Optimization of flexible spectrum in optical transport networks
- Boiyo, Duncan Kiboi, Gamatham, Romeo
- Authors: Boiyo, Duncan Kiboi , Gamatham, Romeo
- Date: 2017
- Subjects: Digital communications Optical fiber communication , Optical communications Fiber optics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/14609 , vital:27803
- Description: The ever-increasing demand for broadband services by end-user devices utilising 3G/4G/LTE and the projected 5G in the last mile will require sustaining broadband supply from fibre-linked terminals. The eventual outcome of the high demand for broadband is strained optical and electronic devices. The backbone optical fibre transport systems and techniques such as dense wavelength division multiplexing (DWDM), higher modulation formats, coherent detection and signal amplification have increased both fibre capacity and spectrum efficiency. A major challenge to fibre capacity and spectrum efficiency is fibre-faults and optical impairments, network management, routing and wavelength assignment (RWA). In this study, DWDM and flexible spectrum techniques such as wavelength assignment and adjustment, wavelength conversion and switching, optical add and drop multiplexing (OADM) and bitrate variable transmission have been experimentally optimized in a laboratory testbed for short- and long-haul optical fibre networks. This work starts by experimentally optimising different transmitters, fibre-types and receivers suitable for implementing cost effective and energy efficient flexible spectrum networks. Vertical cavity surface-emitting lasers (VCSELs) and distributed feedback (DFB) lasers have been studied to provide up to 10 Gb/s per channel in 1310 nm and 1550 nm transmission windows. VCSELs provide wavelength assignment and adjustment. This work utilises the non-return-to-zero (NRZ) on-off keying (OOK) modulation technique and direct detection due to their cost and simplicity. By using positive intrinsic negative (PIN) photo-receivers with error-free BER sensitivity of -18±1 dBm at the acceptable 10-9-bit error rate (BER) threshold level, unamplified transmission distances between 6 km and 76 km have been demonstrated using G.652 and G.655 single mode fibres (SMFs). For the first time, an all optical VCSEL to VCSEL wavelength conversion, switching, transmission at the 1550 nm window and BER evaluation of a NRZ data signal is experimentally demonstrated. With VCSEL wavelength conversion and switching, wavelength adjustments to a spectrum width of 4.8 nm (600 GHz) can be achieved to provide alternative routes to signals when fibre-cuts and wavelength collision occurs therefore enhancing signal continuity. This work also demonstrates a technique of removing and adding a wavelength in a bundle of DWDM and flexible channels using an OADM. This has been implemented using a VCSEL and a fibre Bragg grating (FBG) providing a wavelength isolation ratio of 31.4 dB and ~0.3 𝑑𝐵 add/drop penalty of 8.5 Gb/s signal. As a result, an OADM improves spectrum efficiency by offering wavelength re-use. Optical impairments such as crosstalk, chromatic dispersion (CD) and effects of polarization mode dispersion (PMD) have been experimentally investigated and mitigated. This work showed that crosstalk penalty increased with fibre-length, bitrate, interfering signal power and reduced channel spacing and as a result, a crosstalk-penalty trade-off is required. Effects of CD on a transmitted 10 Gb/s signal were also investigated and its mitigation techniques used to increase the fibre-reach. This work uses the negative dispersion fibres to mitigate the accumulated dispersion over the distance of transmission. A 5 dB sensitivity improvement is reported for an unamplified 76 km using DFB transmitters and combination of NZDSF true-wave reduced slope (TW-RS) and submarine reduced slope (TW-SRS) with + and – dispersion coefficients respectively. We have also demonstrated up to 52 km 10 Gb/s per channel VCSEL-based transmission and reduced net dispersion. Experimental demonstration of forward Raman amplification has achieved a 4.7 dB on-off gain distributed over a 4.8 nm spectral width and a 1.7 dB improvement of receiver sensitivity in Raman-aided 10 Gb/s per wavelength VCSEL transmission. Finally, 4.25-10 Gb/s PON-based point to point (P2P) and point to multipoint (P2MP) broadcast transmission have been experimentally demonstrated. A 10 Gb/s with a 1:8 passive splitter incurred a 3.7 dB penalty for a 24.7 km fibre-link. In summary, this work has demonstrated cost effective and energy efficient potential flexible spectrum techniques for high speed signal transmission. With the optimized network parameters, flexible spectrum is therefore relevant in short-reach, metro-access and long-haul applications for national broadband networks and the Square Kilometre Array (SKA) fibre-based signal and data transmission.
- Full Text:
- Date Issued: 2017
- Authors: Boiyo, Duncan Kiboi , Gamatham, Romeo
- Date: 2017
- Subjects: Digital communications Optical fiber communication , Optical communications Fiber optics
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/14609 , vital:27803
- Description: The ever-increasing demand for broadband services by end-user devices utilising 3G/4G/LTE and the projected 5G in the last mile will require sustaining broadband supply from fibre-linked terminals. The eventual outcome of the high demand for broadband is strained optical and electronic devices. The backbone optical fibre transport systems and techniques such as dense wavelength division multiplexing (DWDM), higher modulation formats, coherent detection and signal amplification have increased both fibre capacity and spectrum efficiency. A major challenge to fibre capacity and spectrum efficiency is fibre-faults and optical impairments, network management, routing and wavelength assignment (RWA). In this study, DWDM and flexible spectrum techniques such as wavelength assignment and adjustment, wavelength conversion and switching, optical add and drop multiplexing (OADM) and bitrate variable transmission have been experimentally optimized in a laboratory testbed for short- and long-haul optical fibre networks. This work starts by experimentally optimising different transmitters, fibre-types and receivers suitable for implementing cost effective and energy efficient flexible spectrum networks. Vertical cavity surface-emitting lasers (VCSELs) and distributed feedback (DFB) lasers have been studied to provide up to 10 Gb/s per channel in 1310 nm and 1550 nm transmission windows. VCSELs provide wavelength assignment and adjustment. This work utilises the non-return-to-zero (NRZ) on-off keying (OOK) modulation technique and direct detection due to their cost and simplicity. By using positive intrinsic negative (PIN) photo-receivers with error-free BER sensitivity of -18±1 dBm at the acceptable 10-9-bit error rate (BER) threshold level, unamplified transmission distances between 6 km and 76 km have been demonstrated using G.652 and G.655 single mode fibres (SMFs). For the first time, an all optical VCSEL to VCSEL wavelength conversion, switching, transmission at the 1550 nm window and BER evaluation of a NRZ data signal is experimentally demonstrated. With VCSEL wavelength conversion and switching, wavelength adjustments to a spectrum width of 4.8 nm (600 GHz) can be achieved to provide alternative routes to signals when fibre-cuts and wavelength collision occurs therefore enhancing signal continuity. This work also demonstrates a technique of removing and adding a wavelength in a bundle of DWDM and flexible channels using an OADM. This has been implemented using a VCSEL and a fibre Bragg grating (FBG) providing a wavelength isolation ratio of 31.4 dB and ~0.3 𝑑𝐵 add/drop penalty of 8.5 Gb/s signal. As a result, an OADM improves spectrum efficiency by offering wavelength re-use. Optical impairments such as crosstalk, chromatic dispersion (CD) and effects of polarization mode dispersion (PMD) have been experimentally investigated and mitigated. This work showed that crosstalk penalty increased with fibre-length, bitrate, interfering signal power and reduced channel spacing and as a result, a crosstalk-penalty trade-off is required. Effects of CD on a transmitted 10 Gb/s signal were also investigated and its mitigation techniques used to increase the fibre-reach. This work uses the negative dispersion fibres to mitigate the accumulated dispersion over the distance of transmission. A 5 dB sensitivity improvement is reported for an unamplified 76 km using DFB transmitters and combination of NZDSF true-wave reduced slope (TW-RS) and submarine reduced slope (TW-SRS) with + and – dispersion coefficients respectively. We have also demonstrated up to 52 km 10 Gb/s per channel VCSEL-based transmission and reduced net dispersion. Experimental demonstration of forward Raman amplification has achieved a 4.7 dB on-off gain distributed over a 4.8 nm spectral width and a 1.7 dB improvement of receiver sensitivity in Raman-aided 10 Gb/s per wavelength VCSEL transmission. Finally, 4.25-10 Gb/s PON-based point to point (P2P) and point to multipoint (P2MP) broadcast transmission have been experimentally demonstrated. A 10 Gb/s with a 1:8 passive splitter incurred a 3.7 dB penalty for a 24.7 km fibre-link. In summary, this work has demonstrated cost effective and energy efficient potential flexible spectrum techniques for high speed signal transmission. With the optimized network parameters, flexible spectrum is therefore relevant in short-reach, metro-access and long-haul applications for national broadband networks and the Square Kilometre Array (SKA) fibre-based signal and data transmission.
- Full Text:
- Date Issued: 2017
An investigation into the effects of nano-carbons on the negative electrode morphology of lead acid batteries under high rate partial state of capacity cycling
- Authors: Bolo, Lukanyo
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53324 , vital:45132
- Description: New technological developments in the field of Hybrid Electric Vehicles (HEV’s), vehicle stop-start applications and electrical power utility devices have brought about new demands on the use of energy storage devices such as the Pb-acid battery. These applications require a new understanding and research into the material chemistry of the battery where it has to functionin a Partial State of Capacity Cycling (PSoCC) or High Rate Partial State of Capacity Cycling (HRPSoCC)duty. The Pb-acid battery is well known for its use in the automotive industry where it had worked for decades as a typical Starter, Lighting and Ignition (SLI) power source. However, the conventional Pb-acid battery is not suitable for the new types of vehicle demands and applications. When the Pb-lead acid battery is subjected to PSoCC conditions, very quickly excessive amount of non-conducting PbSO4crystals are formed on the negative plates of the battery that then drastically reduce its useful life in application. Over the years, researchers have shown that the small addition of certain carbon types to the negative plate active material (NAM) during battery manufacturing can reduce the sulfation effect thereby increasing its use the modern vehicle applications. This study investigated industrial manufactured cells that contained up to 0.5 % by weight two types of carbons in the NAM. These were compared to standard built cells in terms of their standard achievable capacities at various rates, their Cold Cranking Ability (CCA), their Dynamic Charge Acceptance (DCA) and a simplified PSoCC test. The carbons were classified as an activated carbon and a carbon nano-fiber and were included as a dry weight additive during the standard paste manufacturing process of the negative plate. Cells were built with a 9-plate configuration using standard expanded grid positive plates with a nominal rated capacity of 36 Ah. The cells were formed and subjected to a number of electrochemical tests, of which selected negative plates were then studied using Scanning Electron Microscopy (SEM) and Electrochemical in-situ Atomic Force Microscopy (EC-AFM). The microscopic study was then used to try and relate the observed material characteristics of the NAM with the carbons to the electrochemical results observed when testing a built cell. , Thesis (MA) --Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Bolo, Lukanyo
- Date: 2021-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/53324 , vital:45132
- Description: New technological developments in the field of Hybrid Electric Vehicles (HEV’s), vehicle stop-start applications and electrical power utility devices have brought about new demands on the use of energy storage devices such as the Pb-acid battery. These applications require a new understanding and research into the material chemistry of the battery where it has to functionin a Partial State of Capacity Cycling (PSoCC) or High Rate Partial State of Capacity Cycling (HRPSoCC)duty. The Pb-acid battery is well known for its use in the automotive industry where it had worked for decades as a typical Starter, Lighting and Ignition (SLI) power source. However, the conventional Pb-acid battery is not suitable for the new types of vehicle demands and applications. When the Pb-lead acid battery is subjected to PSoCC conditions, very quickly excessive amount of non-conducting PbSO4crystals are formed on the negative plates of the battery that then drastically reduce its useful life in application. Over the years, researchers have shown that the small addition of certain carbon types to the negative plate active material (NAM) during battery manufacturing can reduce the sulfation effect thereby increasing its use the modern vehicle applications. This study investigated industrial manufactured cells that contained up to 0.5 % by weight two types of carbons in the NAM. These were compared to standard built cells in terms of their standard achievable capacities at various rates, their Cold Cranking Ability (CCA), their Dynamic Charge Acceptance (DCA) and a simplified PSoCC test. The carbons were classified as an activated carbon and a carbon nano-fiber and were included as a dry weight additive during the standard paste manufacturing process of the negative plate. Cells were built with a 9-plate configuration using standard expanded grid positive plates with a nominal rated capacity of 36 Ah. The cells were formed and subjected to a number of electrochemical tests, of which selected negative plates were then studied using Scanning Electron Microscopy (SEM) and Electrochemical in-situ Atomic Force Microscopy (EC-AFM). The microscopic study was then used to try and relate the observed material characteristics of the NAM with the carbons to the electrochemical results observed when testing a built cell. , Thesis (MA) --Faculty of Science, School of Biomolecular and Chemical Sciences, 2021
- Full Text:
- Date Issued: 2021-04
Rhenium (I) and (V) complexes with potentially mulidentate ligands containing the Amino group
- Authors: Booysen, Irvin Noel
- Date: 2009
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10386 , http://hdl.handle.net/10948/1270 , Rhenium , Ligands
- Description: The complex trans-[Re(dab)Cl3(PPh3)2] (H2dab = 1,2-diaminobenzene) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2dab in ethanol. The ligand dab is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only in a distorted octahedral coordination geometry around the metal ion. The complex trans- [Re(ada)Cl3(PPh3)2] (H2ada = 2-aminodiphenylamine) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2ada in acetonitrile. The ligand ada is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. The ‘2 + 1’ complex fac- [Re(CO)3(Hamp)(amp)] (Hamp = 2-aminophenol) was isolated from the reaction of a two molar ratio of Hamp with [Re(CO)5Br] in toluene. The reaction of a 1:1 molar ratio of [Re(CO)5Br] and H2ada led to the isolation of the Re(I) complex, fac- [Re(CO)3Br(H2ada)]. The reaction of equimolar quantities of cis-[ReO2I(PPh3)2] with 5,6-diamino-1,3- dimethyluracil (H2ddd) in acetonitrile led to the formation of [Re(ddd)(Hddd)I(PPh3)2](ReO4). The X-ray crystal structure shows that the ligand ddd is coordinated monodentately through the doubly deprotonated amino nitrogen and is therefore present as an imide. The chelate Hddd is coordinated bidentately via the neutral amino nitrogen, which is coordinated trans to the imido nitrogen, and the singly deprotonated amido nitrogen, trans to the iodide. The reaction of trans-[ReOCl3(PPh3)2] with N-(2-aminobenzylidene)-5-amino-1,3-dimethyl uracil (H3dua) in ethanol gave a mixed crystal which contains both the neutral oxorhenium(V) complex [ReOCl(Hdua)] and the imido rhenium(V) [Re(dua)Cl2(PPh3)] in an equimolar ratio in the asymmetric unit. The reaction of equimolar quantities of [NH4(ReO4)] with H2ddd in methanol under reflux led to the isolation of [C12H12N6O4] as only product. The [ReO4]- anion is therefore instrumental in the formation of [C12H12N6O4], and since the product contains no rhenium in any oxidation state, the conclusion is that [ReO4]- catalyses the oxidative deamination Abstract I.N. Booysen Nelson Mandela Metropolitan University vii of H2ddd. The X-ray crystal structure consists of two centrosymmetric, tricyclic rings, comprising a central pyrazine ring and two terminal pyrimidine rings. The reaction of 2-(2-aminophenyl)benzothiazole (Habt) with [Re(CO)5Br] led to the isolation of the rhenium(I) complex fac-[Re(Habt)(CO)3Br]. With trans-[ReOCl3(PPh3)2], the ligand Habt decomposed to form the oxofree rhenium(V) complex [Re(itp)2Cl(PPh3)] (itp = 2-amidophenylthiolate). From the reaction of trans-[ReOBr3(PPh3)2] with 2-(2- hydroxyphenyl)benzothiazole (Hhpd) the complex [ReVOBr2(hpd)(PPh3)] was obtained. The reaction of a twofold molar excess of H2apb (2-(2-aminophenyl)-1-benzimidazole) with trans-[ReO2(py)4]Cl in ethanol gave the green product of formulation [ReO(Hapb)(apb)] in good yield. The rhenium atom lies in a distorted trigonalbipyramidal environment. The two imidazole N(2) atoms lie in the apical positions trans to each other, with the oxo-oxygen and two amido N(1) atoms in the trigonal plane. A new nitrosylrhenium(II) complex salt, [Re(NO)BrL2(PPh3)2](ReO4) (H2L2 = 2-amino-5- (triphenylphosphino)phenol), is the first example of a complex containing the triphenylphosphonium-amidophenolate ligand L2, formed by the nucleophilic attack of a PPh3 on a coordinated amidophenolate ring. The complex salt trans-[Re(mps)Cl(PPh3)2](ReO4) (H3mps = N-(2-amino-3- methylphenyl)salicylideneimine) was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps. The X-ray crystal structure shows that the trianionic ligand mps acts as a tridentate chelate via the doubly deprotonated amino nitrogen (an imide), the neutral imino nitrogen and the deprotonated phenolic oxygen. The six-coordinated complex cis-[Re(mps)Cl2(PPh3)2] was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps in benzene. The X-ray crystal structure show that the mps ligand coordinates as a tridentate chelate via the doubly deprotonated 2-amino nitrogen, the neutral imino nitrogen and the phenolate oxygen. The imide and phenolate oxygen coordinate trans to each other in a distorted octahedral geometry, around the rhenium(V) centre, with the two chlorides in cis positions. A new oxofree rhenium(V) complex salt, [Re(bbd)2](ReO4) ( H2bbd = N-(2- Abstract I.N. Booysen Nelson Mandela Metropolitan University viii aminobenzylidene)benzene-1,2-diamine), has been synthesized and the chelates bbd are coordinated as dianionic tridentate N,N,N-donor diamidoimines. The rhenium(V) ion is centered in a distorted trigonal prism. The rhenium(I) compound fac-[Re(CO)3(daa)].Hpab.H2O (Hpab = N1,N2-(1,2- phenylene)bis(2-aminobenzamide); Hdaa = 2-amino-N-(2-aminophenyl)benzamide) was synthesized from the reaction of [Re(CO)5Br] with a two equivalents of Hpab in toluene. The monoanionic tridentate ligand daa was formed by the rhenium-mediated cleavage of an amido N-C bond of the potentially tetradentate ligand Hpab. Daa is coordinated as a diaminoamide via three nitrogen-donor atoms. The reaction of a twofold molar excess of H2amben (H2amben = N1,N2-bis(2-aminobenzylidene)ethane-1,2-diamine) with trans- [ReOBr3(PPh3)2] gave the oxorhenium(V) cationic complex [ReO(amben)]X (X = Br-, PF6 -). The Re(V) oxo-bridged compound, {μ-O}[ReO(omben)]2.H2O (H2omben = N1,N2- bis(2-hydroxybenzylidene)ethane-1,2-diamine) was isolated from the reaction of a 2:1 molar ratio of H2omben and trans-[ReO2(py)4]Cl in methanol. The seven-coordinate rhenium(III) complex cation [ReIII(dhp)(PPh3)2]+ was isolated as the [ReO4]- salt from the reaction of cis-[ReVO2I(PPh3)2] with 2,6-bis(2- hydroxyphenyliminomethyl)pyridine (H2dhp) in ethanol. In the complex fac- [Re(CO)3(H2dhp)Br], prepared from [Re(CO)5Br] and H2dhp in toluene, the H2dhp ligand acts as a neutral bidentate N,N-donor chelate. An equimolar ratio reaction of 2-aminobenzaldehyde and 2-(2-aminophenyl)-1- benzimidazole in methanol led to 2-(5,6-dihydrobenzimidazolo[1,2-c]-quinazolin-6- yl)aniline. In an attempt to explore the template formation of this class of ligand with rhenium, the reaction of salicylaldehyde and 2-(2-aminophenyl)-1-benzimidazole in ethanol which was followed by the addition of trans-[ReOBr3(PPh3)2] led to the formation of the salt, 6-(2-hydroxyphenyl)-5,6-dihydrobenzimidazolo[1,2-c]quinazolin- 12-ium bromide. The compound 6-(2-methylthiophenyl)-5,6-dihydrobenzimidazolo[1,2- c]quinazolin-12-ium was synthesized via the reaction of 2-aminobenzaldehyde and 2- methylthiobenzaldehyde in methanol.
- Full Text:
- Date Issued: 2009
- Authors: Booysen, Irvin Noel
- Date: 2009
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:10386 , http://hdl.handle.net/10948/1270 , Rhenium , Ligands
- Description: The complex trans-[Re(dab)Cl3(PPh3)2] (H2dab = 1,2-diaminobenzene) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2dab in ethanol. The ligand dab is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only in a distorted octahedral coordination geometry around the metal ion. The complex trans- [Re(ada)Cl3(PPh3)2] (H2ada = 2-aminodiphenylamine) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2ada in acetonitrile. The ligand ada is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. The ‘2 + 1’ complex fac- [Re(CO)3(Hamp)(amp)] (Hamp = 2-aminophenol) was isolated from the reaction of a two molar ratio of Hamp with [Re(CO)5Br] in toluene. The reaction of a 1:1 molar ratio of [Re(CO)5Br] and H2ada led to the isolation of the Re(I) complex, fac- [Re(CO)3Br(H2ada)]. The reaction of equimolar quantities of cis-[ReO2I(PPh3)2] with 5,6-diamino-1,3- dimethyluracil (H2ddd) in acetonitrile led to the formation of [Re(ddd)(Hddd)I(PPh3)2](ReO4). The X-ray crystal structure shows that the ligand ddd is coordinated monodentately through the doubly deprotonated amino nitrogen and is therefore present as an imide. The chelate Hddd is coordinated bidentately via the neutral amino nitrogen, which is coordinated trans to the imido nitrogen, and the singly deprotonated amido nitrogen, trans to the iodide. The reaction of trans-[ReOCl3(PPh3)2] with N-(2-aminobenzylidene)-5-amino-1,3-dimethyl uracil (H3dua) in ethanol gave a mixed crystal which contains both the neutral oxorhenium(V) complex [ReOCl(Hdua)] and the imido rhenium(V) [Re(dua)Cl2(PPh3)] in an equimolar ratio in the asymmetric unit. The reaction of equimolar quantities of [NH4(ReO4)] with H2ddd in methanol under reflux led to the isolation of [C12H12N6O4] as only product. The [ReO4]- anion is therefore instrumental in the formation of [C12H12N6O4], and since the product contains no rhenium in any oxidation state, the conclusion is that [ReO4]- catalyses the oxidative deamination Abstract I.N. Booysen Nelson Mandela Metropolitan University vii of H2ddd. The X-ray crystal structure consists of two centrosymmetric, tricyclic rings, comprising a central pyrazine ring and two terminal pyrimidine rings. The reaction of 2-(2-aminophenyl)benzothiazole (Habt) with [Re(CO)5Br] led to the isolation of the rhenium(I) complex fac-[Re(Habt)(CO)3Br]. With trans-[ReOCl3(PPh3)2], the ligand Habt decomposed to form the oxofree rhenium(V) complex [Re(itp)2Cl(PPh3)] (itp = 2-amidophenylthiolate). From the reaction of trans-[ReOBr3(PPh3)2] with 2-(2- hydroxyphenyl)benzothiazole (Hhpd) the complex [ReVOBr2(hpd)(PPh3)] was obtained. The reaction of a twofold molar excess of H2apb (2-(2-aminophenyl)-1-benzimidazole) with trans-[ReO2(py)4]Cl in ethanol gave the green product of formulation [ReO(Hapb)(apb)] in good yield. The rhenium atom lies in a distorted trigonalbipyramidal environment. The two imidazole N(2) atoms lie in the apical positions trans to each other, with the oxo-oxygen and two amido N(1) atoms in the trigonal plane. A new nitrosylrhenium(II) complex salt, [Re(NO)BrL2(PPh3)2](ReO4) (H2L2 = 2-amino-5- (triphenylphosphino)phenol), is the first example of a complex containing the triphenylphosphonium-amidophenolate ligand L2, formed by the nucleophilic attack of a PPh3 on a coordinated amidophenolate ring. The complex salt trans-[Re(mps)Cl(PPh3)2](ReO4) (H3mps = N-(2-amino-3- methylphenyl)salicylideneimine) was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps. The X-ray crystal structure shows that the trianionic ligand mps acts as a tridentate chelate via the doubly deprotonated amino nitrogen (an imide), the neutral imino nitrogen and the deprotonated phenolic oxygen. The six-coordinated complex cis-[Re(mps)Cl2(PPh3)2] was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps in benzene. The X-ray crystal structure show that the mps ligand coordinates as a tridentate chelate via the doubly deprotonated 2-amino nitrogen, the neutral imino nitrogen and the phenolate oxygen. The imide and phenolate oxygen coordinate trans to each other in a distorted octahedral geometry, around the rhenium(V) centre, with the two chlorides in cis positions. A new oxofree rhenium(V) complex salt, [Re(bbd)2](ReO4) ( H2bbd = N-(2- Abstract I.N. Booysen Nelson Mandela Metropolitan University viii aminobenzylidene)benzene-1,2-diamine), has been synthesized and the chelates bbd are coordinated as dianionic tridentate N,N,N-donor diamidoimines. The rhenium(V) ion is centered in a distorted trigonal prism. The rhenium(I) compound fac-[Re(CO)3(daa)].Hpab.H2O (Hpab = N1,N2-(1,2- phenylene)bis(2-aminobenzamide); Hdaa = 2-amino-N-(2-aminophenyl)benzamide) was synthesized from the reaction of [Re(CO)5Br] with a two equivalents of Hpab in toluene. The monoanionic tridentate ligand daa was formed by the rhenium-mediated cleavage of an amido N-C bond of the potentially tetradentate ligand Hpab. Daa is coordinated as a diaminoamide via three nitrogen-donor atoms. The reaction of a twofold molar excess of H2amben (H2amben = N1,N2-bis(2-aminobenzylidene)ethane-1,2-diamine) with trans- [ReOBr3(PPh3)2] gave the oxorhenium(V) cationic complex [ReO(amben)]X (X = Br-, PF6 -). The Re(V) oxo-bridged compound, {μ-O}[ReO(omben)]2.H2O (H2omben = N1,N2- bis(2-hydroxybenzylidene)ethane-1,2-diamine) was isolated from the reaction of a 2:1 molar ratio of H2omben and trans-[ReO2(py)4]Cl in methanol. The seven-coordinate rhenium(III) complex cation [ReIII(dhp)(PPh3)2]+ was isolated as the [ReO4]- salt from the reaction of cis-[ReVO2I(PPh3)2] with 2,6-bis(2- hydroxyphenyliminomethyl)pyridine (H2dhp) in ethanol. In the complex fac- [Re(CO)3(H2dhp)Br], prepared from [Re(CO)5Br] and H2dhp in toluene, the H2dhp ligand acts as a neutral bidentate N,N-donor chelate. An equimolar ratio reaction of 2-aminobenzaldehyde and 2-(2-aminophenyl)-1- benzimidazole in methanol led to 2-(5,6-dihydrobenzimidazolo[1,2-c]-quinazolin-6- yl)aniline. In an attempt to explore the template formation of this class of ligand with rhenium, the reaction of salicylaldehyde and 2-(2-aminophenyl)-1-benzimidazole in ethanol which was followed by the addition of trans-[ReOBr3(PPh3)2] led to the formation of the salt, 6-(2-hydroxyphenyl)-5,6-dihydrobenzimidazolo[1,2-c]quinazolin- 12-ium bromide. The compound 6-(2-methylthiophenyl)-5,6-dihydrobenzimidazolo[1,2- c]quinazolin-12-ium was synthesized via the reaction of 2-aminobenzaldehyde and 2- methylthiobenzaldehyde in methanol.
- Full Text:
- Date Issued: 2009
Rhenium(V)-Imido complexes with potentially multidentate ligands containing the amino group
- Authors: Booysen, Irvin Noel
- Date: 2007
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10385 , http://hdl.handle.net/10948/479 , Rhenium , Ligands
- Description: The complex trans-[Re(dab)Cl3(PPh3)2] (H2dab=1,2-diaminobenzene) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2dab in ethanol. The ligand dab is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. The complex trans-[Re(ada)Cl3(PPh3)2] (H2ada=2-aminodiphenylamine) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2ada in acetonitrile. The ligand ada is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. Surprisingly, the Re-Cl bond length trans to the Re=N bond is shorter than the two equatorial Re-Cl bond lengths. The reaction of equimolar quantities of cis-[ReO2I(PPh3)2] with 5,6-diamino-1,3- dimethyluracil (H2ddd) in acetonitrile led to the formation of [Re(ddd)(Hddd)I(PPh3)2](ReO4). The X-ray crystal structure shows that the ligand ddd is coordinated monodentately through the doubly deprotonated amino nitrogen and is therefore present as an imide. The chelate Hddd is coordinated bidentately via the neutral amino nitrogen, which is coordinated trans to the imido nitrogen, and the singly deprotonated amido nitrogen, trans to the iodide. The reaction of equimolar quantities of [NH4(ReO4)] with H2ddd in methanol under reflux conditions led to the isolation of [C12H12N6O4] as only product. The [ReO4]- ion is therefore instrumental in the formation of [C12H12N6O4], and since the product contains no rhenium in any oxidation state, the conclusion is that [ReO4]- catalyses the oxidative deamination of H2ddd. The X-ray crystal structure consists of two centrosymmetric, tricyclic rings, comprising a central pyrazine ring and two terminal pyrimidine rings. The reaction of a twofold molar excess of H2apb (H2apb=2-(2-aminophenyl)-1Hbenzimidazole) with trans-[ReO2(py)4]Cl in ethanol gave the green product of the formulation [ReO(Hapb)(apb)] in good yield. The rhenium atom lies in a distorted trigonal-bipyramidal environment. The two imidazole N(2) atoms lie in the apical positions trans to each other, with the oxo-oxygen and two amido N(1) atoms in the trigonal plane. The complex has C2-symmetry. The two amino groups are singly deprotonated and provide a negative charge each, so that they are coordinated as amides. The oxo group provides two negative charges. In order to obtain electroneutrality for the rhenium(V) complex, the two coordinated imidazole nitrogens provide one negative charge. The complex salt trans-[Re(mps)Cl(PPh3)2](ReO4) (H3mps=N-(2-amino-3- methylphenyl)salicylideneimine) was prepared by the reaction of trans- [ReOCl3(PPh3)2] with a twofold molar excess of H3mps. The X-ray crystal structure shows that the trianionic ligand mps acts as a tridentate chelate via the doubly deprotonated amino nitrogen (which is present in trans- [Re(mps)Cl(PPh3)2](ReO4) as an imide), the neutral imino nitrogen and the deprotonated phenolic oxygen. The [ReO4]- anion has approximately regular tetrahedral geometry. Two significant hydrogen bonds are formed between two of the perrhenyl oxygens and the water of crystallization. The six-coordinated complex cis-[Re(mps)Cl2(PPh3)2] was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps in benzene. The Xray crystal structure shows that the mps ligand coordinates as a tridentate chelate via the doubly deprotonated 2-amino nitrogen, the neutral imino nitrogen and the phenolate oxygen. The imide and phenolate oxygen coordinate trans to each other in a distorted octahedral geometry around the rhenium(V) centre, with the two chlorides in cis positions.
- Full Text:
- Date Issued: 2007
- Authors: Booysen, Irvin Noel
- Date: 2007
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10385 , http://hdl.handle.net/10948/479 , Rhenium , Ligands
- Description: The complex trans-[Re(dab)Cl3(PPh3)2] (H2dab=1,2-diaminobenzene) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2dab in ethanol. The ligand dab is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. The complex trans-[Re(ada)Cl3(PPh3)2] (H2ada=2-aminodiphenylamine) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2ada in acetonitrile. The ligand ada is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. Surprisingly, the Re-Cl bond length trans to the Re=N bond is shorter than the two equatorial Re-Cl bond lengths. The reaction of equimolar quantities of cis-[ReO2I(PPh3)2] with 5,6-diamino-1,3- dimethyluracil (H2ddd) in acetonitrile led to the formation of [Re(ddd)(Hddd)I(PPh3)2](ReO4). The X-ray crystal structure shows that the ligand ddd is coordinated monodentately through the doubly deprotonated amino nitrogen and is therefore present as an imide. The chelate Hddd is coordinated bidentately via the neutral amino nitrogen, which is coordinated trans to the imido nitrogen, and the singly deprotonated amido nitrogen, trans to the iodide. The reaction of equimolar quantities of [NH4(ReO4)] with H2ddd in methanol under reflux conditions led to the isolation of [C12H12N6O4] as only product. The [ReO4]- ion is therefore instrumental in the formation of [C12H12N6O4], and since the product contains no rhenium in any oxidation state, the conclusion is that [ReO4]- catalyses the oxidative deamination of H2ddd. The X-ray crystal structure consists of two centrosymmetric, tricyclic rings, comprising a central pyrazine ring and two terminal pyrimidine rings. The reaction of a twofold molar excess of H2apb (H2apb=2-(2-aminophenyl)-1Hbenzimidazole) with trans-[ReO2(py)4]Cl in ethanol gave the green product of the formulation [ReO(Hapb)(apb)] in good yield. The rhenium atom lies in a distorted trigonal-bipyramidal environment. The two imidazole N(2) atoms lie in the apical positions trans to each other, with the oxo-oxygen and two amido N(1) atoms in the trigonal plane. The complex has C2-symmetry. The two amino groups are singly deprotonated and provide a negative charge each, so that they are coordinated as amides. The oxo group provides two negative charges. In order to obtain electroneutrality for the rhenium(V) complex, the two coordinated imidazole nitrogens provide one negative charge. The complex salt trans-[Re(mps)Cl(PPh3)2](ReO4) (H3mps=N-(2-amino-3- methylphenyl)salicylideneimine) was prepared by the reaction of trans- [ReOCl3(PPh3)2] with a twofold molar excess of H3mps. The X-ray crystal structure shows that the trianionic ligand mps acts as a tridentate chelate via the doubly deprotonated amino nitrogen (which is present in trans- [Re(mps)Cl(PPh3)2](ReO4) as an imide), the neutral imino nitrogen and the deprotonated phenolic oxygen. The [ReO4]- anion has approximately regular tetrahedral geometry. Two significant hydrogen bonds are formed between two of the perrhenyl oxygens and the water of crystallization. The six-coordinated complex cis-[Re(mps)Cl2(PPh3)2] was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps in benzene. The Xray crystal structure shows that the mps ligand coordinates as a tridentate chelate via the doubly deprotonated 2-amino nitrogen, the neutral imino nitrogen and the phenolate oxygen. The imide and phenolate oxygen coordinate trans to each other in a distorted octahedral geometry around the rhenium(V) centre, with the two chlorides in cis positions.
- Full Text:
- Date Issued: 2007
Cannabidiol: extraction and purification using flow Chemistry
- Authors: Bopape, Karabo
- Date: 2022-04
- Subjects: Supercritical fluid extraction -- South Africa , Cannabis -- Therapeutic use
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55723 , vital:53410
- Description: cannabinoids are of growing interest in research and pharmaceutical applications. Cannabidiol, which is a non-psychoactive cannabinoid, has many pharmaceutical applications. The current and main source of cannabidiol and other cannabinoids is from cannabis and hemp extractions. Current extraction methods involve the use of conventional solvent extraction, which employs the use of organic solvents, in some cases along with mechanical assistance from various equipment. Alternatively, another widely used extraction method is the use of supercritical extraction fluids (SC-CO2 being the most common). An alternative method, which uses chemical synthesis to derivatize cannabidiol to form an intermediate, which is crystalline and can easily be isolated from the extract; the crystalline intermediate can then be deprotected back to pure cannabidiol. In this research, we investigated and adapted the crystallisation method (originally employed by Adams) into continuous flow. In this research, hemp extracts and oilsrich in CBD were used as the source for cannabidiol. This synthesis was adapted into microreactors to synthesise the crystalline intermediate ester product (cannabidiol-3,5-bis-benzoate) which was subsequently reacted in a saponification ester hydrolysis to convert back and isolate pure CBD using continuous flow microreactor technology. Chapter one gives a comprehensive literature review and background on cannabidiol, along with its chemistry and pharmacological benefits in addition to a brief introduction to continuous flow technology with its advantages. Chapter two details the experimental procedures utilised for both batch and continuous flow syntheses. The continuous flow synthesis and subsequent hydrolysis of the ester intermediate, which shows the improvements in comparison to batch; giving higher product recovery (63% CBD), in shorter reaction times (2.5 min for CBD bis-benzoate; 30 min for CBD) is subsequently presented. This is expanded in chapter three with detailed discussions of the results attained during the continuous flow. The concluding remarks, the impact of this study and future work are elucidated in chapter four. , Thesis (MSc) -- Faculty of Science, Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Bopape, Karabo
- Date: 2022-04
- Subjects: Supercritical fluid extraction -- South Africa , Cannabis -- Therapeutic use
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55723 , vital:53410
- Description: cannabinoids are of growing interest in research and pharmaceutical applications. Cannabidiol, which is a non-psychoactive cannabinoid, has many pharmaceutical applications. The current and main source of cannabidiol and other cannabinoids is from cannabis and hemp extractions. Current extraction methods involve the use of conventional solvent extraction, which employs the use of organic solvents, in some cases along with mechanical assistance from various equipment. Alternatively, another widely used extraction method is the use of supercritical extraction fluids (SC-CO2 being the most common). An alternative method, which uses chemical synthesis to derivatize cannabidiol to form an intermediate, which is crystalline and can easily be isolated from the extract; the crystalline intermediate can then be deprotected back to pure cannabidiol. In this research, we investigated and adapted the crystallisation method (originally employed by Adams) into continuous flow. In this research, hemp extracts and oilsrich in CBD were used as the source for cannabidiol. This synthesis was adapted into microreactors to synthesise the crystalline intermediate ester product (cannabidiol-3,5-bis-benzoate) which was subsequently reacted in a saponification ester hydrolysis to convert back and isolate pure CBD using continuous flow microreactor technology. Chapter one gives a comprehensive literature review and background on cannabidiol, along with its chemistry and pharmacological benefits in addition to a brief introduction to continuous flow technology with its advantages. Chapter two details the experimental procedures utilised for both batch and continuous flow syntheses. The continuous flow synthesis and subsequent hydrolysis of the ester intermediate, which shows the improvements in comparison to batch; giving higher product recovery (63% CBD), in shorter reaction times (2.5 min for CBD bis-benzoate; 30 min for CBD) is subsequently presented. This is expanded in chapter three with detailed discussions of the results attained during the continuous flow. The concluding remarks, the impact of this study and future work are elucidated in chapter four. , Thesis (MSc) -- Faculty of Science, Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-04
An appraisal of warm temperate mangrove estuaries as food patches using zooplankton and RNA: DNA ratios of Gilchristella aestuaria larvae as indicators
- Authors: Bornman, Eugin
- Date: 2018
- Subjects: Mangrove swamps Fishes -- Larvae , Mangrove ecology , Zooplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17908 , vital:28481
- Description: Mangrove habitats are considered as the ideal fish nursery as they are known to increase the growth and survival of juvenile fishes by providing enhanced food availability and protection. However, most studies have focused on tropical mangroves with a few recent warm temperate studies finding conflicting results. Furthermore, the nursery value of South African mangroves to fishes remain understudied in subtropical areas, while warm temperate mangroves are yet to be evaluated. This study aimed to assess whether mangrove presence leads to any advantage to the larvae of an important estuarine resident fish species, Gilchristella aestuaria, by comparing the food patch quality of South African warm temperate mangrove and non-mangrove estuaries. Results indicate that larvae fed primarily on the dominant prey species, Pseudodiaptomus hessei, Paracrtia longipatella, and Acartiella natalensis. However, postflexion larvae consumed more of the larger species, P. hessei, within the two mangrove estuaries (16.09 %V in Nahoon and 13.79 %V in Xhora) than the two nonmangrove estuaries (12.20 %V in Gonubie and 7.05 %V in Qora), despite other prey species occurring at similar densities. Results indicate that mangrove habitats acted as sediment sinks, slightly reducing the turbidity of these estuaries which resulted in postflexion larvae actively selecting larger, more nutritious prey, which in turn, significantly increased their individual instantaneous growth rates (0.11 ± 0.21 Gi) when compared to postflexion larvae in non-mangrove estuaries (0.09 ± 0.12 Gi). This study found that mangrove presence was significantly related to postflexion larval densities when coupled with abiotic (such as temperature and turbidity) and biotic factors (such as predator-prey interactions). Understanding the spatial and temporal dynamics, predator-prey interactions as well as the growth and survival of G. aestuaria is particularly important as they are key zooplanktivores that are prey to other species in estuarine food webs.
- Full Text:
- Date Issued: 2018
- Authors: Bornman, Eugin
- Date: 2018
- Subjects: Mangrove swamps Fishes -- Larvae , Mangrove ecology , Zooplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17908 , vital:28481
- Description: Mangrove habitats are considered as the ideal fish nursery as they are known to increase the growth and survival of juvenile fishes by providing enhanced food availability and protection. However, most studies have focused on tropical mangroves with a few recent warm temperate studies finding conflicting results. Furthermore, the nursery value of South African mangroves to fishes remain understudied in subtropical areas, while warm temperate mangroves are yet to be evaluated. This study aimed to assess whether mangrove presence leads to any advantage to the larvae of an important estuarine resident fish species, Gilchristella aestuaria, by comparing the food patch quality of South African warm temperate mangrove and non-mangrove estuaries. Results indicate that larvae fed primarily on the dominant prey species, Pseudodiaptomus hessei, Paracrtia longipatella, and Acartiella natalensis. However, postflexion larvae consumed more of the larger species, P. hessei, within the two mangrove estuaries (16.09 %V in Nahoon and 13.79 %V in Xhora) than the two nonmangrove estuaries (12.20 %V in Gonubie and 7.05 %V in Qora), despite other prey species occurring at similar densities. Results indicate that mangrove habitats acted as sediment sinks, slightly reducing the turbidity of these estuaries which resulted in postflexion larvae actively selecting larger, more nutritious prey, which in turn, significantly increased their individual instantaneous growth rates (0.11 ± 0.21 Gi) when compared to postflexion larvae in non-mangrove estuaries (0.09 ± 0.12 Gi). This study found that mangrove presence was significantly related to postflexion larval densities when coupled with abiotic (such as temperature and turbidity) and biotic factors (such as predator-prey interactions). Understanding the spatial and temporal dynamics, predator-prey interactions as well as the growth and survival of G. aestuaria is particularly important as they are key zooplanktivores that are prey to other species in estuarine food webs.
- Full Text:
- Date Issued: 2018
Impacts of algal blooms in a temperate Estuarine fish nursery area, South Africa
- Authors: Bornman, Eugin
- Date: 2022-04
- Subjects: Cyanobacterial toxins --Environmental aspects , Estuarine eutrophication --South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55899 , vital:54398
- Description: Anthropogenically-derived eutrophication and Harmful Algal Blooms (HABs) are an increasing threat to estuarine ecosystems globally. The rapid population growth in coastal areas and the mismanagement of water resources have led to the rapid increase in eutrophication in estuaries. Consequently, HABs have become frequent phenomena with severe impacts on the ecological functioning of these systems. A paucity exists in understanding the specific mechanisms of how HABs impact estuarine communities globally. This has not been studied in South Africa, despite the observed increase in the occurrence of HABs in the past few decades. Therefore, this study investigated the impact of HABs on the ecological functioning of the anthropogenically altered Sundays Estuary, South Africa, which is affected by predictable and recurrent HABs of the raphidophyte, Heterosigma akashiwo. This study found that a high density (> 1000 cell m L-1 ) of H. akashiwo was present during all but the winter months in the poly- to mesohaline zone, yet it peaked in warmer spring/summer months with a density of ca. 70 000 cell m L-1 corresponding to 800 µg Chl-a L -1 . This species significantly altered the estuary's water quality, causing supersaturated surface- and hypoxic bottom-water during severe HABs or referred to as hypereutrophic bloom phases (> 60 µg Chl-a L -1 ). Despite these changes, the common copepod, Pseudodiaptomus hessei, occurred at similar densities among HAB phases and responded to similar triggers to the HAB. However, a shift in predator-prey interactions within the zooplankton community was evident, with scavenger or opportunist species such as the isopod, Cirolana fluviatilis, and the polychaete, Perinereis falsovariegata, occurring at higher densities during hypereutrophic bloom phases. The overall abundance of juvenile and small adult fishes were high during HABs, but the diversity decreased during HABs. Some species, notably the Mugilidae occurred at lower densities during HABs. Mugilidae also had pronounced histological gill alterations and a lowered proportion of secondary lamellae available for gas exchange during an in situ cage experiment where fishes were isolated inside and outside the HAB. Deformities such as tumorous growths were also found for the first time in a South African Estuary. This indicated a stressed population of Mugilidae in the Sundays Estuary. The ubiquitous mugilid, Mugil cephalus, actively avoided HABs during an acoustic telemetry study, despite having a home range that overlapped the HAB area. Tagged individuals mostly occupied areas directly above the HAB in the upper mesohaline to lower oligohaline zones and only iv briefly transitioned through the HAB area to utilise the lower reaches of the estuary. Since the formation of HABs is reliant on various factors, including specific species responses, environmental variables, nutrient enrichment, and flow characteristics, the impacts of HABs on estuarine communities may vary between estuarine systems or affected species. Therefore, more research that focuses on the impacts of HABs on estuaries is needed to limit the potential loss of ecosystem services. Particularly in light of further unsustainable development, upstream freshwater abstraction and climate change, will cause more frequent and severe HABs, that may result in fish population declines in the long-term. Better management and mitigation strategies are needed to reduce HAB formation such as reducing nutrient enrichment and restoring natural freshwater flow and flooding events to the Sundays Estuary. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Bornman, Eugin
- Date: 2022-04
- Subjects: Cyanobacterial toxins --Environmental aspects , Estuarine eutrophication --South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55899 , vital:54398
- Description: Anthropogenically-derived eutrophication and Harmful Algal Blooms (HABs) are an increasing threat to estuarine ecosystems globally. The rapid population growth in coastal areas and the mismanagement of water resources have led to the rapid increase in eutrophication in estuaries. Consequently, HABs have become frequent phenomena with severe impacts on the ecological functioning of these systems. A paucity exists in understanding the specific mechanisms of how HABs impact estuarine communities globally. This has not been studied in South Africa, despite the observed increase in the occurrence of HABs in the past few decades. Therefore, this study investigated the impact of HABs on the ecological functioning of the anthropogenically altered Sundays Estuary, South Africa, which is affected by predictable and recurrent HABs of the raphidophyte, Heterosigma akashiwo. This study found that a high density (> 1000 cell m L-1 ) of H. akashiwo was present during all but the winter months in the poly- to mesohaline zone, yet it peaked in warmer spring/summer months with a density of ca. 70 000 cell m L-1 corresponding to 800 µg Chl-a L -1 . This species significantly altered the estuary's water quality, causing supersaturated surface- and hypoxic bottom-water during severe HABs or referred to as hypereutrophic bloom phases (> 60 µg Chl-a L -1 ). Despite these changes, the common copepod, Pseudodiaptomus hessei, occurred at similar densities among HAB phases and responded to similar triggers to the HAB. However, a shift in predator-prey interactions within the zooplankton community was evident, with scavenger or opportunist species such as the isopod, Cirolana fluviatilis, and the polychaete, Perinereis falsovariegata, occurring at higher densities during hypereutrophic bloom phases. The overall abundance of juvenile and small adult fishes were high during HABs, but the diversity decreased during HABs. Some species, notably the Mugilidae occurred at lower densities during HABs. Mugilidae also had pronounced histological gill alterations and a lowered proportion of secondary lamellae available for gas exchange during an in situ cage experiment where fishes were isolated inside and outside the HAB. Deformities such as tumorous growths were also found for the first time in a South African Estuary. This indicated a stressed population of Mugilidae in the Sundays Estuary. The ubiquitous mugilid, Mugil cephalus, actively avoided HABs during an acoustic telemetry study, despite having a home range that overlapped the HAB area. Tagged individuals mostly occupied areas directly above the HAB in the upper mesohaline to lower oligohaline zones and only iv briefly transitioned through the HAB area to utilise the lower reaches of the estuary. Since the formation of HABs is reliant on various factors, including specific species responses, environmental variables, nutrient enrichment, and flow characteristics, the impacts of HABs on estuarine communities may vary between estuarine systems or affected species. Therefore, more research that focuses on the impacts of HABs on estuaries is needed to limit the potential loss of ecosystem services. Particularly in light of further unsustainable development, upstream freshwater abstraction and climate change, will cause more frequent and severe HABs, that may result in fish population declines in the long-term. Better management and mitigation strategies are needed to reduce HAB formation such as reducing nutrient enrichment and restoring natural freshwater flow and flooding events to the Sundays Estuary. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
Production of biologically active recombinant HIV-1 protease and intehrase for the purpose of screening medicianl plant extracts
- Authors: Bosch, Janine
- Date: 2009
- Subjects: Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10325 , http://hdl.handle.net/10948/1056 , Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: Human immunodeficiency virus (HIV) and its gradual weakening of the immune system is an ever growing threat. Acquired immune deficiency syndrome (AIDS), the final stage of HIV, renders a person vulnerable to various opportunistic infections, which in the end lead to death. Apart from intensive vaccine studies, treatment research mainly focuses on preventing the individual HIV enzymes (reverse transcriptase, integrase and protease) from performing their functions. Entry inhibitors, however, block viral entry into the cell, while antisense drugs lock onto the viral genome to keep it from functioning. In this study production of active recombinant HIV-1 protease and integrase was attempted for future drug screening programs. HIV-1 protease was cloned into a pET28b(+) vector and expressed in ROSETTA(DE3)pLysS cells. The protein was purified using a nickel-affinity column utilizing the hexa-histidine tag encoded by the vector. Gel filtration chromatography was attempted after refolding of the protease, but protease yield seemed to decrease with the additional purification step. Partially purified protease was characterized with kinetic studies. Kinetic parameters of HIV-1 protease were determined to be Km = 592 μM, Vmax = 0.59 μM/min and kcat = 31 s-1. HIV-1 integrase, which was cloned into a pET15b vector, was expressed in E. coli BL21(DE3) cells. The coding sequence had been mutated to introduce the amino acid substitutions F185K and C280S, increasing solubility of the protein. The first step in purification of this protein was nickel-affinity chromatography, after which cation exchange chromatography was attempted. HIV-1 integrase concentration was low throughout experiments and no clear elution from the cation exchange column could be observed. A non-radioactive enzyme linked HIV-1 integrase assay failed to detect integrase activity. Modifications to future studies of the integrase are suggested in the chapter involved.
- Full Text:
- Date Issued: 2009
- Authors: Bosch, Janine
- Date: 2009
- Subjects: Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10325 , http://hdl.handle.net/10948/1056 , Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: Human immunodeficiency virus (HIV) and its gradual weakening of the immune system is an ever growing threat. Acquired immune deficiency syndrome (AIDS), the final stage of HIV, renders a person vulnerable to various opportunistic infections, which in the end lead to death. Apart from intensive vaccine studies, treatment research mainly focuses on preventing the individual HIV enzymes (reverse transcriptase, integrase and protease) from performing their functions. Entry inhibitors, however, block viral entry into the cell, while antisense drugs lock onto the viral genome to keep it from functioning. In this study production of active recombinant HIV-1 protease and integrase was attempted for future drug screening programs. HIV-1 protease was cloned into a pET28b(+) vector and expressed in ROSETTA(DE3)pLysS cells. The protein was purified using a nickel-affinity column utilizing the hexa-histidine tag encoded by the vector. Gel filtration chromatography was attempted after refolding of the protease, but protease yield seemed to decrease with the additional purification step. Partially purified protease was characterized with kinetic studies. Kinetic parameters of HIV-1 protease were determined to be Km = 592 μM, Vmax = 0.59 μM/min and kcat = 31 s-1. HIV-1 integrase, which was cloned into a pET15b vector, was expressed in E. coli BL21(DE3) cells. The coding sequence had been mutated to introduce the amino acid substitutions F185K and C280S, increasing solubility of the protein. The first step in purification of this protein was nickel-affinity chromatography, after which cation exchange chromatography was attempted. HIV-1 integrase concentration was low throughout experiments and no clear elution from the cation exchange column could be observed. A non-radioactive enzyme linked HIV-1 integrase assay failed to detect integrase activity. Modifications to future studies of the integrase are suggested in the chapter involved.
- Full Text:
- Date Issued: 2009
Development of a degreasing and anti-fogging formulation for wet wipe application for automotive glass surfaces
- Authors: Bosch, Tanya
- Date: 2012
- Subjects: Porous materials -- Transport properties , Hydrophobic surfaces , Vapor degreasing , Cleaning compounds , Water-soluble polymers
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: vital:10418 , http://hdl.handle.net/10948/d1013177
- Description: It was the objective of this project to provide a glass cleaner formulation for a wet wipe application with cleaning and anti-fogging properties. This glass cleaner formulation was developed for automotive glass i.e. interior of windscreens. This formulation relates to a glass cleaner with a composition comprising of: (a) a blend of amphoteric surfactants; (b) a solvent system with a combination of glycol ethers; and (c) an aqueous solvent system. This glass formulation must provide good cleaning properties while also providing good wetting and sheeting properties to assist with anti-fogging properties. The objectives were obtained using 2 specific approaches: The first was by using a blend of 2 amphoteric surfactants in an alkaline medium, allowing the glass surface to become more hydrophilic which will also assist with reduction of surface tension on the glass surface. The second was by using the glycol ethers that have good coupling properties and surface tension reducing properties. The formulation was evaluated using commercial standard test methods as per the industry. A predictive model was successfully obtained for each of the five criteria that were evaluated using the 25 formulations derived from the statistical design. There were variables and variable interactions that were antagonistic for some of the criteria which were found to be synergistic for others. To achieve satisfactory cleaning, the fogging rating had to be compromised.
- Full Text:
- Date Issued: 2012
- Authors: Bosch, Tanya
- Date: 2012
- Subjects: Porous materials -- Transport properties , Hydrophobic surfaces , Vapor degreasing , Cleaning compounds , Water-soluble polymers
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: vital:10418 , http://hdl.handle.net/10948/d1013177
- Description: It was the objective of this project to provide a glass cleaner formulation for a wet wipe application with cleaning and anti-fogging properties. This glass cleaner formulation was developed for automotive glass i.e. interior of windscreens. This formulation relates to a glass cleaner with a composition comprising of: (a) a blend of amphoteric surfactants; (b) a solvent system with a combination of glycol ethers; and (c) an aqueous solvent system. This glass formulation must provide good cleaning properties while also providing good wetting and sheeting properties to assist with anti-fogging properties. The objectives were obtained using 2 specific approaches: The first was by using a blend of 2 amphoteric surfactants in an alkaline medium, allowing the glass surface to become more hydrophilic which will also assist with reduction of surface tension on the glass surface. The second was by using the glycol ethers that have good coupling properties and surface tension reducing properties. The formulation was evaluated using commercial standard test methods as per the industry. A predictive model was successfully obtained for each of the five criteria that were evaluated using the 25 formulations derived from the statistical design. There were variables and variable interactions that were antagonistic for some of the criteria which were found to be synergistic for others. To achieve satisfactory cleaning, the fogging rating had to be compromised.
- Full Text:
- Date Issued: 2012
Effect of livestock management and services to ecosystems on rangeland health and resilience in the NamaKaroo
- Authors: Boshoff, Mishak
- Date: 2023-04
- Subjects: Livestock – Management --South Africa—Karoo , Range ecology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/60611 , vital:66017
- Description: Rangelands offer great opportunities for mutualisms between nature conservation and economic productivity if positive feedback loops can be identified and described. The effects of different livestock management practices are controversial. This research examined the effect of different grazing intensities on soil health using springtails (Collembola) and ants (Formicidae) as bioindicators, combined with soil and vegetation variables. The relationship between rangeland managers and rangeland ecosystems, particularly with regard to feedback loops between land care and economic production, was also investigated. Bioindicator samples were collected at different treatments of livestock grazing intensity and a questionnaire was submitted to 65 rangeland managers in the semi-arid Nama-Karoo biome of South Africa. In most cases we found no significant relationship between grazing intensity and Collembola and ant community composition, vegetation variables, and soil variables. The few significant relationships we found were contradictory in their implications for the effect of high intensity grazing on soil health. The results suggested that differences in livestock management are relatively unimportant for soil health, at least in semi-arid systems under conditions immediately following a drought. The questionnaire yielded results on outline of management practices, basis of management decisions, consequences of monitoring veld to inform management decisions, and indicators of successful management. Respondents characterized by higher ecological fluency focused on livestock production when making management decisions, stocked at higher densities, and monitored the rangeland ecosystem to inform their decisions. For monitoring the ecosystem, they used bioindicators such as diversity of biota, successional stage, and ecologically important functional groups. We concluded that the development of ecological knowledge in rangeland managers enables the establishment of feedback loops between ecosystem services and services to ecosystems, which are desirable for economic productivity and nature conservation. Development of relevant ecological knowledge and management techniques should be based on forums and dialogue among rangeland managers, developing distributed cognition and resilience in the community of rangeland managers. , Thesis (MSc) -- Faculty of Science, School Natural Resource Science and Management, 2023
- Full Text:
- Date Issued: 2023-04
- Authors: Boshoff, Mishak
- Date: 2023-04
- Subjects: Livestock – Management --South Africa—Karoo , Range ecology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/60611 , vital:66017
- Description: Rangelands offer great opportunities for mutualisms between nature conservation and economic productivity if positive feedback loops can be identified and described. The effects of different livestock management practices are controversial. This research examined the effect of different grazing intensities on soil health using springtails (Collembola) and ants (Formicidae) as bioindicators, combined with soil and vegetation variables. The relationship between rangeland managers and rangeland ecosystems, particularly with regard to feedback loops between land care and economic production, was also investigated. Bioindicator samples were collected at different treatments of livestock grazing intensity and a questionnaire was submitted to 65 rangeland managers in the semi-arid Nama-Karoo biome of South Africa. In most cases we found no significant relationship between grazing intensity and Collembola and ant community composition, vegetation variables, and soil variables. The few significant relationships we found were contradictory in their implications for the effect of high intensity grazing on soil health. The results suggested that differences in livestock management are relatively unimportant for soil health, at least in semi-arid systems under conditions immediately following a drought. The questionnaire yielded results on outline of management practices, basis of management decisions, consequences of monitoring veld to inform management decisions, and indicators of successful management. Respondents characterized by higher ecological fluency focused on livestock production when making management decisions, stocked at higher densities, and monitored the rangeland ecosystem to inform their decisions. For monitoring the ecosystem, they used bioindicators such as diversity of biota, successional stage, and ecologically important functional groups. We concluded that the development of ecological knowledge in rangeland managers enables the establishment of feedback loops between ecosystem services and services to ecosystems, which are desirable for economic productivity and nature conservation. Development of relevant ecological knowledge and management techniques should be based on forums and dialogue among rangeland managers, developing distributed cognition and resilience in the community of rangeland managers. , Thesis (MSc) -- Faculty of Science, School Natural Resource Science and Management, 2023
- Full Text:
- Date Issued: 2023-04
Reproductive co-existence among five sympatric single-stemmed aloes in the Gamtoos River Valley, Eastern Cape
- Authors: Botes, Christo
- Date: 2007
- Subjects: Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10628 , http://hdl.handle.net/10948/481 , Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Description: In this study I documented the convergence of five congeneric bird-pollinated plants (Aloe pluridens, A. lineata var. muirii, A. speciosa, A. africana, and A. ferox) into three functional groups based on size, shape, and the arrangements of flowers on the inflorescence, but also nectar rewards, pollen deposition sites on the bird-pollinators, and the degree to which bees play a role in their pollination. Individuals of similar functional groups were divergent in their peak flowering times and limited their degree of flowering overlap further by spatial aggregation and niche separation, within the Thicket of the Gamtoos River Valley. The nectar properties were especially useful in structuring the bird pollinator community, which resulted in greater ethological isolation and hence, greater reproductive assurance in the mixed co-flowering plant communities. Choice array experiments revealed that it was the fine scale aggregation of flowering individuals that ensured that bird-pollinators feed selectively, since when equal choice was available, interspecific visitation increased significantly compared to natural scenarios. Bird behaviour and the ecological intermediateness of one to the species explained its prominence in hybrid combinations. The spatial occurrence of hybrid individuals can be traced back to the energetics of foraging and its influence on bird floral constancy. The pollination ecology of similar South African Aloe species were extrapolated from these and recent findings by various authors, but emphasises the need for a robust natural phylogeny of the Aloaceae in order to draw comprehensive conclusions on the evolutionary radiation of this highly charismatic group.
- Full Text:
- Date Issued: 2007
- Authors: Botes, Christo
- Date: 2007
- Subjects: Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10628 , http://hdl.handle.net/10948/481 , Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Description: In this study I documented the convergence of five congeneric bird-pollinated plants (Aloe pluridens, A. lineata var. muirii, A. speciosa, A. africana, and A. ferox) into three functional groups based on size, shape, and the arrangements of flowers on the inflorescence, but also nectar rewards, pollen deposition sites on the bird-pollinators, and the degree to which bees play a role in their pollination. Individuals of similar functional groups were divergent in their peak flowering times and limited their degree of flowering overlap further by spatial aggregation and niche separation, within the Thicket of the Gamtoos River Valley. The nectar properties were especially useful in structuring the bird pollinator community, which resulted in greater ethological isolation and hence, greater reproductive assurance in the mixed co-flowering plant communities. Choice array experiments revealed that it was the fine scale aggregation of flowering individuals that ensured that bird-pollinators feed selectively, since when equal choice was available, interspecific visitation increased significantly compared to natural scenarios. Bird behaviour and the ecological intermediateness of one to the species explained its prominence in hybrid combinations. The spatial occurrence of hybrid individuals can be traced back to the energetics of foraging and its influence on bird floral constancy. The pollination ecology of similar South African Aloe species were extrapolated from these and recent findings by various authors, but emphasises the need for a robust natural phylogeny of the Aloaceae in order to draw comprehensive conclusions on the evolutionary radiation of this highly charismatic group.
- Full Text:
- Date Issued: 2007
The management of chacma baboons and humans in a peri-urban environment: a case study from Nelson Mandela Metropolitan University's George Campus
- Authors: Botes, Peet
- Date: 2016
- Subjects: Human-animal relationships , Animal behavior , Human beings , Bestiality
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/5135 , vital:20812
- Description: Conflicts between humans and baboons (Papio ursinus) have become a significant management challenge on Nelson Mandela Metropolitan University’s (NMMUs) George Campus, which is located in peri-urban George in the Garden Route, of the Western Cape of South Africa. Current management policy, although required to be ‘scientifically’ based, largely relies on studies done outside the Garden Route. This study addresses the question of how the management of human-baboon relations could be improved on the campus. A case study was undertaken which aimed at addressing the cohabitation of baboons and humans on the NMMU campus, specifically human-baboon resource selection and interaction. The research methodology and the related analytical tools were primarily quantitative but were supplemented by some qualitative data drawn from interviews. Data collected was used to determine landscape features acting as Keystone Resource Areas (KRAs) for both humans and baboons on the campus. Relationships between the frequency and location of negative interactions, and resident-baboon distribution on the campus were also determined. Two key findings emerged from the research. First, residences, non-residence buildings and waste disposal stations act as KRAs for both humans and baboons. Second, the frequency of negative interaction correlates with the time spent by residents and baboons at residences, where common negative interactions between baboons and humans are known to occur. It is postulated that cohabitation on the NMMU George Campus is causing the habituation of baboons, a loss of fear of humans and association of humans with high energy foods. As a result, present cohabitation contributes to negative human-baboon relations in the George area. To ensure sustainable co-existence between humans and baboons on the George Campus, management should implement zonation and wildlife monitoring to reverse the loss of baboon fear of humans and better limit the availability of human-derived foods. In addition, management should consider giving stakeholders co-management roles to foster and facilitate knowledge and responsibility partnerships, and subsequently correct any misunderstandings related to human-baboon relations on the campus. Recommendations for further research include sampling beyond campus boundaries to compensate for regional variations in baboon behaviour and the biophysical environment.
- Full Text:
- Date Issued: 2016
- Authors: Botes, Peet
- Date: 2016
- Subjects: Human-animal relationships , Animal behavior , Human beings , Bestiality
- Language: English
- Type: Thesis , Masters , MTech
- Identifier: http://hdl.handle.net/10948/5135 , vital:20812
- Description: Conflicts between humans and baboons (Papio ursinus) have become a significant management challenge on Nelson Mandela Metropolitan University’s (NMMUs) George Campus, which is located in peri-urban George in the Garden Route, of the Western Cape of South Africa. Current management policy, although required to be ‘scientifically’ based, largely relies on studies done outside the Garden Route. This study addresses the question of how the management of human-baboon relations could be improved on the campus. A case study was undertaken which aimed at addressing the cohabitation of baboons and humans on the NMMU campus, specifically human-baboon resource selection and interaction. The research methodology and the related analytical tools were primarily quantitative but were supplemented by some qualitative data drawn from interviews. Data collected was used to determine landscape features acting as Keystone Resource Areas (KRAs) for both humans and baboons on the campus. Relationships between the frequency and location of negative interactions, and resident-baboon distribution on the campus were also determined. Two key findings emerged from the research. First, residences, non-residence buildings and waste disposal stations act as KRAs for both humans and baboons. Second, the frequency of negative interaction correlates with the time spent by residents and baboons at residences, where common negative interactions between baboons and humans are known to occur. It is postulated that cohabitation on the NMMU George Campus is causing the habituation of baboons, a loss of fear of humans and association of humans with high energy foods. As a result, present cohabitation contributes to negative human-baboon relations in the George area. To ensure sustainable co-existence between humans and baboons on the George Campus, management should implement zonation and wildlife monitoring to reverse the loss of baboon fear of humans and better limit the availability of human-derived foods. In addition, management should consider giving stakeholders co-management roles to foster and facilitate knowledge and responsibility partnerships, and subsequently correct any misunderstandings related to human-baboon relations on the campus. Recommendations for further research include sampling beyond campus boundaries to compensate for regional variations in baboon behaviour and the biophysical environment.
- Full Text:
- Date Issued: 2016
Property price prediction: a model utilising sentiment analysis
- Authors: Botes, Rhys Cameron
- Date: 2019
- Subjects: Natural language processing (Computer science) , Computational linguistics Text processing (Computer science) Social networks
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/37117 , vital:34119
- Description: The increase in the use of social media has led many researchers and companies to investigate the potential uses of the data that is generated by these social media platforms. This research study investigates how the use of sentiment variables, obtained from the social media platform Twitter, can be used to augment housing transfer data in order to develop a predictive model. The Design Science Research (DSR) methodology was followed, guided by a Social Media Framework. Experimentation was required within the Design Cycle of the DSR methodology, which lead to the adoption of the Experimental Research methodology within this cycle. An initial literature review identified regression models for property price prediction. Through experimentation, Gradient Boosting regression was identified as an optimal regression model for this purpose. Thereafter a review of sentiment analysis models was conducted which resulted in the proposal of a CNN-LSTM model for the classification of Tweets. Initial experimentation conducted with this proposed model resulted in an obtained accuracy comparable to the top performing sentiment analysis models identified. A dataset obtained through SemEval, a series of evaluations of computational semantic analysis systems, was used for this phase. For the final experimentation, The CNN-LSTM model was used to obtain sentiment variables from Tweets that were collected from the Western Cape Province in 2017. This property dataset was augmented with the sentiment variables, after which experimentation was conducted by applying Gradient Boosting regression. The augmentation was done in two ways, either based on suburb pertaining to the property, or to the month in which the property was transferred. The results indicate that a model for Property Price Prediction Utilising Sentiment Analysis demonstrates a small improvement when suburb-based sentiment, obtained from Tweets with a minimum threshold per suburb, is utilised. An important finding was the fact that, when geo-coordinates are removed from the dataset, the sentiment variables replace them in the regression results, producing the same level as accuracy as when the coordinates are included.
- Full Text:
- Date Issued: 2019
- Authors: Botes, Rhys Cameron
- Date: 2019
- Subjects: Natural language processing (Computer science) , Computational linguistics Text processing (Computer science) Social networks
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/37117 , vital:34119
- Description: The increase in the use of social media has led many researchers and companies to investigate the potential uses of the data that is generated by these social media platforms. This research study investigates how the use of sentiment variables, obtained from the social media platform Twitter, can be used to augment housing transfer data in order to develop a predictive model. The Design Science Research (DSR) methodology was followed, guided by a Social Media Framework. Experimentation was required within the Design Cycle of the DSR methodology, which lead to the adoption of the Experimental Research methodology within this cycle. An initial literature review identified regression models for property price prediction. Through experimentation, Gradient Boosting regression was identified as an optimal regression model for this purpose. Thereafter a review of sentiment analysis models was conducted which resulted in the proposal of a CNN-LSTM model for the classification of Tweets. Initial experimentation conducted with this proposed model resulted in an obtained accuracy comparable to the top performing sentiment analysis models identified. A dataset obtained through SemEval, a series of evaluations of computational semantic analysis systems, was used for this phase. For the final experimentation, The CNN-LSTM model was used to obtain sentiment variables from Tweets that were collected from the Western Cape Province in 2017. This property dataset was augmented with the sentiment variables, after which experimentation was conducted by applying Gradient Boosting regression. The augmentation was done in two ways, either based on suburb pertaining to the property, or to the month in which the property was transferred. The results indicate that a model for Property Price Prediction Utilising Sentiment Analysis demonstrates a small improvement when suburb-based sentiment, obtained from Tweets with a minimum threshold per suburb, is utilised. An important finding was the fact that, when geo-coordinates are removed from the dataset, the sentiment variables replace them in the regression results, producing the same level as accuracy as when the coordinates are included.
- Full Text:
- Date Issued: 2019
Impacts of cattle grazing pressure on vegetation and soil characteristics in an arid grassland of South Africa
- Authors: Botha, Gert Stephanus
- Date: 2020
- Subjects: Grazing -- Environmental aspects -- South Africa , Cattle -- Feeding and feeds -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/${Handle} , vital:39749
- Description: Natural rangelands are often degraded due to the implementation of incorrect grazing systems. One potential solution is the use of short duration, high intensity grazing. The impacts of this grazing system on, inter alia, vegetation and soil properties have not yet been comprehensively tested within the arid rangelands of South Africa. This study aimed to determine the impacts of grazing intensity on vegetation composition, forage quantity and quality, and soil compaction, soil water infiltration rates and soil chemical properties in an arid grassland in South Africa. The following three grazing treatments were compared: no grazing (NG), low intensity grazing (LIG) and high intensity grazing (HIG). A total of 18 plots (six replicates per treatment) were grazed with Bonsmara cattle. Each plot, 4 ha in size, was surveyed pre-grazing, directly after grazing, and again three, six and 12 months post-grazing. The results indicated that different grazing intensities did not affect grass diversity and the veld condition a year after grazing. Phytomass was influenced by grazing intensity, with no grazing having the highest phytomass throughout the study period. Soil compaction differed among seasons but not among treatments, with summer surveys recording the lowest soil compaction rates. The soil water infiltration rates did not differ between the three different treatments, indicating that grazing intensity did not affect infiltration rates. However, grazing did seem to improve soil nutrient levels when compared to NG. The grazed treatments had higher NH4+, K+, and organic carbon than the NG treatment. Nevertheless, there was no significant difference in nutrients levels when comparing the LIG system to the HIG system. When comparing the soil nutrients levels within a treatment over time, only the HIG treatment showed an increase in soil nutrient levels (Mg2+) over time, whereas the LIG and NG treatments showed no changed throughout the study period. Generally, the study results indicated that in the short term there was no advantage to using higher grazing intensity, although the presence of grazing (as opposed to no grazing) is advantageous to arid grassland functioning.
- Full Text:
- Date Issued: 2020
- Authors: Botha, Gert Stephanus
- Date: 2020
- Subjects: Grazing -- Environmental aspects -- South Africa , Cattle -- Feeding and feeds -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/${Handle} , vital:39749
- Description: Natural rangelands are often degraded due to the implementation of incorrect grazing systems. One potential solution is the use of short duration, high intensity grazing. The impacts of this grazing system on, inter alia, vegetation and soil properties have not yet been comprehensively tested within the arid rangelands of South Africa. This study aimed to determine the impacts of grazing intensity on vegetation composition, forage quantity and quality, and soil compaction, soil water infiltration rates and soil chemical properties in an arid grassland in South Africa. The following three grazing treatments were compared: no grazing (NG), low intensity grazing (LIG) and high intensity grazing (HIG). A total of 18 plots (six replicates per treatment) were grazed with Bonsmara cattle. Each plot, 4 ha in size, was surveyed pre-grazing, directly after grazing, and again three, six and 12 months post-grazing. The results indicated that different grazing intensities did not affect grass diversity and the veld condition a year after grazing. Phytomass was influenced by grazing intensity, with no grazing having the highest phytomass throughout the study period. Soil compaction differed among seasons but not among treatments, with summer surveys recording the lowest soil compaction rates. The soil water infiltration rates did not differ between the three different treatments, indicating that grazing intensity did not affect infiltration rates. However, grazing did seem to improve soil nutrient levels when compared to NG. The grazed treatments had higher NH4+, K+, and organic carbon than the NG treatment. Nevertheless, there was no significant difference in nutrients levels when comparing the LIG system to the HIG system. When comparing the soil nutrients levels within a treatment over time, only the HIG treatment showed an increase in soil nutrient levels (Mg2+) over time, whereas the LIG and NG treatments showed no changed throughout the study period. Generally, the study results indicated that in the short term there was no advantage to using higher grazing intensity, although the presence of grazing (as opposed to no grazing) is advantageous to arid grassland functioning.
- Full Text:
- Date Issued: 2020
Of science and small things: recollections of the past twenty(-)odd years
- Authors: Botha, J. R
- Subjects: Nanoscience , Nanotechnology , f-sa
- Language: English
- Type: text , Lectures
- Identifier: http://hdl.handle.net/10948/20867 , vital:29409
- Description: I will start, therefore, with an overview of achievements in a “new” field of endeavour, a science of small things, popularly called nanoscience, and its spin-off called nanotechnology. I will present a brief history, look at the approaches that have been followed by scientists and engineers to develop and understand small things, and summarise some of the benefits to society in terms of new materials and processes, energy storage and generation, electronics, environmental applications, medicine and transportation. Since our own research focuses on the development on semiconductors, I will conclude the scientific part of the presentation by considering the contribution of semiconductors to the development of nanotechnology and highlight a few examples from our own research during the past two decades on the development of nano-scale semiconductor structures, like nanorods, quantum wells and superlattices.
- Full Text:
- Authors: Botha, J. R
- Subjects: Nanoscience , Nanotechnology , f-sa
- Language: English
- Type: text , Lectures
- Identifier: http://hdl.handle.net/10948/20867 , vital:29409
- Description: I will start, therefore, with an overview of achievements in a “new” field of endeavour, a science of small things, popularly called nanoscience, and its spin-off called nanotechnology. I will present a brief history, look at the approaches that have been followed by scientists and engineers to develop and understand small things, and summarise some of the benefits to society in terms of new materials and processes, energy storage and generation, electronics, environmental applications, medicine and transportation. Since our own research focuses on the development on semiconductors, I will conclude the scientific part of the presentation by considering the contribution of semiconductors to the development of nanotechnology and highlight a few examples from our own research during the past two decades on the development of nano-scale semiconductor structures, like nanorods, quantum wells and superlattices.
- Full Text:
Resource partitioning in the world’s largest gannetry
- Authors: Botha, Jonathan Aubrey
- Date: 2017
- Subjects: Gannets -- South Africa Birds of prey -- Behavior -- South Africa , Birds -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/14707 , vital:27828
- Description: Understanding strategies of resource partitioning within populations is a fundamental aspect of the study of ecology, and one which has been well documented across various taxa. In seabirds, sex-specific differences in foraging behaviour are often thought to reflect strategies of resource partitioning to avoid intra-specific competition. At present Bird Island in Algoa Bay hosts the world’s largest breeding population of gannets, with recent population estimates numbering well over 90 000 breeding pairs. Given the large size of this colony, intense levels of intra-specific competition are expected during the breeding season, particularly in years of poor feeding conditions. In addition, continuous foraging around the breeding colony may lead to the local depletion of prey as the season progresses, calling for flexibility in the foraging behaviour and diet of breeding individuals. Therefore, the aim of this dissertation was to investigate resource partitioning in Cape gannets breeding at Bird Island through strategies of sex-specific foraging and intra-seasonal variability in foraging behaviour and diet. To achieve this, the spatial and temporal aspects of Cape gannet foraging behaviour were assessed during the early stages of chick rearing, over two consecutive breeding seasons (2011/12, 2012/13) using GPS tracking and VHF monitoring. In addition, intra-seasonal variability in foraging behaviour and diet were investigated, taking into account the influence of sex and chick age, to provide a comprehensive assessment of foraging behaviour throughout the chick rearing period. GPS tracking data for 79 birds revealed limited evidence for sex-specific differences over spatial dimensions. An extension in the foraging range of females during a year of lower prey availability (2012/13) was, however, evident. This suggests a possible sex-specific response to prey limitation, likely reflecting resource partitioning strategies or differences in nutritional requirements. VHF data for 95 additional birds revealed a clear pattern in temporal foraging behaviour. In general, females were more likely to be on a foraging trip during the early and mid-day hours, with the probability of males being on a foraging trip increasing towards the late afternoon. Continuous tracking of individuals throughout the 2015/16 breeding season further revealed little evidence for sex-specific differences in spatial distribution and forging effort during both the guard and post-guard stages of chick rearing. A clear increase in foraging range was evident during the early stages of chick rearing as the season progressed. However, birds attending chicks older than 50 days showed an unexpected contraction in foraging range, which appeared to coincide with a dietary shift. During the early stages of breeding the diet was comprised almost exclusively of anchovy, the proportion of which decreased progressively in the diet throughout the breeding season. This was mirrored by a substantial increase in the proportion of saury in the diet. These results suggest that Cape gannets increase their foraging range in response to local prey depletion as the breeding season progresses. However, when alternative prey becomes available they may shift their diet, allowing them to access prey closer to the breeding colony. Overall, this dissertation provides insight into sex-specific behaviour in a monomorphic seabird, suggesting a marginal degree of spatial segregation. The results provide the first support for sex-related temporal foraging segregation in gannets. Such separation could potentially be driven by resource partitioning, but could also relate to differential nutritional requirements. In addition, this study also provided the first comprehensive assessment of foraging behaviour throughout the guard and post guard stages of chick rearing in gannets. These results suggest that a combination of foraging and dietary flexibility may allow Cape gannets to buffer the effects of prey depletion during the breeding season. In conclusion, resource partitioning through sex-specific foraging appears to be limited in the Cape gannet population at Bird Island. Segregation via alternative pathways may however be possible and as such, future studies should consider the influence of individual level segregation and habitat specialization.
- Full Text:
- Date Issued: 2017
- Authors: Botha, Jonathan Aubrey
- Date: 2017
- Subjects: Gannets -- South Africa Birds of prey -- Behavior -- South Africa , Birds -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/14707 , vital:27828
- Description: Understanding strategies of resource partitioning within populations is a fundamental aspect of the study of ecology, and one which has been well documented across various taxa. In seabirds, sex-specific differences in foraging behaviour are often thought to reflect strategies of resource partitioning to avoid intra-specific competition. At present Bird Island in Algoa Bay hosts the world’s largest breeding population of gannets, with recent population estimates numbering well over 90 000 breeding pairs. Given the large size of this colony, intense levels of intra-specific competition are expected during the breeding season, particularly in years of poor feeding conditions. In addition, continuous foraging around the breeding colony may lead to the local depletion of prey as the season progresses, calling for flexibility in the foraging behaviour and diet of breeding individuals. Therefore, the aim of this dissertation was to investigate resource partitioning in Cape gannets breeding at Bird Island through strategies of sex-specific foraging and intra-seasonal variability in foraging behaviour and diet. To achieve this, the spatial and temporal aspects of Cape gannet foraging behaviour were assessed during the early stages of chick rearing, over two consecutive breeding seasons (2011/12, 2012/13) using GPS tracking and VHF monitoring. In addition, intra-seasonal variability in foraging behaviour and diet were investigated, taking into account the influence of sex and chick age, to provide a comprehensive assessment of foraging behaviour throughout the chick rearing period. GPS tracking data for 79 birds revealed limited evidence for sex-specific differences over spatial dimensions. An extension in the foraging range of females during a year of lower prey availability (2012/13) was, however, evident. This suggests a possible sex-specific response to prey limitation, likely reflecting resource partitioning strategies or differences in nutritional requirements. VHF data for 95 additional birds revealed a clear pattern in temporal foraging behaviour. In general, females were more likely to be on a foraging trip during the early and mid-day hours, with the probability of males being on a foraging trip increasing towards the late afternoon. Continuous tracking of individuals throughout the 2015/16 breeding season further revealed little evidence for sex-specific differences in spatial distribution and forging effort during both the guard and post-guard stages of chick rearing. A clear increase in foraging range was evident during the early stages of chick rearing as the season progressed. However, birds attending chicks older than 50 days showed an unexpected contraction in foraging range, which appeared to coincide with a dietary shift. During the early stages of breeding the diet was comprised almost exclusively of anchovy, the proportion of which decreased progressively in the diet throughout the breeding season. This was mirrored by a substantial increase in the proportion of saury in the diet. These results suggest that Cape gannets increase their foraging range in response to local prey depletion as the breeding season progresses. However, when alternative prey becomes available they may shift their diet, allowing them to access prey closer to the breeding colony. Overall, this dissertation provides insight into sex-specific behaviour in a monomorphic seabird, suggesting a marginal degree of spatial segregation. The results provide the first support for sex-related temporal foraging segregation in gannets. Such separation could potentially be driven by resource partitioning, but could also relate to differential nutritional requirements. In addition, this study also provided the first comprehensive assessment of foraging behaviour throughout the guard and post guard stages of chick rearing in gannets. These results suggest that a combination of foraging and dietary flexibility may allow Cape gannets to buffer the effects of prey depletion during the breeding season. In conclusion, resource partitioning through sex-specific foraging appears to be limited in the Cape gannet population at Bird Island. Segregation via alternative pathways may however be possible and as such, future studies should consider the influence of individual level segregation and habitat specialization.
- Full Text:
- Date Issued: 2017
The foraging ecology of female Cape fur seals (Arctocephalus pusillus pusillus) in South Africa
- Botha, Jonathan Aubrey, Kirkman, Stephen, Lombard, Amanda
- Authors: Botha, Jonathan Aubrey , Kirkman, Stephen , Lombard, Amanda
- Date: 2022-04
- Subjects: Seals (Animals)--Habitat—Conservation , Marine ecology—South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55965 , vital:54559
- Description: The marine environment is spatially and temporally dynamic and many marine ecosystems are experiencing impacts of broad-scale climate change. Within these ecosystems, marine predators play a crucial role in ecosystem function through their top-down influences on prey populations. These predators may also respond to bottom-up influences and changes at lower trophic levels. A thorough understanding of marine predator foraging ecology is thus important to improve our understanding of ecosystem function, inform conservation and management measures, and to predict the response of predators to future environmental change. The Cape fur seal (Arctocephalus pusillus pusillus) comprises a major proportion of the southern African marine predator biomass. However, little is known about the foraging distribution and behaviour of the species, despite its obvious importance within the ecosystem and increasing concerns regarding seal-fisheries conflict. Using a variety of technologies, including, GPS and satellite-linked tags, dive behaviour recorders, accelerometers and stable isotope analysis, this thesis investigated the foraging ecology of female Cape fur seals breeding on the coast of South Africa. First, to identify important foraging areas and assess the influence of geographic, temporal and environmental factors on these areas, lactating females from three breeding colonies were fitted with GPS or Argos-linked tracking devices, while individuals from two of these colonies were also fitted with dive behaviour recorders. Results revealed geographic differences in the foraging distributions and ranges of individuals between breeding colonies, which likely reflects a combined influence of ecological setting and density dependant competition. In addition, dive behaviour recorders revealed the occurrence of benthic foraging at both sites where they were deployed, and the dominance of this strategy in some individuals. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Botha, Jonathan Aubrey , Kirkman, Stephen , Lombard, Amanda
- Date: 2022-04
- Subjects: Seals (Animals)--Habitat—Conservation , Marine ecology—South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55965 , vital:54559
- Description: The marine environment is spatially and temporally dynamic and many marine ecosystems are experiencing impacts of broad-scale climate change. Within these ecosystems, marine predators play a crucial role in ecosystem function through their top-down influences on prey populations. These predators may also respond to bottom-up influences and changes at lower trophic levels. A thorough understanding of marine predator foraging ecology is thus important to improve our understanding of ecosystem function, inform conservation and management measures, and to predict the response of predators to future environmental change. The Cape fur seal (Arctocephalus pusillus pusillus) comprises a major proportion of the southern African marine predator biomass. However, little is known about the foraging distribution and behaviour of the species, despite its obvious importance within the ecosystem and increasing concerns regarding seal-fisheries conflict. Using a variety of technologies, including, GPS and satellite-linked tags, dive behaviour recorders, accelerometers and stable isotope analysis, this thesis investigated the foraging ecology of female Cape fur seals breeding on the coast of South Africa. First, to identify important foraging areas and assess the influence of geographic, temporal and environmental factors on these areas, lactating females from three breeding colonies were fitted with GPS or Argos-linked tracking devices, while individuals from two of these colonies were also fitted with dive behaviour recorders. Results revealed geographic differences in the foraging distributions and ranges of individuals between breeding colonies, which likely reflects a combined influence of ecological setting and density dependant competition. In addition, dive behaviour recorders revealed the occurrence of benthic foraging at both sites where they were deployed, and the dominance of this strategy in some individuals. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
Towards the development of InAs/GaInSb strained-layer superlattices for infrared detection
- Authors: Botha, Lindsay
- Date: 2008
- Subjects: Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10526 , http://hdl.handle.net/10948/713 , Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Description: This study focuses on the development of InAs/GaInSb strained-layer superlattice structures by metal organic chemical vapour deposition (MOCVD), and deals with two aspects of the development of InAs/GaInSb SLS’s by MOCVD viz. the deposition of nano-scale (~100 Å) GaInSb layers, and the electrical characterization of unstrained InAs. The first part of this work aims to study the MOCVD growth of GaInSb layers in terms of deposition rate and indium incorporation on the nano-scale. This task is approached by first optimizing the growth of relatively thick (~2 μm) epitaxial films, and then assuming similar growth parameters during nano-scale deposition. The GaInSb layers were grown as part of GaInSb/GaSb quantum well (QW) structures. By using this approach, the GaInSb QW’s (~100 Å) could be characterized with the use of photoluminescence spectroscopy, which, when used in conjunction with transmission electron microscopy and/or X-ray diffractomery, proves useful in the analysis of such small scale deposition. It is shown that the growth rate of GaInSb on the nano-scale approaches the nominal growth rates determined from thick (~2 μm) GaInSb calibration layers. The In incorporation efficiency in nano-layers, however, was markedly lower than what was predicted by the GaInSb calibration layers. This reduction in indium incorporation could be the result of the effects of strain on In incorporation. The choice of substrate orientation for QW deposition was also studied. QW structures were grown simultaneously on both (100) and 2°off (100) GaSb(Te) substrates, and it is shown that growth on non-vicinal substrates is more conducive to the deposition of high quality QW structures. The second part of this study focuses on the electrical characterization of unstrained InAs. It is long known that conventional Hall measurements cannot be used to accurately characterize InAs epitaxial layers, as a result of parallel conduction resulting from surface and/or interface effects. This study looks at extracting the surface and bulk electrical properties of n-type InAs thin films directly from variable magnetic field Hall measurements. For p-type InAs, the situation is complicated by the relatively large electron to hole mobility ratio of InAs which tends to conceal the p-type nature of InAs thin films from Hall measurements. Here, this effect is illustrated by way of theoretical simulation of Hall data.
- Full Text:
- Date Issued: 2008
- Authors: Botha, Lindsay
- Date: 2008
- Subjects: Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10526 , http://hdl.handle.net/10948/713 , Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Description: This study focuses on the development of InAs/GaInSb strained-layer superlattice structures by metal organic chemical vapour deposition (MOCVD), and deals with two aspects of the development of InAs/GaInSb SLS’s by MOCVD viz. the deposition of nano-scale (~100 Å) GaInSb layers, and the electrical characterization of unstrained InAs. The first part of this work aims to study the MOCVD growth of GaInSb layers in terms of deposition rate and indium incorporation on the nano-scale. This task is approached by first optimizing the growth of relatively thick (~2 μm) epitaxial films, and then assuming similar growth parameters during nano-scale deposition. The GaInSb layers were grown as part of GaInSb/GaSb quantum well (QW) structures. By using this approach, the GaInSb QW’s (~100 Å) could be characterized with the use of photoluminescence spectroscopy, which, when used in conjunction with transmission electron microscopy and/or X-ray diffractomery, proves useful in the analysis of such small scale deposition. It is shown that the growth rate of GaInSb on the nano-scale approaches the nominal growth rates determined from thick (~2 μm) GaInSb calibration layers. The In incorporation efficiency in nano-layers, however, was markedly lower than what was predicted by the GaInSb calibration layers. This reduction in indium incorporation could be the result of the effects of strain on In incorporation. The choice of substrate orientation for QW deposition was also studied. QW structures were grown simultaneously on both (100) and 2°off (100) GaSb(Te) substrates, and it is shown that growth on non-vicinal substrates is more conducive to the deposition of high quality QW structures. The second part of this study focuses on the electrical characterization of unstrained InAs. It is long known that conventional Hall measurements cannot be used to accurately characterize InAs epitaxial layers, as a result of parallel conduction resulting from surface and/or interface effects. This study looks at extracting the surface and bulk electrical properties of n-type InAs thin films directly from variable magnetic field Hall measurements. For p-type InAs, the situation is complicated by the relatively large electron to hole mobility ratio of InAs which tends to conceal the p-type nature of InAs thin films from Hall measurements. Here, this effect is illustrated by way of theoretical simulation of Hall data.
- Full Text:
- Date Issued: 2008
A gatherer’s paradise? early humans and plant foraging on the Cape south coast, South Africa
- Authors: Botha, Maria Susan
- Date: 2019
- Subjects: Plant remains (Archaeology) -- South Africa , Plant physiology Plant ecology Botany -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/37139 , vital:34124
- Description: Humans were driven to refugia during the cold and dry glacial Marine Isotope Stage 6 (MIS6) (~195–125 ka); only a few places, including the Cape south coast, show archaeological evidence of continuous human occupation. It has been hypothesised that the Cape south coast provided the requisite shelter to ensure human’s earliest survival because it provided all the right ingredients. The shores offer abundant shellfish, the land a diverse array of plants, and the climate was ameliorated due to the proximity of the then exposed Palaeo-Agulhas Plain to the warm Agulhas current. The aim of this study is to determine whether the indigenous flora of this region could have provided a sufficient edible resource for early humans. Residents of the Cape south coast have genetic ancestry linking them to the Khoe-San, the original inhabitants of the area, and still have an extensive knowledge of the local edible plants. With their help, I set out to determine a) whether humans have been utilising the same plant species over time, b) what the foraging potential of the edible plants in the region is and c) how resilient these plants are to human foraging. If we know whether the plant species known and used today were the same as those that were utilised by past humans, we can then use the contemporary knowledge to make predictions about past utilisation. To answer this question, I collated two databases: archaeological (all plant species found in archaeological sites [dating 0 to 80,000 BP]) and contemporary (all plant species in the modern-day ethnographic literature [last 400 years]) that occur within the Greater Cape Floristic Region(GCFR). I found a significant number of plant species shared between the two databases, which suggests that at least some plant species have been used by humans over a long period of time. To determine the indigenous plant foraging potential of the region, I foraged for food in the Cape south coast (451 bouts) monthly over a two-year period with the help of local inhabitants. The findings show that edible plant resources are distributed patchily and focusing on specific vegetation types would greatly enhance chances of harvesting 2,000 kcal per day, which is considered the daily calorific requirements for a typical hunter-gatherer. I then sought to understand how resilient these plants [(with an emphasis on plants with an underground storage organ (USO)] would be to human foraging. To do this, I set out plots and harvested all edible foods for three consecutive years with the help of foragers. Results indicate that there was a significant reduction in edible weight only in the third year of consecutive harvesting. In conclusion, using various approaches, this study investigates the plant food potential of the Cape south coast from the perspective of early human consumers. The findings suggest that knowledge regarding useful plants dates back to at least 80,000 BP. Food resources are patchily distributed across the main vegetation types found within the Cape south coast and occur in hotspots, i.e. concentrated areas hosting high densities of edible plant foods, surrounded by areas with very low plant food densities. Foragers could have harvested their daily calorific quota more easily if they focused their harvesting efforts in specific vegetation types found in the Cape south coast. Furthermore, many USOs circumvent climatic fluctuations, herbivory or both by staggering their emergence over multiple years, which implies they have some resilience to human foraging.
- Full Text:
- Date Issued: 2019
- Authors: Botha, Maria Susan
- Date: 2019
- Subjects: Plant remains (Archaeology) -- South Africa , Plant physiology Plant ecology Botany -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/37139 , vital:34124
- Description: Humans were driven to refugia during the cold and dry glacial Marine Isotope Stage 6 (MIS6) (~195–125 ka); only a few places, including the Cape south coast, show archaeological evidence of continuous human occupation. It has been hypothesised that the Cape south coast provided the requisite shelter to ensure human’s earliest survival because it provided all the right ingredients. The shores offer abundant shellfish, the land a diverse array of plants, and the climate was ameliorated due to the proximity of the then exposed Palaeo-Agulhas Plain to the warm Agulhas current. The aim of this study is to determine whether the indigenous flora of this region could have provided a sufficient edible resource for early humans. Residents of the Cape south coast have genetic ancestry linking them to the Khoe-San, the original inhabitants of the area, and still have an extensive knowledge of the local edible plants. With their help, I set out to determine a) whether humans have been utilising the same plant species over time, b) what the foraging potential of the edible plants in the region is and c) how resilient these plants are to human foraging. If we know whether the plant species known and used today were the same as those that were utilised by past humans, we can then use the contemporary knowledge to make predictions about past utilisation. To answer this question, I collated two databases: archaeological (all plant species found in archaeological sites [dating 0 to 80,000 BP]) and contemporary (all plant species in the modern-day ethnographic literature [last 400 years]) that occur within the Greater Cape Floristic Region(GCFR). I found a significant number of plant species shared between the two databases, which suggests that at least some plant species have been used by humans over a long period of time. To determine the indigenous plant foraging potential of the region, I foraged for food in the Cape south coast (451 bouts) monthly over a two-year period with the help of local inhabitants. The findings show that edible plant resources are distributed patchily and focusing on specific vegetation types would greatly enhance chances of harvesting 2,000 kcal per day, which is considered the daily calorific requirements for a typical hunter-gatherer. I then sought to understand how resilient these plants [(with an emphasis on plants with an underground storage organ (USO)] would be to human foraging. To do this, I set out plots and harvested all edible foods for three consecutive years with the help of foragers. Results indicate that there was a significant reduction in edible weight only in the third year of consecutive harvesting. In conclusion, using various approaches, this study investigates the plant food potential of the Cape south coast from the perspective of early human consumers. The findings suggest that knowledge regarding useful plants dates back to at least 80,000 BP. Food resources are patchily distributed across the main vegetation types found within the Cape south coast and occur in hotspots, i.e. concentrated areas hosting high densities of edible plant foods, surrounded by areas with very low plant food densities. Foragers could have harvested their daily calorific quota more easily if they focused their harvesting efforts in specific vegetation types found in the Cape south coast. Furthermore, many USOs circumvent climatic fluctuations, herbivory or both by staggering their emergence over multiple years, which implies they have some resilience to human foraging.
- Full Text:
- Date Issued: 2019
Nest site fidelity and nest site selection of loggerhead, Caretta Caretta, and leatherback, dermochelys coriacea, turtles in KwaZulu-Natal, South Africa
- Authors: Botha, Marié
- Date: 2010
- Subjects: Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10696 , http://hdl.handle.net/10948/1233 , Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Description: Loggerhead and leatherback sea turtles nest on the beaches of the north-eastern portion of Kwazulu-Natal within the iSimangaliso Wetland Park. Loggerheads place ~60 percent of all nests within an 8 km stretch of beach, whereas leatherbacks tend to space their nests more evenly along the entire length of the monitoring area. The study aimed to determine nest site fidelity of loggerheads and leatherbacks (using four decades of nesting data housed by Ezemvelo KZN Wildlife) and the factors that influence nest site selection of both species within the 56 km of turtle monitoring area (32N to 100S) and the 5 km area of high-density loggerhead nesting (0N to 12N). The effectiveness of nest site selection was then determined through the hatching success of loggerheads over the 5km area (0N to 12N). Results showed that loggerheads show a high degree of nest site fidelity (~3 km) with nest site fidelity of individuals increasing over subsequent seasons of nesting, as well as these individuals using the same stretches of beach for nesting (the most popular area being 1N to 4N for repeat nesters). Leatherbacks displayed nest site fidelity of ~9 km and this did not increase over successive seasons of nesting. In terms of nest site selection, loggerheads and leatherbacks both avoided areas where low shore rock was present, whereas both species preferred nesting on beaches of intermediate morphodynamic state. Leatherback nesting was significantly higher in areas with wider surf zones. Both species were able to surpass the high water mark when nesting as nests below this point would be almost certainly doomed. Hatching success of loggerheads was comparative to high (83 %) relative to other studies, however, nest success varied across the beach from beacon 1N to 12N. Areas where highest nest success was observed were not areas of highest nest density presumably due to artificial lighting. Results from this study increase our understanding of the evolutionary biology of loggerhead and leatherback turtles in South Africa and the effectiveness of loggerhead nest site selection through hatching success.
- Full Text:
- Date Issued: 2010
- Authors: Botha, Marié
- Date: 2010
- Subjects: Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10696 , http://hdl.handle.net/10948/1233 , Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Description: Loggerhead and leatherback sea turtles nest on the beaches of the north-eastern portion of Kwazulu-Natal within the iSimangaliso Wetland Park. Loggerheads place ~60 percent of all nests within an 8 km stretch of beach, whereas leatherbacks tend to space their nests more evenly along the entire length of the monitoring area. The study aimed to determine nest site fidelity of loggerheads and leatherbacks (using four decades of nesting data housed by Ezemvelo KZN Wildlife) and the factors that influence nest site selection of both species within the 56 km of turtle monitoring area (32N to 100S) and the 5 km area of high-density loggerhead nesting (0N to 12N). The effectiveness of nest site selection was then determined through the hatching success of loggerheads over the 5km area (0N to 12N). Results showed that loggerheads show a high degree of nest site fidelity (~3 km) with nest site fidelity of individuals increasing over subsequent seasons of nesting, as well as these individuals using the same stretches of beach for nesting (the most popular area being 1N to 4N for repeat nesters). Leatherbacks displayed nest site fidelity of ~9 km and this did not increase over successive seasons of nesting. In terms of nest site selection, loggerheads and leatherbacks both avoided areas where low shore rock was present, whereas both species preferred nesting on beaches of intermediate morphodynamic state. Leatherback nesting was significantly higher in areas with wider surf zones. Both species were able to surpass the high water mark when nesting as nests below this point would be almost certainly doomed. Hatching success of loggerheads was comparative to high (83 %) relative to other studies, however, nest success varied across the beach from beacon 1N to 12N. Areas where highest nest success was observed were not areas of highest nest density presumably due to artificial lighting. Results from this study increase our understanding of the evolutionary biology of loggerhead and leatherback turtles in South Africa and the effectiveness of loggerhead nest site selection through hatching success.
- Full Text:
- Date Issued: 2010