Network analysis of trophic linkages in two sub-tropical estuaries along the South-East coast of South Africa
- Authors: Vosloo, Mathys Christiaan
- Date: 2012
- Subjects: Estuaries -- South Africa -- Eastern Cape , Estuarine ecology , Network analysis (Planning)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10708 , http://hdl.handle.net/10948/d1010966 , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology , Network analysis (Planning)
- Description: Estuaries are some of the most productive yet threatened ecosystems in the world. Despite their importance they face significant threats through changes to river flow, eutrophication, rapid population growth long the caost and harvesting of natural resources. A number of international studies have been conducted investigating the structure and functioning of an array of ecosystems using ecological network analysis. Energy flow networks have been contsructed for coastal, lagoonal, intertidial and, most notably, permantently open estuaries. Despite the valualble insights contributed by these and other studies, a lack of information on the majority of estuarine ecosystems exists.
- Full Text:
- Date Issued: 2012
- Authors: Vosloo, Mathys Christiaan
- Date: 2012
- Subjects: Estuaries -- South Africa -- Eastern Cape , Estuarine ecology , Network analysis (Planning)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10708 , http://hdl.handle.net/10948/d1010966 , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology , Network analysis (Planning)
- Description: Estuaries are some of the most productive yet threatened ecosystems in the world. Despite their importance they face significant threats through changes to river flow, eutrophication, rapid population growth long the caost and harvesting of natural resources. A number of international studies have been conducted investigating the structure and functioning of an array of ecosystems using ecological network analysis. Energy flow networks have been contsructed for coastal, lagoonal, intertidial and, most notably, permantently open estuaries. Despite the valualble insights contributed by these and other studies, a lack of information on the majority of estuarine ecosystems exists.
- Full Text:
- Date Issued: 2012
On the design of concentrator photovoltaic modules
- Authors: Schultz, Ross Dane
- Date: 2012
- Subjects: Photovoltaic cells -- Design and construction , Photovoltaic cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10546 , http://hdl.handle.net/10948/d1015766 , Photovoltaic cells -- Design and construction , Photovoltaic cells
- Description: High concentration photovoltaics (HCPV) promise a more efficient, higher power output than traditional photovoltaic modules. This is achieved by concentrating sunlight onto a small 1 cm2 triple junction (CTJ) InGaP/InGaAs/Ge cell by using precision optics. In order to achieve high performance, careful and informed design decisions must be made in the development of a HCPV module . This project investigated the design of a HCPV module and is divided into sections that concentrate on the optical design, thermal dissipation and electrical characterization of a concentration triple junction cell. The first HCPV module (Module I) design was based on the Sandia III Baseline Fresnel module which comprised of a Fresnel lens and truncated reflective secondary as the optical elements. The parameters of the CTJ cell in Module I increased with increased concentration. This included the short circuit current, open circuit voltage, power and efficiency. The best performance achieved was at 336 times operational concentration which produced 10.3 W per cell, a cell efficiency of 38.4 percent, and module efficiency of 24.2 percent Investigation of the optical subsystem revealed that the optics played a large role in the operation of the CTJ cell. Characterization of the optical elements showed a transmission loss of 15 percent of concentrated sunlight for the irradiance of which 66 percent of the loss occurred in wavelength region where the InGaP subcell is active. Characterization of the optical subsystem indicated regions of non-uniform irradiance and spectral intensity across the CTJ cell surface. The optical subsystem caused the InGaP subcell of the series monolithic connected CTJ cell to be current limiting. This was confirmed by the CTJ cell having the same short circuit current as the InGaP subcell. The performance of the CTJ cell decreased with an increase in operational temperature. A form of thermal dissipation was needed as 168 times more heat needs to be dissipated when compared to a flat plate photovoltaic module. The thermal dissipation was achieved by passive means with a heat sink which reduced the operational temperature of the CTJ cell from 50 oC to 21 oC above ambient. Cell damage was noted in Module I due to bubbles in the encapsulation epoxy bursting from a high, non-uniform intensity distribution. The development of the second module (Module II) employed a pre-monitoring criteria that characterized the CTJ cells and eliminated faulty cells from the system. These criteria included visual inspection of the cell, electroluminescence and one sun current-voltage (I-V) characteristic curves. Module II was designed as separate units which comprised of a Fresnel lens, refractive secondary, CTJ cell and heatsink. The optimal configuration between the two modules were compared. The CTJ cells in module II showed no form of degradation in the I-V characteristics and in the detected defects. The units under thermal and optical stress showed a progressive degradation. A feature in the I-V curve at V > Vmax was noted for the thermally stressed unit. This feature in the I-V curve may be attributed to the breakdown of the Ge subcell in the CTJ cell. Based on the results obtained from the two experimental HCPV modules, recommendations for an optimal HCPV module were made.
- Full Text:
- Date Issued: 2012
- Authors: Schultz, Ross Dane
- Date: 2012
- Subjects: Photovoltaic cells -- Design and construction , Photovoltaic cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10546 , http://hdl.handle.net/10948/d1015766 , Photovoltaic cells -- Design and construction , Photovoltaic cells
- Description: High concentration photovoltaics (HCPV) promise a more efficient, higher power output than traditional photovoltaic modules. This is achieved by concentrating sunlight onto a small 1 cm2 triple junction (CTJ) InGaP/InGaAs/Ge cell by using precision optics. In order to achieve high performance, careful and informed design decisions must be made in the development of a HCPV module . This project investigated the design of a HCPV module and is divided into sections that concentrate on the optical design, thermal dissipation and electrical characterization of a concentration triple junction cell. The first HCPV module (Module I) design was based on the Sandia III Baseline Fresnel module which comprised of a Fresnel lens and truncated reflective secondary as the optical elements. The parameters of the CTJ cell in Module I increased with increased concentration. This included the short circuit current, open circuit voltage, power and efficiency. The best performance achieved was at 336 times operational concentration which produced 10.3 W per cell, a cell efficiency of 38.4 percent, and module efficiency of 24.2 percent Investigation of the optical subsystem revealed that the optics played a large role in the operation of the CTJ cell. Characterization of the optical elements showed a transmission loss of 15 percent of concentrated sunlight for the irradiance of which 66 percent of the loss occurred in wavelength region where the InGaP subcell is active. Characterization of the optical subsystem indicated regions of non-uniform irradiance and spectral intensity across the CTJ cell surface. The optical subsystem caused the InGaP subcell of the series monolithic connected CTJ cell to be current limiting. This was confirmed by the CTJ cell having the same short circuit current as the InGaP subcell. The performance of the CTJ cell decreased with an increase in operational temperature. A form of thermal dissipation was needed as 168 times more heat needs to be dissipated when compared to a flat plate photovoltaic module. The thermal dissipation was achieved by passive means with a heat sink which reduced the operational temperature of the CTJ cell from 50 oC to 21 oC above ambient. Cell damage was noted in Module I due to bubbles in the encapsulation epoxy bursting from a high, non-uniform intensity distribution. The development of the second module (Module II) employed a pre-monitoring criteria that characterized the CTJ cells and eliminated faulty cells from the system. These criteria included visual inspection of the cell, electroluminescence and one sun current-voltage (I-V) characteristic curves. Module II was designed as separate units which comprised of a Fresnel lens, refractive secondary, CTJ cell and heatsink. The optimal configuration between the two modules were compared. The CTJ cells in module II showed no form of degradation in the I-V characteristics and in the detected defects. The units under thermal and optical stress showed a progressive degradation. A feature in the I-V curve at V > Vmax was noted for the thermally stressed unit. This feature in the I-V curve may be attributed to the breakdown of the Ge subcell in the CTJ cell. Based on the results obtained from the two experimental HCPV modules, recommendations for an optimal HCPV module were made.
- Full Text:
- Date Issued: 2012
On the optical and electrical design of low concentrator photovoltaic modules
- Authors: Benecke, Mario Andrew
- Date: 2012
- Subjects: Photovoltaic cells -- Design and construction , Photovoltaic cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10543 , http://hdl.handle.net/10948/d1013102
- Description: The increasing interest in non-fossil fuel based electricity generation has caused a prominent boost for the renewable energy sector, especially the field of Photovoltaics (PV) with one of the main reasons being the decrease in cost of PV electricity generation. However, over the last few years a saturation in the efficiency of solar cells have been reached leading into a renewed search for other means to further reduce the cost of electricity generation from photovoltaic sources. One of the technologies that has attracted a lot of attention is low concentration photovoltaics (LCPV). LCPV investigates an alternative strategy to replace costly semiconductor material with relatively cheap optical materials by developing a Low Concentration Photovoltaic (LCPV) module. A LCPV module is divided into three subsystems, namely, the optical, electrical and thermal subsystem. This study focussed on the design, construction and characterisation of an optical subsystem accompanied by a thorough investigation into the design of an electrical subsystem. A facetted parabolic concentrator using a vertical receiver was modelled and a first prototype was constructed having a geometric concentration factor of 6.00 X. Upon electrical characterisation of this first vertical receiver LCPV prototype a concentration of only 4.53 X (receiver 1) and 4.71 X (receiver 2) was obtained. The first vertical receiver LCPV prototype did not reach the expected concentration factor due to optical losses and misalignment of optical elements. The illumination profile obtained from the reflector element was investigated and an undesirable non-uniform illumination profile was discovered. A second vertical receiver LCPV prototype was constructed in an attempt to improve on the first prototype, this second vertical receiver prototype had a geometrical concentration factor of 5.80 X. The results indicated a much improved illumination profile, yet still containing a number of non-uniformities. The second vertical receiver LCPV module yielded an operational concentration factor of 5.34 X. From the preliminary results obtained it was discovered that under concentrated illumination there was a limitation on the maximum power that could be obtained from the receiver. Upon further investigation it was discovered that this limitation was due to the higher current levels under concentrated illumination accompanied by a high series resistance of the receiver. This lead to the construction of new PV receivers, where this limitation could be minimised. 3 cell, 4 cell, 6 cell and 8 cell string configurations were constructed and used for the electrical characterisation of the prototypes. Due to non-uniformity of the illumination profile obtained from the second LCPV prototype a third vertical receiver LCPV prototype was constructed. This vertical receiver design illustrated more uniformity in the obtained illumination distribution and had a geometrical concentration factor of 4.61 X, although under operation only 4.26 X could be obtained. It is important to note that the geometric concentration factor does not account for reflective losses of the reflective material. One of the main reasons for the difficulty in obtaining a uniform illumination profile with the vertical receiver design is that the facetted reflector element is far away from the PV receiver. This enhances the effect of the slightest misalignment of any of the optical elements. This large distance also increases the effect of lensing from each facet. These factors lead to the consideration of a second design, which would counteract these factors. A horizontal receiver LCPV module design implementing a facetted parabolic reflector was considered to counteract these effects. From a mathematical model a horizontal receiver LCPV prototype was constructed having a geometrical concentration factor 5.3 X. The optical characterisation of the illumination profile showed a much improved illumination profile, which was much more uniform than the previous illumination profiles obtained from the other LCPV prototypes. The uniformity of the illumination profile could be seen in results obtained from the electrical characterisation where the concentrator reached operational concentration factor of 5.01 X. The reliability of the third vertical receiver LCPV prototype and the horizontal receiver LCPV prototype as well as the receivers were investigated by placing each receiver under stressed operational conditions for 60 sun hours. I-V characteristics were obtained after every five sun hours to investigate any signs of degradation. After 60 sun hours none of the receiver displayed any signs of degradation or reduction in electrical performance.
- Full Text:
- Date Issued: 2012
- Authors: Benecke, Mario Andrew
- Date: 2012
- Subjects: Photovoltaic cells -- Design and construction , Photovoltaic cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10543 , http://hdl.handle.net/10948/d1013102
- Description: The increasing interest in non-fossil fuel based electricity generation has caused a prominent boost for the renewable energy sector, especially the field of Photovoltaics (PV) with one of the main reasons being the decrease in cost of PV electricity generation. However, over the last few years a saturation in the efficiency of solar cells have been reached leading into a renewed search for other means to further reduce the cost of electricity generation from photovoltaic sources. One of the technologies that has attracted a lot of attention is low concentration photovoltaics (LCPV). LCPV investigates an alternative strategy to replace costly semiconductor material with relatively cheap optical materials by developing a Low Concentration Photovoltaic (LCPV) module. A LCPV module is divided into three subsystems, namely, the optical, electrical and thermal subsystem. This study focussed on the design, construction and characterisation of an optical subsystem accompanied by a thorough investigation into the design of an electrical subsystem. A facetted parabolic concentrator using a vertical receiver was modelled and a first prototype was constructed having a geometric concentration factor of 6.00 X. Upon electrical characterisation of this first vertical receiver LCPV prototype a concentration of only 4.53 X (receiver 1) and 4.71 X (receiver 2) was obtained. The first vertical receiver LCPV prototype did not reach the expected concentration factor due to optical losses and misalignment of optical elements. The illumination profile obtained from the reflector element was investigated and an undesirable non-uniform illumination profile was discovered. A second vertical receiver LCPV prototype was constructed in an attempt to improve on the first prototype, this second vertical receiver prototype had a geometrical concentration factor of 5.80 X. The results indicated a much improved illumination profile, yet still containing a number of non-uniformities. The second vertical receiver LCPV module yielded an operational concentration factor of 5.34 X. From the preliminary results obtained it was discovered that under concentrated illumination there was a limitation on the maximum power that could be obtained from the receiver. Upon further investigation it was discovered that this limitation was due to the higher current levels under concentrated illumination accompanied by a high series resistance of the receiver. This lead to the construction of new PV receivers, where this limitation could be minimised. 3 cell, 4 cell, 6 cell and 8 cell string configurations were constructed and used for the electrical characterisation of the prototypes. Due to non-uniformity of the illumination profile obtained from the second LCPV prototype a third vertical receiver LCPV prototype was constructed. This vertical receiver design illustrated more uniformity in the obtained illumination distribution and had a geometrical concentration factor of 4.61 X, although under operation only 4.26 X could be obtained. It is important to note that the geometric concentration factor does not account for reflective losses of the reflective material. One of the main reasons for the difficulty in obtaining a uniform illumination profile with the vertical receiver design is that the facetted reflector element is far away from the PV receiver. This enhances the effect of the slightest misalignment of any of the optical elements. This large distance also increases the effect of lensing from each facet. These factors lead to the consideration of a second design, which would counteract these factors. A horizontal receiver LCPV module design implementing a facetted parabolic reflector was considered to counteract these effects. From a mathematical model a horizontal receiver LCPV prototype was constructed having a geometrical concentration factor 5.3 X. The optical characterisation of the illumination profile showed a much improved illumination profile, which was much more uniform than the previous illumination profiles obtained from the other LCPV prototypes. The uniformity of the illumination profile could be seen in results obtained from the electrical characterisation where the concentrator reached operational concentration factor of 5.01 X. The reliability of the third vertical receiver LCPV prototype and the horizontal receiver LCPV prototype as well as the receivers were investigated by placing each receiver under stressed operational conditions for 60 sun hours. I-V characteristics were obtained after every five sun hours to investigate any signs of degradation. After 60 sun hours none of the receiver displayed any signs of degradation or reduction in electrical performance.
- Full Text:
- Date Issued: 2012
On the thermal and electrical properties of low concentrator photovoltaic systems
- Authors: Gerber, Jacques Dewald
- Date: 2012
- Subjects: Photovoltaic power systems , Photovoltaic cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10561 , http://hdl.handle.net/10948/d1021219
- Description: Low concentrator photovoltaic systems are capable of increasing the power produced by conventional silicon photovoltaic cells, thus effectively lowering the cost per kWh. However, power losses associated with resistance and temperature have limited the large scale implementation of this technology. In this study, the optical-,electrical- and thermal sub-systems of a low concentrator photovoltaic system are theoretically and experimentally evaluated with the aim of minimizing the power losses associated with series resistance and temperature. A 7-facet reflector system, with an effective concentration ratio of 4.7, is used to focus irradiance along a string of series connected poly-crystalline photovoltaic cells. I-V characteristics of 4-, 6- and 8-cell photovoltaic receivers are measured under 1-sun and 4.83-sun conditions. Under concentration, the 8-cell photovoltaic receiver produced 23 percent more power than the 4-cell photovoltaic receiver, which suggests that the effect of series resistance can be minimized if smaller, lower current photovoltaic cells are used. A thermal model, which may be used to predict operating temperatures of a low concentrator photovoltaic system, is experimentally evaluated within a thermally insulated enclosure. The temperatures predicted by the thermal model are generally within 5 percent of the experimental temperatures. The high operating temperatures associated with the low concentrator photovoltaic system are significantly reduced by the addition of aluminium heat sink. In addition, the results of a thermal stress test indicated that these high operating temperatures do not degrade the photovoltaic cells used in this study. The results of this study suggest that the power output of low concentrator photovoltaic systems can be maximized by decreasing the size of the photovoltaic cells and including an appropriate heat sink to aid convective cooling.
- Full Text:
- Date Issued: 2012
- Authors: Gerber, Jacques Dewald
- Date: 2012
- Subjects: Photovoltaic power systems , Photovoltaic cells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10561 , http://hdl.handle.net/10948/d1021219
- Description: Low concentrator photovoltaic systems are capable of increasing the power produced by conventional silicon photovoltaic cells, thus effectively lowering the cost per kWh. However, power losses associated with resistance and temperature have limited the large scale implementation of this technology. In this study, the optical-,electrical- and thermal sub-systems of a low concentrator photovoltaic system are theoretically and experimentally evaluated with the aim of minimizing the power losses associated with series resistance and temperature. A 7-facet reflector system, with an effective concentration ratio of 4.7, is used to focus irradiance along a string of series connected poly-crystalline photovoltaic cells. I-V characteristics of 4-, 6- and 8-cell photovoltaic receivers are measured under 1-sun and 4.83-sun conditions. Under concentration, the 8-cell photovoltaic receiver produced 23 percent more power than the 4-cell photovoltaic receiver, which suggests that the effect of series resistance can be minimized if smaller, lower current photovoltaic cells are used. A thermal model, which may be used to predict operating temperatures of a low concentrator photovoltaic system, is experimentally evaluated within a thermally insulated enclosure. The temperatures predicted by the thermal model are generally within 5 percent of the experimental temperatures. The high operating temperatures associated with the low concentrator photovoltaic system are significantly reduced by the addition of aluminium heat sink. In addition, the results of a thermal stress test indicated that these high operating temperatures do not degrade the photovoltaic cells used in this study. The results of this study suggest that the power output of low concentrator photovoltaic systems can be maximized by decreasing the size of the photovoltaic cells and including an appropriate heat sink to aid convective cooling.
- Full Text:
- Date Issued: 2012
Optimising the polymer solutions and process parameters in the electrospinning of Chitosan
- Authors: Jacobs, Nokwindla Valencia
- Date: 2012
- Subjects: Textile fibers, Synthetic , Nanofibers , Chitosan , Polymer solutions
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: vital:10449 , http://hdl.handle.net/10948/d1010762 , Textile fibers, Synthetic , Nanofibers , Chitosan , Polymer solutions
- Description: Electrospinning is a technique, which can be used to produce nanofibrous materials by introducing electrostatic fields into the polymer solution. Due to their intrinsic properties, such as small fiber diameter, small pore size and large surface area, nanofibres are suitable for use in a variety of applications including wound dressing, filtration, composites and tissue engineering. The study demonstrates the successful and optimised production of Poly(ethylene oxide) (PEO) and chitosan nanofibres by electrospinning. The biocidal effects of chitosan, chitosan-silver nanofibres and silver nanoparticles were successfully investigated. To set up a functional electrospinning apparatus, the PEO solution parameters (concentration, molecular weight, solvent, and addition of polyelectrolyte) and applied potential voltage on the structural morphology and diameter of PEO nanofibres were studied. At lower PEO concentrations, the fibres had morphology with a large variation in fibre diameter, whereas at the higher concentrations, the nanofibres exhibited ordinary morphology with uniform but larger fibre diameters. Higher molecular weight showed larger average diameters when compared to that obtained with the same polymer but of a lower molecular weight. The addition of polyelectrolyte to the polymer solution had an influence on the structural morphology of the PEO. Flow simulation studies of an electrically charged polymer solution showed that an increase in the flow rate was associated with an increase in poly(allylamine hydrochloride) (PAH) concentration for the low molecular weight polymer, the shape and size of the Taylor cone increasing with an increase in PAH concentration for the low molecular weight polymer. During optimization of the PEO nanofibres, based on statistical modelling and using the Box and Behnken factorial design, the interaction effect between PAH concentration and the tip-to-collector distance played the most significant role in obtaining uniform diameter of nanofibres, followed by the interaction between the tip-to-collector distance and the applied voltage and lastly by the applied voltage. The production and optimization of chitosan nanofibres indicated that the interactions between electric field strength and the ratio of trifluoroacetic acid (TFA) and dichloromethane (DCM), TFA/DCM solvents as well as between electric field strength and chitosan concentration had the most significant effect, followed by the concentration of chitosan in terms of producing nanofibres with uniform diameters. Chitosan and chitosan-silver nanofibres could be successfully electrospun by controlling the solution properties, such as surface tension and electrical conductivity with the silver nanoparticles in the chitosan solutions affecting the electrospinnability. The silver nanoparticles in the chitosan solution modified the morphological characteristics of the electrospun nanofibres, while the conductivity and the surface tension were elevated. The fibre diameter of the chitosan and chitosan-silver nanoparticles decreased with an increase in the silver content. The electrospun chitosan nanofibres had a smooth surface and round shape as compared to the silver-chitosan nanofibres with a distorted morphology. The chitosan and chitosan-silver nanofibres as well as the silver nanoparticles exhibited antimicrobial or inhibition activity against S. aureus than against E. coli. S. aureus bacterial culture showed good cell adhesion and spreading inwards into the chitosan nanofibrous membrane. The chitosan-silver nanofibres exhibited a greater minimum inhibitory concentration (MIC), followed by silver nanoparticles and then chitosan nanofibres; suggesting a synergistic effect between the chitosan and silver nanoparticles.
- Full Text:
- Date Issued: 2012
- Authors: Jacobs, Nokwindla Valencia
- Date: 2012
- Subjects: Textile fibers, Synthetic , Nanofibers , Chitosan , Polymer solutions
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: vital:10449 , http://hdl.handle.net/10948/d1010762 , Textile fibers, Synthetic , Nanofibers , Chitosan , Polymer solutions
- Description: Electrospinning is a technique, which can be used to produce nanofibrous materials by introducing electrostatic fields into the polymer solution. Due to their intrinsic properties, such as small fiber diameter, small pore size and large surface area, nanofibres are suitable for use in a variety of applications including wound dressing, filtration, composites and tissue engineering. The study demonstrates the successful and optimised production of Poly(ethylene oxide) (PEO) and chitosan nanofibres by electrospinning. The biocidal effects of chitosan, chitosan-silver nanofibres and silver nanoparticles were successfully investigated. To set up a functional electrospinning apparatus, the PEO solution parameters (concentration, molecular weight, solvent, and addition of polyelectrolyte) and applied potential voltage on the structural morphology and diameter of PEO nanofibres were studied. At lower PEO concentrations, the fibres had morphology with a large variation in fibre diameter, whereas at the higher concentrations, the nanofibres exhibited ordinary morphology with uniform but larger fibre diameters. Higher molecular weight showed larger average diameters when compared to that obtained with the same polymer but of a lower molecular weight. The addition of polyelectrolyte to the polymer solution had an influence on the structural morphology of the PEO. Flow simulation studies of an electrically charged polymer solution showed that an increase in the flow rate was associated with an increase in poly(allylamine hydrochloride) (PAH) concentration for the low molecular weight polymer, the shape and size of the Taylor cone increasing with an increase in PAH concentration for the low molecular weight polymer. During optimization of the PEO nanofibres, based on statistical modelling and using the Box and Behnken factorial design, the interaction effect between PAH concentration and the tip-to-collector distance played the most significant role in obtaining uniform diameter of nanofibres, followed by the interaction between the tip-to-collector distance and the applied voltage and lastly by the applied voltage. The production and optimization of chitosan nanofibres indicated that the interactions between electric field strength and the ratio of trifluoroacetic acid (TFA) and dichloromethane (DCM), TFA/DCM solvents as well as between electric field strength and chitosan concentration had the most significant effect, followed by the concentration of chitosan in terms of producing nanofibres with uniform diameters. Chitosan and chitosan-silver nanofibres could be successfully electrospun by controlling the solution properties, such as surface tension and electrical conductivity with the silver nanoparticles in the chitosan solutions affecting the electrospinnability. The silver nanoparticles in the chitosan solution modified the morphological characteristics of the electrospun nanofibres, while the conductivity and the surface tension were elevated. The fibre diameter of the chitosan and chitosan-silver nanoparticles decreased with an increase in the silver content. The electrospun chitosan nanofibres had a smooth surface and round shape as compared to the silver-chitosan nanofibres with a distorted morphology. The chitosan and chitosan-silver nanofibres as well as the silver nanoparticles exhibited antimicrobial or inhibition activity against S. aureus than against E. coli. S. aureus bacterial culture showed good cell adhesion and spreading inwards into the chitosan nanofibrous membrane. The chitosan-silver nanofibres exhibited a greater minimum inhibitory concentration (MIC), followed by silver nanoparticles and then chitosan nanofibres; suggesting a synergistic effect between the chitosan and silver nanoparticles.
- Full Text:
- Date Issued: 2012
Peri-urban agriculture and population growth : the case of Asmara, Eritrea
- Authors: Fessahaie, Tesfamichael
- Date: 2012
- Subjects: Urban agriculture -- Eritrea -- Asmara , Cities and towns -- Eritrea -- Asmara -- Growth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10668 , http://hdl.handle.net/10948/d109790
- Description: The aim of this thesis is to provide a differentiated view of peri-urban agriculture in the context of urban population growth in Asmara, Eritrea. Peri-urban agriculture is viewed as a distinct type of broader urban agriculture, and in this case is not as subsistence-orientated as other branches of it. Urban population growth is comprised of three elements, namely, natural population increase, rural-urban migration and outward movement of people to the urban periphery linked to urban expansion. Each receives extensive treatment. Asmara is the capital city of Eritrea and using Weeks (2004:473) phrase can be termed as a “primate city”. As such, it exerts a major influence on the political, economic and cultural life of the country, but has never been subjected to this type of research. The analytical framework that is adopted is that of urban population growth. In order to operationalize it, theoretical insights into each of its three branches were applied. For example, the informalisation of the economy in developing cities was used to explain the operation of peri-urban agriculture in the context of natural population growth. An adaption of the original Harris-Todaro Model by Fields (2004) was used for the migrants, and the Mosaic Model by Bryant and Johnson (1992) for those facing urban encroachment. Primary data were collected in the field by the author with the help of research assistants. This was supplemented by secondary data which involved reports commissioned by the Ministry of Agriculture and the Ministry of Public Works. Focus Group discussions were also held to supplement the data with information, views and insights that do not emerge in one-to-one interviews. This thesis demonstrates that those respondents operating within the context of natural population growth make a viable living from peri-urban agriculture, but that they also recognise that there are considerable challenges to be faced. Three sub-groups of farmers are identified. Of these, poultry farmers are the most vulnerable because of the high costs of the inputs, the uncertainty associated with avian „flu and an undeveloped distribution network. The vegetable producers, on the other hand, have a sophisticated marketing network, but low levels of education, high household numbers and an impending shortage of land and water. The agriculturalists that have migrated to Asmara seem to have created sustainable occupations for themselves over a number of years. However, 75 percent of them felt that migration to Asmara was not worthwhile. This negative view is explained in terms of the struggle it has taken to maintain such a living and the growing shortage of land. This set of farmers achieves lower production levels than its city-reared counterparts, carries considerable expenses and has to hire its land. The farmers who have had to cope with urban encroachment fall into two classes. The first has chosen to remain in peri-urban agriculture despite feeling the pressure to scale down activities and thus have a lower income. The majority of this group are dairy farmers who have to trade off increasing costs of cattle feed against shrinking grazing land. They are unwilling to take the initiative to solve their land problems, but look to the authorities to do so. The second class of respondents in this category have abandoned their agricultural holdings. The majority of these agriculturalists are poultry farmers living in the Eastern side of the city. A shortage of agricultural land, high population densities and high costs of inputs make poultry farming difficult. This thesis, therefore, presents a multifaceted view of peri-urban agriculture. While each set of farmers has to cope with its own particular circumstances, there is a common factor. This is the tension between preserving agricultural land on the urban fringe and the need to expand the city to accommodate its inhabitants.
- Full Text:
- Date Issued: 2012
- Authors: Fessahaie, Tesfamichael
- Date: 2012
- Subjects: Urban agriculture -- Eritrea -- Asmara , Cities and towns -- Eritrea -- Asmara -- Growth
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10668 , http://hdl.handle.net/10948/d109790
- Description: The aim of this thesis is to provide a differentiated view of peri-urban agriculture in the context of urban population growth in Asmara, Eritrea. Peri-urban agriculture is viewed as a distinct type of broader urban agriculture, and in this case is not as subsistence-orientated as other branches of it. Urban population growth is comprised of three elements, namely, natural population increase, rural-urban migration and outward movement of people to the urban periphery linked to urban expansion. Each receives extensive treatment. Asmara is the capital city of Eritrea and using Weeks (2004:473) phrase can be termed as a “primate city”. As such, it exerts a major influence on the political, economic and cultural life of the country, but has never been subjected to this type of research. The analytical framework that is adopted is that of urban population growth. In order to operationalize it, theoretical insights into each of its three branches were applied. For example, the informalisation of the economy in developing cities was used to explain the operation of peri-urban agriculture in the context of natural population growth. An adaption of the original Harris-Todaro Model by Fields (2004) was used for the migrants, and the Mosaic Model by Bryant and Johnson (1992) for those facing urban encroachment. Primary data were collected in the field by the author with the help of research assistants. This was supplemented by secondary data which involved reports commissioned by the Ministry of Agriculture and the Ministry of Public Works. Focus Group discussions were also held to supplement the data with information, views and insights that do not emerge in one-to-one interviews. This thesis demonstrates that those respondents operating within the context of natural population growth make a viable living from peri-urban agriculture, but that they also recognise that there are considerable challenges to be faced. Three sub-groups of farmers are identified. Of these, poultry farmers are the most vulnerable because of the high costs of the inputs, the uncertainty associated with avian „flu and an undeveloped distribution network. The vegetable producers, on the other hand, have a sophisticated marketing network, but low levels of education, high household numbers and an impending shortage of land and water. The agriculturalists that have migrated to Asmara seem to have created sustainable occupations for themselves over a number of years. However, 75 percent of them felt that migration to Asmara was not worthwhile. This negative view is explained in terms of the struggle it has taken to maintain such a living and the growing shortage of land. This set of farmers achieves lower production levels than its city-reared counterparts, carries considerable expenses and has to hire its land. The farmers who have had to cope with urban encroachment fall into two classes. The first has chosen to remain in peri-urban agriculture despite feeling the pressure to scale down activities and thus have a lower income. The majority of this group are dairy farmers who have to trade off increasing costs of cattle feed against shrinking grazing land. They are unwilling to take the initiative to solve their land problems, but look to the authorities to do so. The second class of respondents in this category have abandoned their agricultural holdings. The majority of these agriculturalists are poultry farmers living in the Eastern side of the city. A shortage of agricultural land, high population densities and high costs of inputs make poultry farming difficult. This thesis, therefore, presents a multifaceted view of peri-urban agriculture. While each set of farmers has to cope with its own particular circumstances, there is a common factor. This is the tension between preserving agricultural land on the urban fringe and the need to expand the city to accommodate its inhabitants.
- Full Text:
- Date Issued: 2012
Phenotypic plasticity of metabolic rate in an afrotropical bird species (Euplectes orix) across a temperature gradient
- Van de Ven, Tanja Maria Francisca Nicole
- Authors: Van de Ven, Tanja Maria Francisca Nicole
- Date: 2012
- Subjects: Phenotypic plasticity , Evolutionary genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10718 , http://hdl.handle.net/10948/d1012659 , Phenotypic plasticity , Evolutionary genetics
- Description: Avian species are known to have the capacity to respond to environmental changes through physiological adjustments. The process whereby organisms adjust their phenotype without genetic change is termed phenotypic plasticity and it is mostly observed to be a phenotypic improvement to ecological challenges. Metabolic rate (MR), which is the rate of energy expenditure in a species, is a highly flexible physiological parameter which results in a great diversity of avian standardised metabolic rates. Like birds from high latitudes, Afrotropical bird species are expected to have the capacity to adjust their energy expenditure to match the availability of resources. Previous studies on the flexibility of physiological parameters in birds have focused on the magnitude of change of physiological adjustments and the cues inducing these changes. Comparative research has furthermore investigated metabolic rates across aridity, altitude, latitude and temperature gradients. Recently, a clear dichotomy has become evident with elevated metabolic rates observed in high latitude birds in winter and a down-regulation of metabolic rates observed in birds exposed to low latitude mild winters. In this study, the shape of the reaction norm, the magnitude, the reversibility, the direction and the rate of change of two physiological parameters, basal metabolic rate (BMR) and summit metabolic rate (Msum), were investigated in a coastal and an inland population of Southern Red Bishops (Euplectes orix) through seasonal acclimatisation and laboratory acclimation. Summer and winter basal metabolic rates as well as body mass, were highly flexible traits in free-ranging coastal and inland Red Bishops. Birds acclimatised to a mild coastal climate in winter exhibited reduced basal and summit metabolic rates, whereas birds originating from a more variable inland climate increased basal metabolic rate in winter, but did not show increases of Msum in winter. Red Bishops responded to short term thermal acclimation under laboratory conditions by gradually changing body mass. Acclimation periods of 21 days revealed a negative relationship between body mass and acclimation air temperature. Peak responses of basal metabolic rate to ambient temperature change were observed in both coastal and inland birds between two and eight days after the change in acclimation air temperature. The influences of seasonal acclimatisation on energy expenditure differed between coastal and inland birds, however, during laboratory acclimation individuals from the two populations showed no difference in response. Within the individuals of the coastal and inland Southern Red Bishops, phenotypic flexibility is observed in body mass, basal metabolic rate and summit metabolic rate as a response to environmental changes. This flexibility is thought to increase thermoregulatory capacities of the Southern Red Bishop in different habitats and climates.
- Full Text:
- Date Issued: 2012
- Authors: Van de Ven, Tanja Maria Francisca Nicole
- Date: 2012
- Subjects: Phenotypic plasticity , Evolutionary genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10718 , http://hdl.handle.net/10948/d1012659 , Phenotypic plasticity , Evolutionary genetics
- Description: Avian species are known to have the capacity to respond to environmental changes through physiological adjustments. The process whereby organisms adjust their phenotype without genetic change is termed phenotypic plasticity and it is mostly observed to be a phenotypic improvement to ecological challenges. Metabolic rate (MR), which is the rate of energy expenditure in a species, is a highly flexible physiological parameter which results in a great diversity of avian standardised metabolic rates. Like birds from high latitudes, Afrotropical bird species are expected to have the capacity to adjust their energy expenditure to match the availability of resources. Previous studies on the flexibility of physiological parameters in birds have focused on the magnitude of change of physiological adjustments and the cues inducing these changes. Comparative research has furthermore investigated metabolic rates across aridity, altitude, latitude and temperature gradients. Recently, a clear dichotomy has become evident with elevated metabolic rates observed in high latitude birds in winter and a down-regulation of metabolic rates observed in birds exposed to low latitude mild winters. In this study, the shape of the reaction norm, the magnitude, the reversibility, the direction and the rate of change of two physiological parameters, basal metabolic rate (BMR) and summit metabolic rate (Msum), were investigated in a coastal and an inland population of Southern Red Bishops (Euplectes orix) through seasonal acclimatisation and laboratory acclimation. Summer and winter basal metabolic rates as well as body mass, were highly flexible traits in free-ranging coastal and inland Red Bishops. Birds acclimatised to a mild coastal climate in winter exhibited reduced basal and summit metabolic rates, whereas birds originating from a more variable inland climate increased basal metabolic rate in winter, but did not show increases of Msum in winter. Red Bishops responded to short term thermal acclimation under laboratory conditions by gradually changing body mass. Acclimation periods of 21 days revealed a negative relationship between body mass and acclimation air temperature. Peak responses of basal metabolic rate to ambient temperature change were observed in both coastal and inland birds between two and eight days after the change in acclimation air temperature. The influences of seasonal acclimatisation on energy expenditure differed between coastal and inland birds, however, during laboratory acclimation individuals from the two populations showed no difference in response. Within the individuals of the coastal and inland Southern Red Bishops, phenotypic flexibility is observed in body mass, basal metabolic rate and summit metabolic rate as a response to environmental changes. This flexibility is thought to increase thermoregulatory capacities of the Southern Red Bishop in different habitats and climates.
- Full Text:
- Date Issued: 2012
Photoconductive spectroscopy of GaSb thin films
- Authors: Shura, Megersa Wodajo
- Date: 2012
- Subjects: Photoelectron spectroscopy , Photoconductivity
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10549 , http://hdl.handle.net/10948/d1019937
- Description: In this study, we have investigated the photo-response of gallium antimonide (GaSb) by measuring the spectral, injection level, as well as the temperature dependence of the steady-state photoconductivity of epitaxial films. By combining the various photo-response measurements with-galvanometric measurements, the effective excess carrier lifetimes could be calculated and described in terms of the various experimental variables considered. From a comparison of the measured and theoretical carrier lifetimes, a clear discrepancy was found for the injection dependent results. This inconsistency between the expected and measured behaviours was resolved using a two-layer model to describe the photo-conductive response of the thin film. In this model, the generation/recombination processes are considered for the bulk as well as for a depleted near-surface region. By combining these two contributions when calculating the total excess photocurrent, the various experimental results could be successfully described. The photo-response measurements revealed that the main contribution to the photocurrent came from the near-surface region, where the bandto- band and Auger recombination transitions are reduced. From the simulation of the injection level dependence of the excess carrier lifetime, some of the near-surface characteristics, such as the position of the surface Fermi-level and the surface recombination velocity, could be determined. In the case of p-type GaSb, the room temperature surface Fermi-level was found to be pinned (290±20) meV above the valence band maximum, whereas the n-type material had a pinning position of (150±20) meV above the valence band maximum. These pinning positions were shown to be independent of the doping density and relatively insensitive to the surface treatments considered. The presence of a near-surface depletion region, as well as the position of the surface Fermi-level, was corroborated by Raman spectroscopy. From a comparison of the phonon mode and the phonon-hole plasmon coupled mode, a surface Fermi-level position of (300 ± 30) meV was deduced for p-type GaSb. Finally, the effect various surface treatments have on the photo-response, and related surface properties, were investigated. Removal of the native oxide (HCl:H2O) followed by sulphur passivation (Na2S:9H2O) results in a slight decrease in the surface Fermi-level position. Aging studies however revealed that the surface characteristics reverted back to the untreated values following a few days in air. Coating the GaSb surfaces with a thin ZnS layer was found to have little effect on the surface potential, resulting only in a slight increase in the near-surface donor density. The sensitivity of the measured photocurrent to surface treatments and changes in the ambient with cooling, further validate the importance of considering the surface potential and the related space-charge when describing the photoconductive response of GaSb thin films.
- Full Text:
- Date Issued: 2012
- Authors: Shura, Megersa Wodajo
- Date: 2012
- Subjects: Photoelectron spectroscopy , Photoconductivity
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10549 , http://hdl.handle.net/10948/d1019937
- Description: In this study, we have investigated the photo-response of gallium antimonide (GaSb) by measuring the spectral, injection level, as well as the temperature dependence of the steady-state photoconductivity of epitaxial films. By combining the various photo-response measurements with-galvanometric measurements, the effective excess carrier lifetimes could be calculated and described in terms of the various experimental variables considered. From a comparison of the measured and theoretical carrier lifetimes, a clear discrepancy was found for the injection dependent results. This inconsistency between the expected and measured behaviours was resolved using a two-layer model to describe the photo-conductive response of the thin film. In this model, the generation/recombination processes are considered for the bulk as well as for a depleted near-surface region. By combining these two contributions when calculating the total excess photocurrent, the various experimental results could be successfully described. The photo-response measurements revealed that the main contribution to the photocurrent came from the near-surface region, where the bandto- band and Auger recombination transitions are reduced. From the simulation of the injection level dependence of the excess carrier lifetime, some of the near-surface characteristics, such as the position of the surface Fermi-level and the surface recombination velocity, could be determined. In the case of p-type GaSb, the room temperature surface Fermi-level was found to be pinned (290±20) meV above the valence band maximum, whereas the n-type material had a pinning position of (150±20) meV above the valence band maximum. These pinning positions were shown to be independent of the doping density and relatively insensitive to the surface treatments considered. The presence of a near-surface depletion region, as well as the position of the surface Fermi-level, was corroborated by Raman spectroscopy. From a comparison of the phonon mode and the phonon-hole plasmon coupled mode, a surface Fermi-level position of (300 ± 30) meV was deduced for p-type GaSb. Finally, the effect various surface treatments have on the photo-response, and related surface properties, were investigated. Removal of the native oxide (HCl:H2O) followed by sulphur passivation (Na2S:9H2O) results in a slight decrease in the surface Fermi-level position. Aging studies however revealed that the surface characteristics reverted back to the untreated values following a few days in air. Coating the GaSb surfaces with a thin ZnS layer was found to have little effect on the surface potential, resulting only in a slight increase in the near-surface donor density. The sensitivity of the measured photocurrent to surface treatments and changes in the ambient with cooling, further validate the importance of considering the surface potential and the related space-charge when describing the photoconductive response of GaSb thin films.
- Full Text:
- Date Issued: 2012
Physico-chemical and microalgal characteristics of the Goukamma Estuary
- Authors: Kaselowski, Tanja
- Date: 2012
- Subjects: Estuarine ecology , Estuaries -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10623 , http://hdl.handle.net/10948/d1011130 , Estuarine ecology , Estuaries -- South Africa
- Description: Estuaries are intrinsically complex and dynamic ecosystems that display marked spatial and temporal variability. Because estuaries are situated at the receiving end of catchment activities, they are at particular risk of alterations to their natural complexity. The overarching objective of this study was to gain an overview of the abiotic conditions and biotic response of the Goukamma Estuary, a small temporarily open/closed estuary (TOCE) which is situated in a relatively undisturbed catchment in the Southern Cape. Physico-chemical properties drive estuarine ecology, and together with biological indicators, are commonly assessed to determine the present status of an estuary. During the study, physico-chemical parameters reflected great spatial and temporal variability in response to the mouth state over a 13 month period. Parameters ranged within expected limits, as proposed by the conceptual model for water quality of TOCE’s (Snow and Taljaard 2007). Of particular importance was the prominent occurrence of salinity stratification and hypoxic conditions (dissolved oxygen [DO] < 3 mg l-1) during both open and closed mouth states. Data indicated that in the wide and shallow lower reaches, weak stratification gradients were present and oxygenated conditions (DO > 6 mg l-1) were maintained throughout the water column mainly by wind and tidal action. However, stratification increased towards the deeper, channel-like middle and upper reaches of the estuary, followed by a significant reduction in bottom DO concentrations and development of hypoxia and anoxia. Bottom water hypoxia commonly occurs in microtidal estuaries due to the limited influence of mixing forces, mainly by wind and tidal action. The Goukamma Estuary is a channel-like microtidal estuary where stratification effectively limited oxygenation of the bottom water which resulted in frequent occurrence of bottom water hypoxia. During June 2010 when the highest local rainfall (75 mm) was recorded for the region, salinity and DO data showed that this amount of rainfall was insignificant as it did not replenish the water column of oxygen. Only the surface 0.5 m layer was fresh and oxygenated while below this, the water column was completely hypoxic. In an unimpacted state, the Goukamma Estuary is a blackwater system and is expected to be nutrient poor; however, farming activities in the catchment have resulted in elevated nutrient concentrations. This study showed that significantly higher nutrient concentrations were measured in the middle and upper reaches of the estuary, adjacent to cattle farms situated in the floodplain of these reaches. Nutrient concentrations represented mesotrophic (dissolved inorganic nitrogen [DIN] > 500 μg l-1) to eutrophic conditions (dissolved inorganic phosphorus [DIP] > 25 μg l-1). Nutrient input stimulated phytoplankton to attain a significantly high biomass, ranging between 0.3 – 112 μg l-1 (~ 7.7 ± 1.3 μg l-1; n = 128) and 0.8 – 289 μg l-1 (~ 21.1 ± 4.4 μg l-1; n = 80) during the open and closed states, respectively. High organic loads are associated with high oxygen demands which consequently result in hypoxia following decomposition. Exacerbated by natural salinity stratification which effectively limits oxygenation of the water column, unnaturally high nutrient concentrations and coinciding organic loads place the estuary at particular risk of degradation. This study captured key patterns and processes by quantifying salinity, oxygen and nutrient concentrations in addition to biological indicators (phytoplankton biomass and community composition). Considering possible budget constraints, it is recommended that monthly salinity and oxygen concentrations should be monitored as well as seasonal nutrient concentrations. It is also recommended that riparian buffer zones should be established in the middle and upper reaches of the estuary, as these vegetation buffers have been well documented to contribute to nutrient attenuation and improved water quality from agricultural run-off.
- Full Text:
- Date Issued: 2012
- Authors: Kaselowski, Tanja
- Date: 2012
- Subjects: Estuarine ecology , Estuaries -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10623 , http://hdl.handle.net/10948/d1011130 , Estuarine ecology , Estuaries -- South Africa
- Description: Estuaries are intrinsically complex and dynamic ecosystems that display marked spatial and temporal variability. Because estuaries are situated at the receiving end of catchment activities, they are at particular risk of alterations to their natural complexity. The overarching objective of this study was to gain an overview of the abiotic conditions and biotic response of the Goukamma Estuary, a small temporarily open/closed estuary (TOCE) which is situated in a relatively undisturbed catchment in the Southern Cape. Physico-chemical properties drive estuarine ecology, and together with biological indicators, are commonly assessed to determine the present status of an estuary. During the study, physico-chemical parameters reflected great spatial and temporal variability in response to the mouth state over a 13 month period. Parameters ranged within expected limits, as proposed by the conceptual model for water quality of TOCE’s (Snow and Taljaard 2007). Of particular importance was the prominent occurrence of salinity stratification and hypoxic conditions (dissolved oxygen [DO] < 3 mg l-1) during both open and closed mouth states. Data indicated that in the wide and shallow lower reaches, weak stratification gradients were present and oxygenated conditions (DO > 6 mg l-1) were maintained throughout the water column mainly by wind and tidal action. However, stratification increased towards the deeper, channel-like middle and upper reaches of the estuary, followed by a significant reduction in bottom DO concentrations and development of hypoxia and anoxia. Bottom water hypoxia commonly occurs in microtidal estuaries due to the limited influence of mixing forces, mainly by wind and tidal action. The Goukamma Estuary is a channel-like microtidal estuary where stratification effectively limited oxygenation of the bottom water which resulted in frequent occurrence of bottom water hypoxia. During June 2010 when the highest local rainfall (75 mm) was recorded for the region, salinity and DO data showed that this amount of rainfall was insignificant as it did not replenish the water column of oxygen. Only the surface 0.5 m layer was fresh and oxygenated while below this, the water column was completely hypoxic. In an unimpacted state, the Goukamma Estuary is a blackwater system and is expected to be nutrient poor; however, farming activities in the catchment have resulted in elevated nutrient concentrations. This study showed that significantly higher nutrient concentrations were measured in the middle and upper reaches of the estuary, adjacent to cattle farms situated in the floodplain of these reaches. Nutrient concentrations represented mesotrophic (dissolved inorganic nitrogen [DIN] > 500 μg l-1) to eutrophic conditions (dissolved inorganic phosphorus [DIP] > 25 μg l-1). Nutrient input stimulated phytoplankton to attain a significantly high biomass, ranging between 0.3 – 112 μg l-1 (~ 7.7 ± 1.3 μg l-1; n = 128) and 0.8 – 289 μg l-1 (~ 21.1 ± 4.4 μg l-1; n = 80) during the open and closed states, respectively. High organic loads are associated with high oxygen demands which consequently result in hypoxia following decomposition. Exacerbated by natural salinity stratification which effectively limits oxygenation of the water column, unnaturally high nutrient concentrations and coinciding organic loads place the estuary at particular risk of degradation. This study captured key patterns and processes by quantifying salinity, oxygen and nutrient concentrations in addition to biological indicators (phytoplankton biomass and community composition). Considering possible budget constraints, it is recommended that monthly salinity and oxygen concentrations should be monitored as well as seasonal nutrient concentrations. It is also recommended that riparian buffer zones should be established in the middle and upper reaches of the estuary, as these vegetation buffers have been well documented to contribute to nutrient attenuation and improved water quality from agricultural run-off.
- Full Text:
- Date Issued: 2012
Phytoplankton associated with mesoscale eddies in the Mozambique Channel
- Authors: O'Reilly, Bevan James
- Date: 2012
- Subjects: Mozambique Channel. , Phytoplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10622 , http://hdl.handle.net/10948/d1010967 , Mozambique Channel. , Phytoplankton
- Description: The study undertaken was an attempt to provide information on the effect that oceanographic features common in the Mozambique Channel have on primary production. Oligotrophic conditions dominated the Mozambique Channel at the time of sampling and the introduction of nutrients into the euphotic zone by upwelling processes were identified as cyclonic eddies. Differences in physico-chemical variables between surface and F-max across all sites proved to be stronger than the physico-chemical variables between 4 grouped oceanographic features. This was revealed by stronger variations in phytoplankton community structure and chlorophyll a concentration between surface and F-max compared to oceanographic features sampled. One of the hypotheses presented for the study was that diatoms would dominate phytoplankton communities within a cyclonic eddy. This was not the case as the coccolithophorid, Emiliania huxleyi Lohmann (Hay and Mohler 1967) dominated F-max and surface water in the cyclonic eddies and most other sites. Phytoplankton community structure did not differ significantly between the oceanographic features sampled which contradicted another one of hypotheses presented in the study. Chlorophyll a concentration in surface water of the cyclonic eddies was significantly higher than in surface waters within the anti-cyclonic eddy. F-max was not significantly different in phytoplankton biomass between these two system types. The cyclonic eddies and anti-cyclone had similar phytoplankton diversity which did not verify the hypothesis that there would be less phytoplankton species diversity within cyclonic eddies compared to the anti-cyclonic eddy. Phytoplankton community structure differed between F-max (depth at which maximum chlorophyll a is found) and the surface. This phytoplankton community difference was linked to differences in physico-chemical variables between the two depths. The diatoms Thalassionema nitzschioides, Pseudo-nitzschia sp.A, Pseudo-nitzschia sp.B, Thalassiosira sp.C, Thalassiosira sp.E, Bacteriastrum furcatum, Guinardia cylindrus, Nitzschia closterium, Hemiaulus hauckii, and Nitzschia braarudii revealed the only discernible ecological similarity amongst phytoplankton species across all sites and depths. This is important as it revealed that these species were regularly found occupying similar depths and potentially similar physico-chemical ranges in the water column which suggest these diatom species responded to a dominant source of variation. Distribution patterns of species and of ecologically defined groups support the hypothesis that diatom species and assemblages are good indicators of the changing character of an upwelling system. These statements lead to the assumption that the diatom grouping found in this study indicates areas of upwelling where water temperatures are reduced and nutrients are more readily available. One must keep in mind that ordination techniques are only descriptive and no significance is tested. The coccolithophorid D. anthos and the dinoflagellate Phalacroma spp. were noted as being most dissimilar to all other phytoplankton species with regards to their position in the water column and their response to physico-chemical variables. Finally, the dominance of E. huxleyi in the Mozambique Channel during November/December of 2009 reveals the potential vulnerability of phytoplankton in the channel to ocean acidification.
- Full Text:
- Date Issued: 2012
- Authors: O'Reilly, Bevan James
- Date: 2012
- Subjects: Mozambique Channel. , Phytoplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10622 , http://hdl.handle.net/10948/d1010967 , Mozambique Channel. , Phytoplankton
- Description: The study undertaken was an attempt to provide information on the effect that oceanographic features common in the Mozambique Channel have on primary production. Oligotrophic conditions dominated the Mozambique Channel at the time of sampling and the introduction of nutrients into the euphotic zone by upwelling processes were identified as cyclonic eddies. Differences in physico-chemical variables between surface and F-max across all sites proved to be stronger than the physico-chemical variables between 4 grouped oceanographic features. This was revealed by stronger variations in phytoplankton community structure and chlorophyll a concentration between surface and F-max compared to oceanographic features sampled. One of the hypotheses presented for the study was that diatoms would dominate phytoplankton communities within a cyclonic eddy. This was not the case as the coccolithophorid, Emiliania huxleyi Lohmann (Hay and Mohler 1967) dominated F-max and surface water in the cyclonic eddies and most other sites. Phytoplankton community structure did not differ significantly between the oceanographic features sampled which contradicted another one of hypotheses presented in the study. Chlorophyll a concentration in surface water of the cyclonic eddies was significantly higher than in surface waters within the anti-cyclonic eddy. F-max was not significantly different in phytoplankton biomass between these two system types. The cyclonic eddies and anti-cyclone had similar phytoplankton diversity which did not verify the hypothesis that there would be less phytoplankton species diversity within cyclonic eddies compared to the anti-cyclonic eddy. Phytoplankton community structure differed between F-max (depth at which maximum chlorophyll a is found) and the surface. This phytoplankton community difference was linked to differences in physico-chemical variables between the two depths. The diatoms Thalassionema nitzschioides, Pseudo-nitzschia sp.A, Pseudo-nitzschia sp.B, Thalassiosira sp.C, Thalassiosira sp.E, Bacteriastrum furcatum, Guinardia cylindrus, Nitzschia closterium, Hemiaulus hauckii, and Nitzschia braarudii revealed the only discernible ecological similarity amongst phytoplankton species across all sites and depths. This is important as it revealed that these species were regularly found occupying similar depths and potentially similar physico-chemical ranges in the water column which suggest these diatom species responded to a dominant source of variation. Distribution patterns of species and of ecologically defined groups support the hypothesis that diatom species and assemblages are good indicators of the changing character of an upwelling system. These statements lead to the assumption that the diatom grouping found in this study indicates areas of upwelling where water temperatures are reduced and nutrients are more readily available. One must keep in mind that ordination techniques are only descriptive and no significance is tested. The coccolithophorid D. anthos and the dinoflagellate Phalacroma spp. were noted as being most dissimilar to all other phytoplankton species with regards to their position in the water column and their response to physico-chemical variables. Finally, the dominance of E. huxleyi in the Mozambique Channel during November/December of 2009 reveals the potential vulnerability of phytoplankton in the channel to ocean acidification.
- Full Text:
- Date Issued: 2012
Population dynamics of the white shark, Carcharodon carcharias, at Mossel Bay, South Africa
- Authors: Ryklief, Rabiah
- Date: 2012
- Subjects: White shark -- South Africa -- Mossel Bay , Sharks -- South Africa -- Mossel Bay
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10717 , http://hdl.handle.net/10948/d1012077 , White shark -- South Africa -- Mossel Bay , Sharks -- South Africa -- Mossel Bay
- Description: Mossel Bay is internationally recognised as one of the centres of abundance of white sharks in South Africa. During 2008 – 2010 there were four sites within the bay i.e. Seal Island, Hartenbos, Kleinbrak and Grootbrak, which were sampled to gain insight into the population dynamics of this species. Currently, life history information on white sharks in this area is limited. This study used a combination of mark-recapture using photographic identification techniques and sight per unit effort methods. Inter-annual, seasonal and spatial patterns in abundance are assessed. The effects of environmental parameters on abundance are also investigated. Photographic identification techniques were employed to identify unique individuals within the sampled population. This modified mark-recapture approach is therefore non-invasive and cost-effective. Open population POPAN parameterization was used to analyse the data in software program MARK. The total population was estimated at 389 sharks (351 – 428; 95 percent CI). Over the three year period, a marginal (yet non-significant) decline in numbers was observed, in terms of both monthly and seasonal population estimates. Sightings per unit effort data were collected during sampling trips. The relative abundance and body size composition of white sharks demonstrated significant spatial and seasonal variation. The highest and lowest relative abundance was observed at Seal Island and Hartenbos, respectively, and is likely attributed to prey availability. Although white sharks were present year-round in Mossel Bay, the highest relative abundance occurred during summer and the lowest relative abundance occurred during spring. White sharks were grouped into three main size classes based on estimated total length (TL): Young of the year (YOY) (125 – 174cm), juvenile (175 – 324cm) and adult (325 – 524cm). YOY white sharks were most prevalent at Grootbrak, with juvenile and adult individuals concentrating at Seal Island. Although most size classes were present throughout the year, seasonal differences were observed. YOY individuals were most abundant in the autumn months, juvenile size-classes appeared to concentrate in the study area during winter, and the adult individuals were most abundant in the spring months. Overall, there was a high concentration of white sharks ranging in size between 175 – 324cm TL, and it was thus hypothesised that Mossel Bay represents an interim nursery or grow out area for white sharks in South Africa. Data collected from 2008 and 2009 was used to investigate the relationship between specific environmental parameters, i.e. sea surface temperature and vertical water clarity, in relation to the relative abundance of white sharks. Sea surface temperature and vertical water clarity observed in this study ranged from 9.3 - 22.7°C and 0 – 10m, respectively. Sea surface temperature did not have a significant influence on the relative abundance of white sharks and this may be attributed to the thermoregulatory capacity of the species. Vertical water clarity, however, did significantly influence the relative abundance. Furthermore, the combined effect of site and season significantly influenced the relative abundance of white sharks and is probably linked to the distribution and abundance of inshore prey resources.
- Full Text:
- Date Issued: 2012
- Authors: Ryklief, Rabiah
- Date: 2012
- Subjects: White shark -- South Africa -- Mossel Bay , Sharks -- South Africa -- Mossel Bay
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10717 , http://hdl.handle.net/10948/d1012077 , White shark -- South Africa -- Mossel Bay , Sharks -- South Africa -- Mossel Bay
- Description: Mossel Bay is internationally recognised as one of the centres of abundance of white sharks in South Africa. During 2008 – 2010 there were four sites within the bay i.e. Seal Island, Hartenbos, Kleinbrak and Grootbrak, which were sampled to gain insight into the population dynamics of this species. Currently, life history information on white sharks in this area is limited. This study used a combination of mark-recapture using photographic identification techniques and sight per unit effort methods. Inter-annual, seasonal and spatial patterns in abundance are assessed. The effects of environmental parameters on abundance are also investigated. Photographic identification techniques were employed to identify unique individuals within the sampled population. This modified mark-recapture approach is therefore non-invasive and cost-effective. Open population POPAN parameterization was used to analyse the data in software program MARK. The total population was estimated at 389 sharks (351 – 428; 95 percent CI). Over the three year period, a marginal (yet non-significant) decline in numbers was observed, in terms of both monthly and seasonal population estimates. Sightings per unit effort data were collected during sampling trips. The relative abundance and body size composition of white sharks demonstrated significant spatial and seasonal variation. The highest and lowest relative abundance was observed at Seal Island and Hartenbos, respectively, and is likely attributed to prey availability. Although white sharks were present year-round in Mossel Bay, the highest relative abundance occurred during summer and the lowest relative abundance occurred during spring. White sharks were grouped into three main size classes based on estimated total length (TL): Young of the year (YOY) (125 – 174cm), juvenile (175 – 324cm) and adult (325 – 524cm). YOY white sharks were most prevalent at Grootbrak, with juvenile and adult individuals concentrating at Seal Island. Although most size classes were present throughout the year, seasonal differences were observed. YOY individuals were most abundant in the autumn months, juvenile size-classes appeared to concentrate in the study area during winter, and the adult individuals were most abundant in the spring months. Overall, there was a high concentration of white sharks ranging in size between 175 – 324cm TL, and it was thus hypothesised that Mossel Bay represents an interim nursery or grow out area for white sharks in South Africa. Data collected from 2008 and 2009 was used to investigate the relationship between specific environmental parameters, i.e. sea surface temperature and vertical water clarity, in relation to the relative abundance of white sharks. Sea surface temperature and vertical water clarity observed in this study ranged from 9.3 - 22.7°C and 0 – 10m, respectively. Sea surface temperature did not have a significant influence on the relative abundance of white sharks and this may be attributed to the thermoregulatory capacity of the species. Vertical water clarity, however, did significantly influence the relative abundance. Furthermore, the combined effect of site and season significantly influenced the relative abundance of white sharks and is probably linked to the distribution and abundance of inshore prey resources.
- Full Text:
- Date Issued: 2012
Population dynamics of the Zuurberg Cycad and the predicted impact of climate change
- Authors: Singh, Karishma
- Date: 2012
- Subjects: Cycads -- South Africa -- Eastern Cape , Encephalartos -- South Africa -- Eastern Cape , Climate change -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10633 , http://hdl.handle.net/10948/d1012857
- Description: Cycads first appeared about 300 million years ago and historical data indicates that they survived fluctuations of global temperature and carbon dioxide concentrations and reached peak abundance during periods where temperature and carbon dioxide concentrations were much higher than the present conditions as well as the predicted increased levels. With Africa being one of the most vulnerable regions to climate change and in the absence of an evaluation of predicted impacts of climate change on cycads, this study aims to contribute to our understanding of responses of Encephalartos longifolius to increased temperature. Encephalartos longifolius (Jacq.) Lehm is an Eastern Cape endemic and like most cycads has been around for millions of years with very little change to its basic structure. Photosynthetic rates showed E.longifolius seedlings have C3 photosynthesis and even under stress they do not switch over to CAM photosynthesis. The photosynthetic rates of seedlings showed a typical C3 -plant type response under elevated carbon dioxide levels. Increased temperatures could be detrimental to the species but coupled with elevated carbon dioxide levels the growth of Encephalartos longifolius are postulated to outweigh the negative impacts of increased temperatures. Whilst climatic conditions in the Eastern Cape might not impact the abundance of Encephalartos longifolius, the species however is declining rapidly to the present near-threatened status. Demographic studies revealed a high percentage of juvenile numbers in the wild; however juvenile plants are impacted on by animals thereby jeopardizing their survival. Adult plants are heavily impacted on by animals; this reduces the probability of new offspring being produced. Cycads are also very slow - growing which is the primary cause of their ruin in the wild. Encephalartos longifolius grows at just over approximately 1 cm per year with growth being more rapid in the juvenile plants. Once juvenile plants reach approximately 60 cm they stop growing in diameter but only get taller. Seed germination is also a very slow process with an optimum temperature of 28°C and a growth medium of at least 50 percent moisture. Regardless of the Eastern Cape predicted to become the hottest province in South Africa as a result of climate change, cycads will be able to adapt to the changing environment and conservation plans should focus on animal and human impacts that are the major force causing decreasing abundance of Encephalartos longifolius in the wild.
- Full Text:
- Date Issued: 2012
- Authors: Singh, Karishma
- Date: 2012
- Subjects: Cycads -- South Africa -- Eastern Cape , Encephalartos -- South Africa -- Eastern Cape , Climate change -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10633 , http://hdl.handle.net/10948/d1012857
- Description: Cycads first appeared about 300 million years ago and historical data indicates that they survived fluctuations of global temperature and carbon dioxide concentrations and reached peak abundance during periods where temperature and carbon dioxide concentrations were much higher than the present conditions as well as the predicted increased levels. With Africa being one of the most vulnerable regions to climate change and in the absence of an evaluation of predicted impacts of climate change on cycads, this study aims to contribute to our understanding of responses of Encephalartos longifolius to increased temperature. Encephalartos longifolius (Jacq.) Lehm is an Eastern Cape endemic and like most cycads has been around for millions of years with very little change to its basic structure. Photosynthetic rates showed E.longifolius seedlings have C3 photosynthesis and even under stress they do not switch over to CAM photosynthesis. The photosynthetic rates of seedlings showed a typical C3 -plant type response under elevated carbon dioxide levels. Increased temperatures could be detrimental to the species but coupled with elevated carbon dioxide levels the growth of Encephalartos longifolius are postulated to outweigh the negative impacts of increased temperatures. Whilst climatic conditions in the Eastern Cape might not impact the abundance of Encephalartos longifolius, the species however is declining rapidly to the present near-threatened status. Demographic studies revealed a high percentage of juvenile numbers in the wild; however juvenile plants are impacted on by animals thereby jeopardizing their survival. Adult plants are heavily impacted on by animals; this reduces the probability of new offspring being produced. Cycads are also very slow - growing which is the primary cause of their ruin in the wild. Encephalartos longifolius grows at just over approximately 1 cm per year with growth being more rapid in the juvenile plants. Once juvenile plants reach approximately 60 cm they stop growing in diameter but only get taller. Seed germination is also a very slow process with an optimum temperature of 28°C and a growth medium of at least 50 percent moisture. Regardless of the Eastern Cape predicted to become the hottest province in South Africa as a result of climate change, cycads will be able to adapt to the changing environment and conservation plans should focus on animal and human impacts that are the major force causing decreasing abundance of Encephalartos longifolius in the wild.
- Full Text:
- Date Issued: 2012
Propagation and stress physiology of selected Subtropical Thicket species : towards increasing biodiversity at rehabilitation sites
- Authors: Louw, Merika
- Date: 2012
- Subjects: Biodiversity conservation , Plant physiology , Stress (Physiology) , Plant propagation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10758 , http://hdl.handle.net/10948/d1021115
- Description: Sundays Thicket and Spekboomveld vegetation in the Eastern Cape have experienced intensive and extensive degradation due to over-browsing by domestic stock. The Subtropical Thicket Restoration Project aims to take advantage of the high carbon sequestration potential of Portulacaria afra (Spekboom) and other Thicket species, to rehabilitate degraded Thicket by restoring biodiversity and ecosystem services, create job opportunities and socio-economic upliftment in local communities, and promote the trade of carbon credits generated by planting and „farming‟ with Spekboom truncheons, rather than domestic stock. Plant material (seeds and length of stem) was sourced from the farm Krompoort, outside Uitenhage in the Eastern Cape. The effectiveness of four different rooting media i.e. plain pool filter sand and 1:1 mixtures of pool filter sand with perlite, potting soil and Thicket soil, on the rooting of ten Thicket species, were tested. Species with the greatest percentage strike and mean root length on stem cuttings were succulent species, Crassula ovata (84 percent strike) and Portulacaria afra (97 percent), as was expected. The application of rooting hormone Seradix© No. 3 did not significantly promote cutting strike or increase mean root length in C. ovata and P. afra. Woody canopy shrub species with the greatest cutting strike and mean root length, overall, were Rhigozum obovatum (24 percent), Lycium cinereum and L. oxycarpum (21 percent), and Searsia longispina (19 percent). These species, as well as Grewia robusta (4 percent), are considered „easy-to-root‟ species, or of sufficient functional value in terms of their spinescence, flower and fruit production, and soil-binding capabilities. Very low percentage strike (<1 percent) and mean root length were achieved in Azima tetracantha, Carissa bispinosa and Gymnosporia polyacantha subsp. polyacantha. These species are considered unsuitable for propagation for rehabilitation purposes. Crassula ovata, L. cinereum, L. oxycarpum, P. afra and S. longispina cuttings produced longer roots when planted in Thicket soil, the same having been found in R. obovatum cuttings planted in perlite. Thicket soil was, therefore, best at promoting cutting strike and root growth in „easy-to-root‟ species. Plain pool filter sand was the only medium in which A. tetracantha, C. bispinosa and G. robusta, cuttings rooted, and perlite the only medium in which G. polyacantha subsp. polyacantha cuttings rooted. Potting soil did not promote significant cutting strike or root growth in any of the species tested. Physiological variables i.e. photosynthetic efficiency (chlorophyll a fluorescence, Fv/Fm) and stomatal conductance (mmol H2O m-2 s-1) were measured for ten Thicket species, including Portulacaria afra. Control plants were watered well once a week, and treatment plants were dried out for 30 days, rewatered on the 30th day and their recovery from drought stress monitored for a further 17 days. Species that responded poorly to drought stress were Gymnosporia buxifolia and Putterlickia pyracantha. In addition to Portulacaria afra, species that showed the fastest recovery and resprout after rewatering, were: Crassula ovata, Ehretia rigida, Grewia robusta, Lycium ferocissimum, Rhigozum obovatum and Searsia longispina. These species produced the smallest decline in volumetric moisture content of soil, and had the lowest decline in photosynthetic efficiency and stomatal conductance during simulated drought. Unlike C. ovata and P. afra, which are CAM or C3-CAM switching species, mortality of transplants will most likely be high, if not total, during transplantation, as this study was done at lower light and temperature, and higher humidity levels than experienced at rehabilitation sites. This study has shown that the reintroduction of propagated woody canopy shrubs and trees into degraded Thicket sites does not appear to be a practical or economical method of actively restoring biodiversity to rehabilitation sites. As woody climax species have been shown to return to sites planted with Spekboom truncheons through „natural regeneration‟ within approximately 50 years, future research efforts should focus on optimising restoration site selection and planting techniques in order to maximize carbon sequestration potential of planted truncheons, which will, in the long term, result in an environment that can support regeneration of the biodiversity to something resembling intact Thicket.
- Full Text:
- Date Issued: 2012
- Authors: Louw, Merika
- Date: 2012
- Subjects: Biodiversity conservation , Plant physiology , Stress (Physiology) , Plant propagation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10758 , http://hdl.handle.net/10948/d1021115
- Description: Sundays Thicket and Spekboomveld vegetation in the Eastern Cape have experienced intensive and extensive degradation due to over-browsing by domestic stock. The Subtropical Thicket Restoration Project aims to take advantage of the high carbon sequestration potential of Portulacaria afra (Spekboom) and other Thicket species, to rehabilitate degraded Thicket by restoring biodiversity and ecosystem services, create job opportunities and socio-economic upliftment in local communities, and promote the trade of carbon credits generated by planting and „farming‟ with Spekboom truncheons, rather than domestic stock. Plant material (seeds and length of stem) was sourced from the farm Krompoort, outside Uitenhage in the Eastern Cape. The effectiveness of four different rooting media i.e. plain pool filter sand and 1:1 mixtures of pool filter sand with perlite, potting soil and Thicket soil, on the rooting of ten Thicket species, were tested. Species with the greatest percentage strike and mean root length on stem cuttings were succulent species, Crassula ovata (84 percent strike) and Portulacaria afra (97 percent), as was expected. The application of rooting hormone Seradix© No. 3 did not significantly promote cutting strike or increase mean root length in C. ovata and P. afra. Woody canopy shrub species with the greatest cutting strike and mean root length, overall, were Rhigozum obovatum (24 percent), Lycium cinereum and L. oxycarpum (21 percent), and Searsia longispina (19 percent). These species, as well as Grewia robusta (4 percent), are considered „easy-to-root‟ species, or of sufficient functional value in terms of their spinescence, flower and fruit production, and soil-binding capabilities. Very low percentage strike (<1 percent) and mean root length were achieved in Azima tetracantha, Carissa bispinosa and Gymnosporia polyacantha subsp. polyacantha. These species are considered unsuitable for propagation for rehabilitation purposes. Crassula ovata, L. cinereum, L. oxycarpum, P. afra and S. longispina cuttings produced longer roots when planted in Thicket soil, the same having been found in R. obovatum cuttings planted in perlite. Thicket soil was, therefore, best at promoting cutting strike and root growth in „easy-to-root‟ species. Plain pool filter sand was the only medium in which A. tetracantha, C. bispinosa and G. robusta, cuttings rooted, and perlite the only medium in which G. polyacantha subsp. polyacantha cuttings rooted. Potting soil did not promote significant cutting strike or root growth in any of the species tested. Physiological variables i.e. photosynthetic efficiency (chlorophyll a fluorescence, Fv/Fm) and stomatal conductance (mmol H2O m-2 s-1) were measured for ten Thicket species, including Portulacaria afra. Control plants were watered well once a week, and treatment plants were dried out for 30 days, rewatered on the 30th day and their recovery from drought stress monitored for a further 17 days. Species that responded poorly to drought stress were Gymnosporia buxifolia and Putterlickia pyracantha. In addition to Portulacaria afra, species that showed the fastest recovery and resprout after rewatering, were: Crassula ovata, Ehretia rigida, Grewia robusta, Lycium ferocissimum, Rhigozum obovatum and Searsia longispina. These species produced the smallest decline in volumetric moisture content of soil, and had the lowest decline in photosynthetic efficiency and stomatal conductance during simulated drought. Unlike C. ovata and P. afra, which are CAM or C3-CAM switching species, mortality of transplants will most likely be high, if not total, during transplantation, as this study was done at lower light and temperature, and higher humidity levels than experienced at rehabilitation sites. This study has shown that the reintroduction of propagated woody canopy shrubs and trees into degraded Thicket sites does not appear to be a practical or economical method of actively restoring biodiversity to rehabilitation sites. As woody climax species have been shown to return to sites planted with Spekboom truncheons through „natural regeneration‟ within approximately 50 years, future research efforts should focus on optimising restoration site selection and planting techniques in order to maximize carbon sequestration potential of planted truncheons, which will, in the long term, result in an environment that can support regeneration of the biodiversity to something resembling intact Thicket.
- Full Text:
- Date Issued: 2012
Quantitative evaluation of starch determination in feed samples using Near Infra-red Reflectance
- Authors: Mapekula, Nwabisa Nolwazi
- Date: 2012
- Subjects: Near infrared spectroscopy , Animal feeding , Feeds -- Enzyme content
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10421 , http://hdl.handle.net/10948/d1015617
- Description: In an attempt to reduce the costs and turn around times experienced with outsourcing starch analysis in finished feed products, the company decided to invest in a NIR instrument to carry out such analyses in house. The particular instrument purchased by the company comes with a build in calibration for specific finished feed products and the main objective of this investigation was to evaluate whether the instrumentation and build in calibration gives reliable analyses of a finished poultry feed. The results obtained showed that : - The NIR results obtained have a positive bias compared to the theoretical (formulation specified value) and also to the value obtained by enzymatic starch analysis. - Despite the positive bias, the starch values were well within the allowable limits - Repeatability measurements on the data generated by two different analysts showed that while the percentage relative standard deviations obtained (< 1.0 percent) were well within the company specifications of percentage RSD < 5.0 percent, the inter sample repeatability showed small, but significant variation. - The results for intermediate precision showed that there is no statistically significant difference between the results obtained by two different analysts, nor was there any difference in the results of the same samples analysed at different time periods. - Reproducibility could not be evaluated due to the lack of another instrument within the company that were similarly set up as the instrument used for the investigation. This investigation has shown that, given the restrictions enforced by the build incalibration of the NIR instrument, the use of NIR for the analyses of the finished feed product is valid, but will require that careful attention be paid to data collection procedures.
- Full Text:
- Date Issued: 2012
- Authors: Mapekula, Nwabisa Nolwazi
- Date: 2012
- Subjects: Near infrared spectroscopy , Animal feeding , Feeds -- Enzyme content
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10421 , http://hdl.handle.net/10948/d1015617
- Description: In an attempt to reduce the costs and turn around times experienced with outsourcing starch analysis in finished feed products, the company decided to invest in a NIR instrument to carry out such analyses in house. The particular instrument purchased by the company comes with a build in calibration for specific finished feed products and the main objective of this investigation was to evaluate whether the instrumentation and build in calibration gives reliable analyses of a finished poultry feed. The results obtained showed that : - The NIR results obtained have a positive bias compared to the theoretical (formulation specified value) and also to the value obtained by enzymatic starch analysis. - Despite the positive bias, the starch values were well within the allowable limits - Repeatability measurements on the data generated by two different analysts showed that while the percentage relative standard deviations obtained (< 1.0 percent) were well within the company specifications of percentage RSD < 5.0 percent, the inter sample repeatability showed small, but significant variation. - The results for intermediate precision showed that there is no statistically significant difference between the results obtained by two different analysts, nor was there any difference in the results of the same samples analysed at different time periods. - Reproducibility could not be evaluated due to the lack of another instrument within the company that were similarly set up as the instrument used for the investigation. This investigation has shown that, given the restrictions enforced by the build incalibration of the NIR instrument, the use of NIR for the analyses of the finished feed product is valid, but will require that careful attention be paid to data collection procedures.
- Full Text:
- Date Issued: 2012
Recolonisation of the Robberg Peninsula by the Cape Fur Seal Arctocephalus pusillus pusillus and its prey preferences
- Authors: Huisamen, Johan
- Date: 2012
- Subjects: South African fur seal -- South Africa -- Plettenberg Bay , South African fur seal -- Food -- South Africa -- Plettenberg Bay
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10745 , http://hdl.handle.net/10948/d1006438 , South African fur seal -- South Africa -- Plettenberg Bay , South African fur seal -- Food -- South Africa -- Plettenberg Bay
- Description: The Cape fur seal Arctocephalus pusillus pusillus colony at the Robberg Peninsula, Plettenberg Bay, on the south-east coast of South Africa, was driven to extirpation by indiscriminate harvesting by the late 1800s and seals only began to recolonise this site in the 1990s. This study describes the recolonisation process from 2000 to 2009, exploring within- and between-year variation in the number of seals using the site. Numbers increased over the study period from less than 300 animals to over 3 100. Year and month were important in explaining variability in seal counts, whereas sea condition, time of day and lunar phase had minimal explanatory power. Within-year variation in seal counts decreased during the study period, which may indicate an increasing proportion of resident (as opposed to transient) seals in the colony. However, the colony is currently still in a transition phase with a low ratio of breeding to non-breeding animals and low numbers of pups born on the colony (currently still < 100 per year). The influx of seals to the Robberg area may be associated with an increase in prey availability in the area. The relative protection afforded by the Nature Reserve status of the Robberg Peninsula and the existence of a Marine Protected Area adjacent to it are likely to contribute to the growth of this colony. However, human interference associated with fishing and/or ecotourism on the Peninsula may prevent the colony from developing into a breeding colony. Faecal (scat) sampling was employed to study the diet of this increasing seal population at Robberg. Species composition and size of prey were determined, temporal variation in the diet was explored, and the potential for competition between seals and the fisheries around Plettenberg Bay was investigated. Of the 445 scats collected, 90 % contained hard prey remains. These comprised of 3 127 identified otoliths representing 15 teleost prey species, 25 cephalopod beaks representing three 6 species and three feathers representing two bird species. The seals' most important prey species in terms of numerical abundance and frequency of occurrence in the diet were anchovy, sardine, horse mackerel, sand tongue-fish and shallow-water hake (in decreasing order of importance). The proportion of anchovy in the diet increased during the study period, while sardine decreased. Sardine was the only species that increased significantly in the diet during the upwelling season. Little evidence was found of direct competition between seals and linefisheries in Plettenberg Bay, both in terms of prey species composition and quantities consumed. Scat sampling in seals holds promise as a method to track long-term changes in prey species availability. The conservation and management of this colony are discussed in light of the research findings.
- Full Text:
- Date Issued: 2012
- Authors: Huisamen, Johan
- Date: 2012
- Subjects: South African fur seal -- South Africa -- Plettenberg Bay , South African fur seal -- Food -- South Africa -- Plettenberg Bay
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10745 , http://hdl.handle.net/10948/d1006438 , South African fur seal -- South Africa -- Plettenberg Bay , South African fur seal -- Food -- South Africa -- Plettenberg Bay
- Description: The Cape fur seal Arctocephalus pusillus pusillus colony at the Robberg Peninsula, Plettenberg Bay, on the south-east coast of South Africa, was driven to extirpation by indiscriminate harvesting by the late 1800s and seals only began to recolonise this site in the 1990s. This study describes the recolonisation process from 2000 to 2009, exploring within- and between-year variation in the number of seals using the site. Numbers increased over the study period from less than 300 animals to over 3 100. Year and month were important in explaining variability in seal counts, whereas sea condition, time of day and lunar phase had minimal explanatory power. Within-year variation in seal counts decreased during the study period, which may indicate an increasing proportion of resident (as opposed to transient) seals in the colony. However, the colony is currently still in a transition phase with a low ratio of breeding to non-breeding animals and low numbers of pups born on the colony (currently still < 100 per year). The influx of seals to the Robberg area may be associated with an increase in prey availability in the area. The relative protection afforded by the Nature Reserve status of the Robberg Peninsula and the existence of a Marine Protected Area adjacent to it are likely to contribute to the growth of this colony. However, human interference associated with fishing and/or ecotourism on the Peninsula may prevent the colony from developing into a breeding colony. Faecal (scat) sampling was employed to study the diet of this increasing seal population at Robberg. Species composition and size of prey were determined, temporal variation in the diet was explored, and the potential for competition between seals and the fisheries around Plettenberg Bay was investigated. Of the 445 scats collected, 90 % contained hard prey remains. These comprised of 3 127 identified otoliths representing 15 teleost prey species, 25 cephalopod beaks representing three 6 species and three feathers representing two bird species. The seals' most important prey species in terms of numerical abundance and frequency of occurrence in the diet were anchovy, sardine, horse mackerel, sand tongue-fish and shallow-water hake (in decreasing order of importance). The proportion of anchovy in the diet increased during the study period, while sardine decreased. Sardine was the only species that increased significantly in the diet during the upwelling season. Little evidence was found of direct competition between seals and linefisheries in Plettenberg Bay, both in terms of prey species composition and quantities consumed. Scat sampling in seals holds promise as a method to track long-term changes in prey species availability. The conservation and management of this colony are discussed in light of the research findings.
- Full Text:
- Date Issued: 2012
Response of mangroves in South Africa to anthropogenic and natural impacts
- Hoppe-Speer, Sabine Clara-Lisa
- Authors: Hoppe-Speer, Sabine Clara-Lisa
- Date: 2012
- Subjects: Mangrove forests , Climatic changes , Forest resilience
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10630 , http://hdl.handle.net/10948/d1012123 , Mangrove forests , Climatic changes , Forest resilience
- Description: The total mangrove area cover in South Africa is 1631.7 ha, with the largest area cover in a few estuaries in the KwaZulu-Natal Province (1391.1 ha) and the remainder recorded in the Eastern Cape Province with 240.6 ha. This represents 0.05 percent of Africa‟s mangrove area cover and although small adds irreplaceable value to the biodiversity of South Africa. Mangroves are threatened by over-utilization through harvesting for firewood and building materials as well as excessive browsing and trampling by livestock. The objective of this study was to investigate the response of mangroves to different stressors from natural change as well as anthropogenic pressures. This was done by identifying pressures, measuring area cover, population structure and environmental parameters such as sediment characteristics. Mangroves in 17 estuaries along the east coast were investigated. Population structure and the area covered by mangroves in 2011/2012 were compared with data from the same area for 1999. Detailed studies were conducted in St. Lucia Estuary to investigate the response of mangroves to reduced tidal flooding; mangrove expansion at a latitudinal limit in a protected area at Nahoon Estuary was studied and the effect of cattle browsing on mangroves was measured at Nxaxo Estuary. The St. Lucia Estuary (28°S; 32°E) represented a unique study site as the mouth has been closed to the sea since 2002 and the mangrove habitats have been non-tidal. St. Lucia Estuary is both a Ramsar and World Heritage site and therefore understanding the response of mangroves to changes in the environment is important. In 2010 sediment characteristics and mangrove population structure were measured at four sites which were chosen to represent different salinity and water level conditions. The site fringing the main channel had the highest density of mangrove seedlings and saplings. The dry site had a lower density of mangroves with mostly only tall adult trees and few saplings. Mangrove tree height and density increased at sites with high sediment moisture and low surface sediment salinity. Few seedlings and saplings were found at sites with dry surface sediment and high salinity. Long term data are needed to assess the influence of mouth closure on recruitment and survival of the mangrove forest at St. Lucia Estuary; however this study has shown that sediment characteristics are unfavourable for mangrove growth at sites now characterized by a lack of tidal flooding. It is not known when exactly the mangroves were planted in Nahoon Estuary (32°S; 27° E), East London, but it is suspected that this was in the early 1970s. Avicennia marina (Forrsk.)Vierh. was planted first, followed a few years later by the planting of Bruguiera gymnorrhiza (L.) Lam. and Rhizophora mucronata (L.) among the larger A. marina trees. Surprisingly the mangrove population appears to be thriving and this study tested the hypothesis that mangroves have expanded and replaced salt marsh over a 33 year period. This study provides important information on mangroves growing at higher latitudes, where they were thought to not occur naturally due to lower annual average temperatures. It further provides insights on future scenarios of possible shifts in vegetation types due to climate change at one of the most southerly distribution sites worldwide. The expansion of mangroves was measured over a 33 year period (1978 - 2011) using past aerial photographs and Esri ArcGIS Desktop 10 software. In addition, field surveys were completed in 2011 to determine the population structure of the present mangrove forest and relate this to environmental conditions. The study showed that mangrove area cover increased linearly at a rate of 0.06 ha-1 expanding over a bare mudflat area, while the salt marsh area cover also increased (0.09 ha-1) but was found to be variable over time. The mangrove area is still small (< 2 ha) and at present no competition between mangroves and salt marsh can be deduced. Instead the area has the ability to maintain high biodiversity and biomass. Avicennia marina was the dominant mangrove species and had high recruitment (seedling density was 33 822 ± 16 364 ha-1) but only a few Bruguiera gymnorrhiza and Rhizophora mucronata individuals were found (< 10 adult trees). The site provides opportunities for studies on mangrove / salt marsh interactions in response to a changing climate at the most southern limit of mangrove distribution in Africa. This research has provided the baseline data, permanent quadrats and tagged trees to be used in future long-term monitoring of population growth and sediment characteristics. At Nxaxo Estuary (32°S; 28°E) the response of mangrove trees (Avicennia marina) to cattle browsing and trampling was investigated by using cattle exclusion plots. Exclusion plots were established by fencing in five 25 m2 quadrats and adjacent to each experimental quadrat a control quadrat (not fenced in, 25 m2) was set-up. Trees were tagged and measured annually from 2010 to 2012. Sediment salinity, pH, moisture, organic content, compaction as well as sediment particle size was also measured in each quadrat. Sediment characteristics did not vary between control and experimental plots but did show changes between the years. The mangrove trees in the cattle exclusion plots grew exponentially over a period of two years. There was a significant increase in mean plant height (5.41 ± 0.53 cm), crown volume (0.54 ± 0.01 m3) and crown diameter (7.09 ± 0.60 cm) from 2010 to 2012. Trees in the control plots had significantly lower growth (p < 0.05). There was a decrease in plant height (-0.07 ± 0.67cm1) and only small increases in crown volume (0.14 ± 0.1 m3) and crown diameter (2.03 ± 2.61 cm). The research showed that browsing on mangroves by cattle stunts growth and causes a shrubby appearance as a result of coppicing. The browsed trees were dwarfed with horizontal spreading of branches and intact foliage close to the ground while the plants in the cattle exclusion plots showed an increase in vertical growth and expansion. In the cattle exclusion plots there was a significantly higher percentage of flowering (67 percent) and fruiting (39 percent) trees in 2012 compared to the control sites where 34 percent of the plants were flowering and 5.4 percent of the plants carried immature propagules. Observations in the field also indicated that cattle had trampled a number of seedlings thus influencing mangrove survival. The study concluded that browsing changes the morphological structure of mangrove trees and reduces growth and seedling establishment. This is an additional stress that the mangroves are exposed to in rural areas where cattle are allowed to roam free. Seventeen permanently open estuaries provide habitat for mangrove forests along the former Transkei coast. This part of the Eastern Cape is mostly undeveloped and difficult to access. Mangrove area cover, species distribution, population structure and health of the mangrove habitat were compared with results from previous studies in 1982 and 1999. The mangrove Bruguiera gymnorrhiza had the densest stands and was widely distributed as it was present in 13 of the 17 estuaries. Avicennia marina was dominant in those estuaries which had the largest area cover of mangroves and was present in 10 estuaries, while Rhizophora mucronata was rare and only present in five estuaries. Anthropogenic and natural impacts were noted within the mangrove habitats in each of these estuaries. Harvesting of mangrove wood, livestock browsing and trampling and footpaths occurred in most of the estuaries (> 70 percent). It was observed that browsing on trees resulted in a clear browse-line and browsing on propagules mainly by goats resulted in reduced seedling establishment in most of the estuaries except those in protected areas. Mangroves had re-established in estuaries where they had been previously lost but mouth closure due to drought and sea storms resulted in the mass die back of mangroves in the Kobonqaba Estuary. There was a total loss of 31.5 ha in mangrove area cover in the last 30 years and this was a total reduction of 10.5 ha (11 percent) for every decade. This is high considering that the present total mangrove area cover is only 240.6 ha for all the Transkei estuaries. In this study it was concluded that the anthropogenic impacts such as livestock browsing and trampling as well as harvesting in these estuaries contributed most to the mangrove degradation as these are continuous pressures occurring over long periods and are expected to increase in future with increasing human population. Natural changes such as sea storms occur less frequently but could result in large scale destruction over shorter periods. Examples of these are mouth closure that result in mangrove mass mortality as well as strong floods which destroy forest by scouring of the banks.
- Full Text:
- Date Issued: 2012
- Authors: Hoppe-Speer, Sabine Clara-Lisa
- Date: 2012
- Subjects: Mangrove forests , Climatic changes , Forest resilience
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10630 , http://hdl.handle.net/10948/d1012123 , Mangrove forests , Climatic changes , Forest resilience
- Description: The total mangrove area cover in South Africa is 1631.7 ha, with the largest area cover in a few estuaries in the KwaZulu-Natal Province (1391.1 ha) and the remainder recorded in the Eastern Cape Province with 240.6 ha. This represents 0.05 percent of Africa‟s mangrove area cover and although small adds irreplaceable value to the biodiversity of South Africa. Mangroves are threatened by over-utilization through harvesting for firewood and building materials as well as excessive browsing and trampling by livestock. The objective of this study was to investigate the response of mangroves to different stressors from natural change as well as anthropogenic pressures. This was done by identifying pressures, measuring area cover, population structure and environmental parameters such as sediment characteristics. Mangroves in 17 estuaries along the east coast were investigated. Population structure and the area covered by mangroves in 2011/2012 were compared with data from the same area for 1999. Detailed studies were conducted in St. Lucia Estuary to investigate the response of mangroves to reduced tidal flooding; mangrove expansion at a latitudinal limit in a protected area at Nahoon Estuary was studied and the effect of cattle browsing on mangroves was measured at Nxaxo Estuary. The St. Lucia Estuary (28°S; 32°E) represented a unique study site as the mouth has been closed to the sea since 2002 and the mangrove habitats have been non-tidal. St. Lucia Estuary is both a Ramsar and World Heritage site and therefore understanding the response of mangroves to changes in the environment is important. In 2010 sediment characteristics and mangrove population structure were measured at four sites which were chosen to represent different salinity and water level conditions. The site fringing the main channel had the highest density of mangrove seedlings and saplings. The dry site had a lower density of mangroves with mostly only tall adult trees and few saplings. Mangrove tree height and density increased at sites with high sediment moisture and low surface sediment salinity. Few seedlings and saplings were found at sites with dry surface sediment and high salinity. Long term data are needed to assess the influence of mouth closure on recruitment and survival of the mangrove forest at St. Lucia Estuary; however this study has shown that sediment characteristics are unfavourable for mangrove growth at sites now characterized by a lack of tidal flooding. It is not known when exactly the mangroves were planted in Nahoon Estuary (32°S; 27° E), East London, but it is suspected that this was in the early 1970s. Avicennia marina (Forrsk.)Vierh. was planted first, followed a few years later by the planting of Bruguiera gymnorrhiza (L.) Lam. and Rhizophora mucronata (L.) among the larger A. marina trees. Surprisingly the mangrove population appears to be thriving and this study tested the hypothesis that mangroves have expanded and replaced salt marsh over a 33 year period. This study provides important information on mangroves growing at higher latitudes, where they were thought to not occur naturally due to lower annual average temperatures. It further provides insights on future scenarios of possible shifts in vegetation types due to climate change at one of the most southerly distribution sites worldwide. The expansion of mangroves was measured over a 33 year period (1978 - 2011) using past aerial photographs and Esri ArcGIS Desktop 10 software. In addition, field surveys were completed in 2011 to determine the population structure of the present mangrove forest and relate this to environmental conditions. The study showed that mangrove area cover increased linearly at a rate of 0.06 ha-1 expanding over a bare mudflat area, while the salt marsh area cover also increased (0.09 ha-1) but was found to be variable over time. The mangrove area is still small (< 2 ha) and at present no competition between mangroves and salt marsh can be deduced. Instead the area has the ability to maintain high biodiversity and biomass. Avicennia marina was the dominant mangrove species and had high recruitment (seedling density was 33 822 ± 16 364 ha-1) but only a few Bruguiera gymnorrhiza and Rhizophora mucronata individuals were found (< 10 adult trees). The site provides opportunities for studies on mangrove / salt marsh interactions in response to a changing climate at the most southern limit of mangrove distribution in Africa. This research has provided the baseline data, permanent quadrats and tagged trees to be used in future long-term monitoring of population growth and sediment characteristics. At Nxaxo Estuary (32°S; 28°E) the response of mangrove trees (Avicennia marina) to cattle browsing and trampling was investigated by using cattle exclusion plots. Exclusion plots were established by fencing in five 25 m2 quadrats and adjacent to each experimental quadrat a control quadrat (not fenced in, 25 m2) was set-up. Trees were tagged and measured annually from 2010 to 2012. Sediment salinity, pH, moisture, organic content, compaction as well as sediment particle size was also measured in each quadrat. Sediment characteristics did not vary between control and experimental plots but did show changes between the years. The mangrove trees in the cattle exclusion plots grew exponentially over a period of two years. There was a significant increase in mean plant height (5.41 ± 0.53 cm), crown volume (0.54 ± 0.01 m3) and crown diameter (7.09 ± 0.60 cm) from 2010 to 2012. Trees in the control plots had significantly lower growth (p < 0.05). There was a decrease in plant height (-0.07 ± 0.67cm1) and only small increases in crown volume (0.14 ± 0.1 m3) and crown diameter (2.03 ± 2.61 cm). The research showed that browsing on mangroves by cattle stunts growth and causes a shrubby appearance as a result of coppicing. The browsed trees were dwarfed with horizontal spreading of branches and intact foliage close to the ground while the plants in the cattle exclusion plots showed an increase in vertical growth and expansion. In the cattle exclusion plots there was a significantly higher percentage of flowering (67 percent) and fruiting (39 percent) trees in 2012 compared to the control sites where 34 percent of the plants were flowering and 5.4 percent of the plants carried immature propagules. Observations in the field also indicated that cattle had trampled a number of seedlings thus influencing mangrove survival. The study concluded that browsing changes the morphological structure of mangrove trees and reduces growth and seedling establishment. This is an additional stress that the mangroves are exposed to in rural areas where cattle are allowed to roam free. Seventeen permanently open estuaries provide habitat for mangrove forests along the former Transkei coast. This part of the Eastern Cape is mostly undeveloped and difficult to access. Mangrove area cover, species distribution, population structure and health of the mangrove habitat were compared with results from previous studies in 1982 and 1999. The mangrove Bruguiera gymnorrhiza had the densest stands and was widely distributed as it was present in 13 of the 17 estuaries. Avicennia marina was dominant in those estuaries which had the largest area cover of mangroves and was present in 10 estuaries, while Rhizophora mucronata was rare and only present in five estuaries. Anthropogenic and natural impacts were noted within the mangrove habitats in each of these estuaries. Harvesting of mangrove wood, livestock browsing and trampling and footpaths occurred in most of the estuaries (> 70 percent). It was observed that browsing on trees resulted in a clear browse-line and browsing on propagules mainly by goats resulted in reduced seedling establishment in most of the estuaries except those in protected areas. Mangroves had re-established in estuaries where they had been previously lost but mouth closure due to drought and sea storms resulted in the mass die back of mangroves in the Kobonqaba Estuary. There was a total loss of 31.5 ha in mangrove area cover in the last 30 years and this was a total reduction of 10.5 ha (11 percent) for every decade. This is high considering that the present total mangrove area cover is only 240.6 ha for all the Transkei estuaries. In this study it was concluded that the anthropogenic impacts such as livestock browsing and trampling as well as harvesting in these estuaries contributed most to the mangrove degradation as these are continuous pressures occurring over long periods and are expected to increase in future with increasing human population. Natural changes such as sea storms occur less frequently but could result in large scale destruction over shorter periods. Examples of these are mouth closure that result in mangrove mass mortality as well as strong floods which destroy forest by scouring of the banks.
- Full Text:
- Date Issued: 2012
Rhenium complexes with multidentate benzazoles and related N,X-donor (X = N, O, S) ligands
- Authors: Potgieter, Kim Carey
- Date: 2012
- Subjects: Rhenium , Benzimidazoles , Ligands (Biochemistry)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10438 , http://hdl.handle.net/10948/d1020773
- Description: The coordination behaviour of 4-aminoantipyrine (H2pap) and its Schiff base derivatives with the oxorhenium(V) and tricarbonyl rhenium(I) cores are reported. The reactions of trans-[ReOX3(PPh3)2] (X = Cl, Br) with H2pap were studied, and the complexes cis-[ReX2(pap)(H2pap)(PPh3)](ReO4) were isolated. The ligand pap is coordinated monodentately through the doubly deprotonated amino nitrogen as an imide, and H2pap acts as a neutral bidentate chelate, with coordination through the neutral amino nitrogen and the ketonic oxygen. The reactions of trans-[ReOBr3(PPh3)2] and cis-[ReO2I(PPh3)2] with -(2-aminobenzylideneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one (H2nap) and 4-(2-hydroxybenzylideneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one (Hoap) are also reported. The complexes cis-[Re(nap)Br2(PPh3)]Br, [ReO(OEt)(Hnap)(PPh3)]I and [ReO(OMe)(oap)(PPh3)]I were isolated and structurally characterized. The reactions of the Schiff base derivatives 1,2-(diimino-4’-antipyrinyl)ethane (dae) and 2,6-bis(4-amino-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one)pyridine (bap) with [Re(CO)5X] (X = Br or Cl) produced fac-[Re(CO)3(dae)Cl] and fac-[Re(CO)3(bap)Br] respectively. A series of rhenium(I) tricarbonyl complexes containing bidentate derivatives of aniline was synthesized and structurally characterized. With 1,2-diaminobenzene (Hpda) the ‘2+1’ complex salt fac-[Re(CO)3(κ1-Hpda)(κ2-Hpda)]Br was isolated, but with 2-mercaptophenol (Hspo) the bridged dimer [Re2(CO)7(spo)2] was found. The neutral complex [Re(CO)3(ons)(Hno)] was isolated from the reaction of [Re(CO)5Br] with 2-[(2-methylthio)benzylideneimino]phenol (Hons; Hno = 2-aminophenol), with ons coordinated as a bidentate chelate with a free SCH3 group. In the complex [Re(CO)3(Htpn)Br] (Htpn = N-(2-(methylthio)benzylidene)benzene-1,2-diamine) the potentially tridentate ligand Htpn is coordinated via the methylthiol sulfur and imino nitrogen atoms only, with a free amino group. These rhenium(I) complexes, with the exception of [Re2(CO)7(spo)2], revealed broad emissions centred around 535 nm. The reactions of the rhenium(V) complex cis-[ReO2I(PPh3)2] with 2-aminothiophenol (H2atp), benzene-1,2-dithiol (H2tdt) and 2-hydroxybenzenethiol (H2otp) led to the formation of the rhenium(III) compounds [Re(Hatp)(ibsq)2].OPPh3, [Re(sbsq)3].OPPh3 and [Re(obsq)3].OPPh3 (ibsq = 2-iminothiobenzosemiquinonate, sbsq = 1,2-dithiobenzosemiquinonate, obsq = 2-hydroxothiobenzosemiquinonate) respectively. The complexes adopt a trigonal prismatic geometry around the rhenium centre with average twists angles between 3.20-26.10˚. The E1/2 values for the Re(III)/Re(IV) redox couple were found to be 0.022, 0.142 and 0.126 V for [Re(Hatp)(ibsq)2].OPPh3, [Re(sbsq)3].OPPh3 and [Re(obsq)3].OPPh3 respectively. The reactions of the benzoxazole ligands, 3-(benzoxazol-2-yl)pyridin-2-ol (Hbop) and 5-amino-2-(benzoxazol-2-yl)phenol (Habo) with a [ReO]3+ precursor led to the rhenium(III) complex, [ReCl2(bop)(PPh3)2], and the complex salt, [ReO(abo)I(PPh3)2]ReO4, respectively. A variety of benzothiazole and benzimidazole derivatives were reacted with [Re(CO)5Br]. In the case of bis(benzothiazol-2-ylethyl)sulfide (bts), the neutral complex fac-[Re(CO)3(bts)Br] was obtained. The dimeric complexes (μ-dbt)2[Re(CO)3]2 and (μ-mbt)2[Re(CO)3]2 were formed when 1,3-bis(benzothiazol-2-yl)thiourea (Hdbt) and 1-(benzothiazol-2-ylidene)-3-methylthiourea (Hmbt) were used as ligands. The reaction of 2,2’-(oxybis(methylene))bis(benzimidazole) (bmb) with [Re(CO)5Cl] resulted in the rhenium(I) complex salt fac-[Re(CO)3(bmb)]+, with the tri-μ-chlorohexacarbonyl dirhenate [Re2(CO)6Cl3]- as the counter anion. The neutral complex fac-[Re(CO)3(btp)Cl] was isolated from the reaction of the 2,9-bis(benzothiazol-2-yl)-1,10-phenanthroline (btp) ligand and [Re(CO)5Cl]. The reactions of trans-[ReOCl3(PPh3)2] with bis(benzimidazol-2-ylethyl)sulfide (btn) and 1-(benzothiazol-2-ylidene)-3-methylthiourea (Hmbt) led to the formation of the cationic compounds (μ-O)2[Re2O2(btn)2]I2 and [ReCl2(bte)(PPh3)2]Cl (bte = (benzothiazole-2-yl)-N-ethylidenemethanamine) respectively.
- Full Text:
- Date Issued: 2012
- Authors: Potgieter, Kim Carey
- Date: 2012
- Subjects: Rhenium , Benzimidazoles , Ligands (Biochemistry)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10438 , http://hdl.handle.net/10948/d1020773
- Description: The coordination behaviour of 4-aminoantipyrine (H2pap) and its Schiff base derivatives with the oxorhenium(V) and tricarbonyl rhenium(I) cores are reported. The reactions of trans-[ReOX3(PPh3)2] (X = Cl, Br) with H2pap were studied, and the complexes cis-[ReX2(pap)(H2pap)(PPh3)](ReO4) were isolated. The ligand pap is coordinated monodentately through the doubly deprotonated amino nitrogen as an imide, and H2pap acts as a neutral bidentate chelate, with coordination through the neutral amino nitrogen and the ketonic oxygen. The reactions of trans-[ReOBr3(PPh3)2] and cis-[ReO2I(PPh3)2] with -(2-aminobenzylideneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one (H2nap) and 4-(2-hydroxybenzylideneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one (Hoap) are also reported. The complexes cis-[Re(nap)Br2(PPh3)]Br, [ReO(OEt)(Hnap)(PPh3)]I and [ReO(OMe)(oap)(PPh3)]I were isolated and structurally characterized. The reactions of the Schiff base derivatives 1,2-(diimino-4’-antipyrinyl)ethane (dae) and 2,6-bis(4-amino-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one)pyridine (bap) with [Re(CO)5X] (X = Br or Cl) produced fac-[Re(CO)3(dae)Cl] and fac-[Re(CO)3(bap)Br] respectively. A series of rhenium(I) tricarbonyl complexes containing bidentate derivatives of aniline was synthesized and structurally characterized. With 1,2-diaminobenzene (Hpda) the ‘2+1’ complex salt fac-[Re(CO)3(κ1-Hpda)(κ2-Hpda)]Br was isolated, but with 2-mercaptophenol (Hspo) the bridged dimer [Re2(CO)7(spo)2] was found. The neutral complex [Re(CO)3(ons)(Hno)] was isolated from the reaction of [Re(CO)5Br] with 2-[(2-methylthio)benzylideneimino]phenol (Hons; Hno = 2-aminophenol), with ons coordinated as a bidentate chelate with a free SCH3 group. In the complex [Re(CO)3(Htpn)Br] (Htpn = N-(2-(methylthio)benzylidene)benzene-1,2-diamine) the potentially tridentate ligand Htpn is coordinated via the methylthiol sulfur and imino nitrogen atoms only, with a free amino group. These rhenium(I) complexes, with the exception of [Re2(CO)7(spo)2], revealed broad emissions centred around 535 nm. The reactions of the rhenium(V) complex cis-[ReO2I(PPh3)2] with 2-aminothiophenol (H2atp), benzene-1,2-dithiol (H2tdt) and 2-hydroxybenzenethiol (H2otp) led to the formation of the rhenium(III) compounds [Re(Hatp)(ibsq)2].OPPh3, [Re(sbsq)3].OPPh3 and [Re(obsq)3].OPPh3 (ibsq = 2-iminothiobenzosemiquinonate, sbsq = 1,2-dithiobenzosemiquinonate, obsq = 2-hydroxothiobenzosemiquinonate) respectively. The complexes adopt a trigonal prismatic geometry around the rhenium centre with average twists angles between 3.20-26.10˚. The E1/2 values for the Re(III)/Re(IV) redox couple were found to be 0.022, 0.142 and 0.126 V for [Re(Hatp)(ibsq)2].OPPh3, [Re(sbsq)3].OPPh3 and [Re(obsq)3].OPPh3 respectively. The reactions of the benzoxazole ligands, 3-(benzoxazol-2-yl)pyridin-2-ol (Hbop) and 5-amino-2-(benzoxazol-2-yl)phenol (Habo) with a [ReO]3+ precursor led to the rhenium(III) complex, [ReCl2(bop)(PPh3)2], and the complex salt, [ReO(abo)I(PPh3)2]ReO4, respectively. A variety of benzothiazole and benzimidazole derivatives were reacted with [Re(CO)5Br]. In the case of bis(benzothiazol-2-ylethyl)sulfide (bts), the neutral complex fac-[Re(CO)3(bts)Br] was obtained. The dimeric complexes (μ-dbt)2[Re(CO)3]2 and (μ-mbt)2[Re(CO)3]2 were formed when 1,3-bis(benzothiazol-2-yl)thiourea (Hdbt) and 1-(benzothiazol-2-ylidene)-3-methylthiourea (Hmbt) were used as ligands. The reaction of 2,2’-(oxybis(methylene))bis(benzimidazole) (bmb) with [Re(CO)5Cl] resulted in the rhenium(I) complex salt fac-[Re(CO)3(bmb)]+, with the tri-μ-chlorohexacarbonyl dirhenate [Re2(CO)6Cl3]- as the counter anion. The neutral complex fac-[Re(CO)3(btp)Cl] was isolated from the reaction of the 2,9-bis(benzothiazol-2-yl)-1,10-phenanthroline (btp) ligand and [Re(CO)5Cl]. The reactions of trans-[ReOCl3(PPh3)2] with bis(benzimidazol-2-ylethyl)sulfide (btn) and 1-(benzothiazol-2-ylidene)-3-methylthiourea (Hmbt) led to the formation of the cationic compounds (μ-O)2[Re2O2(btn)2]I2 and [ReCl2(bte)(PPh3)2]Cl (bte = (benzothiazole-2-yl)-N-ethylidenemethanamine) respectively.
- Full Text:
- Date Issued: 2012
Ruthenium and palladium assisted silver transport in silicon carbide
- Authors: O'Connell, Jacques Herman
- Date: 2012
- Subjects: Gas cooled reactors , Ruthenium , Palladium , Silicon carbide
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10404 , http://hdl.handle.net/10948/d1010960 , Gas cooled reactors , Ruthenium , Palladium , Silicon carbide
- Full Text:
- Date Issued: 2012
- Authors: O'Connell, Jacques Herman
- Date: 2012
- Subjects: Gas cooled reactors , Ruthenium , Palladium , Silicon carbide
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10404 , http://hdl.handle.net/10948/d1010960 , Gas cooled reactors , Ruthenium , Palladium , Silicon carbide
- Full Text:
- Date Issued: 2012
Seasonal changes in the heat production of an African small mammal, Rhabdomys pumilio
- Authors: Welman, Shaun
- Date: 2012
- Subjects: Mice -- Physiology Body temperature -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21417 , vital:29514
- Description: Endothermy refers to the ability of an individual to produce heat from internal sources, and allows animals to maintain a body temperature that is higher than their external environment. Although much is known about the benefits of endothermy, its origin is highly debated. Nonetheless, due to environmental variation, endotherms have to regulate their heat production (thermogenesis) in order to remain normothermic. An endotherms regulatory response seems to be body size dependent. Keeping warm during cold periods is energetically expensive, and for small mammals this is exacerbated by their high rate of heat loss due to high surface area to volume ratios. To compensate for the heat lost, small non-hibernating mammals must increase their level of thermogenesis. Much of our current understanding of thermogenic responses of small mammals is derived from laboratory acclimated animals, and studies on naturally acclimatized animals are uncommon. In addition, most studies on thermogenesis tend to focus on one level of animal organisation, such as subcellular, tissue or in-vivo, but seldom integrate these data. The aim of this study was to measure year-round variation in thermogenesis across all levels of organisation, using naturally acclimatized Rhabdomys pumilio individuals from the Nelson Mandela Metropolitan University, Port Elizabeth. It was predicted that the level of thermogenesis would be significantly higher during winter relative to other seasons in order to cope with the low ambient temperatures (Tas) experienced during this season. Open flow respirometry was used to measure the animal's oxygen consumption, as a proxy for metabolism; the by product of which is heat production. The animal's basal metabolic rate (BMR), nonshivering thermogenesis (NST) capacity and summit metabolic rate (MSUM) were measured. A Western blot analysis was used to determine the expression of uncoupling protein 1 (UCP 1) in the animals' brown adipose tissue (BAT), as well as determine its relative concentration. The cytochrome c oxidase (COX) activity of the animals' visceral organs and BAT was measured, as an indicator of the tissues' metabolic activity. COX activity was determined as the difference in the tissues' oxygen consumption before and after the addition of horse cytochrome c.
- Full Text:
- Date Issued: 2012
- Authors: Welman, Shaun
- Date: 2012
- Subjects: Mice -- Physiology Body temperature -- Regulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/21417 , vital:29514
- Description: Endothermy refers to the ability of an individual to produce heat from internal sources, and allows animals to maintain a body temperature that is higher than their external environment. Although much is known about the benefits of endothermy, its origin is highly debated. Nonetheless, due to environmental variation, endotherms have to regulate their heat production (thermogenesis) in order to remain normothermic. An endotherms regulatory response seems to be body size dependent. Keeping warm during cold periods is energetically expensive, and for small mammals this is exacerbated by their high rate of heat loss due to high surface area to volume ratios. To compensate for the heat lost, small non-hibernating mammals must increase their level of thermogenesis. Much of our current understanding of thermogenic responses of small mammals is derived from laboratory acclimated animals, and studies on naturally acclimatized animals are uncommon. In addition, most studies on thermogenesis tend to focus on one level of animal organisation, such as subcellular, tissue or in-vivo, but seldom integrate these data. The aim of this study was to measure year-round variation in thermogenesis across all levels of organisation, using naturally acclimatized Rhabdomys pumilio individuals from the Nelson Mandela Metropolitan University, Port Elizabeth. It was predicted that the level of thermogenesis would be significantly higher during winter relative to other seasons in order to cope with the low ambient temperatures (Tas) experienced during this season. Open flow respirometry was used to measure the animal's oxygen consumption, as a proxy for metabolism; the by product of which is heat production. The animal's basal metabolic rate (BMR), nonshivering thermogenesis (NST) capacity and summit metabolic rate (MSUM) were measured. A Western blot analysis was used to determine the expression of uncoupling protein 1 (UCP 1) in the animals' brown adipose tissue (BAT), as well as determine its relative concentration. The cytochrome c oxidase (COX) activity of the animals' visceral organs and BAT was measured, as an indicator of the tissues' metabolic activity. COX activity was determined as the difference in the tissues' oxygen consumption before and after the addition of horse cytochrome c.
- Full Text:
- Date Issued: 2012
Sketch-based digital storyboards and floor plans for authoring computer-generated film pre-visuals
- Authors: Matthews, Timothy
- Date: 2012
- Subjects: Computer graphics , Computer vision
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10463 , http://hdl.handle.net/10948/d1008430 , Computer graphics , Computer vision
- Description: Pre-visualisation is an important tool for planning films during the pre-production phase of filmmaking. Existing pre-visualisation authoring tools do not effectively support the user in authoring pre-visualisations without impairing software usability. These tools require the user to either have programming skills, be experienced in modelling and animation, or use drag-and-drop style interfaces. These interaction methods do not intuitively fit with pre-production activities such as floor planning and storyboarding, and existing tools that apply a storyboarding metaphor do not automatically interpret user sketches. The goal of this research was to investigate how sketch-based user interfaces and methods from computer vision could be used for supporting pre-visualisation authoring using a storyboarding approach. The requirements for such a sketch-based storyboarding tool were determined from literature and an interview with Triggerfish Animation Studios. A framework was developed to support sketch-based pre-visualisation authoring using a storyboarding approach. Algorithms for describing user sketches, recognising objects and performing pose estimation were designed to automatically interpret user sketches. A proof of concept prototype implementation of this framework was evaluated in order to assess its usability benefit. It was found that the participants could author pre-visualisations effectively, efficiently and easily. The results of the usability evaluation also showed that the participants were satisfied with the overall design and usability of the prototype tool. The positive and negative findings of the evaluation were interpreted and combined with existing heuristics in order to create a set of guidelines for designing similar sketch-based pre-visualisation authoring tools that apply the storyboarding approach. The successful implementation of the proof of concept prototype tool provides practical evidence of the feasibility of sketch-based pre-visualisation authoring. The positive results from the usability evaluation established that sketch-based interfacing techniques can be used effectively with a storyboarding approach for authoring pre-visualisations without impairing software usability.
- Full Text:
- Date Issued: 2012
- Authors: Matthews, Timothy
- Date: 2012
- Subjects: Computer graphics , Computer vision
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10463 , http://hdl.handle.net/10948/d1008430 , Computer graphics , Computer vision
- Description: Pre-visualisation is an important tool for planning films during the pre-production phase of filmmaking. Existing pre-visualisation authoring tools do not effectively support the user in authoring pre-visualisations without impairing software usability. These tools require the user to either have programming skills, be experienced in modelling and animation, or use drag-and-drop style interfaces. These interaction methods do not intuitively fit with pre-production activities such as floor planning and storyboarding, and existing tools that apply a storyboarding metaphor do not automatically interpret user sketches. The goal of this research was to investigate how sketch-based user interfaces and methods from computer vision could be used for supporting pre-visualisation authoring using a storyboarding approach. The requirements for such a sketch-based storyboarding tool were determined from literature and an interview with Triggerfish Animation Studios. A framework was developed to support sketch-based pre-visualisation authoring using a storyboarding approach. Algorithms for describing user sketches, recognising objects and performing pose estimation were designed to automatically interpret user sketches. A proof of concept prototype implementation of this framework was evaluated in order to assess its usability benefit. It was found that the participants could author pre-visualisations effectively, efficiently and easily. The results of the usability evaluation also showed that the participants were satisfied with the overall design and usability of the prototype tool. The positive and negative findings of the evaluation were interpreted and combined with existing heuristics in order to create a set of guidelines for designing similar sketch-based pre-visualisation authoring tools that apply the storyboarding approach. The successful implementation of the proof of concept prototype tool provides practical evidence of the feasibility of sketch-based pre-visualisation authoring. The positive results from the usability evaluation established that sketch-based interfacing techniques can be used effectively with a storyboarding approach for authoring pre-visualisations without impairing software usability.
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- Date Issued: 2012