Elucidating the Molecular Basis of the Interaction between the β2-integrin, αXβ2, and the low-affinity IgE Receptor, CD23
- Authors: Clarke, Stephen
- Date: 2019
- Subjects: CD23 antigen , Immune response Cellular immunity Molecular immunology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/37990 , vital:34277
- Description: The low affinity IgE receptor, CD23, is involved in a myriad of immune reactions. It is not only a receptor for IgE, but also functions in the regulation of IgE synthesis, isotype switching in B cells, and induction of the inflammatory response. These effector functions of CD23 arise through its interaction with another leukocyte-specific cell surface receptor – the β2 integrin subfamily. However, this interaction has not been fully described. It has been shown that CD23 is capable of interacting with the β3 and β5 integrin β-subunit of integrins via a basic RKC motif in a metal cation-independent fashion. The currently proposed mechanism for the interaction between CD23 and the integrin superfamily was applied to the β2 integrin subfamily. In this study the interaction was probed for whether or not the RKC motif governs the interaction as well. This was done by performing bioinformatics docking predictions between the CD23 and αXβ2 integrin proteins. This revealed that in the absence of cations, the RKC motif is involved in interaction with the integrin αI domain. However, since physiologically integrin activity has been shown to be regulated by metal cations, docking predictions were also performed in the presence of such cations. This showed the interaction to involve novel acidic motifs within the CD23 protein, GEF and LDL. This same pattern of interaction was seen in docking predictions between CD23 and the β2- and β3I-like domains. To further investigate, recombinant proteins of sCD23 and the αXI domain were produced using E. coli expression systems. The DNA sequence was mutated to produce mutant versions of the CD23 RKC and GEF motifs as well as a high-affinity locked αXI domain. These proteins were used in subsequent SPR spectroscopy analysis of the binding affinity between immobilised integrin and CD23 analyte. It was shown that the mutation within the RKC motif reduced the binding affinity under cation-independence, especially when the Arg172 residue was substituted. However binding was not completely lost. This result was supported by synthetic peptides containing the same RKC motif and substitutions. These showed complete loss in binding in the double RKΔAA substitution, suggesting the involvement of other residues in the RKC-dependent interaction. In contrast, under cation dependence, the RKC motif substitutions showed no effect on binding affinity, while the GEF motif substitution exhibited near complete loss in binding. This same effect on binding was validated by U937 cell-based ELISA using live cells. This showed decreased capture of differentiated U937 cells, expressing the αXβ2 integrin, by immobilised recombinant sCD23 protein. In this study it was noted that, 2 contrary to the SPR analysis, metal cations allowed for a higher titre of cells to be captured in comparison to the cation-free binding.
- Full Text:
- Date Issued: 2019
- Authors: Clarke, Stephen
- Date: 2019
- Subjects: CD23 antigen , Immune response Cellular immunity Molecular immunology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/37990 , vital:34277
- Description: The low affinity IgE receptor, CD23, is involved in a myriad of immune reactions. It is not only a receptor for IgE, but also functions in the regulation of IgE synthesis, isotype switching in B cells, and induction of the inflammatory response. These effector functions of CD23 arise through its interaction with another leukocyte-specific cell surface receptor – the β2 integrin subfamily. However, this interaction has not been fully described. It has been shown that CD23 is capable of interacting with the β3 and β5 integrin β-subunit of integrins via a basic RKC motif in a metal cation-independent fashion. The currently proposed mechanism for the interaction between CD23 and the integrin superfamily was applied to the β2 integrin subfamily. In this study the interaction was probed for whether or not the RKC motif governs the interaction as well. This was done by performing bioinformatics docking predictions between the CD23 and αXβ2 integrin proteins. This revealed that in the absence of cations, the RKC motif is involved in interaction with the integrin αI domain. However, since physiologically integrin activity has been shown to be regulated by metal cations, docking predictions were also performed in the presence of such cations. This showed the interaction to involve novel acidic motifs within the CD23 protein, GEF and LDL. This same pattern of interaction was seen in docking predictions between CD23 and the β2- and β3I-like domains. To further investigate, recombinant proteins of sCD23 and the αXI domain were produced using E. coli expression systems. The DNA sequence was mutated to produce mutant versions of the CD23 RKC and GEF motifs as well as a high-affinity locked αXI domain. These proteins were used in subsequent SPR spectroscopy analysis of the binding affinity between immobilised integrin and CD23 analyte. It was shown that the mutation within the RKC motif reduced the binding affinity under cation-independence, especially when the Arg172 residue was substituted. However binding was not completely lost. This result was supported by synthetic peptides containing the same RKC motif and substitutions. These showed complete loss in binding in the double RKΔAA substitution, suggesting the involvement of other residues in the RKC-dependent interaction. In contrast, under cation dependence, the RKC motif substitutions showed no effect on binding affinity, while the GEF motif substitution exhibited near complete loss in binding. This same effect on binding was validated by U937 cell-based ELISA using live cells. This showed decreased capture of differentiated U937 cells, expressing the αXβ2 integrin, by immobilised recombinant sCD23 protein. In this study it was noted that, 2 contrary to the SPR analysis, metal cations allowed for a higher titre of cells to be captured in comparison to the cation-free binding.
- Full Text:
- Date Issued: 2019
Metabolic effects brought about by tricyclic antidepressants and the contribution of a medicinal plant in alleviating high fat diet induced insulin resistance in male wistar rats
- Authors: Chadwick, Wayne
- Date: 2006
- Subjects: Rats -- Metabolism , Diabetes -- Research , Medicinal plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10329 , http://hdl.handle.net/10948/461 , Rats -- Metabolism , Diabetes -- Research , Medicinal plants -- South Africa
- Description: Type II diabetes is becoming a growing problem in developed countries worldwide. The median age for diagnosis was around sixty, but recent surveys have shown that the entire age distribution curve shifting left. The incidence of type II diabetes is thought to be parallel with the growing rate of obesity associated with an unhealthy western diet. Type II diabetes is an expensive disease to manage, it is for this reason that cheaper medication needs to be investigated in the form of traditional plants, such as Sutherlandia frutescens. Prescription medication, such as tricyclic antidepressants, may also increase body weight thereby playing a role in obesity. The cause of weight gain in such cases may go unrecognized or lead to cessation of the medication with or without the practitioner’s knowledge or approval. It is therefore necessary to investigate the causative agents responsible for the excessive weight gain. Drinking water containing extracts of S. frutescens or metformin was administered to two groups of eleven insulin resistant male Wistar rats. The insulin resistant control group received water without any medication. Rats were sacrificed after 8 weeks allowing for fasting blood glucose, insulin and tissue glycogen content determination. Glucose uptake was also determined using [3H] deoxyglucose. The effect of the medication and the diet on muscle post receptor insulin signaling proteins was determined through Western blots. Liver proteomics was also performed using 2-D electrophoresis. In a separate experiment 26 male Wistar rats were exposed to strepotozotocin toxin, 7 of these rats received intravenous insulin treatment, 7 rats received S. frutescens extract and 7 rats received a combination of both medications, the remaining 5 received no treatment and served as the control. Rats were sacrificed after 6 days allowing for fasting blood glucose, insulin and tissue glycogen content determination. Two groups of 14 male Wistar rats received amitriptyline or trimipramine (common tricyclic antidepressants) in their drinking water, the control group (30 rats) received water without any medication. The rats’ weight and food consumption was monitored throughout the trial and their oxygen consumption was also determined. Rats were sacrificed after 6 weeks or 14 weeks of medicinal compliance allowing for fasting blood glucose, insulin and tissue glycogen content determination. Glucose uptake was also determined using [3H] deoxyglucose. S. frutescens treatment normalized circulating serum insulin levels and significantly increased the rate of glucose clearance. Certain post receptor insulin signaling proteins were also significantly increased relative to the insulin resistant control group. 2-D electrophoresis identified the normalization of protein levels associated with the urea cycle. S. frutescens was also able to, independently; maintain normoglycaemic levels in the strepotozotocin treated group. The tricyclic antidepressants significantly increased blood glucose levels while significantly reducing tissue glycogen levels for both sacrifice periods. Serum insulin remained unchanged while a significant increase in insulin degradation and insulin degrading enzyme levels were found for both antidepressants. S. frutescens shows promise as a low cost antidiabetic medication for future use. Although the antidepressants did not promote weight gain, the increase in blood glucose levels may be cause for concern in patients with a pre-disposition toward developing diabetes.
- Full Text:
- Date Issued: 2006
- Authors: Chadwick, Wayne
- Date: 2006
- Subjects: Rats -- Metabolism , Diabetes -- Research , Medicinal plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10329 , http://hdl.handle.net/10948/461 , Rats -- Metabolism , Diabetes -- Research , Medicinal plants -- South Africa
- Description: Type II diabetes is becoming a growing problem in developed countries worldwide. The median age for diagnosis was around sixty, but recent surveys have shown that the entire age distribution curve shifting left. The incidence of type II diabetes is thought to be parallel with the growing rate of obesity associated with an unhealthy western diet. Type II diabetes is an expensive disease to manage, it is for this reason that cheaper medication needs to be investigated in the form of traditional plants, such as Sutherlandia frutescens. Prescription medication, such as tricyclic antidepressants, may also increase body weight thereby playing a role in obesity. The cause of weight gain in such cases may go unrecognized or lead to cessation of the medication with or without the practitioner’s knowledge or approval. It is therefore necessary to investigate the causative agents responsible for the excessive weight gain. Drinking water containing extracts of S. frutescens or metformin was administered to two groups of eleven insulin resistant male Wistar rats. The insulin resistant control group received water without any medication. Rats were sacrificed after 8 weeks allowing for fasting blood glucose, insulin and tissue glycogen content determination. Glucose uptake was also determined using [3H] deoxyglucose. The effect of the medication and the diet on muscle post receptor insulin signaling proteins was determined through Western blots. Liver proteomics was also performed using 2-D electrophoresis. In a separate experiment 26 male Wistar rats were exposed to strepotozotocin toxin, 7 of these rats received intravenous insulin treatment, 7 rats received S. frutescens extract and 7 rats received a combination of both medications, the remaining 5 received no treatment and served as the control. Rats were sacrificed after 6 days allowing for fasting blood glucose, insulin and tissue glycogen content determination. Two groups of 14 male Wistar rats received amitriptyline or trimipramine (common tricyclic antidepressants) in their drinking water, the control group (30 rats) received water without any medication. The rats’ weight and food consumption was monitored throughout the trial and their oxygen consumption was also determined. Rats were sacrificed after 6 weeks or 14 weeks of medicinal compliance allowing for fasting blood glucose, insulin and tissue glycogen content determination. Glucose uptake was also determined using [3H] deoxyglucose. S. frutescens treatment normalized circulating serum insulin levels and significantly increased the rate of glucose clearance. Certain post receptor insulin signaling proteins were also significantly increased relative to the insulin resistant control group. 2-D electrophoresis identified the normalization of protein levels associated with the urea cycle. S. frutescens was also able to, independently; maintain normoglycaemic levels in the strepotozotocin treated group. The tricyclic antidepressants significantly increased blood glucose levels while significantly reducing tissue glycogen levels for both sacrifice periods. Serum insulin remained unchanged while a significant increase in insulin degradation and insulin degrading enzyme levels were found for both antidepressants. S. frutescens shows promise as a low cost antidiabetic medication for future use. Although the antidepressants did not promote weight gain, the increase in blood glucose levels may be cause for concern in patients with a pre-disposition toward developing diabetes.
- Full Text:
- Date Issued: 2006
Effects of lethal management on black-backed jackal population structure and source-sink dynamics
- Authors: Minnie, Liaan
- Date: 2016
- Subjects: Black-backed jackal Carnivorous animals
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/12658 , vital:27104
- Description: Lethal carnivore management, aimed at reducing carnivore impacts, threatens the persistence of carnivores globally. The effects of killing carnivores will depend on their life histories and social structures. Smaller canids, like black-backed jackals (Canis mesomelas), are highly adaptable and display variable population-level responses to mortality sources, which may contribute to their success in fragmented landscapes. Jackals, the dominant predator of livestock in South Africa, are widely hunted to reduce this predation. This hunting is heterogeneous across the landscape, focussed on livestock and game farms, with nature reserves acting as refuges. The aim of this research was to investigate the ecology and population dynamics of jackals in response to heterogeneous anthropogenic mortality. I hypothesized that the spatial variation in hunting results in the formation of a source-sink population structure, which contributes to the persistence of jackals. I addressed this hypothesis by evaluating two criteria, essential for the formation of a source-sink system in larger mammals. Firstly, I confirm that hunting pressures result in the formation of distinct subpopulations with asymmetrical dispersal (i.e. compensatory immigration) from unhunted reserves to neighbouring hunted farms. Secondly, I show that jackal subpopulation display asynchronous demographics, with farm populations displaying a relatively younger age structure and an associated increase in reproductive output (i.e. compensatory reproduction). This confirms the formation of a hunting-induced source-sink system. additionally, I show that jackals have a catholic diet, which confers a level of adaptability to direct (anthropogenic mortality, prey provisioning) and indirect (alteration in prey base) habitat modifications. This dietary flexibility allows jackals to obtain the appropriate resources to achieve reproductive condition. The relatively better body condition of younger jackals in sink habitats allows for compensatory reproduction which contributes to the success of jackals on hunted farms. Based on my findings, I hypothesize that the compensatory life history responses of jackals to anthropogenic mortality may be ascribed to two interconnected mechanism. Dispersal is presumably driven by density-dependent interference competition, as dominant territorial pairs outcompete subordinates in high-density reserve areas, forcing them to disperse onto low-density farms (i.e. ideal despotic model). Additionally, farms likely represent attractive habitats, owing to a reduction in conspecifics and a concomitant increase in resource availability (including anthropogenic resource provisioning). Therefore, dispersing subordinates presumably select for farms which are perceived as good quality habitats, as the high risks of anthropogenic mortality cannot be perceived by dispersing individuals. This results in the formation of an attractive sink or ecological trap. These compensatory processes will continue to counter population management actions as long as recruitment from unmanaged areas persists. This hypothesis provides a conceptual framework for future research directions in understanding jackal persistence and management (i.e. specifically focussing on controlling dispersal) of jackal populations.
- Full Text:
- Date Issued: 2016
- Authors: Minnie, Liaan
- Date: 2016
- Subjects: Black-backed jackal Carnivorous animals
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/12658 , vital:27104
- Description: Lethal carnivore management, aimed at reducing carnivore impacts, threatens the persistence of carnivores globally. The effects of killing carnivores will depend on their life histories and social structures. Smaller canids, like black-backed jackals (Canis mesomelas), are highly adaptable and display variable population-level responses to mortality sources, which may contribute to their success in fragmented landscapes. Jackals, the dominant predator of livestock in South Africa, are widely hunted to reduce this predation. This hunting is heterogeneous across the landscape, focussed on livestock and game farms, with nature reserves acting as refuges. The aim of this research was to investigate the ecology and population dynamics of jackals in response to heterogeneous anthropogenic mortality. I hypothesized that the spatial variation in hunting results in the formation of a source-sink population structure, which contributes to the persistence of jackals. I addressed this hypothesis by evaluating two criteria, essential for the formation of a source-sink system in larger mammals. Firstly, I confirm that hunting pressures result in the formation of distinct subpopulations with asymmetrical dispersal (i.e. compensatory immigration) from unhunted reserves to neighbouring hunted farms. Secondly, I show that jackal subpopulation display asynchronous demographics, with farm populations displaying a relatively younger age structure and an associated increase in reproductive output (i.e. compensatory reproduction). This confirms the formation of a hunting-induced source-sink system. additionally, I show that jackals have a catholic diet, which confers a level of adaptability to direct (anthropogenic mortality, prey provisioning) and indirect (alteration in prey base) habitat modifications. This dietary flexibility allows jackals to obtain the appropriate resources to achieve reproductive condition. The relatively better body condition of younger jackals in sink habitats allows for compensatory reproduction which contributes to the success of jackals on hunted farms. Based on my findings, I hypothesize that the compensatory life history responses of jackals to anthropogenic mortality may be ascribed to two interconnected mechanism. Dispersal is presumably driven by density-dependent interference competition, as dominant territorial pairs outcompete subordinates in high-density reserve areas, forcing them to disperse onto low-density farms (i.e. ideal despotic model). Additionally, farms likely represent attractive habitats, owing to a reduction in conspecifics and a concomitant increase in resource availability (including anthropogenic resource provisioning). Therefore, dispersing subordinates presumably select for farms which are perceived as good quality habitats, as the high risks of anthropogenic mortality cannot be perceived by dispersing individuals. This results in the formation of an attractive sink or ecological trap. These compensatory processes will continue to counter population management actions as long as recruitment from unmanaged areas persists. This hypothesis provides a conceptual framework for future research directions in understanding jackal persistence and management (i.e. specifically focussing on controlling dispersal) of jackal populations.
- Full Text:
- Date Issued: 2016
Time series models for paired comparisons
- Authors: Sjolander, Morne Rowan
- Date: 2011
- Subjects: Paired comparisons (Statistics)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10577 , http://hdl.handle.net/10948/d1012858
- Description: The method of paired comparisons is seen as a technique used to rank a set of objects with respect to an abstract or immeasurable property. To do this, the objects get to be compared two at a time. The results are input into a model, resulting in numbers known as weights being assigned to the objects. The weights are then used to rank the objects. The method of paired comparisons was first used for psychometric investigations. Various other applications of the method are also present, for example economic applications, and applications in sports statistics. This study involves taking paired comparison models and making them time-dependent. Not much research has been done in this area. Three new time series models for paired comparisons are created. Simulations are done to support the evidence obtained, and theoretical as well as practical examples are given to illustrate the results and to verify the efficiency of the new models. A literature study is given on the method of paired comparisons, as well as on the areas in which we apply our models. Our first two time series models for paired comparisons are the Linear-Trend Bradley- Terry Model and the Sinusoidal Bradley-Terry Model. We use the maximum likelihood approach to solve these models. We test our models using exact and randomly simulated data for various time periods and various numbers of objects. We adapt the Linear-Trend Bradley-Terry Model and received our third time series model for paired comparisons, the Log Linear-Trend Bradley-Terry Model. The daily maximum and minimum temperatures were received for Port Elizabeth, Uitenhage and Coega for 2005 until 2009. To evaluate the performance of the Linear-Trend Bradley-Terry Model and the Sinusoidal Bradley-Terry Model on estimating missing temperature data, we artificially remove observations of temperature from Coega’s temperature dataset for 2006 until 2008, and use various forms of these models to estimate the missing data points. The exchange rates for 2005 until 2008 between the following currencies: the Rand, Dollar, Euro, Pound and Yen, were obtained and various forms of our Log Linear-Trend Bradley-Terry Model are used to forecast the exchange rate for one day ahead for each month in 2006 until 2008. One of the features of this study is that we apply our time series models for paired comparisons to areas which comprise non-standard paired comparisons; and we want to encourage the use of the method of paired comparisons in a broader sense than what it is traditionally used for. The results of this study can be used in various other areas, like for example, in sports statistics, to rank the strength of sports players and predict their future scores; in Physics, to calculate weather risks of electricity generation, particularly risks related to nuclear power plants, and so forth, as well as in many other areas. It is hoped that this research will open the door to much more research in combining time series analysis with the method of paired comparisons.
- Full Text:
- Date Issued: 2011
- Authors: Sjolander, Morne Rowan
- Date: 2011
- Subjects: Paired comparisons (Statistics)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10577 , http://hdl.handle.net/10948/d1012858
- Description: The method of paired comparisons is seen as a technique used to rank a set of objects with respect to an abstract or immeasurable property. To do this, the objects get to be compared two at a time. The results are input into a model, resulting in numbers known as weights being assigned to the objects. The weights are then used to rank the objects. The method of paired comparisons was first used for psychometric investigations. Various other applications of the method are also present, for example economic applications, and applications in sports statistics. This study involves taking paired comparison models and making them time-dependent. Not much research has been done in this area. Three new time series models for paired comparisons are created. Simulations are done to support the evidence obtained, and theoretical as well as practical examples are given to illustrate the results and to verify the efficiency of the new models. A literature study is given on the method of paired comparisons, as well as on the areas in which we apply our models. Our first two time series models for paired comparisons are the Linear-Trend Bradley- Terry Model and the Sinusoidal Bradley-Terry Model. We use the maximum likelihood approach to solve these models. We test our models using exact and randomly simulated data for various time periods and various numbers of objects. We adapt the Linear-Trend Bradley-Terry Model and received our third time series model for paired comparisons, the Log Linear-Trend Bradley-Terry Model. The daily maximum and minimum temperatures were received for Port Elizabeth, Uitenhage and Coega for 2005 until 2009. To evaluate the performance of the Linear-Trend Bradley-Terry Model and the Sinusoidal Bradley-Terry Model on estimating missing temperature data, we artificially remove observations of temperature from Coega’s temperature dataset for 2006 until 2008, and use various forms of these models to estimate the missing data points. The exchange rates for 2005 until 2008 between the following currencies: the Rand, Dollar, Euro, Pound and Yen, were obtained and various forms of our Log Linear-Trend Bradley-Terry Model are used to forecast the exchange rate for one day ahead for each month in 2006 until 2008. One of the features of this study is that we apply our time series models for paired comparisons to areas which comprise non-standard paired comparisons; and we want to encourage the use of the method of paired comparisons in a broader sense than what it is traditionally used for. The results of this study can be used in various other areas, like for example, in sports statistics, to rank the strength of sports players and predict their future scores; in Physics, to calculate weather risks of electricity generation, particularly risks related to nuclear power plants, and so forth, as well as in many other areas. It is hoped that this research will open the door to much more research in combining time series analysis with the method of paired comparisons.
- Full Text:
- Date Issued: 2011
Static and bootstrapped neuro-simulation for complex robots in evolutionary robotics
- Authors: Woodford, Grant Warren
- Date: 2019
- Subjects: Robotics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/44656 , vital:38172
- Description: Evolutionary Robotics (ER) is a field of study focused on the automatic development of controllers and robot morphologies. Evolving controllers on real-world hardware is time-consuming and can damage hardware through wear. Robotic simulators can be used as an alternative to a real-world robot in order to speed up the ER process. Most simulation techniques in practice use physics-based models that rely on an understanding of the robotic system in question. Developing effective physics-based simulators is time consuming and requires a significant level of specialised knowledge. A lengthy simulator development and tuning process is typically required before the ER process can begin. Artificial Neural Networks simulators (SNNs) can be used as an alternative to a physics based simulation approach. SNNs are simple to construct, do not require significant levels of prior knowledge of the robotic system, are computationally efficient and can be highly accurate. Two types of ER approaches utilising SNNs exist. The Static Neuro-Simulation (SNS) approach involves developing SNNs before the ER process where these SNNs are used instead of a physics-based simulator. Alternatively, SNNs can be developed during the ER process, called the Bootstrapped Neuro-Simulation (BNS) approach. Prior work investigating SNNs has largely been limited to simple robots. A complex robot has many degrees of freedom and ifa low-level controller design is used, the solution search space is high-dimensional and difficult to traverse. Prior work investigating the SNS and BNS approaches have mostly relied on simplified controller designs which rely on built-in prior knowledge of intended robot behaviours. This research uses low-level controller designs which in turn rely on low level simulators. Most ER studies are conducted on a single type of robot morphology. This research investigates the SNS and BNS approaches on two significantly different classes of robots. A Hexapod and Snake robot are used to study the SNS and BNS approaches. The Hexapod robot exhibits limbed, walking behaviours. The Snake robot is limbless and generates crawling behaviours. Demonstrating the viability of the SNS and BNS approaches for two different classes of robots provides strong evidence that the tested approaches are likely viable on other classes of robots. Various proposed improvements to the SNS and BNS approaches are investigated. The Results demonstrate that the SNS and BNS approaches are viable when applied to Hexapod and Snake robots without restricting controller designs to those with significant levels of built-in prior knowledge of robot behaviours. SNNs configured in ensembles improve the likely performance outcomes of solutions. The expected benefit of adding simulator noise during the evolutionary process were not as pronounced for problems investigated in this work.
- Full Text:
- Date Issued: 2019
- Authors: Woodford, Grant Warren
- Date: 2019
- Subjects: Robotics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/44656 , vital:38172
- Description: Evolutionary Robotics (ER) is a field of study focused on the automatic development of controllers and robot morphologies. Evolving controllers on real-world hardware is time-consuming and can damage hardware through wear. Robotic simulators can be used as an alternative to a real-world robot in order to speed up the ER process. Most simulation techniques in practice use physics-based models that rely on an understanding of the robotic system in question. Developing effective physics-based simulators is time consuming and requires a significant level of specialised knowledge. A lengthy simulator development and tuning process is typically required before the ER process can begin. Artificial Neural Networks simulators (SNNs) can be used as an alternative to a physics based simulation approach. SNNs are simple to construct, do not require significant levels of prior knowledge of the robotic system, are computationally efficient and can be highly accurate. Two types of ER approaches utilising SNNs exist. The Static Neuro-Simulation (SNS) approach involves developing SNNs before the ER process where these SNNs are used instead of a physics-based simulator. Alternatively, SNNs can be developed during the ER process, called the Bootstrapped Neuro-Simulation (BNS) approach. Prior work investigating SNNs has largely been limited to simple robots. A complex robot has many degrees of freedom and ifa low-level controller design is used, the solution search space is high-dimensional and difficult to traverse. Prior work investigating the SNS and BNS approaches have mostly relied on simplified controller designs which rely on built-in prior knowledge of intended robot behaviours. This research uses low-level controller designs which in turn rely on low level simulators. Most ER studies are conducted on a single type of robot morphology. This research investigates the SNS and BNS approaches on two significantly different classes of robots. A Hexapod and Snake robot are used to study the SNS and BNS approaches. The Hexapod robot exhibits limbed, walking behaviours. The Snake robot is limbless and generates crawling behaviours. Demonstrating the viability of the SNS and BNS approaches for two different classes of robots provides strong evidence that the tested approaches are likely viable on other classes of robots. Various proposed improvements to the SNS and BNS approaches are investigated. The Results demonstrate that the SNS and BNS approaches are viable when applied to Hexapod and Snake robots without restricting controller designs to those with significant levels of built-in prior knowledge of robot behaviours. SNNs configured in ensembles improve the likely performance outcomes of solutions. The expected benefit of adding simulator noise during the evolutionary process were not as pronounced for problems investigated in this work.
- Full Text:
- Date Issued: 2019
Anti-diabetic and phytochemical analysis of sutherlandia frutescens extracts
- Authors: Adefuye, Ogheneochuko Janet
- Date: 2016
- Subjects: Medicinal plants -- Africa , Traditional medicine -- Africa , Herbs -- Therapeutic use -- Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/3549 , vital:20441
- Description: In Africa, the importance of medicinal plants in folklore medicine and their contribution to primary healthcare is well recognized. Across the continent, local herbal mixtures still provide the only therapeutic option for about 80% of the population. The vast floral diversity and the intrinsic ethnobotanical knowledge has been the backbone of localized traditional herbal medical practices. In Africa, an estimated 5400 of the 60000 described plant taxa possess over 16300 therapeutic uses. Similarly, with a therapeutic flora comprising of approximately 650 species, herbal medical practitioners in South Africa, make use of a plethora of plants to treat different human diseases and infections. Over the years, studies have identified numerous plant species with potential against chronic metabolic diseases including type 2 diabetes mellitus (T2DM). Globally, the incidence and prevalence of T2DM have reached epidemic proportions affecting people of all ages, nationalities and ethnicity. Considered the fourth leading cause of deaths by disease, T2DM is a global health crisis with an estimated diagnosis and mortality frequency of 1 every 5 seconds and 1 every 7 seconds respectively. Though the exact pathophysiology of T2DM is not entirely understood, initial peripheral insulin resistance in adipose tissue, liver, and skeletal muscle with subsequent pancreatic β-cell dysfunction resulting from an attempt to compensate for insulin resistance is a common feature of the disease. The current approach to treating T2DM is the use of oral antidiabetic agents (OAAs), insulin, and incretin-based drugs in an attempt to achieve glycaemic control and maintain glucose homeostasis. However, conventional anti-T2DM drugs have been shown to have limited efficacies and serious adverse effects. Hence, the need for newer, more efficacious and safer anti-T2DM agents. Sutherlandia frutescens subsp. microphylla is a flowering shrub of the pea family (Fabaceae/Leguminaceae) found mainly in the Western Cape and Karoo regions of Southern Africa. Concoctions of various parts of the plant are used in the management of different ailments including T2DM. However, despite extensive biological and pharmacological studies, few analyses exist of the chemical constituents of S. frutescens and no Triple Time of Flight Liquid Chromatography with Mass Spectrometry (Triple TOF LC/MS/MS) analysis has been performed. The initial aim of this study was to investigate the phytochemical profile of hot aqueous, cold aqueous, 80% ethanolic, 100% ethanolic, 80% methanolic and 100% methanolic extracts of a single source S. frutescens plant material using colorimetric and spectrophotometric analysis. The hot aqueous extractant was found to be the best extractant for S. frutescens, yielding 1.99 g of crude extract from 16 g fresh powdered plant material. This data suggests that application of heat and water as the extractant (hot aqueous) could play a vital role in extraction of bioactive compounds from S. frutescens and also justifies the traditional use of a tea infusion of S. frutescens. Colorimetric analysis revealed the presence of flavonoids, flavonols, tannins, and phenols in all extracts with varying intensity. The organic extracts 100% methanol, 80% and 100% ethanol exhibited high color intensity (+++) for flavonoids and flavonols respectively, while all the extracts exhibited a moderate color intensity (++) for tannins and phenols. Spectrophotometric analysis of S. frutescens extracts revealed that all the organic extracts contained a significantly higher concentration (in mg/g of extract) of flavonols and tannins when compared to the aqueous extracts. All extracts contained approximately equal levels of phenols. These data confirm the presence of all four groups of bioactive phytocompounds in the S. frutescens extracts used in this study, and also confirm that different solvent extractants possess the capability to differentially extract specific groups of phytocompounds. in individual extracts. Further comparison of these compounds with online databases of anti-diabetic phytocompounds led to the preliminary identification of 10 possible anti-diabetic compounds; α-Pinene, Limonene, Sabinene, Carvone, Myricetin, Rutin, Stigmasterol, Emodin, Sarpagine and Hypoglycin B in crude and solid phase extraction (SPE) fractions of S. frutesecens. Furthermore, using two hepatic cell lines (Chang and HepG2) as an in-vtro model system, the anti-T2DM properties of crude aqueous and organic extracts of S. frutescents was investigated and compared. Both aqueous and organic extracts of S. frutescens were found to decrease gluconeogenesis, increase glucose uptake and decrease lipid accumulation (Triacylglycerol, Diacylglycerol, and Monoacylglycerol) in Chang and HepG2 hepatic cell cultures made insulin resistant (IR) following exposure to high concentration of insulin and fructose. Using real-time quantitative reverse transcriptase polymerase chain reaction (qRT-PCR), the aqueous and organic extracts of S. frutescens were confirmed to regulate the expression of Vesicle-associated membrane protein 3 (VAMP3), Mitogen-activated protein kinase 8 (MAPK8), and Insulin receptor substrate 1 (IRS1) in insulin resistant hepatic cells. IR-mediated downregulation of VAMP3, MAPK8, and IRS1 mRNA in IR HepG2 hepatic cell cultures was reversed in the presence of aqueous and organic extracts of S. frutescens. The hot aqueous extract displayed the highest activity in all the assays, while all the organic extracts displayed similar potency. In conclusion, this study reports that aqueous and organic extracts of S. frutescens possess numerous anti-diabetic compounds that can be further investigated for the development of new, more efficacious and less toxic anti-diabetic agents. The presence of multiple compounds in a single extract does suggest a synergistic or combinatorial therapeutic effect. These findings support the burgeoning body of in-vivo and in-vitro literature evidence on the anti-diabetic properties of S. frutescens and its use in folklore medicine.
- Full Text:
- Date Issued: 2016
- Authors: Adefuye, Ogheneochuko Janet
- Date: 2016
- Subjects: Medicinal plants -- Africa , Traditional medicine -- Africa , Herbs -- Therapeutic use -- Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/3549 , vital:20441
- Description: In Africa, the importance of medicinal plants in folklore medicine and their contribution to primary healthcare is well recognized. Across the continent, local herbal mixtures still provide the only therapeutic option for about 80% of the population. The vast floral diversity and the intrinsic ethnobotanical knowledge has been the backbone of localized traditional herbal medical practices. In Africa, an estimated 5400 of the 60000 described plant taxa possess over 16300 therapeutic uses. Similarly, with a therapeutic flora comprising of approximately 650 species, herbal medical practitioners in South Africa, make use of a plethora of plants to treat different human diseases and infections. Over the years, studies have identified numerous plant species with potential against chronic metabolic diseases including type 2 diabetes mellitus (T2DM). Globally, the incidence and prevalence of T2DM have reached epidemic proportions affecting people of all ages, nationalities and ethnicity. Considered the fourth leading cause of deaths by disease, T2DM is a global health crisis with an estimated diagnosis and mortality frequency of 1 every 5 seconds and 1 every 7 seconds respectively. Though the exact pathophysiology of T2DM is not entirely understood, initial peripheral insulin resistance in adipose tissue, liver, and skeletal muscle with subsequent pancreatic β-cell dysfunction resulting from an attempt to compensate for insulin resistance is a common feature of the disease. The current approach to treating T2DM is the use of oral antidiabetic agents (OAAs), insulin, and incretin-based drugs in an attempt to achieve glycaemic control and maintain glucose homeostasis. However, conventional anti-T2DM drugs have been shown to have limited efficacies and serious adverse effects. Hence, the need for newer, more efficacious and safer anti-T2DM agents. Sutherlandia frutescens subsp. microphylla is a flowering shrub of the pea family (Fabaceae/Leguminaceae) found mainly in the Western Cape and Karoo regions of Southern Africa. Concoctions of various parts of the plant are used in the management of different ailments including T2DM. However, despite extensive biological and pharmacological studies, few analyses exist of the chemical constituents of S. frutescens and no Triple Time of Flight Liquid Chromatography with Mass Spectrometry (Triple TOF LC/MS/MS) analysis has been performed. The initial aim of this study was to investigate the phytochemical profile of hot aqueous, cold aqueous, 80% ethanolic, 100% ethanolic, 80% methanolic and 100% methanolic extracts of a single source S. frutescens plant material using colorimetric and spectrophotometric analysis. The hot aqueous extractant was found to be the best extractant for S. frutescens, yielding 1.99 g of crude extract from 16 g fresh powdered plant material. This data suggests that application of heat and water as the extractant (hot aqueous) could play a vital role in extraction of bioactive compounds from S. frutescens and also justifies the traditional use of a tea infusion of S. frutescens. Colorimetric analysis revealed the presence of flavonoids, flavonols, tannins, and phenols in all extracts with varying intensity. The organic extracts 100% methanol, 80% and 100% ethanol exhibited high color intensity (+++) for flavonoids and flavonols respectively, while all the extracts exhibited a moderate color intensity (++) for tannins and phenols. Spectrophotometric analysis of S. frutescens extracts revealed that all the organic extracts contained a significantly higher concentration (in mg/g of extract) of flavonols and tannins when compared to the aqueous extracts. All extracts contained approximately equal levels of phenols. These data confirm the presence of all four groups of bioactive phytocompounds in the S. frutescens extracts used in this study, and also confirm that different solvent extractants possess the capability to differentially extract specific groups of phytocompounds. in individual extracts. Further comparison of these compounds with online databases of anti-diabetic phytocompounds led to the preliminary identification of 10 possible anti-diabetic compounds; α-Pinene, Limonene, Sabinene, Carvone, Myricetin, Rutin, Stigmasterol, Emodin, Sarpagine and Hypoglycin B in crude and solid phase extraction (SPE) fractions of S. frutesecens. Furthermore, using two hepatic cell lines (Chang and HepG2) as an in-vtro model system, the anti-T2DM properties of crude aqueous and organic extracts of S. frutescents was investigated and compared. Both aqueous and organic extracts of S. frutescens were found to decrease gluconeogenesis, increase glucose uptake and decrease lipid accumulation (Triacylglycerol, Diacylglycerol, and Monoacylglycerol) in Chang and HepG2 hepatic cell cultures made insulin resistant (IR) following exposure to high concentration of insulin and fructose. Using real-time quantitative reverse transcriptase polymerase chain reaction (qRT-PCR), the aqueous and organic extracts of S. frutescens were confirmed to regulate the expression of Vesicle-associated membrane protein 3 (VAMP3), Mitogen-activated protein kinase 8 (MAPK8), and Insulin receptor substrate 1 (IRS1) in insulin resistant hepatic cells. IR-mediated downregulation of VAMP3, MAPK8, and IRS1 mRNA in IR HepG2 hepatic cell cultures was reversed in the presence of aqueous and organic extracts of S. frutescens. The hot aqueous extract displayed the highest activity in all the assays, while all the organic extracts displayed similar potency. In conclusion, this study reports that aqueous and organic extracts of S. frutescens possess numerous anti-diabetic compounds that can be further investigated for the development of new, more efficacious and less toxic anti-diabetic agents. The presence of multiple compounds in a single extract does suggest a synergistic or combinatorial therapeutic effect. These findings support the burgeoning body of in-vivo and in-vitro literature evidence on the anti-diabetic properties of S. frutescens and its use in folklore medicine.
- Full Text:
- Date Issued: 2016
An investigation into the use of guidelines and patterns in the interaction design process
- Authors: Cowley, Niel Lester Orr
- Date: 2009
- Subjects: Human-computer interaction , Web sites -- Design , User interfaces (Computer systems) -- Design
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10466 , http://hdl.handle.net/10948/1062 , Human-computer interaction , Web sites -- Design , User interfaces (Computer systems) -- Design
- Description: Design guidelines are used in interaction design (IxD) for physical design and for evaluating the usability of designs and interactive products. Guidelines are widely used for physical design and evaluation, but have a number of problems. IxD patterns have been proposed as an alternative to guidelines, as they are claimed to have several advantages over guidelines. A small number of empirical studies provide evidence that patterns are beneficial when used in IxD. Additional research on the usefulness of IxD patterns is required. The primary research question investigated in this thesis was thus: How useful are IxD patterns as physical design and evaluation aids in IxD, as compared to design guidelines? The role of guidelines and patterns as design and evaluation aids in IxD was investigated and a comparison of guidelines and patterns, based on a set of guideline and pattern properties, was conducted. The concept of pattern and guideline usefulness was explored and a research agenda for guidelines and patterns was identified, together with a set of research questions for an empirical study. The empirical study of the use of patterns for evaluation, redesign and new design, as compared to guidelines, was conducted at the Nelson Mandela Metropolitan University in 2004. The participants were a purposive sample of post-graduate Computing students, who were regarded as novice interaction designers. Two equivalent groups were formed, one that used patterns and one that used guidelines. Patterns were found to be as useful as guidelines when used as evaluation aids. Guidelines and patterns were identified as effective tools for identifying and explaining usability issues and design features. Best-effort matched sets of guidelines and patterns produced substantially different result sets when used to identify issues and features, with fairly low overlap. A substantial evaluator effect was observed for the use of guidelines and patterns for evaluation, and the results obtained were similar to those obtained by Molich et al. in their Comparative Usability Evaluation (CUE) studies. There was no statistically significant difference between the effectiveness of guidelines and patterns for evaluation. There was also no statistically significant difference between the perceived efficiency, effectiveness and satisfaction in use of guidelines and patterns for evaluation. Guidelines and patterns were found to be used in similar ways for evaluation. Patterns were found to be more effective than guidelines for redesign. Patterns were found to be as useful as guidelines when used for new design. There was no statistically significant difference between the effectiveness of guidelines and patterns for new design. There was also no statistically significant difference between the perceived efficiency, effectiveness and satisfaction in use of guidelines and patterns for redesign and new design. Guidelines and patterns were found to be used in similar ways for design. There was no statistically significant difference between the perceived usefulness of the format, content, ease of learning, and usefulness as personal and shared design languages, of guidelines and patterns. Both participant groups were equally agreeable to using guidelines and patterns in the future. The perceived usefulness of pattern collections was found to depend on the usability of the collection interface and the content quality of the patterns. The results of the empirical study thus provided empirical evidence that patterns were as useful as guidelines for evaluation and new design, and were perceived as positively as guidelines were. Patterns were found to be superior to guidelines for redesign. Patterns can therefore be used with a measure of confidence as early stage design aids for physical design and evaluation in the future. In addition to these findings, a number of opportunities for further research were identified.
- Full Text:
- Date Issued: 2009
- Authors: Cowley, Niel Lester Orr
- Date: 2009
- Subjects: Human-computer interaction , Web sites -- Design , User interfaces (Computer systems) -- Design
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10466 , http://hdl.handle.net/10948/1062 , Human-computer interaction , Web sites -- Design , User interfaces (Computer systems) -- Design
- Description: Design guidelines are used in interaction design (IxD) for physical design and for evaluating the usability of designs and interactive products. Guidelines are widely used for physical design and evaluation, but have a number of problems. IxD patterns have been proposed as an alternative to guidelines, as they are claimed to have several advantages over guidelines. A small number of empirical studies provide evidence that patterns are beneficial when used in IxD. Additional research on the usefulness of IxD patterns is required. The primary research question investigated in this thesis was thus: How useful are IxD patterns as physical design and evaluation aids in IxD, as compared to design guidelines? The role of guidelines and patterns as design and evaluation aids in IxD was investigated and a comparison of guidelines and patterns, based on a set of guideline and pattern properties, was conducted. The concept of pattern and guideline usefulness was explored and a research agenda for guidelines and patterns was identified, together with a set of research questions for an empirical study. The empirical study of the use of patterns for evaluation, redesign and new design, as compared to guidelines, was conducted at the Nelson Mandela Metropolitan University in 2004. The participants were a purposive sample of post-graduate Computing students, who were regarded as novice interaction designers. Two equivalent groups were formed, one that used patterns and one that used guidelines. Patterns were found to be as useful as guidelines when used as evaluation aids. Guidelines and patterns were identified as effective tools for identifying and explaining usability issues and design features. Best-effort matched sets of guidelines and patterns produced substantially different result sets when used to identify issues and features, with fairly low overlap. A substantial evaluator effect was observed for the use of guidelines and patterns for evaluation, and the results obtained were similar to those obtained by Molich et al. in their Comparative Usability Evaluation (CUE) studies. There was no statistically significant difference between the effectiveness of guidelines and patterns for evaluation. There was also no statistically significant difference between the perceived efficiency, effectiveness and satisfaction in use of guidelines and patterns for evaluation. Guidelines and patterns were found to be used in similar ways for evaluation. Patterns were found to be more effective than guidelines for redesign. Patterns were found to be as useful as guidelines when used for new design. There was no statistically significant difference between the effectiveness of guidelines and patterns for new design. There was also no statistically significant difference between the perceived efficiency, effectiveness and satisfaction in use of guidelines and patterns for redesign and new design. Guidelines and patterns were found to be used in similar ways for design. There was no statistically significant difference between the perceived usefulness of the format, content, ease of learning, and usefulness as personal and shared design languages, of guidelines and patterns. Both participant groups were equally agreeable to using guidelines and patterns in the future. The perceived usefulness of pattern collections was found to depend on the usability of the collection interface and the content quality of the patterns. The results of the empirical study thus provided empirical evidence that patterns were as useful as guidelines for evaluation and new design, and were perceived as positively as guidelines were. Patterns were found to be superior to guidelines for redesign. Patterns can therefore be used with a measure of confidence as early stage design aids for physical design and evaluation in the future. In addition to these findings, a number of opportunities for further research were identified.
- Full Text:
- Date Issued: 2009
Spatially resolved opto-electric measurements of photovoltaic materials and devices
- Authors: Thantsha, Nicolas Matome
- Date: 2010
- Subjects: Photovoltaic cells , Photovoltaic power systems , Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10520 , http://hdl.handle.net/10948/1123 , Photovoltaic cells , Photovoltaic power systems , Photovoltaic power generation
- Description: The objective of this study is to characterize and analyse defects in solar cell devices. Materials used to fabricate solar cells are not defects free and therefore, there is a need to investigate defects in cells. To investigate this, a topographical technique was developed and employed which uses a non-destructive methodology to analyse solar cells. A system was built which uses a technique based on a laser beam induced current (LBIC). LBIC technique involves focusing light on to a surface of a solar cell device in order to create a photo-generated current that can be measured in the external circuit for analyses. The advantage of this technique is that it allows parameter extraction. Parameters that can be extracted include short-circuit current, carrier lifetime and also the external and internal quantum efficiency of a solar cell. In this thesis, LBIC measurements in the form of picture maps are used to indicate the distribution of the localized beam induced current within solar cells. Areas with low minority carrier lifetime in solar cells are made visible by LBIC mapping. Surface reflection intensity measurements of cells can also be mapped using the LBIC system developed in this study. The system is also capable of mapping photo-generated current of a cell below and above room temperature. This thesis also presents an assessment procedure capable of assessing the device and performance parameters with reference to I-V measurements. The dark and illuminated I-V characteristics of solar cells were investigated. The illuminated I-V characteristics of solar cells were obtained using a defocused laser beam. Dark I-V measurements were performed by applying voltage across the cell in the dark and measuring a current through it. The device parameters which describe the behaviour of I-V characteristic were extracted from the I-V data using Particle Swarm Optimization (PSO) method based on a one-and two-diode solar cell models. Solar cells of different technologies were analysed, namely, single-crystalline (c-Si) and multicrystalline (mc-Si) silicon, Edge-defined Film-fed Growth Si (EFG-Si) and Cu(In,Ga)(Se,S)2 (CIGSS) thin film based cells. The LBIC results illustrated the effect of surface reflection features and material defects in the solar cell investigated. IQE at a wavelength of 660 nm were measured on these cells and the results in general emphasised the importance of correcting optical losses, i.e. reflection loss, when characterizing different types of defects. The agreement between the IQE measurements and I-V characteristics of a cell showed that the differences in crystal grains influence the performance of a mc-Si cell. The temperature-dependence of I-V characteristics of a CIGSS solar cell was investigated. The results showed that, for this material, the photo response is reduced at elevated temperatures. In addition to LBIC using a laser beam, solar spectral radiation was employed to obtained device performance parameters. The results emphasised the effect of grain boundaries as a recombination centres for photo-generated hole-pairs. Lastly, mesa diode characterizations of solar cells were investigated. Mesa diodes are achieved by etching down a solar cell so that the plateau regions are formed. Mesa diodes expose the p-n junction, and therefore mesa diode analysis provides a better way of determining and revealing the fundamental current conduction mechanism at the junction. Mesa diodes avoid possible edge effects. This study showed that mesa diodes can be used to characterize spatial non-uniformities in solar cells. The results obtained in this study indicate that LBIC is a useful tool for defect characterization in solar cells. Also LBIC complements other characterization techniques such as I-V characterization.
- Full Text:
- Date Issued: 2010
- Authors: Thantsha, Nicolas Matome
- Date: 2010
- Subjects: Photovoltaic cells , Photovoltaic power systems , Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10520 , http://hdl.handle.net/10948/1123 , Photovoltaic cells , Photovoltaic power systems , Photovoltaic power generation
- Description: The objective of this study is to characterize and analyse defects in solar cell devices. Materials used to fabricate solar cells are not defects free and therefore, there is a need to investigate defects in cells. To investigate this, a topographical technique was developed and employed which uses a non-destructive methodology to analyse solar cells. A system was built which uses a technique based on a laser beam induced current (LBIC). LBIC technique involves focusing light on to a surface of a solar cell device in order to create a photo-generated current that can be measured in the external circuit for analyses. The advantage of this technique is that it allows parameter extraction. Parameters that can be extracted include short-circuit current, carrier lifetime and also the external and internal quantum efficiency of a solar cell. In this thesis, LBIC measurements in the form of picture maps are used to indicate the distribution of the localized beam induced current within solar cells. Areas with low minority carrier lifetime in solar cells are made visible by LBIC mapping. Surface reflection intensity measurements of cells can also be mapped using the LBIC system developed in this study. The system is also capable of mapping photo-generated current of a cell below and above room temperature. This thesis also presents an assessment procedure capable of assessing the device and performance parameters with reference to I-V measurements. The dark and illuminated I-V characteristics of solar cells were investigated. The illuminated I-V characteristics of solar cells were obtained using a defocused laser beam. Dark I-V measurements were performed by applying voltage across the cell in the dark and measuring a current through it. The device parameters which describe the behaviour of I-V characteristic were extracted from the I-V data using Particle Swarm Optimization (PSO) method based on a one-and two-diode solar cell models. Solar cells of different technologies were analysed, namely, single-crystalline (c-Si) and multicrystalline (mc-Si) silicon, Edge-defined Film-fed Growth Si (EFG-Si) and Cu(In,Ga)(Se,S)2 (CIGSS) thin film based cells. The LBIC results illustrated the effect of surface reflection features and material defects in the solar cell investigated. IQE at a wavelength of 660 nm were measured on these cells and the results in general emphasised the importance of correcting optical losses, i.e. reflection loss, when characterizing different types of defects. The agreement between the IQE measurements and I-V characteristics of a cell showed that the differences in crystal grains influence the performance of a mc-Si cell. The temperature-dependence of I-V characteristics of a CIGSS solar cell was investigated. The results showed that, for this material, the photo response is reduced at elevated temperatures. In addition to LBIC using a laser beam, solar spectral radiation was employed to obtained device performance parameters. The results emphasised the effect of grain boundaries as a recombination centres for photo-generated hole-pairs. Lastly, mesa diode characterizations of solar cells were investigated. Mesa diodes are achieved by etching down a solar cell so that the plateau regions are formed. Mesa diodes expose the p-n junction, and therefore mesa diode analysis provides a better way of determining and revealing the fundamental current conduction mechanism at the junction. Mesa diodes avoid possible edge effects. This study showed that mesa diodes can be used to characterize spatial non-uniformities in solar cells. The results obtained in this study indicate that LBIC is a useful tool for defect characterization in solar cells. Also LBIC complements other characterization techniques such as I-V characterization.
- Full Text:
- Date Issued: 2010
The consolidation of forecests with regression models
- Venter, Daniel Jacobus Lodewyk
- Authors: Venter, Daniel Jacobus Lodewyk
- Date: 2014
- Subjects: Regression analysis -- Mathematical models , Forecasting -- Mathematical models
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10582 , http://hdl.handle.net/10948/d1020964
- Description: The primary objective of this study was to develop a dashboard for the consolidation of multiple forecasts utilising a range of multiple linear regression models. The term dashboard is used to describe with a single word the characteristics of the forecasts consolidation application that was developed to provide the required functionalities via a graphical user interface structured as a series of interlinked screens. Microsoft Excel© was used as the platform to develop the dashboard named ConFoRM (acronym for Consolidate Forecasts with Regression Models). The major steps of the consolidation process incorporated in ConFoRM are: 1. Input historical data. Select appropriate analysis and holdout samples. 3. Specify regression models to be considered as candidates for the final model to be used for the consolidation of forecasts. 4. Perform regression analysis and holdout analysis for each of the models specified in step 3. 5. Perform post-holdout testing to assess the performance of the model with best holdout validation results on out-of-sample data. 6. Consolidate forecasts. Two data transformations are available: the removal of growth and time-periods effect from the time series; a translation of the time series by subtracting ̅i, the mean of all the forecasts for data record i, from the variable being predicted and its related forecasts for each data record I. The pre-defined regression models available for ordinary least square linear regression models (LRM) are: a. A set of k simple LRM’s, one for each of the k forecasts; b. A multiple LRM that includes all the forecasts: c. A multiple LRM that includes all the forecasts and as many of the first-order interactions between the input forecasts as allowed by the sample size and the maximum number of predictors provided by the dashboard with the interactions included in the model to be those with the highest individual correlation with the variable being predicted; d. A multiple LRM that includes as many of the forecasts and first-order interactions between the input forecasts as allowed by the sample size and the maximum number of predictors provided by the dashboard: with the forecasts and interactions included in the model to be those with the highest individual correlation with the variable being predicted; e. A simple LRM with the predictor variable being the mean of the forecasts: f. A set of simple LRM’s with the predictor variable in each case being the weighted mean of the forecasts with different formulas for the weights Also available is an ad hoc user specified model in terms of the forecasts and the predictor variables generated by the dashboard for the pre-defined models. Provision is made in the regression analysis for both of forward entry and backward removal regression. Weighted least squares (WLS) regression can be performed optionally based on the age of forecasts with smaller weight for older forecasts.
- Full Text:
- Date Issued: 2014
- Authors: Venter, Daniel Jacobus Lodewyk
- Date: 2014
- Subjects: Regression analysis -- Mathematical models , Forecasting -- Mathematical models
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10582 , http://hdl.handle.net/10948/d1020964
- Description: The primary objective of this study was to develop a dashboard for the consolidation of multiple forecasts utilising a range of multiple linear regression models. The term dashboard is used to describe with a single word the characteristics of the forecasts consolidation application that was developed to provide the required functionalities via a graphical user interface structured as a series of interlinked screens. Microsoft Excel© was used as the platform to develop the dashboard named ConFoRM (acronym for Consolidate Forecasts with Regression Models). The major steps of the consolidation process incorporated in ConFoRM are: 1. Input historical data. Select appropriate analysis and holdout samples. 3. Specify regression models to be considered as candidates for the final model to be used for the consolidation of forecasts. 4. Perform regression analysis and holdout analysis for each of the models specified in step 3. 5. Perform post-holdout testing to assess the performance of the model with best holdout validation results on out-of-sample data. 6. Consolidate forecasts. Two data transformations are available: the removal of growth and time-periods effect from the time series; a translation of the time series by subtracting ̅i, the mean of all the forecasts for data record i, from the variable being predicted and its related forecasts for each data record I. The pre-defined regression models available for ordinary least square linear regression models (LRM) are: a. A set of k simple LRM’s, one for each of the k forecasts; b. A multiple LRM that includes all the forecasts: c. A multiple LRM that includes all the forecasts and as many of the first-order interactions between the input forecasts as allowed by the sample size and the maximum number of predictors provided by the dashboard with the interactions included in the model to be those with the highest individual correlation with the variable being predicted; d. A multiple LRM that includes as many of the forecasts and first-order interactions between the input forecasts as allowed by the sample size and the maximum number of predictors provided by the dashboard: with the forecasts and interactions included in the model to be those with the highest individual correlation with the variable being predicted; e. A simple LRM with the predictor variable being the mean of the forecasts: f. A set of simple LRM’s with the predictor variable in each case being the weighted mean of the forecasts with different formulas for the weights Also available is an ad hoc user specified model in terms of the forecasts and the predictor variables generated by the dashboard for the pre-defined models. Provision is made in the regression analysis for both of forward entry and backward removal regression. Weighted least squares (WLS) regression can be performed optionally based on the age of forecasts with smaller weight for older forecasts.
- Full Text:
- Date Issued: 2014
Fire regimes in eastern coastal fynbos: drivers, ecology and management
- Authors: Kraaij, Tineke
- Date: 2012
- Subjects: Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10607 , http://hdl.handle.net/10948/d1008047 , Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Description: Conventional knowledge of fynbos fire ecology is based on the summer-autumn fire regimes of the western Cape Floral Kingdom (CFK) where the climate is Mediterranean. However, the climate in the eastern coastal-CFK is milder and rainfall occurs year-round, with presumed effects on fire regimes. The Garden Route National Park (GRNP) has recently been established in the region, in a landscape where indigenous forests, fire-prone fynbos shrublands and fire-sensitive plantations of invasive alien trees are interspersed. The park faces considerable challenges related to the management of fire, including significant pressure from the adjacent plantation industry to reduce wildfire hazard by burning fynbos at short intervals, and high levels of invasion by alien trees (largely Pinus species originating from plantations). This study sought to improve understanding of fire regimes in eastern coastal fynbos shrublands, and to provide guidelines for ecologically sound management of fire in the area. My approach entailed (i) an assessment of the context within which fire management was practiced during the past century; (ii) characterisation of the recent fire history and fire regime (1900–2010); (iii) characterisation of the seasonality of fire weather and lightning; (iv) estimation of minimum fire return intervals (FRIs) from juvenile periods and post-fire recruitment success of overstorey proteoids (non-sprouting, slow-maturing, serotinous Proteaceae); and (v) determination of the ecologically appropriate fire season from post-fire recruitment seasonality of proteoids. I established that historically, plantation protection enjoyed priority over fynbos conservation in the area that is now the GRNP. Fynbos close to plantations has most likely been compromised by frequent and low-intensity burning in the past, as well as by invasion by alien trees. In terms of area burnt (1900–2010), natural (lightning-ignited) fires dominated the fire regime, particularly in the east, whereas prescribed burning was relatively unimportant. Typical fire return intervals (FRIs; 8–26 years; 1980–2010) were comparable to those in other fynbos protected areas and appeared to be shorter in the eastern Tsitsikamma than in the western Outeniqua halves of the study area. Proteaceae juvenile periods (4–9 years) and post-fire recruitment success (following fires in ≥7 year-old vegetation) suggested that for biodiversity conservation purposes, FRIs should be no less than nine years in moist, productive fynbos. Increases in the total area burnt annually (since 1980) were correlated with long-term increases in average fire danger weather, suggesting that fire regime changes may be related to global change. Collectively, findings on the seasonality of actual fires and the seasonality of fire danger weather, lightning, and post-fire proteoid recruitment suggested that fires in eastern coastal fynbos are not limited to any particular season, and for this reason managers do not need to be concerned if fires occur in any season. The ecological requirements for higher fire intensity may nonetheless be constrained by a need for safety. I articulated these findings into ecological thresholds pertaining to the different elements of the fire regime in eastern coastal fynbos, to guide adaptive management of fire in the Garden Route National Park. I also recommended a fire management strategy for the park to address the aforementioned operational considerations within the constraints posed by ecological thresholds. Finally, I highlighted further research and monitoring needs.
- Full Text:
- Date Issued: 2012
- Authors: Kraaij, Tineke
- Date: 2012
- Subjects: Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10607 , http://hdl.handle.net/10948/d1008047 , Forest fires -- South Africa , Climatic changes , Prescribed burning , Fire ecology -- South Africa
- Description: Conventional knowledge of fynbos fire ecology is based on the summer-autumn fire regimes of the western Cape Floral Kingdom (CFK) where the climate is Mediterranean. However, the climate in the eastern coastal-CFK is milder and rainfall occurs year-round, with presumed effects on fire regimes. The Garden Route National Park (GRNP) has recently been established in the region, in a landscape where indigenous forests, fire-prone fynbos shrublands and fire-sensitive plantations of invasive alien trees are interspersed. The park faces considerable challenges related to the management of fire, including significant pressure from the adjacent plantation industry to reduce wildfire hazard by burning fynbos at short intervals, and high levels of invasion by alien trees (largely Pinus species originating from plantations). This study sought to improve understanding of fire regimes in eastern coastal fynbos shrublands, and to provide guidelines for ecologically sound management of fire in the area. My approach entailed (i) an assessment of the context within which fire management was practiced during the past century; (ii) characterisation of the recent fire history and fire regime (1900–2010); (iii) characterisation of the seasonality of fire weather and lightning; (iv) estimation of minimum fire return intervals (FRIs) from juvenile periods and post-fire recruitment success of overstorey proteoids (non-sprouting, slow-maturing, serotinous Proteaceae); and (v) determination of the ecologically appropriate fire season from post-fire recruitment seasonality of proteoids. I established that historically, plantation protection enjoyed priority over fynbos conservation in the area that is now the GRNP. Fynbos close to plantations has most likely been compromised by frequent and low-intensity burning in the past, as well as by invasion by alien trees. In terms of area burnt (1900–2010), natural (lightning-ignited) fires dominated the fire regime, particularly in the east, whereas prescribed burning was relatively unimportant. Typical fire return intervals (FRIs; 8–26 years; 1980–2010) were comparable to those in other fynbos protected areas and appeared to be shorter in the eastern Tsitsikamma than in the western Outeniqua halves of the study area. Proteaceae juvenile periods (4–9 years) and post-fire recruitment success (following fires in ≥7 year-old vegetation) suggested that for biodiversity conservation purposes, FRIs should be no less than nine years in moist, productive fynbos. Increases in the total area burnt annually (since 1980) were correlated with long-term increases in average fire danger weather, suggesting that fire regime changes may be related to global change. Collectively, findings on the seasonality of actual fires and the seasonality of fire danger weather, lightning, and post-fire proteoid recruitment suggested that fires in eastern coastal fynbos are not limited to any particular season, and for this reason managers do not need to be concerned if fires occur in any season. The ecological requirements for higher fire intensity may nonetheless be constrained by a need for safety. I articulated these findings into ecological thresholds pertaining to the different elements of the fire regime in eastern coastal fynbos, to guide adaptive management of fire in the Garden Route National Park. I also recommended a fire management strategy for the park to address the aforementioned operational considerations within the constraints posed by ecological thresholds. Finally, I highlighted further research and monitoring needs.
- Full Text:
- Date Issued: 2012
Development of MgZnO-grown MOCVD for UV Photonic applications
- Authors: Talla, Kharouna
- Date: 2011
- Subjects: Photoluminescence , Photonics , Zinc oxide
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10537 , http://hdl.handle.net/10948/d1012585 , Photoluminescence , Photonics , Zinc oxide
- Description: MgxZn1-xO has emerged as a material of great technological importance. Having a direct energy band gap that is tunable throughout much of the ultraviolet (UV) region of the spectrum from the near-UV (~370 nm) to the deep-UV (~176 nm), this compound is of interest for a variety of optoelectronic devices operating in this part of the electromagnetic spectrum. MgxZn1-xO offers advantages over the more mature compound semiconductor AlGaN which stem mainly from the unusually high exciton binding energy (60 meV in ZnO). In this study the growth of ZnO and MgxZn1-xO thin films using metal organic chemical vapour deposition (MOCVD) is systematically investigated. The films are mainly grown on c-Al2O3 and Si (100) and characterized using various techniques, such as photoluminescence (PL), x-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM) and auger electron spectroscopy (AES). The optical and the structural properties are essentially inspected in order to improve their quality. In this thesis the optimisation of ZnO grown using oxygen gas as a new oxidant in our reactor is investigated. The growth temperature and VI/II ratio are varied in order to find optimum parameters giving high quality layers. The effects of Si (100), Si (111), c- and r-sapphire, glass, GaAs and ZnO substrates on the optical, structural and morphological properties of ZnO thin films grown with tert-butanol (TBOH) is examined. Similar morphologies are observed for all substrates, with the films comprising hexagonal columns having cone shaped ends. The photoluminescence spectra are similar, but the various transitions have different relative intensities. It is clear that the different substrates influence neither the orientation of the films, nor the surface morphology, significantly. The photoluminescence hints at larger stacking fault densities in films grown on silicon and glass, however, as evidenced by stronger basal plane stacking fault-related luminescence at ~3.319 eV in the relevant low temperature photoluminescence spectra. The morphology changes with Mg incorporation, from hexagonal columnar structures to cubic faceted columns. From PL, the full with at half maximum is found to gradually increase with Mg content due to alloy broadening. The deep level emission (DLE) is observed to shift with Mg content. By changing the Mg content, the band gap of MgxZn1-xO film is tuned by ~450 meV, which provides an excellent opportunity for band gap engineering for optoelectronic applications. The c-lattice constant of ZnO (5.205 Å) decreases by only 0.6% when the Mg content reaches x=0.39. The introduction of Mg into ZnO is shown to increase the relative PL intensity of stacking fault-related transitions (at 3.314 eV for ZnO). This becomes the dominant near band edge emission. Using TEM a thin Mg rich layer is observed at the interface between the film and the Si or Al2O3. Temperature dependent PL measurements on layers with low Mg concentration (x=0.05 and 0.1) show that the main bound exciton peak exhibits an “s-shaped” temperature dependence, characteristic of localization in a disordered alloy. The origin of the PL line broadening of MgxZn1-xO (x≤0.04) is also analyzed with respect to alloy broadening, taking into account a random cation distribution and alloy clustering. The influence of various MOCVD growth parameters such as growth temperature and VI/II ratio is studied. Varying the temperature from 280 ˚C to 580 ˚C reveals strong morphological changes and optical degradation of the films. Low (<280 ˚C) and high (>580 ˚C) growth temperatures reduce the Mg incorporation. High VI/II ratios also decrease the Mg incorporation, as evidenced by the red-shift of the donor bound exciton (D°X) line. This is ascribed to a stronger premature reaction between (MeCp)2Mg and the oxidant or a preferential heterogeneous interaction between the Mg and oxygen species on the growth front. For both oxidizing agents (O2 and TBOH), the growth at 420 ˚C and a VI-II ratio of 60 on c-Al2O3 gave optimal quality layers in terms of their optical and structural quality. A comparison of films grown using TBOH and O2 gas as oxidizing agent shows no major difference in terms of Mg incorporation. The effect of annealing, the inclusion of a buffer layer and the influence of growth rate on the properties MgxZn1-xO thin films are also reported.
- Full Text:
- Date Issued: 2011
- Authors: Talla, Kharouna
- Date: 2011
- Subjects: Photoluminescence , Photonics , Zinc oxide
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10537 , http://hdl.handle.net/10948/d1012585 , Photoluminescence , Photonics , Zinc oxide
- Description: MgxZn1-xO has emerged as a material of great technological importance. Having a direct energy band gap that is tunable throughout much of the ultraviolet (UV) region of the spectrum from the near-UV (~370 nm) to the deep-UV (~176 nm), this compound is of interest for a variety of optoelectronic devices operating in this part of the electromagnetic spectrum. MgxZn1-xO offers advantages over the more mature compound semiconductor AlGaN which stem mainly from the unusually high exciton binding energy (60 meV in ZnO). In this study the growth of ZnO and MgxZn1-xO thin films using metal organic chemical vapour deposition (MOCVD) is systematically investigated. The films are mainly grown on c-Al2O3 and Si (100) and characterized using various techniques, such as photoluminescence (PL), x-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM) and auger electron spectroscopy (AES). The optical and the structural properties are essentially inspected in order to improve their quality. In this thesis the optimisation of ZnO grown using oxygen gas as a new oxidant in our reactor is investigated. The growth temperature and VI/II ratio are varied in order to find optimum parameters giving high quality layers. The effects of Si (100), Si (111), c- and r-sapphire, glass, GaAs and ZnO substrates on the optical, structural and morphological properties of ZnO thin films grown with tert-butanol (TBOH) is examined. Similar morphologies are observed for all substrates, with the films comprising hexagonal columns having cone shaped ends. The photoluminescence spectra are similar, but the various transitions have different relative intensities. It is clear that the different substrates influence neither the orientation of the films, nor the surface morphology, significantly. The photoluminescence hints at larger stacking fault densities in films grown on silicon and glass, however, as evidenced by stronger basal plane stacking fault-related luminescence at ~3.319 eV in the relevant low temperature photoluminescence spectra. The morphology changes with Mg incorporation, from hexagonal columnar structures to cubic faceted columns. From PL, the full with at half maximum is found to gradually increase with Mg content due to alloy broadening. The deep level emission (DLE) is observed to shift with Mg content. By changing the Mg content, the band gap of MgxZn1-xO film is tuned by ~450 meV, which provides an excellent opportunity for band gap engineering for optoelectronic applications. The c-lattice constant of ZnO (5.205 Å) decreases by only 0.6% when the Mg content reaches x=0.39. The introduction of Mg into ZnO is shown to increase the relative PL intensity of stacking fault-related transitions (at 3.314 eV for ZnO). This becomes the dominant near band edge emission. Using TEM a thin Mg rich layer is observed at the interface between the film and the Si or Al2O3. Temperature dependent PL measurements on layers with low Mg concentration (x=0.05 and 0.1) show that the main bound exciton peak exhibits an “s-shaped” temperature dependence, characteristic of localization in a disordered alloy. The origin of the PL line broadening of MgxZn1-xO (x≤0.04) is also analyzed with respect to alloy broadening, taking into account a random cation distribution and alloy clustering. The influence of various MOCVD growth parameters such as growth temperature and VI/II ratio is studied. Varying the temperature from 280 ˚C to 580 ˚C reveals strong morphological changes and optical degradation of the films. Low (<280 ˚C) and high (>580 ˚C) growth temperatures reduce the Mg incorporation. High VI/II ratios also decrease the Mg incorporation, as evidenced by the red-shift of the donor bound exciton (D°X) line. This is ascribed to a stronger premature reaction between (MeCp)2Mg and the oxidant or a preferential heterogeneous interaction between the Mg and oxygen species on the growth front. For both oxidizing agents (O2 and TBOH), the growth at 420 ˚C and a VI-II ratio of 60 on c-Al2O3 gave optimal quality layers in terms of their optical and structural quality. A comparison of films grown using TBOH and O2 gas as oxidizing agent shows no major difference in terms of Mg incorporation. The effect of annealing, the inclusion of a buffer layer and the influence of growth rate on the properties MgxZn1-xO thin films are also reported.
- Full Text:
- Date Issued: 2011
Repulsive-attractive models for the impact of two predators on prey species varying in anti-predator response
- Authors: Ddumba, Hassan
- Date: 2011
- Subjects: Predation (Biology) -- Mathematical models , Wildlife management -- Mathematical models , Pattern formation (Biology) , Predatory animals -- Ecology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10506 , http://hdl.handle.net/10948/d1010995 , Predation (Biology) -- Mathematical models , Wildlife management -- Mathematical models , Pattern formation (Biology) , Predatory animals -- Ecology
- Description: This study considers the dynamical interaction of two predatory carnivores (Lions (Panthera leo) and Spotted Hyaenas (Crocuta crocuta)) and three of their common prey (Buffalo (Syncerus caffer), Warthog (Phacochoerus africanus) and Kudu (Tragelaphus strepsiceros)). The dependence on spatial structure of species’ interaction stimulated the author to formulate reaction-diffusion models to explain the dynamics of predator-prey relationships in ecology. These models were used to predict and explain the effect of threshold populations, predator additional food and prey refuge on the general species’ dynamics. Vital parameters that model additional food to predators, prey refuge and population thresholds were given due attention in the analyses. The stability of a predator-prey model for an ecosystem faced with a prey out-flux which is analogous to and modelled as an Allee effect was investigated. The results highlight the bounds for the conversion efficiency of prey biomass to predator biomass (fertility gain) for which stability of the three species ecosystem model can be attained. Global stability analysis results showed that the prey (warthog) population density should exceed the sum of its carrying capacity and threshold value minus its equilibrium value i.e., W >(Kw + $) −W . This result shows that the warthog’s equilibrium population density is bounded above by population thresholds, i.e., W < (Kw+$). Besides showing the occurrence under parameter space of the so-called paradox of enrichment, early indicators of chaos can also be deduced. In addition, numerical results revealed stable oscillatory behaviour and stable spirals of the species as predator fertility rate, mortality rate and prey threshold were varied. The stabilising effect of prey refuge due to variations in predator fertility and proportion of prey in the refuge was studied. Formulation and analysis of a robust mathematical model for two predators having an overlapping dietary niche were also done. The Beddington-DeAngelis functional and numerical responses which are relevant in addressing the Principle of Competitive Exclusion as species interact were incorporated in the model. The stabilizing effect of additional food in relation to the relative diffusivity D, and wave number k, was investigated. Stability, dissipativity, permanence, persistence and periodicity of the model were studied using the routine and limit cycle perturbation methods. The periodic solutions (b 1 and b 3), which influence the dispersal rate (') of the interacting species, have been shown to be controlled by the wave number. For stability, and in order to overcome predator natural mortality, the nutritional value of predator additional food has been shown to be of high quality that can enhance predator fertility gain. The threshold relationships between various ecosystem parameters and the carrying capacity of the game park for the prey species were also deduced to ensure ecosystem persistence. Besides revealing irregular periodic travelling wave behaviour due to predator interference, numerical results also show oscillatory temporal dynamics resulting from additional food supplements combined with high predation rates.
- Full Text:
- Date Issued: 2011
- Authors: Ddumba, Hassan
- Date: 2011
- Subjects: Predation (Biology) -- Mathematical models , Wildlife management -- Mathematical models , Pattern formation (Biology) , Predatory animals -- Ecology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10506 , http://hdl.handle.net/10948/d1010995 , Predation (Biology) -- Mathematical models , Wildlife management -- Mathematical models , Pattern formation (Biology) , Predatory animals -- Ecology
- Description: This study considers the dynamical interaction of two predatory carnivores (Lions (Panthera leo) and Spotted Hyaenas (Crocuta crocuta)) and three of their common prey (Buffalo (Syncerus caffer), Warthog (Phacochoerus africanus) and Kudu (Tragelaphus strepsiceros)). The dependence on spatial structure of species’ interaction stimulated the author to formulate reaction-diffusion models to explain the dynamics of predator-prey relationships in ecology. These models were used to predict and explain the effect of threshold populations, predator additional food and prey refuge on the general species’ dynamics. Vital parameters that model additional food to predators, prey refuge and population thresholds were given due attention in the analyses. The stability of a predator-prey model for an ecosystem faced with a prey out-flux which is analogous to and modelled as an Allee effect was investigated. The results highlight the bounds for the conversion efficiency of prey biomass to predator biomass (fertility gain) for which stability of the three species ecosystem model can be attained. Global stability analysis results showed that the prey (warthog) population density should exceed the sum of its carrying capacity and threshold value minus its equilibrium value i.e., W >(Kw + $) −W . This result shows that the warthog’s equilibrium population density is bounded above by population thresholds, i.e., W < (Kw+$). Besides showing the occurrence under parameter space of the so-called paradox of enrichment, early indicators of chaos can also be deduced. In addition, numerical results revealed stable oscillatory behaviour and stable spirals of the species as predator fertility rate, mortality rate and prey threshold were varied. The stabilising effect of prey refuge due to variations in predator fertility and proportion of prey in the refuge was studied. Formulation and analysis of a robust mathematical model for two predators having an overlapping dietary niche were also done. The Beddington-DeAngelis functional and numerical responses which are relevant in addressing the Principle of Competitive Exclusion as species interact were incorporated in the model. The stabilizing effect of additional food in relation to the relative diffusivity D, and wave number k, was investigated. Stability, dissipativity, permanence, persistence and periodicity of the model were studied using the routine and limit cycle perturbation methods. The periodic solutions (b 1 and b 3), which influence the dispersal rate (') of the interacting species, have been shown to be controlled by the wave number. For stability, and in order to overcome predator natural mortality, the nutritional value of predator additional food has been shown to be of high quality that can enhance predator fertility gain. The threshold relationships between various ecosystem parameters and the carrying capacity of the game park for the prey species were also deduced to ensure ecosystem persistence. Besides revealing irregular periodic travelling wave behaviour due to predator interference, numerical results also show oscillatory temporal dynamics resulting from additional food supplements combined with high predation rates.
- Full Text:
- Date Issued: 2011
Aplousobranch ascidians (Tunicata: Ascidiacea) from Southern Africa
- Authors: Parker-Nance, Shirley
- Date: 2003
- Subjects: Sea squirts -- South Africa -- Classification , Aplousobranchia -- South Africa -- Classification
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:11078 , http://hdl.handle.net/10948/311 , Sea squirts -- South Africa -- Classification , Aplousobranchia -- South Africa -- Classification
- Description: The ascidian (subphylum Tunicata: class Ascidiacea) fauna along the southern African coast constitutes an important component of the sessile benthic reef fauna. Little is known of the species composition, biodiversity and distribution of ascidians on southern African intertidal and subtidal reefs. Past research on the ascidian fauna of South Africa was sporadic and limited, with only about one hundred and seventy species recorded during the last one hundred and twenty years. This is the first taxonomic study undertaken by a South African resident scientist. The study focused on six genera in four families (Euherdmaniidae, Polyclinidae, Pseudodistomidae and Didemnidae) belonging to the class Ascidiacea and suborder Aplousobranchia. Five species new to science, two Polyclinum, two Pseudodistoma and one Polysyncraton species are described. New additional information on the distribution of five species previously known to science, including one recorded for the first time along the South African coast, is presented. A literature review and comparison of the taxonomic important characteristics is made of all species known globally for the six genera. These six genera comprise twelve Euherdmania, fifteen Aplidiopsis, forty Polyclinum thirty-one Pseudodistoma, six Atriolum and sixty-eight Polysyncraton species.
- Full Text:
- Date Issued: 2003
- Authors: Parker-Nance, Shirley
- Date: 2003
- Subjects: Sea squirts -- South Africa -- Classification , Aplousobranchia -- South Africa -- Classification
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:11078 , http://hdl.handle.net/10948/311 , Sea squirts -- South Africa -- Classification , Aplousobranchia -- South Africa -- Classification
- Description: The ascidian (subphylum Tunicata: class Ascidiacea) fauna along the southern African coast constitutes an important component of the sessile benthic reef fauna. Little is known of the species composition, biodiversity and distribution of ascidians on southern African intertidal and subtidal reefs. Past research on the ascidian fauna of South Africa was sporadic and limited, with only about one hundred and seventy species recorded during the last one hundred and twenty years. This is the first taxonomic study undertaken by a South African resident scientist. The study focused on six genera in four families (Euherdmaniidae, Polyclinidae, Pseudodistomidae and Didemnidae) belonging to the class Ascidiacea and suborder Aplousobranchia. Five species new to science, two Polyclinum, two Pseudodistoma and one Polysyncraton species are described. New additional information on the distribution of five species previously known to science, including one recorded for the first time along the South African coast, is presented. A literature review and comparison of the taxonomic important characteristics is made of all species known globally for the six genera. These six genera comprise twelve Euherdmania, fifteen Aplidiopsis, forty Polyclinum thirty-one Pseudodistoma, six Atriolum and sixty-eight Polysyncraton species.
- Full Text:
- Date Issued: 2003
Towards social impact assessment of copper-nickel mining in Botswana
- Authors: Mengwe, Moses Seargent
- Date: 2010
- Subjects: Copper mines and mining -- Environmental aspects -- Botswana , Nickel mines and mining -- Environmental aspects -- Botswana , Mineral industry -- Botswana , Mines and mineral resources -- Botswana
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10644 , http://hdl.handle.net/10948/1443 , Copper mines and mining -- Environmental aspects -- Botswana , Nickel mines and mining -- Environmental aspects -- Botswana , Mineral industry -- Botswana , Mines and mineral resources -- Botswana
- Description: This research study is more of an initiative towards Social Impact Assessment of copper-nickel mining in Botswana. The specific objectives of the study were centred on the assessment of the social impacts of copper-nickel mining in Botswana from the initial mining stage of exploration, surveying and mine site development to mine closure. The study was carried out under the broad hypotheses that mining influences population movement that impact on areas of mining; mining activities have both economic benefits and deleterious social impacts on the local communities found in the areas where mining is taking place; and mine closure has far reaching socio-economic, investment and developmental implications over and above the obvious interests of project owners. To achieve the broad aim as summarised above, the research study used a multi-disciplinary methodology and approach that required several kinds of expertise and sources of information. Hence it used both primary and secondary sources centred on interactive informative interviews, site visits and observations, questionnaires, census data records, mining companies’ publications, published textbooks and journal articles. The research study comprised of three different mines operated by three different mining companies in three varied socio-cultural and ethnic regions of Botswana. First was a detailed Social Impact Assessment of the initial phase of exploration, surveying and mine site development represented by Mowana mine project operated by African Copper in the rural areas of Dugwi and Mosetse. This case study yielded results showing that the social impacts of mining in the area are diverse and extensive. The findings suggest that the impacts relate not only to the possible economic benefits of foreign exchange, employment, the optimal use of available mineral resources and the possible development of Dugwi and Mosetse villages, but extends to the deleterious social impacts. The results also indicated that the social impacts have just begun in the two communities. Hence they point towards a possible disruption within the socio-cultural system of the local people if serious mitigation measures are not put in place; thus suggesting that the early stages of exploration and mine site development results in the most conflict between the mine and the local people. Second was a comprehensive Social Impact Assessment of Tati-Nickel Phoenix mining project in the peri-urban areas of Matshelagabedi and Matsiloje areas representing the mining stage of mine production and expansion. The results from this case study suggest that during vi mine production and expansion, many people were relocated. However, the overriding impression gained from the case study was Tati-Nickel Mining Company’s elaborate corporate policies that suggested good corporate governance and best practices that promote sustainable development. A notable milestone on good corporate governance and best practice that the other two case studies (mining company) could benchmark on is Tati-Nickel’s corporate social responsibility programme that has been designed to ensure that the communities within a fifty kilometre mine radius benefit from the mine. The results from the case study also distinguished the mining stage of production and expansion from the other two because it is associated with the deep entrenchment of the social impacts into the communities near to mining areas. Third was a detailed Social Impact Assessment on Bamangwato Concession Limited mine in the industrial town of Selebi-Phikwe. The case study represented the stage of mine closure. Through the findings of this case study, it became apparent that the economic dependence of Selebi-Phikwe on mining has seen the town developing into a mining town, increasing its vulnerability at mine closure. The results from the case study further suggest that mine closure will degrade the socio-economic sector of the town with ever far reaching socio-economic implications as many people lose their gainful employment, hence suggesting that a possible complete mine closure will be the most traumatic phase leading to major social conflict within the area. Thus the results suggest that at mine closure, the deleterious social impacts will overspill to other areas in Botswana with disastrous effects for the economy of the country. The results yielded through this study established in clear and passionate language that copper-nickel mining in Botswana influences population movements that lead to positive and negative impacts on the communities found in mining areas. Another major finding of the study is that copper-nickel mining activities have both economic benefits and deleterious social impacts on the local communities, hence the recommendation that the copper-nickel mining companies should embrace the concept of sustainable mining for sustainable development to avoid most of the negative impacts of their operations on the local communities.
- Full Text:
- Date Issued: 2010
- Authors: Mengwe, Moses Seargent
- Date: 2010
- Subjects: Copper mines and mining -- Environmental aspects -- Botswana , Nickel mines and mining -- Environmental aspects -- Botswana , Mineral industry -- Botswana , Mines and mineral resources -- Botswana
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10644 , http://hdl.handle.net/10948/1443 , Copper mines and mining -- Environmental aspects -- Botswana , Nickel mines and mining -- Environmental aspects -- Botswana , Mineral industry -- Botswana , Mines and mineral resources -- Botswana
- Description: This research study is more of an initiative towards Social Impact Assessment of copper-nickel mining in Botswana. The specific objectives of the study were centred on the assessment of the social impacts of copper-nickel mining in Botswana from the initial mining stage of exploration, surveying and mine site development to mine closure. The study was carried out under the broad hypotheses that mining influences population movement that impact on areas of mining; mining activities have both economic benefits and deleterious social impacts on the local communities found in the areas where mining is taking place; and mine closure has far reaching socio-economic, investment and developmental implications over and above the obvious interests of project owners. To achieve the broad aim as summarised above, the research study used a multi-disciplinary methodology and approach that required several kinds of expertise and sources of information. Hence it used both primary and secondary sources centred on interactive informative interviews, site visits and observations, questionnaires, census data records, mining companies’ publications, published textbooks and journal articles. The research study comprised of three different mines operated by three different mining companies in three varied socio-cultural and ethnic regions of Botswana. First was a detailed Social Impact Assessment of the initial phase of exploration, surveying and mine site development represented by Mowana mine project operated by African Copper in the rural areas of Dugwi and Mosetse. This case study yielded results showing that the social impacts of mining in the area are diverse and extensive. The findings suggest that the impacts relate not only to the possible economic benefits of foreign exchange, employment, the optimal use of available mineral resources and the possible development of Dugwi and Mosetse villages, but extends to the deleterious social impacts. The results also indicated that the social impacts have just begun in the two communities. Hence they point towards a possible disruption within the socio-cultural system of the local people if serious mitigation measures are not put in place; thus suggesting that the early stages of exploration and mine site development results in the most conflict between the mine and the local people. Second was a comprehensive Social Impact Assessment of Tati-Nickel Phoenix mining project in the peri-urban areas of Matshelagabedi and Matsiloje areas representing the mining stage of mine production and expansion. The results from this case study suggest that during vi mine production and expansion, many people were relocated. However, the overriding impression gained from the case study was Tati-Nickel Mining Company’s elaborate corporate policies that suggested good corporate governance and best practices that promote sustainable development. A notable milestone on good corporate governance and best practice that the other two case studies (mining company) could benchmark on is Tati-Nickel’s corporate social responsibility programme that has been designed to ensure that the communities within a fifty kilometre mine radius benefit from the mine. The results from the case study also distinguished the mining stage of production and expansion from the other two because it is associated with the deep entrenchment of the social impacts into the communities near to mining areas. Third was a detailed Social Impact Assessment on Bamangwato Concession Limited mine in the industrial town of Selebi-Phikwe. The case study represented the stage of mine closure. Through the findings of this case study, it became apparent that the economic dependence of Selebi-Phikwe on mining has seen the town developing into a mining town, increasing its vulnerability at mine closure. The results from the case study further suggest that mine closure will degrade the socio-economic sector of the town with ever far reaching socio-economic implications as many people lose their gainful employment, hence suggesting that a possible complete mine closure will be the most traumatic phase leading to major social conflict within the area. Thus the results suggest that at mine closure, the deleterious social impacts will overspill to other areas in Botswana with disastrous effects for the economy of the country. The results yielded through this study established in clear and passionate language that copper-nickel mining in Botswana influences population movements that lead to positive and negative impacts on the communities found in mining areas. Another major finding of the study is that copper-nickel mining activities have both economic benefits and deleterious social impacts on the local communities, hence the recommendation that the copper-nickel mining companies should embrace the concept of sustainable mining for sustainable development to avoid most of the negative impacts of their operations on the local communities.
- Full Text:
- Date Issued: 2010
A methodology to institutionalise user experience in a South African provincial government
- Authors: Pretorius, Marco Cobus
- Date: 2012
- Subjects: Human-computer interaction , User interfaces (Computer systems) , Government Web sites -- South Africa , Web site development , Electronic government information
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10489 , http://hdl.handle.net/10948/d1019961
- Description: The number of citizens, who access e-Government websites, is growing significantly and their expectations for additional services are increasing. The Internet has become an essential instrument to distribute information to citizens. Poorly designed websites, however, can divide governments and its citizens. Consensus amongst researchers is that user experience (UX) is an important factor in designing websites specifically e-Government websites. Problems, experienced with website usability, prevent people from accessing and eventually adopting technology, such as e-Government. Countries, such as the United States, United Kingdom and Canada, have shown increased support for UX in e-Government websites. At present, a number of guidelines and design principles exists for e-Government website UX design; however, the effectiveness of the implementation of these guidelines and principles depends on the profiles of the individuals on a website development team and on an organisation’s understanding of UX. Despite the highlighted importance of UX, guidelines and principles are rarely adopted in South African e-Government websites. Usability and UX guidelines cannot be implemented; if there is no executive support; an inadequately trained staff; no routine UX practice; insufficient budget; inefficient use of usability methodologies and user-centred design (UCD) processes. The challenge at present in the UX design field is the institutionalisation of UX, specifically at government level. The goal of this research was to propose and evaluate a methodology to institutionalise UX in South African Provincial Governments (PGs), named the “Institutionalise UX in Government (IUXG) methodology”. The research used the Western Cape Government (WCG) in South Africa as a case study to evaluate the proposed methodology to institutionalise UX in a South African PG. The IUXG methodology (1.0) was proposed from five UX methodologies, as well as from best practices found in literature. The IUXG methodology (1.1) was updated, based on results of a survey to South African PGs, a survey to WCG employees, as well as literature from the WCG. The IUXG methodology (2.0) was updated a final time, based on the case study results and on a confirmation survey with WCG employees after the implementation of the case study. The research study made use of three surveys during this research. The first survey, incorporating UX maturity models, confirmed that understanding and buy-in of UX are limited and that UX maturity levels are low at South African PG level. The second and third surveys were administered to WCG e-Government website officials before and after the implementation of the IUXG methodology. The surveys measured the UX maturity level of the WCG in the component, e-Government for Citizens (e-G4C), responsible for the WCG e-Government website. The final survey results demonstrated that, after the implementation of the IUXG methodology, the WCG improved its level of UX maturity on the identified UX maturity models. Implementation of the IUXG methodology institutionalised UX in the WCG. UX activities became standard practice in the e-Government website environment after the systems development lifecycle (SDLC) incorporated UCD. UX policy, strategy and guidelines were documented for the WCG e-Government website. The WCG constructed the first usability testing facility for a South African PG and improvements to the WCG e-Government website were implemented. The proposed IUXG methodology institutionalised UX in the WCG e-Government website environment. This research is a major contribution, to addressing the current lack of UX practices in South African PGs. South African PGs can use the proposed IUXG methodology to institutionalise UX and it will assist PG officials to develop increased UX maturity levels. The advantage of the IUXG methodology is that it provides PG officials with a step-by-step method how to institutionalise UX in a PG by following the six phases of the IUXG methodology: startup, setup, organisation, method, standards and long-term. The IUXG methodology will assist South African PGs to establish UX practice as a norm. The IUXG methodology will assist PGs with the resources, methods and tools to enable them to implement UX guidelines, which will result in an improved, more usable and more user-centric PG e-Government website.
- Full Text:
- Date Issued: 2012
- Authors: Pretorius, Marco Cobus
- Date: 2012
- Subjects: Human-computer interaction , User interfaces (Computer systems) , Government Web sites -- South Africa , Web site development , Electronic government information
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10489 , http://hdl.handle.net/10948/d1019961
- Description: The number of citizens, who access e-Government websites, is growing significantly and their expectations for additional services are increasing. The Internet has become an essential instrument to distribute information to citizens. Poorly designed websites, however, can divide governments and its citizens. Consensus amongst researchers is that user experience (UX) is an important factor in designing websites specifically e-Government websites. Problems, experienced with website usability, prevent people from accessing and eventually adopting technology, such as e-Government. Countries, such as the United States, United Kingdom and Canada, have shown increased support for UX in e-Government websites. At present, a number of guidelines and design principles exists for e-Government website UX design; however, the effectiveness of the implementation of these guidelines and principles depends on the profiles of the individuals on a website development team and on an organisation’s understanding of UX. Despite the highlighted importance of UX, guidelines and principles are rarely adopted in South African e-Government websites. Usability and UX guidelines cannot be implemented; if there is no executive support; an inadequately trained staff; no routine UX practice; insufficient budget; inefficient use of usability methodologies and user-centred design (UCD) processes. The challenge at present in the UX design field is the institutionalisation of UX, specifically at government level. The goal of this research was to propose and evaluate a methodology to institutionalise UX in South African Provincial Governments (PGs), named the “Institutionalise UX in Government (IUXG) methodology”. The research used the Western Cape Government (WCG) in South Africa as a case study to evaluate the proposed methodology to institutionalise UX in a South African PG. The IUXG methodology (1.0) was proposed from five UX methodologies, as well as from best practices found in literature. The IUXG methodology (1.1) was updated, based on results of a survey to South African PGs, a survey to WCG employees, as well as literature from the WCG. The IUXG methodology (2.0) was updated a final time, based on the case study results and on a confirmation survey with WCG employees after the implementation of the case study. The research study made use of three surveys during this research. The first survey, incorporating UX maturity models, confirmed that understanding and buy-in of UX are limited and that UX maturity levels are low at South African PG level. The second and third surveys were administered to WCG e-Government website officials before and after the implementation of the IUXG methodology. The surveys measured the UX maturity level of the WCG in the component, e-Government for Citizens (e-G4C), responsible for the WCG e-Government website. The final survey results demonstrated that, after the implementation of the IUXG methodology, the WCG improved its level of UX maturity on the identified UX maturity models. Implementation of the IUXG methodology institutionalised UX in the WCG. UX activities became standard practice in the e-Government website environment after the systems development lifecycle (SDLC) incorporated UCD. UX policy, strategy and guidelines were documented for the WCG e-Government website. The WCG constructed the first usability testing facility for a South African PG and improvements to the WCG e-Government website were implemented. The proposed IUXG methodology institutionalised UX in the WCG e-Government website environment. This research is a major contribution, to addressing the current lack of UX practices in South African PGs. South African PGs can use the proposed IUXG methodology to institutionalise UX and it will assist PG officials to develop increased UX maturity levels. The advantage of the IUXG methodology is that it provides PG officials with a step-by-step method how to institutionalise UX in a PG by following the six phases of the IUXG methodology: startup, setup, organisation, method, standards and long-term. The IUXG methodology will assist South African PGs to establish UX practice as a norm. The IUXG methodology will assist PGs with the resources, methods and tools to enable them to implement UX guidelines, which will result in an improved, more usable and more user-centric PG e-Government website.
- Full Text:
- Date Issued: 2012
Designing adaptaptive user interfaces for enterprise resource planning systems for small enterprises
- Authors: Singh, Akash
- Subjects: User interfaces (Computer systems)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10458 , http://hdl.handle.net/10948/2073 , User interfaces (Computer systems)
- Description: It is widely acknowledged that enterprise resource planning (ERP) systems suffer from complex user interfaces. The complexity of these user interfaces negatively affects the usability of these systems. Current research has shown that a need exists to improve the overall usability of ERP systems. This research proposes the use of adaptive user interfaces (AUIs) as a means of improving the overall usability of ERP systems. Research has shown that AUIs are capable of improving system usability by reducing user interface complexity and improving the overall user experience. The primary objective of this research was to determine how AUIs could be designed to improve the usability of ERP systems. An adaptation taxonomy, ERP system architecture (incorporating an AUI), a set of AUI components and a set of usability heuristics for ERP systems were proposed to support the design, development and evaluation of AUIs for ERP systems. The proposed adaptation taxonomy provides support for three types of adaptation: content adaptation, presentation adaptation and navigation adaptation. The proposed ERP system architecture is a three-tiered system architecture, consisting of a Presentation Layer (incorporating an AUI), an Application Layer and a Database Layer. The proposed set of AUI components comprise a user model, a task model and a dialog model. The set of proposed usability heuristics aims to identify usability issues of ERP systems within the areas of Navigation, Presentation, Task Support, Learnability and Customisation. An AUI prototype was developed based on selected adaptive techniques from the proposed adaptation taxonomy and selected components from the proposed system architecture. All of the proposed AUI components were implemented. The AUI prototype was developed for an existing ERP system, namely SAP Business One (SBO). This prototype was designed, in order to resolve the usability issues of SBO identified through the use of the proposed set of heuristics. The development of the AUI prototype was made possible through the use of a software development kit (SDK) provided with SBO. The AUI prototype made use of content adaptation, presentation adaptation and navigation adaptation in order to address the identified usability issues. An empirical evaluation was conducted on the AUI prototype to determine whether it provided any usability benefits over the standard SBO system. The results from the empirical evaluation revealed that the AUI presented usability benefits with regard to learnability and satisfaction. Users who used the AUI prototype were able to learn how to use the ERP system a lot quicker and were more satisfied than users of the standard SBO system. The successful implementation of the AUI prototype provided practical evidence that the proposed adaptation taxonomy and the proposed system architecture can be implemented. This research has provided empirical evidence that the use of AUIs can improve the usability of ERP systems. Future research has outlined several possibilities to utilise and enhance the proposed adaptation taxonomy, the ERP system architecture and ERP heuristics, for the purpose of furthering research within the area of AUIs for ERP systems.
- Full Text:
Designing adaptaptive user interfaces for enterprise resource planning systems for small enterprises
- Authors: Singh, Akash
- Subjects: User interfaces (Computer systems)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10458 , http://hdl.handle.net/10948/2073 , User interfaces (Computer systems)
- Description: It is widely acknowledged that enterprise resource planning (ERP) systems suffer from complex user interfaces. The complexity of these user interfaces negatively affects the usability of these systems. Current research has shown that a need exists to improve the overall usability of ERP systems. This research proposes the use of adaptive user interfaces (AUIs) as a means of improving the overall usability of ERP systems. Research has shown that AUIs are capable of improving system usability by reducing user interface complexity and improving the overall user experience. The primary objective of this research was to determine how AUIs could be designed to improve the usability of ERP systems. An adaptation taxonomy, ERP system architecture (incorporating an AUI), a set of AUI components and a set of usability heuristics for ERP systems were proposed to support the design, development and evaluation of AUIs for ERP systems. The proposed adaptation taxonomy provides support for three types of adaptation: content adaptation, presentation adaptation and navigation adaptation. The proposed ERP system architecture is a three-tiered system architecture, consisting of a Presentation Layer (incorporating an AUI), an Application Layer and a Database Layer. The proposed set of AUI components comprise a user model, a task model and a dialog model. The set of proposed usability heuristics aims to identify usability issues of ERP systems within the areas of Navigation, Presentation, Task Support, Learnability and Customisation. An AUI prototype was developed based on selected adaptive techniques from the proposed adaptation taxonomy and selected components from the proposed system architecture. All of the proposed AUI components were implemented. The AUI prototype was developed for an existing ERP system, namely SAP Business One (SBO). This prototype was designed, in order to resolve the usability issues of SBO identified through the use of the proposed set of heuristics. The development of the AUI prototype was made possible through the use of a software development kit (SDK) provided with SBO. The AUI prototype made use of content adaptation, presentation adaptation and navigation adaptation in order to address the identified usability issues. An empirical evaluation was conducted on the AUI prototype to determine whether it provided any usability benefits over the standard SBO system. The results from the empirical evaluation revealed that the AUI presented usability benefits with regard to learnability and satisfaction. Users who used the AUI prototype were able to learn how to use the ERP system a lot quicker and were more satisfied than users of the standard SBO system. The successful implementation of the AUI prototype provided practical evidence that the proposed adaptation taxonomy and the proposed system architecture can be implemented. This research has provided empirical evidence that the use of AUIs can improve the usability of ERP systems. Future research has outlined several possibilities to utilise and enhance the proposed adaptation taxonomy, the ERP system architecture and ERP heuristics, for the purpose of furthering research within the area of AUIs for ERP systems.
- Full Text:
Rhenium complexes with multidentate imine-, amine-, thione-, thiol-, hydroxy- and carboxamide chelates
- Authors: Habarurema, Gratien
- Date: 2016
- Subjects: Rhenium Metal complexes
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/12679 , vital:27106
- Description: This study entails the synthesis, spectroscopic and structural characterization of new rhenium complexes with multidentate imine-, amine-, thione-, thiol-, hydroxy- and carboxamide chelates in various oxidation states. Rhenium(I) and (V) complexes with imidazolidine, pyrimidine and bridging pyridyl derivatives are reported in Chapter 3. The reactions of the potential tridentate N,N,Odonor ligand 2,2'-dipyridylketone (dpk) with trans-[ReOCl3(PPh3)2], (n-Bu4N)[ReOCl4] and trans-[ReOI2(OEt)(PPh3)2] led to the isolation of cis-[ReOCl2(edpm)], cis-[ReOCl2(dpk.OH)] and [ReO3(dpk.OH)] respectively (see Scheme 1). The reaction of (E)-N-((pyridine-2-yl)methylene)benzo[d]thiazol-2-amine (pbt) with trans- [ReOCl3(PPh3)2] produced a mononuclear oxorhenium(V) complex cis- [ReOCl2(epm)(PPh3)]. Both dpk and pbt exhibited a nucleophilic attack by acetonitrile (for Hedpm), water (for dpk) and ethanol (for pbt) leading to chelates that act as uninegative tridentate N,N,O- and bidentate N,O-donor chelates respectively. The reaction of [Re(CO)5Cl] with 2,3-dihydro-2,2-di(pyridin-2-yl)-1H-benzo[d]imidazole (H2dpb), (2,6-diaza-cyclohex-1-enylolonium)2-aza-benzoate (H2den) and 2-(2-(pyridine-2-yl)imidazolidin-2-yl)pyridine (H2pip) (see Scheme 1) gave rise to novel rhenium(I) complexes fac-[Re(CO)3(H2dmb)Cl], fac-[Re(CO)3(Hhdm)] and fac-[Re(CO)3(H2pip)]Cl respectively. The monomeric cationic salt fac-[Re(CO)3(H2salbam)]Br and ligand-bridged dimer fac- (μ-H2salet)[Re(CO)3]2 complexes were formed by the reactions of [Re(CO)5X] (X = Br or Cl) with the potentially heptadentate Schiff base 2,2,2-tris (salicylideneimino)- triethylamine (H3salet; Scheme 2) respectively. The reactions of the potentially hexadentate ligands acting as tridentate monoanionic N,N,O- or N,O,O-donor chelates N1-(3-(2-hydroxy enzylideneamino) propylamino) ethyl)benzylidenepropane-1,3-diamine (H2salpd) and N,N -bis(salicylidene) -3,6-dioxa-1,8-diaminooctane (H2saldane) (Scheme 2) with [Re(CO)5Cl] led to the isolation of the mononuclear and dinuclear complexes fac-[Re(CO)3(Hsaldane)] and fac-(μ-salpd)[Re(CO)3]2 respectively. The reactions of [Re(CO)5Cl] with the tetradentate ligands 2-{[2-hydroxy-3-{[(E)-(2- hydroxyphenyl)-methylidene]amino}propyl)imino]methyl}phenol (H2hmp), 6-((6E)- ((3E)-3-((oxocyclohexa-2,4-dienyl)methyleneamino)-2-hydroxypropylimino)methyl)- cyclohexa-2,4-dienone (H2hcd.H2O) zwitterion and 2-((1E)-1-((E)-3-(2-hydoxyphenylmethylideneamino)propylimino)methyl)phenol (H2hdp) (see Scheme 2) resulted in the formation of the neutral fac-[Re(CO)3(Hamp)], fac-[Re(CO)3(Hhetp)] and fac- [Re(CO)3(Happ)] respectively. The treatment of 2-((3-(2-hydroxybenzylamino)-propylamino)methyl)phenol (H2hbp) with [Re(CO)3Cl] and trans-[ReOCl3(PPh3)2] gave the fac-[Re(CO)3(Hhbp)] and (μ-O)[ReO(hbp)]2 complexes. The reactions of the ligands H2hmp, H2hdp and H2hap (see Scheme 2) with trans-[ReOBr3(PPh3)2] and trans-[ReOI2(OEt)(PPh3)2] produced dinuclear oxo-bridged rhenium(V) complexes (μ-O)[ReO(hmp)]2, [(μ-O)[ReO(hdp)]2 and (μ-O)[ReO(hap)]2 respectively. The neutral and anionic binding modes of thiosemicarbazones to the fac-[Re(CO)3]+, cis- [ReO2]+ and trans-[ReO2]+ cores have been investigated in Chapter 6. The reactions of the potentially tridentate ligand 1-{1-(2- hydroxyphenyl)ethylidene}-4- phenylthiosemicarbazide (H2hpt) (see Scheme 3) with [Re(CO)5Cl], cis-[ReO2I(PPh3)2]cand trans-[ReO2(py)4]Cl led to the isolation of the complexes fac-[Re(CO)3(H2hpt)2]Cl, [Re(hipt)(Hipht)(PPh3)] and trans-[ReO(hpt)(Hhpt)] respectively. The X-ray crystal analysis of the complexes show that the ligand H2hpt exhibits decomposition, thiol-enol tautomerism and a thiolate-iminium zwitterionic process, and coordinates in the neutral form via its thione sulfur and nitrogen and anionic through the azo nitrogen, thiolate sulfur and acetophenolic oxygen. A series of nitrogen-heterocyclic amide-, acid-, thiol- and diol-based ligands as well as their related monomeric rhenium(III) and (V) complexes have also been studied (see Chapter 7). The reaction of N-(2-(pyrazine-2-carboxamido)phenyl)pyrazine-2- carboxamide (H2ppc) (Scheme 3) with trans-[ReOBr3(PPh3)2] yielded the complex trans- [ReBr2(Hppca)(PPh3)2]. The reactions of trans-[ReOX3(PPh3)2] (X = Cl, Br) with pyridine-2,6-dicarboxylic acid (H2pda) produced the neutral oxorhenium(V) complexes [ReOX2(epca)(PPh3)]. The treatment of trans-[ReOBr3(PPh3)2] with 2-mercaptopyridine- 3-carboxylic acid (H2mpc) gave rise to the rhenium(III) complex [Re(empc)3(PPh3)]. The reaction of 2,6-bis(hydroxymethyl)pyridine (H2bhp) with trans-[ReOI2(EOt)(PPh3)2], trans-[ReOBr3(PPh3)2] and [Re(CO)5Cl] gave the complexes [ReO(Hbhp)2(PPh3)]I.PPh3, cis-[ReOBr2(Hbhp)(PPh3)] and fac-(μ- O)2[Re(CO)3(Hbhp)]2 respectively. Their X-ray crystal structures indicate that the ligand acts as a bidentate monoanionic N,O-donor chelate leaving a free aliphatic hydroxyl group.
- Full Text:
- Date Issued: 2016
- Authors: Habarurema, Gratien
- Date: 2016
- Subjects: Rhenium Metal complexes
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/12679 , vital:27106
- Description: This study entails the synthesis, spectroscopic and structural characterization of new rhenium complexes with multidentate imine-, amine-, thione-, thiol-, hydroxy- and carboxamide chelates in various oxidation states. Rhenium(I) and (V) complexes with imidazolidine, pyrimidine and bridging pyridyl derivatives are reported in Chapter 3. The reactions of the potential tridentate N,N,Odonor ligand 2,2'-dipyridylketone (dpk) with trans-[ReOCl3(PPh3)2], (n-Bu4N)[ReOCl4] and trans-[ReOI2(OEt)(PPh3)2] led to the isolation of cis-[ReOCl2(edpm)], cis-[ReOCl2(dpk.OH)] and [ReO3(dpk.OH)] respectively (see Scheme 1). The reaction of (E)-N-((pyridine-2-yl)methylene)benzo[d]thiazol-2-amine (pbt) with trans- [ReOCl3(PPh3)2] produced a mononuclear oxorhenium(V) complex cis- [ReOCl2(epm)(PPh3)]. Both dpk and pbt exhibited a nucleophilic attack by acetonitrile (for Hedpm), water (for dpk) and ethanol (for pbt) leading to chelates that act as uninegative tridentate N,N,O- and bidentate N,O-donor chelates respectively. The reaction of [Re(CO)5Cl] with 2,3-dihydro-2,2-di(pyridin-2-yl)-1H-benzo[d]imidazole (H2dpb), (2,6-diaza-cyclohex-1-enylolonium)2-aza-benzoate (H2den) and 2-(2-(pyridine-2-yl)imidazolidin-2-yl)pyridine (H2pip) (see Scheme 1) gave rise to novel rhenium(I) complexes fac-[Re(CO)3(H2dmb)Cl], fac-[Re(CO)3(Hhdm)] and fac-[Re(CO)3(H2pip)]Cl respectively. The monomeric cationic salt fac-[Re(CO)3(H2salbam)]Br and ligand-bridged dimer fac- (μ-H2salet)[Re(CO)3]2 complexes were formed by the reactions of [Re(CO)5X] (X = Br or Cl) with the potentially heptadentate Schiff base 2,2,2-tris (salicylideneimino)- triethylamine (H3salet; Scheme 2) respectively. The reactions of the potentially hexadentate ligands acting as tridentate monoanionic N,N,O- or N,O,O-donor chelates N1-(3-(2-hydroxy enzylideneamino) propylamino) ethyl)benzylidenepropane-1,3-diamine (H2salpd) and N,N -bis(salicylidene) -3,6-dioxa-1,8-diaminooctane (H2saldane) (Scheme 2) with [Re(CO)5Cl] led to the isolation of the mononuclear and dinuclear complexes fac-[Re(CO)3(Hsaldane)] and fac-(μ-salpd)[Re(CO)3]2 respectively. The reactions of [Re(CO)5Cl] with the tetradentate ligands 2-{[2-hydroxy-3-{[(E)-(2- hydroxyphenyl)-methylidene]amino}propyl)imino]methyl}phenol (H2hmp), 6-((6E)- ((3E)-3-((oxocyclohexa-2,4-dienyl)methyleneamino)-2-hydroxypropylimino)methyl)- cyclohexa-2,4-dienone (H2hcd.H2O) zwitterion and 2-((1E)-1-((E)-3-(2-hydoxyphenylmethylideneamino)propylimino)methyl)phenol (H2hdp) (see Scheme 2) resulted in the formation of the neutral fac-[Re(CO)3(Hamp)], fac-[Re(CO)3(Hhetp)] and fac- [Re(CO)3(Happ)] respectively. The treatment of 2-((3-(2-hydroxybenzylamino)-propylamino)methyl)phenol (H2hbp) with [Re(CO)3Cl] and trans-[ReOCl3(PPh3)2] gave the fac-[Re(CO)3(Hhbp)] and (μ-O)[ReO(hbp)]2 complexes. The reactions of the ligands H2hmp, H2hdp and H2hap (see Scheme 2) with trans-[ReOBr3(PPh3)2] and trans-[ReOI2(OEt)(PPh3)2] produced dinuclear oxo-bridged rhenium(V) complexes (μ-O)[ReO(hmp)]2, [(μ-O)[ReO(hdp)]2 and (μ-O)[ReO(hap)]2 respectively. The neutral and anionic binding modes of thiosemicarbazones to the fac-[Re(CO)3]+, cis- [ReO2]+ and trans-[ReO2]+ cores have been investigated in Chapter 6. The reactions of the potentially tridentate ligand 1-{1-(2- hydroxyphenyl)ethylidene}-4- phenylthiosemicarbazide (H2hpt) (see Scheme 3) with [Re(CO)5Cl], cis-[ReO2I(PPh3)2]cand trans-[ReO2(py)4]Cl led to the isolation of the complexes fac-[Re(CO)3(H2hpt)2]Cl, [Re(hipt)(Hipht)(PPh3)] and trans-[ReO(hpt)(Hhpt)] respectively. The X-ray crystal analysis of the complexes show that the ligand H2hpt exhibits decomposition, thiol-enol tautomerism and a thiolate-iminium zwitterionic process, and coordinates in the neutral form via its thione sulfur and nitrogen and anionic through the azo nitrogen, thiolate sulfur and acetophenolic oxygen. A series of nitrogen-heterocyclic amide-, acid-, thiol- and diol-based ligands as well as their related monomeric rhenium(III) and (V) complexes have also been studied (see Chapter 7). The reaction of N-(2-(pyrazine-2-carboxamido)phenyl)pyrazine-2- carboxamide (H2ppc) (Scheme 3) with trans-[ReOBr3(PPh3)2] yielded the complex trans- [ReBr2(Hppca)(PPh3)2]. The reactions of trans-[ReOX3(PPh3)2] (X = Cl, Br) with pyridine-2,6-dicarboxylic acid (H2pda) produced the neutral oxorhenium(V) complexes [ReOX2(epca)(PPh3)]. The treatment of trans-[ReOBr3(PPh3)2] with 2-mercaptopyridine- 3-carboxylic acid (H2mpc) gave rise to the rhenium(III) complex [Re(empc)3(PPh3)]. The reaction of 2,6-bis(hydroxymethyl)pyridine (H2bhp) with trans-[ReOI2(EOt)(PPh3)2], trans-[ReOBr3(PPh3)2] and [Re(CO)5Cl] gave the complexes [ReO(Hbhp)2(PPh3)]I.PPh3, cis-[ReOBr2(Hbhp)(PPh3)] and fac-(μ- O)2[Re(CO)3(Hbhp)]2 respectively. Their X-ray crystal structures indicate that the ligand acts as a bidentate monoanionic N,O-donor chelate leaving a free aliphatic hydroxyl group.
- Full Text:
- Date Issued: 2016
Atmospheric pressure metal-organic vapour phase epitaxial growth of InAs/GaSb strained layer superlattices
- Authors: Miya, Senzo Simo
- Date: 2013
- Subjects: Gallium arsenide semiconductors , Organometallic compounds , Compound semiconductors , Metal organic chemical vapor deposition , Superlattices as materials , Epitaxy
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10557 , http://hdl.handle.net/10948/d1020866
- Description: The importance of infrared (IR) technology (for detection in the 3-5 μm and 8-14 μm atmospheric windows) has spread from military applications to civilian applications since World War II. The commercial IR detector market in these wavelength ranges is dominated by mercury cadmium telluride (MCT) alloys. The use of these alloys has, however, been faced with technological difficulties. One of the materials that have been tipped to be suitable to replace MCT is InAs/InxGa1-xSb strained layer superlattices (SLS’s). Atmospheric pressure metal-organic vapour phase epitaxy (MOVPE) has been used to grow InAs/GaSb strained layer superlattices (SLS’s) at 510 °C in this study. This is a starting point towards the development of MOVPE InAs/InxGa1-xSb SLS’s using the same system. Before the SLS’s could be attempted, the growth parameters for GaSb were optimised. Growth parameters for InAs were taken from reports on previous studies conducted using the same reactor. Initially, trimethylgallium, a source that has been used extensively in the same growth system for the growth of GaSb and InxGa1-xSb was intended to be used for gallium species. The high growth rates yielded by this source were too large for the growth of SLS structures, however. Thus, triethylgallium (rarely used for atmospheric pressure MOVPE) was utilized. GaSb layers (between 1 and 2 μm thick) were grown at two different temperatures (550 °C and 510 °C) with a varying V/III ratio. A V/III ratio of 1.5 was found to be optimal at 550 °C. However, the low incorporation efficiency of indium into GaSb at this temperature was inadequate to obtain InxGa1-xSb with an indium mole fraction (x) of around 0.3, which had previously been reported to be optimal for the performance of InAs/InxGa1-xSb SLS’s, due to the maximum splitting of the valence mini bands for this composition. The growth temperature was thus lowered to 510 °C. This resulted in an increase in the optimum V/III ratio to 1.75 for GaSb and yielded much higher incorporation efficiencies of indium in InxGa1-xSb. However, this lower growth temperature also produced poorer surface morphologies for both the binary and ternary layers, due to the reduced surface diffusion of the adsorbed species. An interface control study during the growth of InAs/GaSb SLS’s was subsequently conducted, by investigating the influence of different gas switching sequences on the interface type and quality. It was noted that the growth of SLS’s without any growth interruptions at the interfaces leads to tensile strained SLS’s (GaAs-like interfaces) with a rather large lattice mismatch. A 5 second flow of TMSb over the InAs surface and a flow of H2 over GaSb surface yielded compressively strained SLS’s. Flowing TMIn for 1 second and following by a flow of TMSb for 4 seconds over the GaSb surface, while flowing H2 for 5 seconds over the InAs surface, resulted in SLS’s with GaAs-like interfacial layers and a reduced lattice mismatch. Temperature gradients across the surface of the susceptor led to SLS’s with different structural quality. High resolution x-ray diffraction (HRXRD) was used to determine the thicknesses as well as the type of interfacial layers. The physical parameters of the SLS’s obtained from simulating the HRXRD spectra were comparable to the parameters obtained from cross sectional transmission electron microscopy (XTEM) images. The thicknesses of the layers and the interface type played a major role in determining the cut-off wavelength of the SLS’s.
- Full Text:
- Date Issued: 2013
- Authors: Miya, Senzo Simo
- Date: 2013
- Subjects: Gallium arsenide semiconductors , Organometallic compounds , Compound semiconductors , Metal organic chemical vapor deposition , Superlattices as materials , Epitaxy
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10557 , http://hdl.handle.net/10948/d1020866
- Description: The importance of infrared (IR) technology (for detection in the 3-5 μm and 8-14 μm atmospheric windows) has spread from military applications to civilian applications since World War II. The commercial IR detector market in these wavelength ranges is dominated by mercury cadmium telluride (MCT) alloys. The use of these alloys has, however, been faced with technological difficulties. One of the materials that have been tipped to be suitable to replace MCT is InAs/InxGa1-xSb strained layer superlattices (SLS’s). Atmospheric pressure metal-organic vapour phase epitaxy (MOVPE) has been used to grow InAs/GaSb strained layer superlattices (SLS’s) at 510 °C in this study. This is a starting point towards the development of MOVPE InAs/InxGa1-xSb SLS’s using the same system. Before the SLS’s could be attempted, the growth parameters for GaSb were optimised. Growth parameters for InAs were taken from reports on previous studies conducted using the same reactor. Initially, trimethylgallium, a source that has been used extensively in the same growth system for the growth of GaSb and InxGa1-xSb was intended to be used for gallium species. The high growth rates yielded by this source were too large for the growth of SLS structures, however. Thus, triethylgallium (rarely used for atmospheric pressure MOVPE) was utilized. GaSb layers (between 1 and 2 μm thick) were grown at two different temperatures (550 °C and 510 °C) with a varying V/III ratio. A V/III ratio of 1.5 was found to be optimal at 550 °C. However, the low incorporation efficiency of indium into GaSb at this temperature was inadequate to obtain InxGa1-xSb with an indium mole fraction (x) of around 0.3, which had previously been reported to be optimal for the performance of InAs/InxGa1-xSb SLS’s, due to the maximum splitting of the valence mini bands for this composition. The growth temperature was thus lowered to 510 °C. This resulted in an increase in the optimum V/III ratio to 1.75 for GaSb and yielded much higher incorporation efficiencies of indium in InxGa1-xSb. However, this lower growth temperature also produced poorer surface morphologies for both the binary and ternary layers, due to the reduced surface diffusion of the adsorbed species. An interface control study during the growth of InAs/GaSb SLS’s was subsequently conducted, by investigating the influence of different gas switching sequences on the interface type and quality. It was noted that the growth of SLS’s without any growth interruptions at the interfaces leads to tensile strained SLS’s (GaAs-like interfaces) with a rather large lattice mismatch. A 5 second flow of TMSb over the InAs surface and a flow of H2 over GaSb surface yielded compressively strained SLS’s. Flowing TMIn for 1 second and following by a flow of TMSb for 4 seconds over the GaSb surface, while flowing H2 for 5 seconds over the InAs surface, resulted in SLS’s with GaAs-like interfacial layers and a reduced lattice mismatch. Temperature gradients across the surface of the susceptor led to SLS’s with different structural quality. High resolution x-ray diffraction (HRXRD) was used to determine the thicknesses as well as the type of interfacial layers. The physical parameters of the SLS’s obtained from simulating the HRXRD spectra were comparable to the parameters obtained from cross sectional transmission electron microscopy (XTEM) images. The thicknesses of the layers and the interface type played a major role in determining the cut-off wavelength of the SLS’s.
- Full Text:
- Date Issued: 2013
The evolution of the Lepilemuridae-Cheirogaleidae clade
- Authors: Andrews, Curswan Allan
- Date: 2019
- Subjects: Lemurs
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/40216 , vital:35989
- Description: The Lepilemuridae and the Cheirogaleidae, according to recent molecular reconstructions, share a more recent common ancestor than previously thought. Further phylogenetic reconstructions have indicated that body size evolution in this clade was marked by repeated dwarfing events that coincided with changes in the environment. I aimed to investigate the morphological implications of changes in body size within the Lepilemur-cheirogaleid clade, testing four predictions. Together with Dr. Couette, I collected data on the overall palate shape and predicted that shape is likely to be influenced by several factors including phylogeny, body size and diet. Geometric morphometric analyses revealed that, although a strong phylogenetic signal was detected, diet had the major effect on palate shape. In a similar vein, when examining the arterial circulation patterns in these taxa, I predicted that changes in body size would result in changes and possible reductions in arterial size, particularly the internal carotid artery (ICA) and stapedial artery (SA). Analyses with micro-computed tomography (CT) and 3D imaging indicated that changes in body size led to reduction of a functional stapedial artery in Lepilemur, making it an intermediate stage between the daubentoniid, lemurid and indriid species with large stapedial arteries, and the smaller bodied cheirogaleids with an alternative blood supply in the form of an enlarged ascending pharyngeal artery. Lepilemur is the smallest living folivorous primate, and likely to be at the threshold body size to be able to subsist on such a poor diet. To investigate shifts in dietary patterns that accompanied changes in body size, I chose to explore the reported behaviour of caecotrophy as a possible means for the sportive lemurs to derive additional nutrient from their food sources. I predicted that, if caecotrophy is a way to assist folivory at small body size, the energy contained in “caecotrophic” and latrine faecal samples should be different. Analyses showed significant iv differences between the two types of faeces and, combined with an analysis of faecal bacterial diversity, support the occurrence of caecotrophy. Finally, I compared the digestive efficiency of two small, distantly related gummivorous primates that evolved their diets convergently. I studied the digestion of gum in Microcebus griseorufus and compared this with gum digestion in Galago moholi. I predicted that an evolutionary disposition to fermentation inherited from a folivorous ancestor would aid in the digestion of gum in mouse lemurs. Results indicated that retention time was prolonged by the presence of secondary compounds in Microcebus fed with Commiphora gum but relatively shorter (< 24 hrs) when fed Alantsilodenron gum, a preferred food. Despite the fact that G. moholi has an ansa coli, which is missing in M. griseorufus species, both are highly efficient at digesting gum. These data provide some of the first indicators of how dietary changes from a larger-bodied folivorous ancestor to partially gummivorous, small-bodied descendants may have occurred in evolutionary time.
- Full Text:
- Date Issued: 2019
- Authors: Andrews, Curswan Allan
- Date: 2019
- Subjects: Lemurs
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/40216 , vital:35989
- Description: The Lepilemuridae and the Cheirogaleidae, according to recent molecular reconstructions, share a more recent common ancestor than previously thought. Further phylogenetic reconstructions have indicated that body size evolution in this clade was marked by repeated dwarfing events that coincided with changes in the environment. I aimed to investigate the morphological implications of changes in body size within the Lepilemur-cheirogaleid clade, testing four predictions. Together with Dr. Couette, I collected data on the overall palate shape and predicted that shape is likely to be influenced by several factors including phylogeny, body size and diet. Geometric morphometric analyses revealed that, although a strong phylogenetic signal was detected, diet had the major effect on palate shape. In a similar vein, when examining the arterial circulation patterns in these taxa, I predicted that changes in body size would result in changes and possible reductions in arterial size, particularly the internal carotid artery (ICA) and stapedial artery (SA). Analyses with micro-computed tomography (CT) and 3D imaging indicated that changes in body size led to reduction of a functional stapedial artery in Lepilemur, making it an intermediate stage between the daubentoniid, lemurid and indriid species with large stapedial arteries, and the smaller bodied cheirogaleids with an alternative blood supply in the form of an enlarged ascending pharyngeal artery. Lepilemur is the smallest living folivorous primate, and likely to be at the threshold body size to be able to subsist on such a poor diet. To investigate shifts in dietary patterns that accompanied changes in body size, I chose to explore the reported behaviour of caecotrophy as a possible means for the sportive lemurs to derive additional nutrient from their food sources. I predicted that, if caecotrophy is a way to assist folivory at small body size, the energy contained in “caecotrophic” and latrine faecal samples should be different. Analyses showed significant iv differences between the two types of faeces and, combined with an analysis of faecal bacterial diversity, support the occurrence of caecotrophy. Finally, I compared the digestive efficiency of two small, distantly related gummivorous primates that evolved their diets convergently. I studied the digestion of gum in Microcebus griseorufus and compared this with gum digestion in Galago moholi. I predicted that an evolutionary disposition to fermentation inherited from a folivorous ancestor would aid in the digestion of gum in mouse lemurs. Results indicated that retention time was prolonged by the presence of secondary compounds in Microcebus fed with Commiphora gum but relatively shorter (< 24 hrs) when fed Alantsilodenron gum, a preferred food. Despite the fact that G. moholi has an ansa coli, which is missing in M. griseorufus species, both are highly efficient at digesting gum. These data provide some of the first indicators of how dietary changes from a larger-bodied folivorous ancestor to partially gummivorous, small-bodied descendants may have occurred in evolutionary time.
- Full Text:
- Date Issued: 2019
Energy yield modelling and analysis of photovoltaic systems in Namibia
- Authors: Dobreva, Petja
- Date: 2019
- Subjects: Photovoltaic power systems , Photovoltaic power generation Photovoltaic power generation -- Mathematical models
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/39523 , vital:35287
- Description: Generation of electricity from solar energy by photovoltaic systems has the potential to reduce dependence on non-renewable sources for electrical energy production. It can also reduce the cost of electricity for consumers by moving away from the traditional models of centralised generation combined with extensive transmission. The prices of photovoltaic system components have decreased so dramatically in recent years that nowadays a large portion of the cost of electricity produced by photovoltaic systems is due to the cost of investment capital rather than the cost of the physical parts of the system. The cost of capital is determined by the perceived risk of the investment and is contingent on predictive models whose aim is to project outputs reasonably achievable by the system. The output of a photovoltaic system depends strongly on external factors, like solar radiation and temperature, as well as internal, system specific factors. Models that can accurately predict the output of a photovoltaic system have direct impact on investment cost. Several measures, like root-mean-square-error or coincident of determination, have been used in the past to assess accuracy of models but they appear to be inadequate for the task. I suggest a new method, comprising qualitative and quantitative measures, for model evaluation and introduce two new quantities to assess the predictive capabilities of the models. Models of several photovoltaic systems in Namibia were created, the new evaluation approach was applied to them and the results were compared to the conclusions that would have been drawn if the old measures were used. Outdoor current-voltage measurements are used to assess the power output and general state of the solar generator of a photovoltaic system, but the measured values strongly depend on irradiance and temperature. The prevailing approach has been to transform the current-voltage characteristics to standard-test-conditions with the so-called translation equations and then compare the translated power to the nominal value. The translated value of the power, however, depends on the translation equations used and is not necessarily an accurate reaction of the state of the solar generator. I have proposed a new method for assessment of the state of the solar generator that relies only on the measured quantities and does not require translations to standard-test-conditions. This alternative method has been used in the assessment of the condition of the solar generators in the systems included in this study.
- Full Text:
- Date Issued: 2019
- Authors: Dobreva, Petja
- Date: 2019
- Subjects: Photovoltaic power systems , Photovoltaic power generation Photovoltaic power generation -- Mathematical models
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/39523 , vital:35287
- Description: Generation of electricity from solar energy by photovoltaic systems has the potential to reduce dependence on non-renewable sources for electrical energy production. It can also reduce the cost of electricity for consumers by moving away from the traditional models of centralised generation combined with extensive transmission. The prices of photovoltaic system components have decreased so dramatically in recent years that nowadays a large portion of the cost of electricity produced by photovoltaic systems is due to the cost of investment capital rather than the cost of the physical parts of the system. The cost of capital is determined by the perceived risk of the investment and is contingent on predictive models whose aim is to project outputs reasonably achievable by the system. The output of a photovoltaic system depends strongly on external factors, like solar radiation and temperature, as well as internal, system specific factors. Models that can accurately predict the output of a photovoltaic system have direct impact on investment cost. Several measures, like root-mean-square-error or coincident of determination, have been used in the past to assess accuracy of models but they appear to be inadequate for the task. I suggest a new method, comprising qualitative and quantitative measures, for model evaluation and introduce two new quantities to assess the predictive capabilities of the models. Models of several photovoltaic systems in Namibia were created, the new evaluation approach was applied to them and the results were compared to the conclusions that would have been drawn if the old measures were used. Outdoor current-voltage measurements are used to assess the power output and general state of the solar generator of a photovoltaic system, but the measured values strongly depend on irradiance and temperature. The prevailing approach has been to transform the current-voltage characteristics to standard-test-conditions with the so-called translation equations and then compare the translated power to the nominal value. The translated value of the power, however, depends on the translation equations used and is not necessarily an accurate reaction of the state of the solar generator. I have proposed a new method for assessment of the state of the solar generator that relies only on the measured quantities and does not require translations to standard-test-conditions. This alternative method has been used in the assessment of the condition of the solar generators in the systems included in this study.
- Full Text:
- Date Issued: 2019