across the UDP.
- Full Text:
- Date Issued: 2019
Procurement challenges faced by Eskom contractors during the tender stage
- Authors: Hlalutye, Thandiwe
- Date: 2018
- Subjects: Management -- Procurement -- South Africa -- Northern Cape , Project management -- South Africa -- Northern Cape Contractors' operation -- South Africa -- Northern Cape -- Finance
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30260 , vital:30913
- Description: The procurement process within South Africa has become an increasing focus in open market access for local economic development. The government introduced Preferential Procurement Policy Frame Act 5 of 2000 (PPPFA) which must be followed by all government owned organisations, including parastatals. Eskom, therefore, has to abide to this regulation and, since it started utilising the Act in its tendering process, there has been a challenge to getting contractors who are commercially and technically approved to be able to execute work or projects. The aim of this study is to examine challenges faced by Eskom Northern Cape Operating Unit contractors during the tender stage in terms of tender requirements, whereby they fail to submit all required tender returnables and fail to meet a set threshold in order to be successful and being awarded with the contract. This study undertook an empirical study using a case study of Eskom after a literature review. A questionnaire was used to collect data from all the active contractors on the Eskom Northern Cape Operating Unit data base. The key findings included that; contractors agreed that they still lack understanding of a quality management system. However they disagreed that they are not complying with safety health and environment and that they lack knowledge of technical requirements which leads them to not submitting objective evidence. The study concluded that contracting firms still do not comply with procurement requirements during the tender stage.
- Full Text:
- Date Issued: 2018
- Authors: Hlalutye, Thandiwe
- Date: 2018
- Subjects: Management -- Procurement -- South Africa -- Northern Cape , Project management -- South Africa -- Northern Cape Contractors' operation -- South Africa -- Northern Cape -- Finance
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/30260 , vital:30913
- Description: The procurement process within South Africa has become an increasing focus in open market access for local economic development. The government introduced Preferential Procurement Policy Frame Act 5 of 2000 (PPPFA) which must be followed by all government owned organisations, including parastatals. Eskom, therefore, has to abide to this regulation and, since it started utilising the Act in its tendering process, there has been a challenge to getting contractors who are commercially and technically approved to be able to execute work or projects. The aim of this study is to examine challenges faced by Eskom Northern Cape Operating Unit contractors during the tender stage in terms of tender requirements, whereby they fail to submit all required tender returnables and fail to meet a set threshold in order to be successful and being awarded with the contract. This study undertook an empirical study using a case study of Eskom after a literature review. A questionnaire was used to collect data from all the active contractors on the Eskom Northern Cape Operating Unit data base. The key findings included that; contractors agreed that they still lack understanding of a quality management system. However they disagreed that they are not complying with safety health and environment and that they lack knowledge of technical requirements which leads them to not submitting objective evidence. The study concluded that contracting firms still do not comply with procurement requirements during the tender stage.
- Full Text:
- Date Issued: 2018
Babesia canis : a characterization of five field stocks in Southern Africa
- Authors: Van Heerden, Garth William
- Date: 1994
- Subjects: Babesia canis -- Africa, Southern , Tick-borne diseases -- Africa, Southern , Dogs -- Parasites
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5645 , http://hdl.handle.net/10962/d1005327 , Babesia canis -- Africa, Southern , Tick-borne diseases -- Africa, Southern , Dogs -- Parasites
- Description: This study attempted to characterise 5 field stocks of B. canis, collected from various geographic areas of southern Africa in terms of pathogenicity, immune response, cross resistance and antigenic composition. This was done by means of artificial infection of two to four year old Beagle dogs. Serological tests included indirect fluorescent antibody tests, polyacrylamide gel electrophoresis , Western blotting of B. canis antigen and immune serum transfers. The ZIM1, GHT1 , QTN1 and DBN1 stocks were found to be virulent and the JHB1 stock, which might be a cardiac form of babesiosis, was found to be highly virulent. Immune responses of dogs to primary challenges were poor. A second challenge or relapse was important in the development of a resistant immunity. Heterologous challenges showed that dogs which were immune to the ZIM1, QTN1 and DBN1 stocks were partially immune to the JHB1 stock. The dog that was immune to the GHT1 stock was the only one that was totally resistant to the JHB1 stock. Western blots revealed interstock antigenic variation between the JHB1 and the other four stocks. These differences were, however, not great enough to separate the stocks taxonomically.
- Full Text:
- Date Issued: 1994
- Authors: Van Heerden, Garth William
- Date: 1994
- Subjects: Babesia canis -- Africa, Southern , Tick-borne diseases -- Africa, Southern , Dogs -- Parasites
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5645 , http://hdl.handle.net/10962/d1005327 , Babesia canis -- Africa, Southern , Tick-borne diseases -- Africa, Southern , Dogs -- Parasites
- Description: This study attempted to characterise 5 field stocks of B. canis, collected from various geographic areas of southern Africa in terms of pathogenicity, immune response, cross resistance and antigenic composition. This was done by means of artificial infection of two to four year old Beagle dogs. Serological tests included indirect fluorescent antibody tests, polyacrylamide gel electrophoresis , Western blotting of B. canis antigen and immune serum transfers. The ZIM1, GHT1 , QTN1 and DBN1 stocks were found to be virulent and the JHB1 stock, which might be a cardiac form of babesiosis, was found to be highly virulent. Immune responses of dogs to primary challenges were poor. A second challenge or relapse was important in the development of a resistant immunity. Heterologous challenges showed that dogs which were immune to the ZIM1, QTN1 and DBN1 stocks were partially immune to the JHB1 stock. The dog that was immune to the GHT1 stock was the only one that was totally resistant to the JHB1 stock. Western blots revealed interstock antigenic variation between the JHB1 and the other four stocks. These differences were, however, not great enough to separate the stocks taxonomically.
- Full Text:
- Date Issued: 1994
Investigating the role of Hsp90 and LRP1 in FN matrix dynamics
- Authors: Boël, Natasha Marie-Eraine
- Date: 2016
- Subjects: Extracellular matrix , Molecular chaperones , Heat shock proteins , Cancer , Fibronectins
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2713 , vital:20319
- Description: Fibronectin (FN), a matrix protein responsible for regulating processes including migration and differentiation, is secreted as a soluble dimer which is assembled into an insoluble extracellular matrix. The dynamics of FN matrix assembly and degradation play a large role in cell migration and invasion contributing to the metastatic potential of cancer cells. Previous studies from our group have shown the direct binding of Hsp90 and FN in vitro and that inhibition of Hsp90 with novobiocin (NOV) caused internalisation of the FN matrix. However, the receptor mediating this internalisation is currently unknown. Low density lipoprotein 1 (LRP1) is a likely candidate as it is a ubiquitous receptor responsible for regulating internalisation of diverse ligands and is known to bind both Hsp90 and FN. We used wild type and knockout LRP1 cell lines to study the endocytosis of FN via this receptor. Here, we demonstrate that LRP1-deficient cells accumulated greatly increased levels of FN and were found to be less sensitive to pharmacological inhibition of Hsp90 by NOV. LRP1-expressing MEF-1 and Hs578T breast cancer cells experienced an increase in total FN in response to NOV, at concentrations below the EC50 value, followed by a dose-dependent loss of FN. We attributed greater FN levels to a loss of extracellular FN matrix coupled with increased internalisation of FN. Cell-surface biotinylation and DOC assays showed that loss of extracellular FN was specific to LRP1-expressing MEF-1 cells. Furthermore, we demonstrate that the loss of extracellular FN is not affected by changes in FN mRNA levels as determined by qRT-PCR, and that treatment with NOV resulted in the accelerated degradation of FN in the presence of cycloheximide. Immunoprecipitation studies reveal a putative complex exists between FN, Hsp90 and LRP1 in both cancer and non-cancer cells which is not perturbed by NOV. Western analyses revealed increased proteolytic processing of LRP1 in response to NOV which we proposed, based on literature, to modulate signalling pathways as a potential mechanism for regulating FN turnover. Moreover, using wound healing assays we identified increased migration to be one of the consequences associated with loss of extracellular FN by Hsp90 inhibition but only in cells containing LRP1. In summary, this study provides new insights into the Hsp90-LRP1 mediated loss of FN matrix and also reveals for the first time the functional consequence related to FN turnover by NOV was an increase in migration in LRP1-expressing cells.
- Full Text:
- Date Issued: 2016
- Authors: Boël, Natasha Marie-Eraine
- Date: 2016
- Subjects: Extracellular matrix , Molecular chaperones , Heat shock proteins , Cancer , Fibronectins
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2713 , vital:20319
- Description: Fibronectin (FN), a matrix protein responsible for regulating processes including migration and differentiation, is secreted as a soluble dimer which is assembled into an insoluble extracellular matrix. The dynamics of FN matrix assembly and degradation play a large role in cell migration and invasion contributing to the metastatic potential of cancer cells. Previous studies from our group have shown the direct binding of Hsp90 and FN in vitro and that inhibition of Hsp90 with novobiocin (NOV) caused internalisation of the FN matrix. However, the receptor mediating this internalisation is currently unknown. Low density lipoprotein 1 (LRP1) is a likely candidate as it is a ubiquitous receptor responsible for regulating internalisation of diverse ligands and is known to bind both Hsp90 and FN. We used wild type and knockout LRP1 cell lines to study the endocytosis of FN via this receptor. Here, we demonstrate that LRP1-deficient cells accumulated greatly increased levels of FN and were found to be less sensitive to pharmacological inhibition of Hsp90 by NOV. LRP1-expressing MEF-1 and Hs578T breast cancer cells experienced an increase in total FN in response to NOV, at concentrations below the EC50 value, followed by a dose-dependent loss of FN. We attributed greater FN levels to a loss of extracellular FN matrix coupled with increased internalisation of FN. Cell-surface biotinylation and DOC assays showed that loss of extracellular FN was specific to LRP1-expressing MEF-1 cells. Furthermore, we demonstrate that the loss of extracellular FN is not affected by changes in FN mRNA levels as determined by qRT-PCR, and that treatment with NOV resulted in the accelerated degradation of FN in the presence of cycloheximide. Immunoprecipitation studies reveal a putative complex exists between FN, Hsp90 and LRP1 in both cancer and non-cancer cells which is not perturbed by NOV. Western analyses revealed increased proteolytic processing of LRP1 in response to NOV which we proposed, based on literature, to modulate signalling pathways as a potential mechanism for regulating FN turnover. Moreover, using wound healing assays we identified increased migration to be one of the consequences associated with loss of extracellular FN by Hsp90 inhibition but only in cells containing LRP1. In summary, this study provides new insights into the Hsp90-LRP1 mediated loss of FN matrix and also reveals for the first time the functional consequence related to FN turnover by NOV was an increase in migration in LRP1-expressing cells.
- Full Text:
- Date Issued: 2016